Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187720 | XP_013468292.1 | 97.098 | 379 | 9 | 2 | 19 | 397 | 1 | 377 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187720 | sp|Q9FM66|PLY21_ARATH | 39.929 | 283 | 149 | 6 | 82 | 344 | 66 | 347 | 2.32e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187720 | A0A072VJW3 | 97.098 | 379 | 9 | 2 | 19 | 397 | 1 | 377 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028610 | Msa0187720 | 0.830384 | 3.027381e-55 | -8.615850e-47 |
| Msa0040190 | Msa0187720 | 0.818605 | 1.796512e-52 | -8.615850e-47 |
| Msa0074310 | Msa0187720 | 0.990365 | 2.729718e-182 | -8.615850e-47 |
| Msa0076280 | Msa0187720 | 0.837135 | 6.212905e-57 | -8.615850e-47 |
| Msa0083200 | Msa0187720 | 0.847866 | 8.815226e-60 | -8.615850e-47 |
| Msa0087880 | Msa0187720 | 0.816095 | 6.597362e-52 | -8.615850e-47 |
| Msa0124310 | Msa0187720 | 0.824005 | 1.019973e-53 | -8.615850e-47 |
| Msa0134550 | Msa0187720 | 0.828113 | 1.077054e-54 | -8.615850e-47 |
| Msa0168680 | Msa0187720 | 0.841200 | 5.487713e-58 | -8.615850e-47 |
| Msa0175480 | Msa0187720 | 0.845526 | 3.843381e-59 | -8.615850e-47 |
| Msa0187720 | Msa0207530 | 0.805736 | 1.155697e-49 | -8.615850e-47 |
| Msa0187720 | Msa0232290 | 0.838141 | 3.430102e-57 | -8.615850e-47 |
| Msa0187720 | Msa0271740 | 0.856975 | 2.236429e-62 | -8.615850e-47 |
| Msa0187720 | Msa0301800 | 0.800976 | 1.119562e-48 | -8.615850e-47 |
| Msa0187720 | Msa0307490 | 0.824862 | 6.411589e-54 | -8.615850e-47 |
| Msa0187720 | Msa0310380 | 0.855224 | 7.281049e-62 | -8.615850e-47 |
| Msa0187720 | Msa0370350 | 0.804032 | 2.623952e-49 | -8.615850e-47 |
| Msa0187720 | Msa0375270 | 0.809855 | 1.539589e-50 | -8.615850e-47 |
| Msa0187720 | Msa0426680 | 0.812597 | 3.913655e-51 | -8.615850e-47 |
| Msa0187720 | Msa0475830 | 0.802533 | 5.362680e-49 | -8.615850e-47 |
| Msa0187720 | Msa0545910 | 0.805191 | 1.503990e-49 | -8.615850e-47 |
| Msa0187720 | Msa0577140 | 0.826298 | 2.928916e-54 | -8.615850e-47 |
| Msa0187720 | Msa0601710 | 0.803311 | 3.704383e-49 | -8.615850e-47 |
| Msa0187720 | Msa0624890 | 0.826462 | 2.676978e-54 | -8.615850e-47 |
| Msa0187720 | Msa0641970 | 0.817391 | 3.378343e-52 | -8.615850e-47 |
| Msa0187720 | Msa0681040 | 0.813309 | 2.731590e-51 | -8.615850e-47 |
| Msa0187720 | Msa0694170 | 0.806012 | 1.011186e-49 | -8.615850e-47 |
| Msa0187720 | Msa0704750 | 0.824656 | 7.172319e-54 | -8.615850e-47 |
| Msa0187720 | Msa0707870 | 0.808717 | 2.700251e-50 | -8.615850e-47 |
| Msa0187720 | Msa0744070 | 0.800978 | 1.118235e-48 | -8.615850e-47 |
| Msa0187720 | Msa0786970 | 0.805654 | 1.202375e-49 | -8.615850e-47 |
| Msa0187720 | Msa0794040 | 0.829523 | 4.908201e-55 | -8.615850e-47 |
