Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232290 | XP_003593191.1 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232290 | sp|A8MQN2|LNK1_ARATH | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.39e-30 | 130 |
| Msa0232290 | sp|A8MQN2|LNK1_ARATH | 32.599 | 227 | 118 | 8 | 9 | 218 | 16 | 224 | 9.08e-16 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232290 | G7INV3 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074310 | Msa0232290 | 0.825680 | 4.108083e-54 | -8.615850e-47 |
| Msa0083200 | Msa0232290 | 0.818783 | 1.636877e-52 | -8.615850e-47 |
| Msa0187720 | Msa0232290 | 0.838141 | 3.430102e-57 | -8.615850e-47 |
| Msa0223780 | Msa0232290 | 0.813893 | 2.032887e-51 | -8.615850e-47 |
| Msa0232290 | Msa0271740 | 0.942691 | 4.587014e-102 | -8.615850e-47 |
| Msa0232290 | Msa0310380 | 0.943235 | 1.734019e-102 | -8.615850e-47 |
| Msa0232290 | Msa0586250 | 0.814986 | 1.164678e-51 | -8.615850e-47 |
| Msa0232290 | Msa0664270 | 0.815170 | 1.060151e-51 | -8.615850e-47 |
| Msa0232290 | Msa0751000 | 0.803327 | 3.675166e-49 | -8.615850e-47 |
| Msa0232290 | Msa0794040 | 0.840094 | 1.069329e-57 | -8.615850e-47 |
| Msa0232290 | Msa1025610 | 0.831035 | 2.096881e-55 | -8.615850e-47 |
| Msa0232290 | Msa1132320 | 0.828912 | 6.904667e-55 | -8.615850e-47 |
| Msa0232290 | Msa1201610 | 0.801086 | 1.062655e-48 | -8.615850e-47 |
| Msa0232290 | Msa1294520 | 0.822644 | 2.121137e-53 | -8.615850e-47 |
| Msa0232290 | Msa1372340 | 0.942047 | 1.432055e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232290 | MtrunA17_Chr2g0279081 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1243 |
| Msa0232290 | MtrunA17_Chr4g0050491 | 55.366 | 587 | 247 | 9 | 67 | 639 | 1 | 586 | 0.0 | 562 |
| Msa0232290 | MtrunA17_Chr3g0083841 | 25.185 | 540 | 304 | 22 | 116 | 595 | 68 | 567 | 2.10e-19 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232290 | AT5G64170.1 | 36.531 | 271 | 139 | 8 | 361 | 620 | 293 | 541 | 1.00e-31 | 130 |
| Msa0232290 | AT5G64170.1 | 35.220 | 159 | 79 | 6 | 77 | 218 | 23 | 174 | 1.72e-15 | 80.5 |
| Msa0232290 | AT5G64170.3 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.41e-31 | 130 |
| Msa0232290 | AT5G64170.3 | 32.599 | 227 | 118 | 8 | 9 | 218 | 16 | 224 | 9.23e-17 | 84.7 |
| Msa0232290 | AT5G64170.2 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.41e-31 | 130 |
| Msa0232290 | AT5G64170.2 | 32.599 | 227 | 118 | 8 | 9 | 218 | 16 | 224 | 9.23e-17 | 84.7 |
| Msa0232290 | AT3G54500.6 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 3.03e-16 | 82.8 |
| Msa0232290 | AT3G54500.8 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 3.03e-16 | 82.8 |
| Msa0232290 | AT3G54500.2 | 40.945 | 127 | 59 | 3 | 483 | 595 | 249 | 373 | 3.28e-16 | 82.0 |
| Msa0232290 | AT3G54500.7 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.59e-16 | 82.8 |
| Msa0232290 | AT3G54500.5 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.59e-16 | 82.8 |
| Msa0232290 | AT3G54500.1 | 40.945 | 127 | 59 | 3 | 483 | 595 | 444 | 568 | 3.61e-16 | 82.8 |
| Msa0232290 | AT3G54500.4 | 40.945 | 127 | 59 | 3 | 483 | 595 | 459 | 583 | 5.52e-16 | 82.0 |
| Msa0232290 | AT3G54500.3 | 40.945 | 127 | 59 | 3 | 483 | 595 | 476 | 600 | 5.56e-16 | 82.0 |
Find 159 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTGGTATTCTTTCATTT+TGG | 0.137679 | 2_2:+4552570 | None:intergenic |
| TCTTGAGATATGTCATTTAT+TGG | 0.138127 | 2_2:+4552335 | None:intergenic |
| CCACCTGCTGCACAAGATTT+TGG | 0.185924 | 2_2:+4549111 | None:intergenic |
| AAGATGATGTATAATTATTT+CGG | 0.210199 | 2_2:-4549308 | Msa0232290:three_prime_UTR |
| GGCTGAGAATCAGTTCTTTC+AGG | 0.211228 | 2_2:-4549443 | Msa0232290:CDS |
| CTATGTTCTGCTTATGCTTC+TGG | 0.212108 | 2_2:+4550914 | None:intergenic |
| TTAGAGCATGACTAAATTCT+AGG | 0.239335 | 2_2:+4550845 | None:intergenic |
| AGATGATGTATAATTATTTC+GGG | 0.240551 | 2_2:-4549307 | Msa0232290:three_prime_UTR |
| TTTGAGCAAGAAGTGATTAT+TGG | 0.248089 | 2_2:+4556572 | None:intergenic |
| AGAAGCTGTGATTTAACTTT+TGG | 0.261648 | 2_2:-4552126 | Msa0232290:CDS |
| AACATAGATTCTAATTCTTT+AGG | 0.286126 | 2_2:-4550898 | Msa0232290:CDS |
| TAGTTCTCATGGTCATTCTT+TGG | 0.291046 | 2_2:-4550722 | Msa0232290:CDS |
| AACTGATTCTCAGCCTTTCC+TGG | 0.302412 | 2_2:+4549451 | None:intergenic |
| TTTCTCAAGGGCAGTGTGTC+TGG | 0.311983 | 2_2:+4553431 | None:intergenic |
| ACTGTCCCTTATGCACAATT+TGG | 0.312260 | 2_2:+4550090 | None:intergenic |
| AGAACTCAATCCTTGTTAAA+TGG | 0.314785 | 2_2:-4553353 | Msa0232290:intron |
| TCACTCTCTTCGACTTTCTC+TGG | 0.316838 | 2_2:-4550814 | Msa0232290:CDS |
| AATGAAAGAATACCAGTAAA+AGG | 0.319221 | 2_2:-4552566 | Msa0232290:CDS |
| TTCTTGCTCAAATCACGTTT+TGG | 0.331757 | 2_2:-4556561 | Msa0232290:intron |
| TATTGCTCAGGAGGAGTATA+AGG | 0.347713 | 2_2:+4550997 | None:intergenic |
| AGAAAACATTGGATTTCTTC+CGG | 0.352215 | 2_2:-4551947 | Msa0232290:CDS |
| TATTTGCTTCAAGTGAGTTT+TGG | 0.354113 | 2_2:+4550443 | None:intergenic |
| TTGAAGGAAGAAGAGTCTTC+TGG | 0.357979 | 2_2:-4556639 | Msa0232290:five_prime_UTR |
| TCTAGTGGTGTTACTTCTCT+TGG | 0.358437 | 2_2:-4550943 | Msa0232290:CDS |
| CGCTTTCCTGCTGATGACTT+TGG | 0.359406 | 2_2:+4551042 | None:intergenic |
| AAACATATCAGAATACAATA+TGG | 0.374130 | 2_2:-4551980 | Msa0232290:CDS |
| TTACATTTGTGCTGATCATA+AGG | 0.375300 | 2_2:-4549190 | Msa0232290:three_prime_UTR |
| CATGGCATTCAATGCAAAAC+TGG | 0.375466 | 2_2:+4549259 | None:intergenic |
| TTGAAAGGTGCAATATCGTT+TGG | 0.378904 | 2_2:+4549593 | None:intergenic |
| TTAAAACCAAATTGTGCATA+AGG | 0.389416 | 2_2:-4550096 | Msa0232290:CDS |
| CTAAATTCTAGGTGCGTTGA+AGG | 0.397226 | 2_2:+4550856 | None:intergenic |
| CCTGTTCCAACACCTGTTGC+AGG | 0.401689 | 2_2:+4550410 | None:intergenic |
| ATAATTATTTCGGGTTTACT+TGG | 0.402367 | 2_2:-4549298 | Msa0232290:three_prime_UTR |
| ATTGTGTTGGCTACTAGAAT+GGG | 0.405191 | 2_2:+4552721 | None:intergenic |
| GGCTACTAGAATGGGGAACT+TGG | 0.405900 | 2_2:+4552729 | None:intergenic |
| CAATAATCAGTTTGTAATAG+AGG | 0.412345 | 2_2:-4552702 | Msa0232290:CDS |
| TTGGTCCAGAGAAGAGCTTA+TGG | 0.412463 | 2_2:+4550462 | None:intergenic |
| ATTGGATTTCTTCCGGTCAA+TGG | 0.418127 | 2_2:-4551940 | Msa0232290:CDS |
| TGTTACAGTTTGAAGATAAC+GGG | 0.418573 | 2_2:-4552781 | Msa0232290:intron |
| TGGTCCAGAGAAGAGCTTAT+GGG | 0.423154 | 2_2:+4550463 | None:intergenic |
| GTGTTACAGTTTGAAGATAA+CGG | 0.424661 | 2_2:-4552782 | Msa0232290:intron |
| TTCTCATGGTCATTCTTTGG+TGG | 0.425898 | 2_2:-4550719 | Msa0232290:CDS |
| TTACAAACTGATTATTGTGT+TGG | 0.431587 | 2_2:+4552708 | None:intergenic |
| GCAGATGATACCATCTTTGA+AGG | 0.435329 | 2_2:-4552395 | Msa0232290:CDS |
| TCGTTTGGAAGCAAAGTTGA+TGG | 0.437120 | 2_2:+4549608 | None:intergenic |
| CTCACCCATAAGCTCTTCTC+TGG | 0.441799 | 2_2:-4550467 | Msa0232290:CDS |
| AATGATGGATGGCTGGATAT+AGG | 0.446315 | 2_2:-4552287 | Msa0232290:CDS |
| AGTGGTAATGTTAGTAGCTA+TGG | 0.448221 | 2_2:-4552632 | Msa0232290:CDS |
| TAAGAAGATAAGATCTCAAA+TGG | 0.449643 | 2_2:-4551890 | Msa0232290:CDS |
| AAATTGTTCGTGCAAGTTGA+AGG | 0.450414 | 2_2:-4556655 | None:intergenic |
| AGAAACATATTGCCGATTAG+TGG | 0.450818 | 2_2:-4553413 | Msa0232290:five_prime_UTR |
| TTCTTCTTCACATGGTGCTG+AGG | 0.451712 | 2_2:-4552064 | Msa0232290:CDS |