| Msa0187720 | Msa0822380 | 0.800552 | 1.366141e-48 | -8.615850e-47 |
| Msa0187720 | Msa0827560 | 0.808403 | 3.151409e-50 | -8.615850e-47 |
| Msa0187720 | Msa0844330 | 0.811052 | 8.490185e-51 | -8.615850e-47 |
| Msa0187720 | Msa0854560 | 0.801846 | 7.426339e-49 | -8.615850e-47 |
| Msa0187720 | Msa0862750 | 0.802455 | 5.563867e-49 | -8.615850e-47 |
| Msa0187720 | Msa0870210 | 0.811084 | 8.353467e-51 | -8.615850e-47 |
| Msa0187720 | Msa1025610 | 0.803018 | 4.257946e-49 | -8.615850e-47 |
| Msa0187720 | Msa1084630 | 0.846559 | 2.013322e-59 | -8.615850e-47 |
| Msa0187720 | Msa1132320 | 0.826837 | 2.179110e-54 | -8.615850e-47 |
| Msa0187720 | Msa1199690 | 0.808789 | 2.606538e-50 | -8.615850e-47 |
| Msa0187720 | Msa1203090 | 0.809050 | 2.291648e-50 | -8.615850e-47 |
| Msa0187720 | Msa1215660 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0187720 | Msa1264230 | 0.826931 | 2.068693e-54 | -8.615850e-47 |
| Msa0187720 | Msa1294520 | 0.836685 | 8.096928e-57 | -8.615850e-47 |
| Msa0187720 | Msa1302920 | 0.829424 | 5.188886e-55 | -8.615850e-47 |
| Msa0187720 | Msa1351560 | 0.827722 | 1.337069e-54 | -8.615850e-47 |
| Msa0187720 | Msa1372340 | 0.854422 | 1.244148e-61 | -8.615850e-47 |
| Msa0187720 | Msa1377160 | 0.812620 | 3.867834e-51 | -8.615850e-47 |
| Msa0187720 | Msa1377170 | 0.814049 | 1.877967e-51 | -8.615850e-47 |
| Msa0187720 | Msa1385580 | 0.800317 | 1.525427e-48 | -8.615850e-47 |
| Msa0187720 | Msa1400330 | 0.847874 | 8.774691e-60 | -8.615850e-47 |
| Msa0187720 | Msa1400600 | 0.807870 | 4.092994e-50 | -8.615850e-47 |
| Msa0187720 | Msa1415120 | 0.801576 | 8.434902e-49 | -8.615850e-47 |
| Msa0187720 | Msa1438420 | 0.803555 | 3.296716e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187720 | MtrunA17_Chr1g0182021 | 97.098 | 379 | 9 | 2 | 19 | 397 | 1 | 377 | 0.0 | 768 |
| Msa0187720 | MtrunA17_Chr1g0212931 | 73.765 | 324 | 84 | 1 | 73 | 395 | 4 | 327 | 0.0 | 506 |
| Msa0187720 | MtrunA17_Chr1g0210321 | 40.138 | 289 | 145 | 8 | 82 | 344 | 84 | 370 | 5.16e-49 | 173 |
| Msa0187720 | MtrunA17_Chr6g0452861 | 37.979 | 287 | 152 | 5 | 84 | 345 | 123 | 408 | 7.82e-49 | 171 |
| Msa0187720 | MtrunA17_Chr4g0075231 | 40.856 | 257 | 127 | 6 | 76 | 308 | 50 | 305 | 3.64e-48 | 168 |
| Msa0187720 | MtrunA17_Chr2g0288921 | 36.145 | 332 | 181 | 10 | 37 | 344 | 39 | 363 | 4.13e-47 | 166 |
| Msa0187720 | MtrunA17_Chr6g0458201 | 37.193 | 285 | 155 | 4 | 84 | 344 | 75 | 359 | 2.47e-45 | 161 |
| Msa0187720 | MtrunA17_Chr1g0180381 | 37.126 | 334 | 176 | 10 | 84 | 391 | 90 | 415 | 7.68e-43 | 155 |
| Msa0187720 | MtrunA17_Chr7g0216581 | 38.014 | 292 | 152 | 6 | 84 | 347 | 121 | 411 | 8.37e-43 | 155 |