| TCTTCTTCACATGGTGCTGA+GGG | 0.452219 | 2_2:-4552063 | Msa0232290:CDS |
| TGTGCTATAGACCGATCAAT+AGG | 0.452786 | 2_2:+4549656 | None:intergenic |
| CGCCTTGAATGTATCATTAG+TGG | 0.453007 | 2_2:-4554518 | Msa0232290:five_prime_UTR |
| TACATTTGTGCTGATCATAA+GGG | 0.455222 | 2_2:-4549189 | Msa0232290:three_prime_UTR |
| AAGAGCAGCAATATAGATTC+TGG | 0.457245 | 2_2:-4552434 | Msa0232290:CDS |
| GTCAAACATCTGTATGTTTG+AGG | 0.458710 | 2_2:-4554472 | Msa0232290:intron |
| CAGTCAAGGTTCTTCTCAGC+AGG | 0.459504 | 2_2:-4550590 | Msa0232290:CDS |
| GAATACCAGTAAAAGGTTCA+TGG | 0.459833 | 2_2:-4552559 | Msa0232290:CDS |
| CATGAATCAGCAAGCAATCC+AGG | 0.459923 | 2_2:-4549469 | Msa0232290:CDS |
| TATTGTGTTGGCTACTAGAA+TGG | 0.460505 | 2_2:+4552720 | None:intergenic |
| CAGCTACACCCACCACTAAT+CGG | 0.461204 | 2_2:+4553401 | None:intergenic |
| ATAGCTTCATTCAGGTGTAC+AGG | 0.465624 | 2_2:-4549707 | Msa0232290:intron |
| TTGCCACCTGCAACAGGTGT+TGG | 0.465856 | 2_2:-4550416 | Msa0232290:CDS |
| AGTGAATCAGACACAAAATC+TGG | 0.466240 | 2_2:-4551826 | Msa0232290:CDS |
| GCTCAGCACTCTTAGCTAAA+CGG | 0.468585 | 2_2:+4550062 | None:intergenic |
| CCTGCAACAGGTGTTGGAAC+AGG | 0.472185 | 2_2:-4550410 | Msa0232290:intron |
| ATCTGGTCATAAAGATGTCT+TGG | 0.473531 | 2_2:-4551809 | Msa0232290:CDS |
| CACCACTAATGATACATTCA+AGG | 0.478639 | 2_2:+4554516 | None:intergenic |
| CCACCAAAATCTTGTGCAGC+AGG | 0.482241 | 2_2:-4549114 | Msa0232290:three_prime_UTR |
| TAAAACCAAATTGTGCATAA+GGG | 0.485364 | 2_2:-4550095 | Msa0232290:CDS |
| TAGCACACTTATTGTTTCAC+AGG | 0.486283 | 2_2:-4549640 | Msa0232290:CDS |
| TTTATGTCTGCATATTGCTC+AGG | 0.486638 | 2_2:+4550985 | None:intergenic |
| CTGAACATTGATAATGAAGC+AGG | 0.487371 | 2_2:+4551847 | None:intergenic |
| ATGAAAACATACCGCTGCAT+TGG | 0.490304 | 2_2:+4549568 | None:intergenic |
| TCCTACTTAAGAGGTGATCA+TGG | 0.490865 | 2_2:+4550653 | None:intergenic |
| CACACACTTGCCTTCAAAGA+TGG | 0.493193 | 2_2:+4552385 | None:intergenic |
| ACAAACGCAAATGGTTGCAT+TGG | 0.499312 | 2_2:-4550025 | Msa0232290:CDS |
| CAATCCAGGTTCAACGTGCT+AGG | 0.506235 | 2_2:-4553487 | Msa0232290:intron |
| TCTTGATAATGATGGATGGC+TGG | 0.506703 | 2_2:-4552294 | Msa0232290:CDS |
| TAAGACAAATCTATAAATGA+AGG | 0.506723 | 2_2:+4550760 | None:intergenic |
| GACTCATACAGAGAAGCAAA+AGG | 0.514647 | 2_2:-4552497 | Msa0232290:CDS |
| ATGAGAACTATCCATGTTTG+AGG | 0.517385 | 2_2:+4550735 | None:intergenic |
| CTATGGAACTCTCGGTAAAG+AGG | 0.523194 | 2_2:-4552615 | Msa0232290:CDS |
| CATATTATAACAAACGCAAA+TGG | 0.523301 | 2_2:-4550034 | Msa0232290:CDS |
| GATCTTATCTTCTTATCACC+AGG | 0.526393 | 2_2:+4551898 | None:intergenic |
| GATAAGATCTCAAATGGATG+TGG | 0.526394 | 2_2:-4551884 | Msa0232290:CDS |
| AGAAGTAACACCACTAGAAG+AGG | 0.527293 | 2_2:+4550948 | None:intergenic |
| AAAGTTCGAGGGGTTAGTCT+AGG | 0.529625 | 2_2:-4550529 | Msa0232290:CDS |
| AACATATTGCCGATTAGTGG+TGG | 0.529724 | 2_2:-4553410 | Msa0232290:five_prime_UTR |
| TGTCTTGGTGCCGAAAGAAA+AGG | 0.530302 | 2_2:-4551794 | Msa0232290:intron |
| GATTCCTCAAAAGAAAACAT+TGG | 0.531152 | 2_2:-4551958 | Msa0232290:CDS |
| GTTAGTAGCTATGGAACTCT+CGG | 0.540751 | 2_2:-4552623 | Msa0232290:CDS |
| AAGCTTCCAAAGTCATCAGC+AGG | 0.541829 | 2_2:-4551048 | Msa0232290:CDS |
| AATCCAGGTTCAACGTGCTA+GGG | 0.543278 | 2_2:-4553486 | Msa0232290:intron |
| CCGATCAATAGGATTTGTGT+TGG | 0.547237 | 2_2:+4549667 | None:intergenic |
| ACAGCATGATGTGCCAAAGT+TGG | 0.548678 | 2_2:+4549359 | None:intergenic |
| AGTGAAAGTGAAACCAACTT+TGG | 0.550845 | 2_2:-4549372 | Msa0232290:three_prime_UTR |
| CAATTTGAAAATGAAAATGA+AGG | 0.554036 | 2_2:-4550559 | Msa0232290:CDS |
| ATAATGAAGAGGAGTTCTGC+TGG | 0.555764 | 2_2:-4552089 | Msa0232290:CDS |
| ATGCAGAGACACAATGGCTC+AGG | 0.555984 | 2_2:-4549987 | Msa0232290:CDS |
| AATCGGCAATATGTTTCTCA+AGG | 0.556026 | 2_2:+4553418 | None:intergenic |
| TGCATAATGAAGCTCTATGT+CGG | 0.556095 | 2_2:+4552020 | None:intergenic |
| GAAACTTAGACGATGTTGAC+AGG | 0.556327 | 2_2:-4552265 | Msa0232290:CDS |
| CTAGGGATTCAGAAGTGGCT+TGG | 0.558931 | 2_2:-4553469 | Msa0232290:five_prime_UTR |
| GGGCTAACTTCAGACAATAC+AGG | 0.559037 | 2_2:-4552476 | Msa0232290:CDS |
| TCAAACATGGATAGTTCTCA+TGG | 0.564829 | 2_2:-4550733 | Msa0232290:CDS |
| ATGCTTAATAAACATGACAT+TGG | 0.568380 | 2_2:-4554545 | Msa0232290:five_prime_UTR |
| GAAGGTCATAGTAAAGTTCG+AGG | 0.569058 | 2_2:-4550541 | Msa0232290:CDS |
| CGGTGTGGAGCCTCTTCTAG+TGG | 0.574208 | 2_2:-4550958 | Msa0232290:CDS |
| TTTGTCTTATGCCTCAAACA+TGG | 0.576290 | 2_2:-4550746 | Msa0232290:CDS |
| AGCAAAGTTGATGGATCTGT+CGG | 0.576326 | 2_2:+4549617 | None:intergenic |
| CAGATGTTTGACATTCCTCT+CGG | 0.581603 | 2_2:+4554483 | None:intergenic |
| ACCGCTGCATTGGATTTGAA+AGG | 0.582968 | 2_2:+4549578 | None:intergenic |
| ATGTCTGCATATTGCTCAGG+AGG | 0.584113 | 2_2:+4550988 | None:intergenic |
| GAAATGCTATTTCACAGTCA+AGG | 0.584593 | 2_2:-4550604 | Msa0232290:CDS |
| CATGACGAAAATACACCCTC+AGG | 0.584702 | 2_2:+4552527 | None:intergenic |
| TAGCTTCATTCAGGTGTACA+GGG | 0.585040 | 2_2:-4549706 | Msa0232290:intron |
| AATAATCAGTTTGTAATAGA+GGG | 0.586046 | 2_2:-4552701 | Msa0232290:CDS |
| CCAACACAAATCCTATTGAT+CGG | 0.586181 | 2_2:-4549667 | Msa0232290:CDS |
| GCCATGATCACCTCTTAAGT+AGG | 0.587338 | 2_2:-4550654 | Msa0232290:CDS |
| AAGTTGGTTTCACTTTCACT+AGG | 0.587813 | 2_2:+4549375 | None:intergenic |
| CAGTTTGAAGATAACGGGTG+GGG | 0.592142 | 2_2:-4552776 | Msa0232290:CDS |
| TTATACATCATCTTATACGA+TGG | 0.595888 | 2_2:+4549317 | None:intergenic |
| TTCAAGTTTACCATTTAACA+AGG | 0.596574 | 2_2:+4553343 | None:intergenic |
| ATCTTATCTTCTTATCACCA+GGG | 0.596740 | 2_2:+4551899 | None:intergenic |
| ACTCATACAGAGAAGCAAAA+GGG | 0.599354 | 2_2:-4552496 | Msa0232290:CDS |
| ATCAGCAAGCAATCCAGGAA+AGG | 0.601092 | 2_2:-4549464 | Msa0232290:CDS |
| GCAAATGGTTGCATTGGAGA+TGG | 0.602010 | 2_2:-4550019 | Msa0232290:CDS |
| ACAGTTTGAAGATAACGGGT+GGG | 0.607123 | 2_2:-4552777 | Msa0232290:intron |
| ACGTGCTAGGGATTCAGAAG+TGG | 0.607512 | 2_2:-4553474 | Msa0232290:five_prime_UTR |
| GGAGAGTCTCAATAATGAAG+AGG | 0.607581 | 2_2:-4552100 | Msa0232290:CDS |
| GGATTAAGAGCTGAACATGA+CGG | 0.610788 | 2_2:-4550793 | Msa0232290:CDS |
| CAGTTTGTAATAGAGGGTGA+TGG | 0.614082 | 2_2:-4552695 | Msa0232290:CDS |
| ATTGATGCTATAAAGAGTAG+TGG | 0.616391 | 2_2:-4552650 | Msa0232290:CDS |
| ACCTTTCAAATCCAATGCAG+CGG | 0.619682 | 2_2:-4549579 | Msa0232290:intron |
| ACAAATGTACATCAGTGTCA+TGG | 0.620943 | 2_2:+4549241 | None:intergenic |
| TCTTATCTTCTTATCACCAG+GGG | 0.621499 | 2_2:+4551900 | None:intergenic |
| TACAGTTTGAAGATAACGGG+TGG | 0.624726 | 2_2:-4552778 | Msa0232290:intron |
| TTCATGGTCTGACACACCTG+AGG | 0.629053 | 2_2:-4552543 | Msa0232290:CDS |
| CTTGAATGTATCATTAGTGG+TGG | 0.631648 | 2_2:-4554515 | Msa0232290:five_prime_UTR |
| CAATGGCTCAGGATACAAGC+AGG | 0.636267 | 2_2:-4549976 | Msa0232290:intron |
| CTTTGAAGGCAAGTGTGTGG+TGG | 0.637680 | 2_2:-4552381 | Msa0232290:CDS |
| ATCGGCAATATGTTTCTCAA+GGG | 0.639267 | 2_2:+4553419 | None:intergenic |
| AAGGTCATAGTAAAGTTCGA+GGG | 0.639450 | 2_2:-4550540 | Msa0232290:CDS |
| TCATGGTCTGACACACCTGA+GGG | 0.642015 | 2_2:-4552542 | Msa0232290:CDS |
| TGAAGCATGCAGAGACACAA+TGG | 0.643751 | 2_2:-4549993 | Msa0232290:CDS |
| ACATATTGCCGATTAGTGGT+GGG | 0.646128 | 2_2:-4553409 | Msa0232290:five_prime_UTR |
| TTGTGTTGGCTACTAGAATG+GGG | 0.655577 | 2_2:+4552722 | None:intergenic |
| CCAAAATCTTGTGCAGCAGG+TGG | 0.655848 | 2_2:-4549111 | Msa0232290:three_prime_UTR |
| TGAACATTGATAATGAAGCA+GGG | 0.667170 | 2_2:+4551848 | None:intergenic |
| GTTCCAACACCTGTTGCAGG+TGG | 0.671411 | 2_2:+4550413 | None:intergenic |
| AGCAGCAATATAGATTCTGG+TGG | 0.680935 | 2_2:-4552431 | Msa0232290:CDS |
| AGGTCATAGTAAAGTTCGAG+GGG | 0.696049 | 2_2:-4550539 | Msa0232290:CDS |
| GCAGACATAAATCAGCGGTG+TGG | 0.709486 | 2_2:-4550973 | Msa0232290:CDS |
| CATCTTTGAAGGCAAGTGTG+TGG | 0.715901 | 2_2:-4552384 | Msa0232290:CDS |
| AATATGCAGACATAAATCAG+CGG | 0.754231 | 2_2:-4550978 | Msa0232290:CDS |
| TGGTGGATAGAAGATCCGAG+AGG | 0.795864 | 2_2:-4554498 | Msa0232290:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGAAAGATAAATAT+TGG | - | chr2_2:4550060-4550079 | Msa0232290:CDS | 10.0% |
| !! | ATTATCAAATGTTATATTTA+TGG | + | chr2_2:4550404-4550423 | None:intergenic | 10.0% |
| !! | TAATTACTAGTTAAATAAGT+TGG | - | chr2_2:4549320-4549339 | Msa0232290:three_prime_UTR | 15.0% |
| !!! | AACATTTTAACTTTATAAGT+TGG | - | chr2_2:4549734-4549753 | Msa0232290:intron | 15.0% |
| !! | TTGATTTACAAAGAAAAAAT+AGG | + | chr2_2:4549916-4549935 | None:intergenic | 15.0% |
| !!! | AATTGTCAGATTTTAAAATA+GGG | + | chr2_2:4550137-4550156 | None:intergenic | 15.0% |
| !!! | AAATTGTCAGATTTTAAAAT+AGG | + | chr2_2:4550138-4550157 | None:intergenic | 15.0% |
| !!! | ATTTTAAAATCTGACAATTT+TGG | - | chr2_2:4550138-4550157 | Msa0232290:intron | 15.0% |
| !!! | GTATTTTTGAACTAAAAATT+GGG | - | chr2_2:4550169-4550188 | Msa0232290:intron | 15.0% |
| !!! | TATTTTTGAACTAAAAATTG+GGG | - | chr2_2:4550170-4550189 | Msa0232290:intron | 15.0% |
| !!! | ATTTTAAAATTTGACAGTTT+TGG | + | chr2_2:4550327-4550346 | None:intergenic | 15.0% |
| !!! | AACTGTCAAATTTTAAAATA+AGG | - | chr2_2:4550328-4550347 | Msa0232290:intron | 15.0% |
| !!! | ACTGTCAAATTTTAAAATAA+GGG | - | chr2_2:4550329-4550348 | Msa0232290:intron | 15.0% |
| !!! | TACAAAAATAATTTGTCAAA+GGG | + | chr2_2:4550654-4550673 | None:intergenic | 15.0% |
| !! | TAATATTGTATTTCAAATAC+TGG | + | chr2_2:4551247-4551266 | None:intergenic | 15.0% |
| !!! | TATATATTAGTATCTGATTT+TGG | - | chr2_2:4552089-4552108 | Msa0232290:CDS | 15.0% |
| !!! | TTATTTATTTTGTTATACGA+GGG | + | chr2_2:4552556-4552575 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTGTTATACG+AGG | + | chr2_2:4552557-4552576 | None:intergenic | 15.0% |
| !! | TCATATAGTAAATAGTAAAA+AGG | + | chr2_2:4552619-4552638 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTTCTCTTTAT+TGG | - | chr2_2:4552785-4552804 | Msa0232290:intron | 15.0% |
| !!! | TTTCTATTTTTCTCTTTATT+GGG | - | chr2_2:4552786-4552805 | Msa0232290:intron | 15.0% |
| !!! | TTTCTAAAATATAAACATCT+TGG | + | chr2_2:4554131-4554150 | None:intergenic | 15.0% |
| !! | TAATCAGGATAAAAAAAATT+AGG | + | chr2_2:4554273-4554292 | None:intergenic | 15.0% |
| !! | TATTAAAACAAAGTAAAAAC+AGG | + | chr2_2:4555365-4555384 | None:intergenic | 15.0% |
| !!! | GAATAACAAAAGAATTTTTT+TGG | + | chr2_2:4555865-4555884 | None:intergenic | 15.0% |
| !! | AAGATGATGTATAATTATTT+CGG | - | chr2_2:4556361-4556380 | Msa0232290:intron | 15.0% |
| !! | GTAAATCTCATAGATATAAA+TGG | + | chr2_2:4549276-4549295 | None:intergenic | 20.0% |
| !!! | AAAATGAACTTCCAATATTT+TGG | - | chr2_2:4549477-4549496 | Msa0232290:intron | 20.0% |
| !! | AAATTGAAGATCCAAAATAT+TGG | + | chr2_2:4549491-4549510 | None:intergenic | 20.0% |
| !! | TTTAGAAAATAAAATGAGCA+AGG | + | chr2_2:4549524-4549543 | None:intergenic | 20.0% |
| !!! | ATATTTGTACAACCATTTTA+TGG | - | chr2_2:4549821-4549840 | Msa0232290:intron | 20.0% |
| !! | TACAAAGAAAAAATAGGTAT+TGG | + | chr2_2:4549910-4549929 | None:intergenic | 20.0% |
| !! | TCTATAAAAACATGAAACAA+GGG | + | chr2_2:4550049-4550068 | None:intergenic | 20.0% |
| !! | TTCTATAAAAACATGAAACA+AGG | + | chr2_2:4550050-4550069 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTCAAAAATACG+TGG | + | chr2_2:4550168-4550187 | None:intergenic | 20.0% |
| !!! | CGTATTTTTGAACTAAAAAT+TGG | - | chr2_2:4550168-4550187 | Msa0232290:intron | 20.0% |
| !!! | GTACAAAAATAATTTGTCAA+AGG | + | chr2_2:4550655-4550674 | None:intergenic | 20.0% |
| !!! | TCAAAGATATTTTTCAATCA+TGG | + | chr2_2:4551096-4551115 | None:intergenic | 20.0% |
| !! | TGAAATACAATATTACTTTG+CGG | - | chr2_2:4551252-4551271 | Msa0232290:intron | 20.0% |
| !! | TCACTTCTCAATTATAATAA+TGG | - | chr2_2:4551652-4551671 | Msa0232290:intron | 20.0% |
| !! | TTATAATAATGGTTCAGTTT+AGG | - | chr2_2:4551663-4551682 | Msa0232290:intron | 20.0% |
| !! | AAAAAACACTTATTTATGCT+GGG | + | chr2_2:4551703-4551722 | None:intergenic | 20.0% |
| !! | AAAAAAACACTTATTTATGC+TGG | + | chr2_2:4551704-4551723 | None:intergenic | 20.0% |
| !! | TACTATATGATAGAACATTA+CGG | - | chr2_2:4552629-4552648 | Msa0232290:CDS | 20.0% |
| !! | AATAATCAGTTTGTAATAGA+GGG | - | chr2_2:4552968-4552987 | Msa0232290:intron | 20.0% |
| !!! | TATTCTGATATGTTTTTCAA+TGG | + | chr2_2:4553684-4553703 | None:intergenic | 20.0% |
| !! | AAACATATCAGAATACAATA+TGG | - | chr2_2:4553689-4553708 | Msa0232290:intron | 20.0% |
| !!! | AATTAACTAACCTTTTCTTT+CGG | + | chr2_2:4553888-4553907 | None:intergenic | 20.0% |
| !!! | TAAGTCATATATTCTAGAAT+GGG | - | chr2_2:4554070-4554089 | Msa0232290:intron | 20.0% |
| !!! | TCATAAATTCTTTCATTTTG+AGG | - | chr2_2:4554435-4554454 | Msa0232290:intron | 20.0% |
| !!! | CATAAATTCTTTCATTTTGA+GGG | - | chr2_2:4554436-4554455 | Msa0232290:intron | 20.0% |
| !! | AACATAGATTCTAATTCTTT+AGG | - | chr2_2:4554771-4554790 | Msa0232290:intron | 20.0% |
| !! | TAAGACAAATCTATAAATGA+AGG | + | chr2_2:4554912-4554931 | None:intergenic | 20.0% |
| !! | GAGTTTCAAAAATGAAAAAA+GGG | - | chr2_2:4555037-4555056 | Msa0232290:intron | 20.0% |
| !! | CAATTTGAAAATGAAAATGA+AGG | - | chr2_2:4555110-4555129 | Msa0232290:intron | 20.0% |
| !! | AGATGATGTATAATTATTTC+GGG | - | chr2_2:4556362-4556381 | Msa0232290:intron | 20.0% |
| !!! | TTTTTGGATTGACTTATTTG+AGG | - | chr2_2:4549576-4549595 | Msa0232290:intron | 25.0% |
| ! | CACTGATATAAACATTTATG+AGG | - | chr2_2:4549604-4549623 | Msa0232290:CDS | 25.0% |
| ! | GTTGTCACCAAAAAAAAAAA+AGG | + | chr2_2:4549643-4549662 | None:intergenic | 25.0% |
| !!! | TATTGGCTTAATTGCAATTT+TGG | - | chr2_2:4550077-4550096 | Msa0232290:CDS | 25.0% |
| !!! | GTGATATGTTTTAAATGACT+TGG | - | chr2_2:4550195-4550214 | Msa0232290:intron | 25.0% |
| ! | ATTGTAGACCAAATATTTGA+TGG | - | chr2_2:4550296-4550315 | Msa0232290:intron | 25.0% |
| ! | TTGTATTTCTTTGACTGAAA+AGG | - | chr2_2:4550608-4550627 | Msa0232290:CDS | 25.0% |
| !! | TTCATAATTTCTGAAAACAG+TGG | - | chr2_2:4550819-4550838 | Msa0232290:CDS | 25.0% |
| ! | GGAACAAAACAATTTCTATA+AGG | + | chr2_2:4551021-4551040 | None:intergenic | 25.0% |
| ! | ACTTTAGATATGGTTATGAT+TGG | - | chr2_2:4551064-4551083 | Msa0232290:intron | 25.0% |
| !! | TGAAAAATATCTTTGATGAC+AGG | - | chr2_2:4551100-4551119 | Msa0232290:intron | 25.0% |
| ! | ATGCTTAATAAACATGACAT+TGG | - | chr2_2:4551124-4551143 | Msa0232290:intron | 25.0% |