| Msa0187720 | MtrunA17_Chr1g0169731 | 38.062 | 289 | 151 | 8 | 82 | 344 | 119 | 405 | 2.52e-42 | 154 |
| Msa0187720 | MtrunA17_Chr4g0058051 | 36.054 | 294 | 162 | 6 | 76 | 344 | 69 | 361 | 3.10e-42 | 152 |
| Msa0187720 | MtrunA17_Chr7g0237761 | 37.500 | 288 | 154 | 6 | 82 | 344 | 113 | 399 | 9.77e-41 | 149 |
| Msa0187720 | MtrunA17_Chr3g0116521 | 35.714 | 294 | 163 | 6 | 76 | 344 | 69 | 361 | 5.00e-40 | 147 |
| Msa0187720 | MtrunA17_Chr3g0123331 | 36.177 | 293 | 162 | 6 | 76 | 344 | 69 | 360 | 8.33e-40 | 146 |
| Msa0187720 | MtrunA17_Chr5g0416061 | 35.254 | 295 | 160 | 9 | 82 | 347 | 117 | 409 | 2.52e-39 | 145 |
| Msa0187720 | MtrunA17_Chr7g0264891 | 35.417 | 336 | 179 | 8 | 84 | 391 | 85 | 410 | 7.88e-39 | 145 |
| Msa0187720 | MtrunA17_Chr3g0123321 | 34.130 | 293 | 168 | 6 | 76 | 344 | 67 | 358 | 7.67e-38 | 140 |
| Msa0187720 | MtrunA17_Chr8g0373761 | 36.803 | 269 | 136 | 9 | 104 | 344 | 83 | 345 | 1.54e-36 | 137 |
| Msa0187720 | MtrunA17_Chr4g0031851 | 36.680 | 259 | 134 | 8 | 110 | 344 | 38 | 290 | 2.11e-36 | 136 |
| Msa0187720 | MtrunA17_Chr4g0060211 | 32.787 | 305 | 176 | 7 | 76 | 352 | 99 | 402 | 2.72e-36 | 137 |
| Msa0187720 | MtrunA17_Chr8g0373721 | 36.680 | 259 | 134 | 7 | 110 | 344 | 93 | 345 | 4.59e-35 | 133 |
| Msa0187720 | MtrunA17_Chr3g0089181 | 36.680 | 259 | 134 | 9 | 110 | 344 | 74 | 326 | 5.44e-35 | 132 |
| Msa0187720 | MtrunA17_Chr8g0373731 | 35.521 | 259 | 137 | 7 | 110 | 344 | 93 | 345 | 5.80e-34 | 130 |
| Msa0187720 | MtrunA17_Chr5g0416041 | 34.256 | 289 | 162 | 7 | 82 | 344 | 117 | 403 | 6.07e-34 | 131 |
| Msa0187720 | MtrunA17_Chr8g0373701 | 35.271 | 258 | 139 | 8 | 110 | 344 | 148 | 400 | 9.27e-34 | 130 |
| Msa0187720 | MtrunA17_Chr8g0362561 | 33.555 | 301 | 164 | 10 | 82 | 347 | 116 | 415 | 2.70e-33 | 129 |
| Msa0187720 | MtrunA17_Chr1g0183941 | 35.065 | 231 | 121 | 7 | 137 | 344 | 3 | 227 | 1.57e-29 | 115 |
| Msa0187720 | MtrunA17_Chr5g0414541 | 34.211 | 266 | 147 | 8 | 104 | 344 | 82 | 344 | 6.66e-29 | 116 |
| Msa0187720 | MtrunA17_Chr5g0403481 | 33.700 | 273 | 147 | 9 | 104 | 348 | 82 | 348 | 7.00e-29 | 116 |
| Msa0187720 | MtrunA17_Chr5g0403461 | 33.700 | 273 | 147 | 9 | 104 | 348 | 82 | 348 | 7.00e-29 | 116 |
| Msa0187720 | MtrunA17_Chr5g0403491 | 33.700 | 273 | 147 | 9 | 104 | 348 | 82 | 348 | 7.00e-29 | 116 |
| Msa0187720 | MtrunA17_Chr5g0403391 | 35.294 | 255 | 135 | 9 | 114 | 344 | 96 | 344 | 1.74e-28 | 115 |
| Msa0187720 | MtrunA17_Chr5g0403411 | 34.000 | 250 | 136 | 8 | 104 | 325 | 82 | 330 | 2.20e-27 | 112 |
| Msa0187720 | MtrunA17_Chr6g0481851 | 30.800 | 250 | 125 | 6 | 104 | 344 | 12 | 222 | 1.38e-21 | 93.2 |
| Msa0187720 | MtrunA17_Chr3g0113551 | 39.837 | 123 | 72 | 2 | 187 | 308 | 162 | 283 | 3.83e-18 | 84.3 |