| ! | GGAGACAATAAAAACAATTA+TGG | + | chr2_2:4551304-4551323 | None:intergenic | 25.0% |
| ! | TCTTATATGGAAACGAATTA+GGG | + | chr2_2:4551370-4551389 | None:intergenic | 25.0% |
| ! | CTATATGATTTCTCAATGAT+AGG | + | chr2_2:4551769-4551788 | None:intergenic | 25.0% |
| ! | CTATCATTGAGAAATCATAT+AGG | - | chr2_2:4551767-4551786 | Msa0232290:intron | 25.0% |
| ! | AGAAACAATCTCTAATTAAG+CGG | + | chr2_2:4551805-4551824 | None:intergenic | 25.0% |
| ! | ATTTCAATGAATGTGTTACA+GGG | + | chr2_2:4551834-4551853 | None:intergenic | 25.0% |
| !! | TGAAATGATTTTCCTTTCTT+TGG | - | chr2_2:4551848-4551867 | Msa0232290:CDS | 25.0% |
| ! | CAGAATGCTTAACATTATAT+GGG | + | chr2_2:4552055-4552074 | None:intergenic | 25.0% |
| ! | ACAGAATGCTTAACATTATA+TGG | + | chr2_2:4552056-4552075 | None:intergenic | 25.0% |
| !! | TTCAAGTTTACCATTTAACA+AGG | + | chr2_2:4552329-4552348 | None:intergenic | 25.0% |
| !! | TCTTTAATATCCCTTTTAAC+TGG | - | chr2_2:4552424-4552443 | Msa0232290:CDS | 25.0% |
| ! | AAAATTCAAATTGAACCTCA+AGG | + | chr2_2:4552465-4552484 | None:intergenic | 25.0% |
| !! | TTGAGGTTCAATTTGAATTT+TGG | - | chr2_2:4552464-4552483 | Msa0232290:CDS | 25.0% |
| !!! | ATTTGAATTTTGGCATGATA+TGG | - | chr2_2:4552474-4552493 | Msa0232290:CDS | 25.0% |
| ! | ATAAAAGCAAACATCTTATG+AGG | - | chr2_2:4552572-4552591 | Msa0232290:CDS | 25.0% |
| !!! | GGTTTGATTTTACGTTTTTA+TGG | - | chr2_2:4552807-4552826 | Msa0232290:intron | 25.0% |
| ! | TTACAAACTGATTATTGTGT+TGG | + | chr2_2:4552964-4552983 | None:intergenic | 25.0% |
| ! | CAATAATCAGTTTGTAATAG+AGG | - | chr2_2:4552967-4552986 | Msa0232290:intron | 25.0% |
| !! | TACTGGTATTCTTTCATTTT+GGG | + | chr2_2:4553101-4553120 | None:intergenic | 25.0% |
| !! | TTACTGGTATTCTTTCATTT+TGG | + | chr2_2:4553102-4553121 | None:intergenic | 25.0% |
| ! | AATGAAAGAATACCAGTAAA+AGG | - | chr2_2:4553103-4553122 | Msa0232290:intron | 25.0% |
| !! | TCTTGAGATATGTCATTTAT+TGG | + | chr2_2:4553337-4553356 | None:intergenic | 25.0% |
| !! | CAATTAATTTTGCAGACAAA+GGG | + | chr2_2:4553475-4553494 | None:intergenic | 25.0% |
| !! | TCAATTAATTTTGCAGACAA+AGG | + | chr2_2:4553476-4553495 | None:intergenic | 25.0% |
| !! | AAATCCAATGTTTTCTTTTG+AGG | + | chr2_2:4553718-4553737 | None:intergenic | 25.0% |
| ! | TAAGAAGATAAGATCTCAAA+TGG | - | chr2_2:4553779-4553798 | Msa0232290:intron | 25.0% |
| !!! | AATTGCATTTTGTTTTGATG+TGG | - | chr2_2:4553904-4553923 | Msa0232290:intron | 25.0% |
| !!! | ATTGCATTTTGTTTTGATGT+GGG | - | chr2_2:4553905-4553924 | Msa0232290:intron | 25.0% |
| !! | GTAAGTCATATATTCTAGAA+TGG | - | chr2_2:4554069-4554088 | Msa0232290:intron | 25.0% |
| ! | TTCCTTAACGTAAAAAATGA+GGG | + | chr2_2:4554171-4554190 | None:intergenic | 25.0% |
| ! | ATTCCTTAACGTAAAAAATG+AGG | + | chr2_2:4554172-4554191 | None:intergenic | 25.0% |
| !!! | GTTTTTGTAAGATGGTTTTA+TGG | - | chr2_2:4554236-4554255 | Msa0232290:intron | 25.0% |
| !!! | ATGGTTTTATGGTATATTCA+TGG | - | chr2_2:4554247-4554266 | Msa0232290:intron | 25.0% |
| ! | TATTAGTTAGAACTCTAATC+AGG | + | chr2_2:4554288-4554307 | None:intergenic | 25.0% |
| !! | TTTCACTATTTTCACTTGAT+TGG | - | chr2_2:4554385-4554404 | Msa0232290:intron | 25.0% |
| ! | TTGTAATACAAAGAAACTGT+TGG | + | chr2_2:4554595-4554614 | None:intergenic | 25.0% |
| ! | GGAGTTTCAAAAATGAAAAA+AGG | - | chr2_2:4555036-4555055 | Msa0232290:intron | 25.0% |
| !! | CTGTTATCAAAATTTTGCAT+AGG | + | chr2_2:4555407-4555426 | None:intergenic | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | - | chr2_2:4555424-4555443 | Msa0232290:intron | 25.0% |
| !!! | ATGTTTTTGTAAACCAAAAG+AGG | - | chr2_2:4555467-4555486 | Msa0232290:intron | 25.0% |
| ! | TTAAAACCAAATTGTGCATA+AGG | - | chr2_2:4555573-4555592 | Msa0232290:intron | 25.0% |
| ! | TAAAACCAAATTGTGCATAA+GGG | - | chr2_2:4555574-4555593 | Msa0232290:intron | 25.0% |
| ! | CATATTATAACAAACGCAAA+TGG | - | chr2_2:4555635-4555654 | Msa0232290:intron | 25.0% |
| !! | TAGACCAAAACAATTCTTTT+TGG | - | chr2_2:4555891-4555910 | Msa0232290:intron | 25.0% |
| !! | AGATCCAAAAAGAATTGTTT+TGG | + | chr2_2:4555898-4555917 | None:intergenic | 25.0% |
| !!! | TAAAAGCTTTTTCTCTACAT+CGG | + | chr2_2:4556264-4556283 | None:intergenic | 25.0% |
| !! | ATGTAGAGAAAAAGCTTTTA+GGG | - | chr2_2:4556264-4556283 | Msa0232290:intron | 25.0% |
| ! | TTATACATCATCTTATACGA+TGG | + | chr2_2:4556355-4556374 | None:intergenic | 25.0% |
| !!! | ATAATTATTTCGGGTTTACT+TGG | - | chr2_2:4556371-4556390 | Msa0232290:intron | 25.0% |
| !! | TCTTTTGCTTAAAGATACAA+AGG | + | chr2_2:4556595-4556614 | None:intergenic | 25.0% |
| TTTGAGCAAGAAGTGATTAT+TGG | + | chr2_2:4549100-4549119 | None:intergenic | 30.0% | |
| TTGATTAGAACGTAGAAATC+TGG | - | chr2_2:4549421-4549440 | Msa0232290:CDS | 30.0% | |
| GATGTAGTGTTTGGATAATA+AGG | - | chr2_2:4549446-4549465 | Msa0232290:CDS | 30.0% | |
| GTGTTTGGATAATAAGGAAA+CGG | - | chr2_2:4549452-4549471 | Msa0232290:CDS | 30.0% | |
| ! | AACATTTATGAGGTTGTTTC+AGG | - | chr2_2:4549614-4549633 | Msa0232290:CDS | 30.0% |
| ! | ACATTTATGAGGTTGTTTCA+GGG | - | chr2_2:4549615-4549634 | Msa0232290:CDS | 30.0% |
| !!! | CAGGGAACCTTTTTTTTTTT+TGG | - | chr2_2:4549633-4549652 | Msa0232290:CDS | 30.0% |
| !! | TTTTTGGTGACAACTTACAA+AGG | - | chr2_2:4549649-4549668 | Msa0232290:CDS | 30.0% |
| TTAACTTCAACTTACAACAC+AGG | + | chr2_2:4549774-4549793 | None:intergenic | 30.0% | |
| !!! | AAGAAGATTTTTTTCGCCAT+TGG | - | chr2_2:4550020-4550039 | Msa0232290:CDS | 30.0% |
| ATGGAAAACTATCAACATCA+AGG | - | chr2_2:4550232-4550251 | Msa0232290:intron | 30.0% | |
| TAGACCAAATATTTGATGGA+GGG | - | chr2_2:4550300-4550319 | Msa0232290:intron | 30.0% | |
| ! | TTTTCACCATTTTGCGAAAT+TGG | + | chr2_2:4550356-4550375 | None:intergenic | 30.0% |
| TTTCGCAAAATGGTGAAAAT+AGG | - | chr2_2:4550357-4550376 | Msa0232290:intron | 30.0% | |
| TTCGCAAAATGGTGAAAATA+GGG | - | chr2_2:4550358-4550377 | Msa0232290:intron | 30.0% | |
| TGACAAACATACATTAGCTA+AGG | + | chr2_2:4550438-4550457 | None:intergenic | 30.0% | |
| CTAATGTATGTTTGTCAAAC+TGG | - | chr2_2:4550441-4550460 | Msa0232290:CDS | 30.0% | |
| ! | TTGTCAAACTGGTCTATAAT+TGG | - | chr2_2:4550452-4550471 | Msa0232290:CDS | 30.0% |
| CAGCTTATGAAACTTAAAAC+AGG | - | chr2_2:4550524-4550543 | Msa0232290:CDS | 30.0% | |
| AGAGATACCTATAATTGCAA+CGG | - | chr2_2:4550574-4550593 | Msa0232290:CDS | 30.0% | |
| ! | TTTTGTACGTAAGTTTTCCA+AGG | - | chr2_2:4550667-4550686 | Msa0232290:CDS | 30.0% |
| TGATACTAACAGTTCATAAC+CGG | + | chr2_2:4550786-4550805 | None:intergenic | 30.0% | |
| !! | AAATTGTTTTGTTCCTTCGT+TGG | - | chr2_2:4551026-4551045 | Msa0232290:CDS | 30.0% |
| ! | CCATATCTAAAGTCACAAAT+TGG | + | chr2_2:4551057-4551076 | None:intergenic | 30.0% |
| CCAATTTGTGACTTTAGATA+TGG | - | chr2_2:4551054-4551073 | Msa0232290:intron | 30.0% | |
| GTTAAGATTGGAATTTCAAG+TGG | + | chr2_2:4551325-4551344 | None:intergenic | 30.0% | |
| GTCTTATATGGAAACGAATT+AGG | + | chr2_2:4551371-4551390 | None:intergenic | 30.0% | |
| !! | ATCGTATTTGTGGTCTTATA+TGG | + | chr2_2:4551383-4551402 | None:intergenic | 30.0% |
| GAAAAATGTCATCGTATTTG+TGG | + | chr2_2:4551393-4551412 | None:intergenic | 30.0% | |
| !! | TTATCCTGAACTTGTTAAGA+TGG | - | chr2_2:4551473-4551492 | Msa0232290:intron | 30.0% |
| GAGAAGTGACAACTATAAAA+GGG | + | chr2_2:4551641-4551660 | None:intergenic | 30.0% | |
| TGAGAAGTGACAACTATAAA+AGG | + | chr2_2:4551642-4551661 | None:intergenic | 30.0% | |
| GAAACAATCTCTAATTAAGC+GGG | + | chr2_2:4551804-4551823 | None:intergenic | 30.0% | |
| CATTTCAATGAATGTGTTAC+AGG | + | chr2_2:4551835-4551854 | None:intergenic | 30.0% | |
| ACTAAATATATGGCATCACA+GGG | + | chr2_2:4551877-4551896 | None:intergenic | 30.0% | |
| AGTAGCATAATCTTATAAGC+AGG | - | chr2_2:4552151-4552170 | Msa0232290:intron | 30.0% | |
| AGAACTCAATCCTTGTTAAA+TGG | - | chr2_2:4552316-4552335 | Msa0232290:CDS | 30.0% | |
| TATCTGATGACCAGTTAAAA+GGG | + | chr2_2:4552437-4552456 | None:intergenic | 30.0% | |
| TTATCTGATGACCAGTTAAA+AGG | + | chr2_2:4552438-4552457 | None:intergenic | 30.0% | |
| TTGTGGTAAAAAATTGACCT+CGG | + | chr2_2:4552502-4552521 | None:intergenic | 30.0% | |
| TACTGATATCAGCAGTAAAA+AGG | + | chr2_2:4552716-4552735 | None:intergenic | 30.0% | |
| ATTACTTATGTAATCTGGCA+TGG | + | chr2_2:4552848-4552867 | None:intergenic | 30.0% | |
| AGCACATTACTTATGTAATC+TGG | + | chr2_2:4552853-4552872 | None:intergenic | 30.0% | |
| GTGTTACAGTTTGAAGATAA+CGG | - | chr2_2:4552887-4552906 | Msa0232290:intron | 30.0% | |
| TGTTACAGTTTGAAGATAAC+GGG | - | chr2_2:4552888-4552907 | Msa0232290:intron | 30.0% | |
| ATTGATGCTATAAAGAGTAG+TGG | - | chr2_2:4553019-4553038 | Msa0232290:intron | 30.0% | |
| !!! | CTCAGTTTTCTTGATAATGA+TGG | - | chr2_2:4553367-4553386 | Msa0232290:five_prime_UTR | 30.0% |
| !!! | GTTTTCTTGATAATGATGGA+TGG | - | chr2_2:4553371-4553390 | Msa0232290:five_prime_UTR | 30.0% |
| !! | AGAAGCTGTGATTTAACTTT+TGG | - | chr2_2:4553543-4553562 | Msa0232290:intron | 30.0% |
| !! | CTGTGATTTAACTTTTGGAA+TGG | - | chr2_2:4553548-4553567 | Msa0232290:intron | 30.0% |
| GATTCCTCAAAAGAAAACAT+TGG | - | chr2_2:4553711-4553730 | Msa0232290:intron | 30.0% | |
| AGAAAACATTGGATTTCTTC+CGG | - | chr2_2:4553722-4553741 | Msa0232290:intron | 30.0% | |
| !! | TTTTTGTTTGAACCATTGAC+CGG | + | chr2_2:4553744-4553763 | None:intergenic | 30.0% |
| ATCTTATCTTCTTATCACCA+GGG | + | chr2_2:4553773-4553792 | None:intergenic | 30.0% | |
| !! | TGAACATTGATAATGAAGCA+GGG | + | chr2_2:4553824-4553843 | None:intergenic | 30.0% |
| ! | CGTCTATAGTTTTTGTAAGA+TGG | - | chr2_2:4554228-4554247 | Msa0232290:intron | 30.0% |
| ! | AAAGCACTATTCACGAAAAA+TGG | + | chr2_2:4554360-4554379 | None:intergenic | 30.0% |
| AATTTATGAGTCCTGCATAA+AGG | + | chr2_2:4554424-4554443 | None:intergenic | 30.0% | |
| !! | TCATTTTGAGGGTAATTTGT+TGG | - | chr2_2:4554447-4554466 | Msa0232290:intron | 30.0% |
| !!! | CATTTTGAGGGTAATTTGTT+GGG | - | chr2_2:4554448-4554467 | Msa0232290:intron | 30.0% |
| TCACACTAATAAAATACACC+AGG | + | chr2_2:4554528-4554547 | None:intergenic | 30.0% | |
| AATATGCAGACATAAATCAG+CGG | - | chr2_2:4554691-4554710 | Msa0232290:intron | 30.0% | |
| TTAGAGCATGACTAAATTCT+AGG | + | chr2_2:4554827-4554846 | None:intergenic | 30.0% | |
| !!! | TCTCTTCTCATTAGTTTTTG+AGG | + | chr2_2:4554982-4555001 | None:intergenic | 30.0% |
| !!! | TTTTGAAACTCCTACTTAAG+AGG | + | chr2_2:4555028-4555047 | None:intergenic | 30.0% |
| ! | TATTTGCTTCAAGTGAGTTT+TGG | + | chr2_2:4555229-4555248 | None:intergenic | 30.0% |
| ! | TAATAAACCTTAGCCTCTTT+TGG | + | chr2_2:4555483-4555502 | None:intergenic | 30.0% |
| !! | TTTCACTTTTCAGCAATAAG+TGG | + | chr2_2:4555521-4555540 | None:intergenic | 30.0% |
| TGCAATCAAAAAAAGGTGAT+TGG | + | chr2_2:4555545-4555564 | None:intergenic | 30.0% | |
| ATCCAACTGCAATCAAAAAA+AGG | + | chr2_2:4555552-4555571 | None:intergenic | 30.0% | |
| ATTAATCTGTCTCGATAACA+AGG | - | chr2_2:4555739-4555758 | Msa0232290:intron | 30.0% | |
| TGAAGTAGAAAGCTATTGTT+TGG | - | chr2_2:4556143-4556162 | Msa0232290:intron | 30.0% | |
| ! | GATGTAGAGAAAAAGCTTTT+AGG | - | chr2_2:4556263-4556282 | Msa0232290:intron | 30.0% |
| ! | TTACATTTGTGCTGATCATA+AGG | - | chr2_2:4556479-4556498 | Msa0232290:intron | 30.0% |
| ! | TACATTTGTGCTGATCATAA+GGG | - | chr2_2:4556480-4556499 | Msa0232290:intron | 30.0% |
| !!! | GCTTTTTTTTCGCGTTGTTT+GGG | + | chr2_2:4549075-4549094 | None:intergenic | 35.0% |
| !!! | AGCTTTTTTTTCGCGTTGTT+TGG | + | chr2_2:4549076-4549095 | None:intergenic | 35.0% |
| ! | TTCTTGCTCAAATCACGTTT+TGG | - | chr2_2:4549108-4549127 | Msa0232290:three_prime_UTR | 35.0% |
| ! | AATCTGGTTGATGTAGTGTT+TGG | - | chr2_2:4549437-4549456 | Msa0232290:CDS | 35.0% |
| ! | TTAATTACTACGCGCGTTTT+TGG | - | chr2_2:4549560-4549579 | Msa0232290:intron | 35.0% |
| GAGAGAAAGTTGCCATAAAA+TGG | + | chr2_2:4549836-4549855 | None:intergenic | 35.0% | |
| TTTGCACCATATCGAGTATT+TGG | - | chr2_2:4550108-4550127 | Msa0232290:intron | 35.0% | |
| GTAGACCAAATATTTGATGG+AGG | - | chr2_2:4550299-4550318 | Msa0232290:intron | 35.0% | |
| ! | AACTGGTCTATAATTGGTGA+AGG | - | chr2_2:4550458-4550477 | Msa0232290:CDS | 35.0% |
| ! | AATTGGTGAAGGTTTTTACC+AGG | - | chr2_2:4550469-4550488 | Msa0232290:CDS | 35.0% |
| CATTGTGTTAAAGTAAAGCC+TGG | + | chr2_2:4550490-4550509 | None:intergenic | 35.0% | |
| TATAATTGCAACGGTAGTGA+CGG | - | chr2_2:4550583-4550602 | Msa0232290:CDS | 35.0% | |
| TGAACTGTTAGTATCATCGA+TGG | - | chr2_2:4550790-4550809 | Msa0232290:CDS | 35.0% | |
| CACCTGACACACAATATAAT+TGG | - | chr2_2:4550966-4550985 | Msa0232290:CDS | 35.0% | |
| TGCCAATTATATTGTGTGTC+AGG | + | chr2_2:4550971-4550990 | None:intergenic | 35.0% | |
| CACCACTAATGATACATTCA+AGG | + | chr2_2:4551156-4551175 | None:intergenic | 35.0% | |
| CTTGAATGTATCATTAGTGG+TGG | - | chr2_2:4551154-4551173 | Msa0232290:intron | 35.0% | |
| GTCAAACATCTGTATGTTTG+AGG | - | chr2_2:4551197-4551216 | Msa0232290:intron | 35.0% | |
| GGTGCTTTATGAGTATATTG+TGG | + | chr2_2:4551283-4551302 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTGAGTCACCTT+TGG | - | chr2_2:4551405-4551424 | Msa0232290:intron | 35.0% |
| TAAATGTCTCAAACCCAAAC+TGG | - | chr2_2:4551507-4551526 | Msa0232290:intron | 35.0% | |
| TAACAAGGTTACTCCAGTTT+GGG | + | chr2_2:4551523-4551542 | None:intergenic | 35.0% | |
| AGGTCGTCTAAAAGAATTTG+AGG | + | chr2_2:4551749-4551768 | None:intergenic | 35.0% | |
| CACTAAATATATGGCATCAC+AGG | + | chr2_2:4551878-4551897 | None:intergenic | 35.0% | |
| GGGGAACAACACTAAATATA+TGG | + | chr2_2:4551887-4551906 | None:intergenic | 35.0% | |
| TGTACATAGAAATGCTCACT+GGG | + | chr2_2:4551907-4551926 | None:intergenic | 35.0% | |
| ATGTACATAGAAATGCTCAC+TGG | + | chr2_2:4551908-4551927 | None:intergenic | 35.0% | |
| ! | TAATGCTTGGTAGCATATCT+TGG | - | chr2_2:4552002-4552021 | Msa0232290:CDS | 35.0% |
| ATCGGCAATATGTTTCTCAA+GGG | + | chr2_2:4552253-4552272 | None:intergenic | 35.0% | |
| AATCGGCAATATGTTTCTCA+AGG | + | chr2_2:4552254-4552273 | None:intergenic | 35.0% | |
| ! | AGAAACATATTGCCGATTAG+TGG | - | chr2_2:4552256-4552275 | Msa0232290:intron | 35.0% |
| TGAGCAAGATAGGAAAAAAG+TGG | + | chr2_2:4552397-4552416 | None:intergenic | 35.0% | |
| ! | TTTTCCTATCTTGCTCAAGT+CGG | - | chr2_2:4552400-4552419 | Msa0232290:CDS | 35.0% |
| TCATCAGATAAACTTCCTTG+AGG | - | chr2_2:4552447-4552466 | Msa0232290:CDS | 35.0% | |
| !!! | GAGGTCAATTTTTTACCACA+AGG | - | chr2_2:4552501-4552520 | Msa0232290:CDS | 35.0% |
| AAGGTTTCTGAATAACCTTG+TGG | + | chr2_2:4552519-4552538 | None:intergenic | 35.0% | |
| !! | ATTGTGTTGGCTACTAGAAT+GGG | + | chr2_2:4552951-4552970 | None:intergenic | 35.0% |
| !! | TATTGTGTTGGCTACTAGAA+TGG | + | chr2_2:4552952-4552971 | None:intergenic | 35.0% |
| ! | AGTGGTAATGTTAGTAGCTA+TGG | - | chr2_2:4553037-4553056 | Msa0232290:intron | 35.0% |
| GAATACCAGTAAAAGGTTCA+TGG | - | chr2_2:4553110-4553129 | Msa0232290:intron | 35.0% | |
| ACTCATACAGAGAAGCAAAA+GGG | - | chr2_2:4553173-4553192 | Msa0232290:intron | 35.0% | |
| AAGAGCAGCAATATAGATTC+TGG | - | chr2_2:4553235-4553254 | Msa0232290:intron | 35.0% | |
| TTGTAAGAAACCCTCCAATT+TGG | - | chr2_2:4553430-4553449 | Msa0232290:five_prime_UTR | 35.0% | |
| GAAAATTCTGCCAAATTGGA+GGG | + | chr2_2:4553443-4553462 | None:intergenic | 35.0% | |
| TGCATAATGAAGCTCTATGT+CGG | + | chr2_2:4553652-4553671 | None:intergenic | 35.0% | |
| TCTTATCTTCTTATCACCAG+GGG | + | chr2_2:4553772-4553791 | None:intergenic | 35.0% | |
| GATCTTATCTTCTTATCACC+AGG | + | chr2_2:4553774-4553793 | None:intergenic | 35.0% | |
| GATAAGATCTCAAATGGATG+TGG | - | chr2_2:4553785-4553804 | Msa0232290:intron | 35.0% | |
| !! | CTGAACATTGATAATGAAGC+AGG | + | chr2_2:4553825-4553844 | None:intergenic | 35.0% |
| AGTGAATCAGACACAAAATC+TGG | - | chr2_2:4553843-4553862 | Msa0232290:intron | 35.0% | |
| ATCTGGTCATAAAGATGTCT+TGG | - | chr2_2:4553860-4553879 | Msa0232290:intron | 35.0% | |
| TGTGAAGCTATATTTCGATG+TGG | - | chr2_2:4553951-4553970 | Msa0232290:intron | 35.0% | |
| GTGAAGCTATATTTCGATGT+GGG | - | chr2_2:4553952-4553971 | Msa0232290:intron | 35.0% | |
| GGTTCTTTATGAAAACCACA+AGG | - | chr2_2:4553973-4553992 | Msa0232290:intron | 35.0% | |
| TATATGACTTACGAGATCAG+AGG | + | chr2_2:4554061-4554080 | None:intergenic | 35.0% | |
| !! | ATTCTAGAATGGGATTCAAC+CGG | - | chr2_2:4554080-4554099 | Msa0232290:intron | 35.0% |
| CTTAACGTAAAAAATGAGGG+TGG | + | chr2_2:4554168-4554187 | None:intergenic | 35.0% | |
| !!! | CACCCTCATTTTTTACGTTA+AGG | - | chr2_2:4554166-4554185 | Msa0232290:intron | 35.0% |
| ! | ATACTGCTGAGTGTACTTTT+AGG | - | chr2_2:4554317-4554336 | Msa0232290:intron | 35.0% |
| ! | TACTGCTGAGTGTACTTTTA+GGG | - | chr2_2:4554318-4554337 | Msa0232290:intron | 35.0% |
| ACAATGCAAGTTTGATTGCA+AGG | - | chr2_2:4554483-4554502 | Msa0232290:five_prime_UTR | 35.0% | |
| CAATGCAAGTTTGATTGCAA+GGG | - | chr2_2:4554484-4554503 | Msa0232290:five_prime_UTR | 35.0% | |
| TTTATGTCTGCATATTGCTC+AGG | + | chr2_2:4554687-4554706 | None:intergenic | 35.0% | |
| TTTGTCTTATGCCTCAAACA+TGG | - | chr2_2:4554923-4554942 | Msa0232290:intron | 35.0% | |
| ATGAGAACTATCCATGTTTG+AGG | + | chr2_2:4554937-4554956 | None:intergenic | 35.0% | |
| TCAAACATGGATAGTTCTCA+TGG | - | chr2_2:4554936-4554955 | Msa0232290:intron | 35.0% | |
| TAGTTCTCATGGTCATTCTT+TGG | - | chr2_2:4554947-4554966 | Msa0232290:intron | 35.0% | |
| !! | GAAATGCTATTTCACAGTCA+AGG | - | chr2_2:4555065-4555084 | Msa0232290:intron | 35.0% |
| AAGGTCATAGTAAAGTTCGA+GGG | - | chr2_2:4555129-4555148 | Msa0232290:intron | 35.0% | |
| TTGTAAACCAAAAGAGGCTA+AGG | - | chr2_2:4555473-4555492 | Msa0232290:intron | 35.0% | |
| !!! | CACCTTTTTTTGATTGCAGT+TGG | - | chr2_2:4555547-4555566 | Msa0232290:intron | 35.0% |
| GATAACACATAGCTTCATTC+AGG | - | chr2_2:4555954-4555973 | Msa0232290:intron | 35.0% | |
| CCAACACAAATCCTATTGAT+CGG | - | chr2_2:4556002-4556021 | Msa0232290:intron | 35.0% | |
| TAGCACACTTATTGTTTCAC+AGG | - | chr2_2:4556029-4556048 | Msa0232290:intron | 35.0% | |
| ! | TTGAAAGGTGCAATATCGTT+TGG | + | chr2_2:4556079-4556098 | None:intergenic | 35.0% |
| TTAAACCAGAAAATGAGGCT+AGG | + | chr2_2:4556170-4556189 | None:intergenic | 35.0% | |
| GTCAGTTAAACCAGAAAATG+AGG | + | chr2_2:4556175-4556194 | None:intergenic | 35.0% | |
| ! | AAGTTGGTTTCACTTTCACT+AGG | + | chr2_2:4556297-4556316 | None:intergenic | 35.0% |
| AGTGAAAGTGAAACCAACTT+TGG | - | chr2_2:4556297-4556316 | Msa0232290:intron | 35.0% | |
| ACAAATGTACATCAGTGTCA+TGG | + | chr2_2:4556431-4556450 | None:intergenic | 35.0% | |
| TTGAAGGAAGAAGAGTCTTC+TGG | - | chr2_2:4549030-4549049 | Msa0232290:three_prime_UTR | 40.0% | |
| !! | TTTTTCGCGTTGTTTGGGAT+GGG | + | chr2_2:4549070-4549089 | None:intergenic | 40.0% |
| !!! | TTTTTTCGCGTTGTTTGGGA+TGG | + | chr2_2:4549071-4549090 | None:intergenic | 40.0% |
| TGGCACGAAAATCAAAGCAA+TGG | + | chr2_2:4549890-4549909 | None:intergenic | 40.0% | |
| CATGAAACAAGGGTAACCAA+TGG | + | chr2_2:4550039-4550058 | None:intergenic | 40.0% | |
| CTCGATATGGTGCAAATAGT+TGG | + | chr2_2:4550104-4550123 | None:intergenic | 40.0% | |
| CTTGGTATATGATGCGATGA+TGG | - | chr2_2:4550213-4550232 | Msa0232290:intron | 40.0% | |
| TGGTCCCTCCATCAAATATT+TGG | + | chr2_2:4550307-4550326 | None:intergenic | 40.0% | |
| AAGGGACCAATTTCGCAAAA+TGG | - | chr2_2:4550347-4550366 | Msa0232290:intron | 40.0% | |
| GTCACTACCGTTGCAATTAT+AGG | + | chr2_2:4550584-4550603 | None:intergenic | 40.0% | |
| ! | TAAGTTTTCCAAGGTCACAC+TGG | - | chr2_2:4550676-4550695 | Msa0232290:CDS | 40.0% |
| TCTATTAACCAGTGTGACCT+TGG | + | chr2_2:4550687-4550706 | None:intergenic | 40.0% | |
| ! | ACACTGGTTAATAGAGATCG+TGG | - | chr2_2:4550692-4550711 | Msa0232290:CDS | 40.0% |
| ! | CACTGGTTAATAGAGATCGT+GGG | - | chr2_2:4550693-4550712 | Msa0232290:CDS | 40.0% |
| TACTAACAGTTCATAACCGG+CGG | + | chr2_2:4550783-4550802 | None:intergenic | 40.0% | |
| ! | AGGTGCTACAGATCTAATAG+TGG | + | chr2_2:4550951-4550970 | None:intergenic | 40.0% |
| CGCCTTGAATGTATCATTAG+TGG | - | chr2_2:4551151-4551170 | Msa0232290:intron | 40.0% | |
| CAGATGTTTGACATTCCTCT+CGG | + | chr2_2:4551189-4551208 | None:intergenic | 40.0% | |
| GTTCTGCATCGTGTTAAGAT+TGG | + | chr2_2:4551337-4551356 | None:intergenic | 40.0% | |
| ATATGGAAACGAATTAGGGC+CGG | + | chr2_2:4551366-4551385 | None:intergenic | 40.0% | |
| GTAACAAGGTTACTCCAGTT+TGG | + | chr2_2:4551524-4551543 | None:intergenic | 40.0% | |
| CTTGTTACCTTGTGATCTCA+CGG | - | chr2_2:4551536-4551555 | Msa0232290:intron | 40.0% | |
| TCTTATTCCGTGAGATCACA+AGG | + | chr2_2:4551546-4551565 | None:intergenic | 40.0% | |
| GTACATAGAAATGCTCACTG+GGG | + | chr2_2:4551906-4551925 | None:intergenic | 40.0% | |
| GCTATCCTATTGCTAATGCT+TGG | - | chr2_2:4551989-4552008 | Msa0232290:CDS | 40.0% | |
| TGCTACCAAGCATTAGCAAT+AGG | + | chr2_2:4551997-4552016 | None:intergenic | 40.0% | |
| ! | AACATATTGCCGATTAGTGG+TGG | - | chr2_2:4552259-4552278 | Msa0232290:intron | 40.0% |
| ! | ACATATTGCCGATTAGTGGT+GGG | - | chr2_2:4552260-4552279 | Msa0232290:CDS | 40.0% |
| TGTTGCAAGCAAAGAGTAGA+AGG | + | chr2_2:4552371-4552390 | None:intergenic | 40.0% | |
| AGGTTATTCAGAAACCTTGC+AGG | - | chr2_2:4552521-4552540 | Msa0232290:CDS | 40.0% | |
| GGTTATTCAGAAACCTTGCA+GGG | - | chr2_2:4552522-4552541 | Msa0232290:CDS | 40.0% | |
| AACAACCAAACCACTAAGTG+GGG | + | chr2_2:4552678-4552697 | None:intergenic | 40.0% | |
| CAACAACCAAACCACTAAGT+GGG | + | chr2_2:4552679-4552698 | None:intergenic | 40.0% | |
| ACAACAACCAAACCACTAAG+TGG | + | chr2_2:4552680-4552699 | None:intergenic | 40.0% | |
| !! | TACAGTTTGAAGATAACGGG+TGG | - | chr2_2:4552891-4552910 | Msa0232290:intron | 40.0% |
| !! | ACAGTTTGAAGATAACGGGT+GGG | - | chr2_2:4552892-4552911 | Msa0232290:intron | 40.0% |
| !! | TTGTGTTGGCTACTAGAATG+GGG | + | chr2_2:4552950-4552969 | None:intergenic | 40.0% |
| CAGTTTGTAATAGAGGGTGA+TGG | - | chr2_2:4552974-4552993 | Msa0232290:intron | 40.0% | |
| GTTAGTAGCTATGGAACTCT+CGG | - | chr2_2:4553046-4553065 | Msa0232290:intron | 40.0% | |
| ! | TCAGACCATGAACCTTTTAC+TGG | + | chr2_2:4553118-4553137 | None:intergenic | 40.0% |
| ! | GGTGTATTTTCGTCATGTGA+TGG | - | chr2_2:4553148-4553167 | Msa0232290:intron | 40.0% |
| GACTCATACAGAGAAGCAAA+AGG | - | chr2_2:4553172-4553191 | Msa0232290:intron | 40.0% | |
| AGCAGCAATATAGATTCTGG+TGG | - | chr2_2:4553238-4553257 | Msa0232290:intron | 40.0% | |
| GCAGATGATACCATCTTTGA+AGG | - | chr2_2:4553274-4553293 | Msa0232290:intron | 40.0% | |
| !! | TCTTGATAATGATGGATGGC+TGG | - | chr2_2:4553375-4553394 | Msa0232290:five_prime_UTR | 40.0% |
| !! | AATGATGGATGGCTGGATAT+AGG | - | chr2_2:4553382-4553401 | Msa0232290:five_prime_UTR | 40.0% |
| GAAACTTAGACGATGTTGAC+AGG | - | chr2_2:4553404-4553423 | Msa0232290:five_prime_UTR | 40.0% | |
| GGAAAATTCTGCCAAATTGG+AGG | + | chr2_2:4553444-4553463 | None:intergenic | 40.0% | |
| TGGGGAAAATTCTGCCAAAT+TGG | + | chr2_2:4553447-4553466 | None:intergenic | 40.0% | |
| TTGCAGACAAAGGGAAAGAT+GGG | + | chr2_2:4553466-4553485 | None:intergenic | 40.0% | |
| TTTGCAGACAAAGGGAAAGA+TGG | + | chr2_2:4553467-4553486 | None:intergenic | 40.0% | |
| GGAGAGTCTCAATAATGAAG+AGG | - | chr2_2:4553569-4553588 | Msa0232290:intron | 40.0% | |
| ATAATGAAGAGGAGTTCTGC+TGG | - | chr2_2:4553580-4553599 | Msa0232290:intron | 40.0% | |
| !!! | TGCTGGTTTTCTTCTTCACA+TGG | - | chr2_2:4553597-4553616 | Msa0232290:intron | 40.0% |
| ATTGGATTTCTTCCGGTCAA+TGG | - | chr2_2:4553729-4553748 | Msa0232290:intron | 40.0% | |
| TCAAACAAAAAGTCATCCCC+TGG | - | chr2_2:4553753-4553772 | Msa0232290:intron | 40.0% | |
| GGAAATTTGTATGAGCCTTG+TGG | + | chr2_2:4553991-4554010 | None:intergenic | 40.0% | |
| AACGTAAAAAATGAGGGTGG+AGG | + | chr2_2:4554165-4554184 | None:intergenic | 40.0% | |
| ATTGTGCTTGACCTTTATGC+AGG | - | chr2_2:4554410-4554429 | Msa0232290:intron | 40.0% | |
| TCAGCAGGAAAGCGAAAAAA+TGG | - | chr2_2:4554636-4554655 | Msa0232290:intron | 40.0% | |
| ! | TATTGCTCAGGAGGAGTATA+AGG | + | chr2_2:4554675-4554694 | None:intergenic | 40.0% |
| AGAAGTAACACCACTAGAAG+AGG | + | chr2_2:4554724-4554743 | None:intergenic | 40.0% | |
| !! | TCTAGTGGTGTTACTTCTCT+TGG | - | chr2_2:4554726-4554745 | Msa0232290:intron | 40.0% |
| CTATGTTCTGCTTATGCTTC+TGG | + | chr2_2:4554758-4554777 | None:intergenic | 40.0% | |
| CTAAATTCTAGGTGCGTTGA+AGG | + | chr2_2:4554816-4554835 | None:intergenic | 40.0% | |
| GGATTAAGAGCTGAACATGA+CGG | - | chr2_2:4554876-4554895 | Msa0232290:intron | 40.0% | |
| TTCTCATGGTCATTCTTTGG+TGG | - | chr2_2:4554950-4554969 | Msa0232290:intron | 40.0% | |
| TCCTACTTAAGAGGTGATCA+TGG | + | chr2_2:4555019-4555038 | None:intergenic | 40.0% | |
| GAAGGTCATAGTAAAGTTCG+AGG | - | chr2_2:4555128-4555147 | Msa0232290:intron | 40.0% | |
| AGGTCATAGTAAAGTTCGAG+GGG | - | chr2_2:4555130-4555149 | Msa0232290:intron | 40.0% | |
| TGCACAAACTTGAACATCAC+AGG | + | chr2_2:4555294-4555313 | None:intergenic | 40.0% | |
| ACTGTCCCTTATGCACAATT+TGG | + | chr2_2:4555582-4555601 | None:intergenic | 40.0% | |
| ACAAACGCAAATGGTTGCAT+TGG | - | chr2_2:4555644-4555663 | Msa0232290:intron | 40.0% | |
| ATAGCTTCATTCAGGTGTAC+AGG | - | chr2_2:4555962-4555981 | Msa0232290:intron | 40.0% | |
| TAGCTTCATTCAGGTGTACA+GGG | - | chr2_2:4555963-4555982 | Msa0232290:intron | 40.0% | |
| CCGATCAATAGGATTTGTGT+TGG | + | chr2_2:4556005-4556024 | None:intergenic | 40.0% | |
| TGTGCTATAGACCGATCAAT+AGG | + | chr2_2:4556016-4556035 | None:intergenic | 40.0% | |
| !! | AGCAAAGTTGATGGATCTGT+CGG | + | chr2_2:4556055-4556074 | None:intergenic | 40.0% |
| TCGTTTGGAAGCAAAGTTGA+TGG | + | chr2_2:4556064-4556083 | None:intergenic | 40.0% | |
| ACCTTTCAAATCCAATGCAG+CGG | - | chr2_2:4556090-4556109 | Msa0232290:intron | 40.0% | |
| ATGAAAACATACCGCTGCAT+TGG | + | chr2_2:4556104-4556123 | None:intergenic | 40.0% | |
| CATGGCATTCAATGCAAAAC+TGG | + | chr2_2:4556413-4556432 | None:intergenic | 40.0% | |
| CTTACAACACAGGCTCTGTT+TGG | + | chr2_2:4549764-4549783 | None:intergenic | 45.0% | |
| GGGAGACCAAATACTCGATA+TGG | + | chr2_2:4550117-4550136 | None:intergenic | 45.0% | |
| TAACCACAAGAATTCACCGC+CGG | - | chr2_2:4550764-4550783 | Msa0232290:CDS | 45.0% | |
| CAAATTGGAAACGCCAACGA+AGG | + | chr2_2:4551042-4551061 | None:intergenic | 45.0% | |
| CACGATGCAGAACATACAAC+CGG | - | chr2_2:4551344-4551363 | Msa0232290:intron | 45.0% | |
| TGTATGAGAGCAGAGTCCAA+AGG | + | chr2_2:4551424-4551443 | None:intergenic | 45.0% | |
| GCGACCATCTTAACAAGTTC+AGG | + | chr2_2:4551480-4551499 | None:intergenic | 45.0% | |
| TTGTTAAGATGGTCGCCAGT+CGG | - | chr2_2:4551484-4551503 | Msa0232290:intron | 45.0% | |
| ! | GGTTTGAGACATTTACCGAC+TGG | + | chr2_2:4551502-4551521 | None:intergenic | 45.0% |
| CGTGAGATCACAAGGTAACA+AGG | + | chr2_2:4551538-4551557 | None:intergenic | 45.0% | |
| ATCACAGGGATGCCAAAGAA+AGG | + | chr2_2:4551863-4551882 | None:intergenic | 45.0% | |
| AATCCAGGTTCAACGTGCTA+GGG | - | chr2_2:4552183-4552202 | Msa0232290:intron | 45.0% | |
| GCAAGCAAAGAGTAGAAGGA+AGG | + | chr2_2:4552367-4552386 | None:intergenic | 45.0% | |
| !! | AGAACCGACTTGAGCAAGAT+AGG | + | chr2_2:4552407-4552426 | None:intergenic | 45.0% |
| TTTGGCATGATATGGTTCCG+AGG | - | chr2_2:4552482-4552501 | Msa0232290:CDS | 45.0% | |
| ! | GAGGGAAATTTTACCCTGCA+AGG | + | chr2_2:4552538-4552557 | None:intergenic | 45.0% |
| ACTGCTGATATCAGTAGCAG+TGG | - | chr2_2:4552720-4552739 | Msa0232290:CDS | 45.0% | |
| CTGCTGATATCAGTAGCAGT+GGG | - | chr2_2:4552721-4552740 | Msa0232290:CDS | 45.0% | |
| !! | CAGTTTGAAGATAACGGGTG+GGG | - | chr2_2:4552893-4552912 | Msa0232290:intron | 45.0% |
| CTATGGAACTCTCGGTAAAG+AGG | - | chr2_2:4553054-4553073 | Msa0232290:intron | 45.0% | |
| CATGACGAAAATACACCCTC+AGG | + | chr2_2:4553145-4553164 | None:intergenic | 45.0% | |
| GGGCTAACTTCAGACAATAC+AGG | - | chr2_2:4553193-4553212 | Msa0232290:intron | 45.0% | |
| CACACACTTGCCTTCAAAGA+TGG | + | chr2_2:4553287-4553306 | None:intergenic | 45.0% | |
| ! | CATCTTTGAAGGCAAGTGTG+TGG | - | chr2_2:4553285-4553304 | Msa0232290:intron | 45.0% |
| TGCAGACAAAGGGAAAGATG+GGG | + | chr2_2:4553465-4553484 | None:intergenic | 45.0% | |
| ! | TTCTTCTTCACATGGTGCTG+AGG | - | chr2_2:4553605-4553624 | Msa0232290:intron | 45.0% |
| ! | TCTTCTTCACATGGTGCTGA+GGG | - | chr2_2:4553606-4553625 | Msa0232290:intron | 45.0% |
| !! | TGTCTTGGTGCCGAAAGAAA+AGG | - | chr2_2:4553875-4553894 | Msa0232290:intron | 45.0% |
| CTATGATCACACTCAGAGAC+CGG | + | chr2_2:4554102-4554121 | None:intergenic | 45.0% | |
| TGCAAGTTTGATTGCAAGGG+TGG | - | chr2_2:4554487-4554506 | Msa0232290:five_prime_UTR | 45.0% | |
| GCAAGTTTGATTGCAAGGGT+GGG | - | chr2_2:4554488-4554507 | Msa0232290:five_prime_UTR | 45.0% | |
| !! | TGGGTTAGTTTCTGAATGCC+TGG | - | chr2_2:4554507-4554526 | Msa0232290:five_prime_UTR | 45.0% |
| AAGCTTCCAAAGTCATCAGC+AGG | - | chr2_2:4554621-4554640 | Msa0232290:intron | 45.0% | |
| ATGTCTGCATATTGCTCAGG+AGG | + | chr2_2:4554684-4554703 | None:intergenic | 45.0% | |
| TCACTCTCTTCGACTTTCTC+TGG | - | chr2_2:4554855-4554874 | Msa0232290:intron | 45.0% | |
| GCCATGATCACCTCTTAAGT+AGG | - | chr2_2:4555015-4555034 | Msa0232290:intron | 45.0% | |
| !! | AAAGTTCGAGGGGTTAGTCT+AGG | - | chr2_2:4555140-4555159 | Msa0232290:intron | 45.0% |
| TGGTCCAGAGAAGAGCTTAT+GGG | + | chr2_2:4555209-4555228 | None:intergenic | 45.0% | |
| TTGGTCCAGAGAAGAGCTTA+TGG | + | chr2_2:4555210-4555229 | None:intergenic | 45.0% | |
| GCTCAGCACTCTTAGCTAAA+CGG | + | chr2_2:4555610-4555629 | None:intergenic | 45.0% | |
| GCAAATGGTTGCATTGGAGA+TGG | - | chr2_2:4555650-4555669 | Msa0232290:intron | 45.0% | |
| TGAAGCATGCAGAGACACAA+TGG | - | chr2_2:4555676-4555695 | Msa0232290:intron | 45.0% | |
| TGTCTCGATAACAAGGTAGC+TGG | - | chr2_2:4555746-4555765 | Msa0232290:intron | 45.0% | |
| !! | CTCTGAAGCCACTTTACAAC+AGG | + | chr2_2:4555772-4555791 | None:intergenic | 45.0% |
| ACCGCTGCATTGGATTTGAA+AGG | + | chr2_2:4556094-4556113 | None:intergenic | 45.0% | |
| ! | TTGGTCCTAGCCTCATTTTC+TGG | - | chr2_2:4556162-4556181 | Msa0232290:intron | 45.0% |
| CATGAATCAGCAAGCAATCC+AGG | - | chr2_2:4556200-4556219 | Msa0232290:intron | 45.0% | |
| ATCAGCAAGCAATCCAGGAA+AGG | - | chr2_2:4556205-4556224 | Msa0232290:intron | 45.0% | |
| ! | AACTGATTCTCAGCCTTTCC+TGG | + | chr2_2:4556221-4556240 | None:intergenic | 45.0% |
| GGCTGAGAATCAGTTCTTTC+AGG | - | chr2_2:4556226-4556245 | Msa0232290:intron | 45.0% | |
| ACAGCATGATGTGCCAAAGT+TGG | + | chr2_2:4556313-4556332 | None:intergenic | 45.0% | |
| GGCGGTGAATTCTTGTGGTT+AGG | + | chr2_2:4550765-4550784 | None:intergenic | 50.0% | |
| TAACCGGCGGTGAATTCTTG+TGG | + | chr2_2:4550770-4550789 | None:intergenic | 50.0% | |
| ! | TGGTGGATAGAAGATCCGAG+AGG | - | chr2_2:4551171-4551190 | Msa0232290:intron | 50.0% |
| CATTGAGCAGTGTGTTGAGC+TGG | - | chr2_2:4551948-4551967 | Msa0232290:CDS | 50.0% | |
| AGCAGGCTGTTGTTCAATCC+AGG | - | chr2_2:4552168-4552187 | Msa0232290:intron | 50.0% | |
| CAATCCAGGTTCAACGTGCT+AGG | - | chr2_2:4552182-4552201 | Msa0232290:intron | 50.0% | |
| AATCCCTAGCACGTTGAACC+TGG | + | chr2_2:4552189-4552208 | None:intergenic | 50.0% | |
| ACGTGCTAGGGATTCAGAAG+TGG | - | chr2_2:4552195-4552214 | Msa0232290:intron | 50.0% | |
| CTAGGGATTCAGAAGTGGCT+TGG | - | chr2_2:4552200-4552219 | Msa0232290:intron | 50.0% | |
| TTTCTCAAGGGCAGTGTGTC+TGG | + | chr2_2:4552241-4552260 | None:intergenic | 50.0% | |
| CAGCTACACCCACCACTAAT+CGG | + | chr2_2:4552271-4552290 | None:intergenic | 50.0% | |
| ACCAAACCACTAAGTGGGGT+CGG | + | chr2_2:4552674-4552693 | None:intergenic | 50.0% | |
| GGCTACTAGAATGGGGAACT+TGG | + | chr2_2:4552943-4552962 | None:intergenic | 50.0% | |
| TTCATGGTCTGACACACCTG+AGG | - | chr2_2:4553126-4553145 | Msa0232290:intron | 50.0% | |
| TCATGGTCTGACACACCTGA+GGG | - | chr2_2:4553127-4553146 | Msa0232290:intron | 50.0% | |
| ! | CTTTGAAGGCAAGTGTGTGG+TGG | - | chr2_2:4553288-4553307 | Msa0232290:intron | 50.0% |
| CGCTTTCCTGCTGATGACTT+TGG | + | chr2_2:4554630-4554649 | None:intergenic | 50.0% | |
| GCAGACATAAATCAGCGGTG+TGG | - | chr2_2:4554696-4554715 | Msa0232290:intron | 50.0% | |
| CAGTCAAGGTTCTTCTCAGC+AGG | - | chr2_2:4555079-4555098 | Msa0232290:intron | 50.0% | |
| CTCACCCATAAGCTCTTCTC+TGG | - | chr2_2:4555202-4555221 | Msa0232290:intron | 50.0% | |
| ! | TAGCTTTTGCCACCTGCAAC+AGG | - | chr2_2:4555247-4555266 | Msa0232290:intron | 50.0% |
| ATGCAGAGACACAATGGCTC+AGG | - | chr2_2:4555682-4555701 | Msa0232290:intron | 50.0% | |
| CAATGGCTCAGGATACAAGC+AGG | - | chr2_2:4555693-4555712 | Msa0232290:intron | 50.0% | |
| ! | GTAGCTGGCCTGTTGTAAAG+TGG | - | chr2_2:4555761-4555780 | Msa0232290:intron | 50.0% |
| ! | CCTGCTGCACAAGATTTTGG+TGG | + | chr2_2:4556558-4556577 | None:intergenic | 50.0% |
| CCACCAAAATCTTGTGCAGC+AGG | - | chr2_2:4556555-4556574 | Msa0232290:intron | 50.0% | |
| ! | CCACCTGCTGCACAAGATTT+TGG | + | chr2_2:4556561-4556580 | None:intergenic | 50.0% |
| CCAAAATCTTGTGCAGCAGG+TGG | - | chr2_2:4556558-4556577 | Msa0232290:intron | 50.0% | |
| TGAGCAGTGTGTTGAGCTGG+AGG | - | chr2_2:4551951-4551970 | Msa0232290:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2_2:4552666-4552685 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2_2:4552665-4552684 | Msa0232290:CDS | 55.0% | |
| TTGCCACCTGCAACAGGTGT+TGG | - | chr2_2:4555253-4555272 | Msa0232290:intron | 55.0% | |
| GTTCCAACACCTGTTGCAGG+TGG | + | chr2_2:4555259-4555278 | None:intergenic | 55.0% | |
| CCTGTTCCAACACCTGTTGC+AGG | + | chr2_2:4555262-4555281 | None:intergenic | 55.0% | |
| !! | CCTGCAACAGGTGTTGGAAC+AGG | - | chr2_2:4555259-4555278 | Msa0232290:intron | 55.0% |
| GCCGACCCCACTTAGTGGTT+TGG | - | chr2_2:4552670-4552689 | Msa0232290:CDS | 60.0% | |
| CGGTGTGGAGCCTCTTCTAG+TGG | - | chr2_2:4554711-4554730 | Msa0232290:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4549023 | 4556668 | 4549023 | ID=Msa0232290;Name=Msa0232290 |
| chr2_2 | mRNA | 4549023 | 4556668 | 4549023 | ID=Msa0232290-mRNA-1;Parent=Msa0232290;Name=Msa0232290-mRNA-1;_AED=0.16;_eAED=0.16;_QI=349|1|1|1|0.62|0.66|9|370|645 |
| chr2_2 | exon | 4549023 | 4549494 | 4549023 | ID=Msa0232290-mRNA-1:exon:1921;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4549580 | 4549715 | 4549580 | ID=Msa0232290-mRNA-1:exon:1920;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4549977 | 4550125 | 4549977 | ID=Msa0232290-mRNA-1:exon:1919;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4550411 | 4551070 | 4550411 | ID=Msa0232290-mRNA-1:exon:1918;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4551795 | 4552146 | 4551795 | ID=Msa0232290-mRNA-1:exon:1917;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4552260 | 4552795 | 4552260 | ID=Msa0232290-mRNA-1:exon:1916;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4553354 | 4553501 | 4553354 | ID=Msa0232290-mRNA-1:exon:1915;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4554473 | 4554569 | 4554473 | ID=Msa0232290-mRNA-1:exon:1914;Parent=Msa0232290-mRNA-1 |
| chr2_2 | exon | 4556562 | 4556668 | 4556562 | ID=Msa0232290-mRNA-1:exon:1913;Parent=Msa0232290-mRNA-1 |
| chr2_2 | five_prime_UTR | 4556562 | 4556668 | 4556562 | ID=Msa0232290-mRNA-1:five_prime_utr;Parent=Msa0232290-mRNA-1 |
| chr2_2 | five_prime_UTR | 4554473 | 4554569 | 4554473 | ID=Msa0232290-mRNA-1:five_prime_utr;Parent=Msa0232290-mRNA-1 |
| chr2_2 | five_prime_UTR | 4553357 | 4553501 | 4553357 | ID=Msa0232290-mRNA-1:five_prime_utr;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4553354 | 4553356 | 4553354 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4552260 | 4552795 | 4552260 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4551795 | 4552146 | 4551795 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4550411 | 4551070 | 4550411 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4549977 | 4550125 | 4549977 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4549580 | 4549715 | 4549580 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | CDS | 4549393 | 4549494 | 4549393 | ID=Msa0232290-mRNA-1:cds;Parent=Msa0232290-mRNA-1 |
| chr2_2 | three_prime_UTR | 4549023 | 4549392 | 4549023 | ID=Msa0232290-mRNA-1:three_prime_utr;Parent=Msa0232290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