| Msa0187720 | MtrunA17_Chr2g0288901 | 36.607 | 112 | 62 | 3 | 236 | 344 | 5 | 110 | 2.49e-12 | 64.7 |
| Msa0187720 | MtrunA17_Chr2g0288911 | 33.607 | 122 | 60 | 3 | 136 | 237 | 2 | 122 | 6.25e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187720 | AT3G55140.1 | 73.860 | 329 | 86 | 0 | 69 | 397 | 1 | 329 | 0.0 | 523 |
| Msa0187720 | AT3G55140.2 | 74.394 | 289 | 74 | 0 | 109 | 397 | 17 | 305 | 4.65e-166 | 468 |
| Msa0187720 | AT3G09540.1 | 67.278 | 327 | 106 | 1 | 69 | 395 | 48 | 373 | 9.27e-164 | 464 |
| Msa0187720 | AT3G09540.3 | 66.361 | 327 | 105 | 2 | 69 | 395 | 48 | 369 | 2.59e-160 | 456 |
| Msa0187720 | AT3G09540.2 | 73.160 | 231 | 62 | 0 | 69 | 299 | 48 | 278 | 3.62e-127 | 368 |
| Msa0187720 | AT5G55720.1 | 39.929 | 283 | 149 | 6 | 82 | 344 | 66 | 347 | 2.36e-52 | 179 |
| Msa0187720 | AT1G30350.1 | 39.493 | 276 | 155 | 6 | 82 | 347 | 53 | 326 | 5.98e-52 | 178 |
| Msa0187720 | AT1G11920.1 | 41.036 | 251 | 123 | 6 | 82 | 308 | 54 | 303 | 8.37e-47 | 164 |
| Msa0187720 | AT3G54920.1 | 39.785 | 279 | 148 | 7 | 84 | 344 | 99 | 375 | 6.25e-46 | 165 |
| Msa0187720 | AT4G22090.1 | 36.426 | 291 | 158 | 7 | 78 | 344 | 60 | 347 | 1.90e-44 | 159 |
| Msa0187720 | AT4G13710.2 | 37.500 | 288 | 154 | 6 | 82 | 344 | 120 | 406 | 2.03e-43 | 157 |
| Msa0187720 | AT4G13710.1 | 37.500 | 288 | 154 | 6 | 82 | 344 | 139 | 425 | 2.15e-43 | 157 |
| Msa0187720 | AT2G02720.1 | 36.333 | 300 | 162 | 7 | 76 | 347 | 112 | 410 | 2.37e-43 | 157 |
| Msa0187720 | AT4G22080.1 | 38.976 | 254 | 130 | 5 | 82 | 311 | 64 | 316 | 3.23e-43 | 155 |
| Msa0187720 | AT3G27400.1 | 34.667 | 300 | 158 | 5 | 76 | 344 | 75 | 367 | 4.47e-43 | 155 |
| Msa0187720 | AT3G27400.2 | 34.667 | 300 | 158 | 5 | 76 | 344 | 79 | 371 | 4.99e-43 | 155 |
| Msa0187720 | AT5G63180.1 | 36.111 | 288 | 158 | 6 | 82 | 344 | 99 | 385 | 3.71e-42 | 153 |
| Msa0187720 | AT1G67750.1 | 36.364 | 286 | 156 | 6 | 84 | 344 | 79 | 363 | 5.77e-42 | 152 |
| Msa0187720 | AT3G24230.1 | 36.364 | 286 | 156 | 6 | 84 | 344 | 123 | 407 | 5.67e-41 | 150 |
| Msa0187720 | AT1G14420.1 | 35.034 | 294 | 162 | 8 | 82 | 347 | 122 | 414 | 1.52e-40 | 149 |
| Msa0187720 | AT1G04680.1 | 37.153 | 288 | 155 | 6 | 82 | 344 | 98 | 384 | 1.60e-40 | 149 |
| Msa0187720 | AT4G24780.2 | 35.664 | 286 | 158 | 6 | 84 | 344 | 79 | 363 | 8.19e-40 | 146 |
| Msa0187720 | AT4G24780.1 | 35.664 | 286 | 158 | 6 | 84 | 344 | 79 | 363 | 8.19e-40 | 146 |
| Msa0187720 | AT3G01270.1 | 35.593 | 295 | 160 | 8 | 82 | 347 | 142 | 435 | 9.23e-40 | 148 |
| Msa0187720 | AT5G04310.1 | 37.450 | 251 | 136 | 5 | 114 | 344 | 149 | 398 | 1.01e-39 | 148 |
| Msa0187720 | AT5G04310.2 | 37.450 | 251 | 136 | 5 | 114 | 344 | 149 | 398 | 1.01e-39 | 148 |
| Msa0187720 | AT5G04310.3 | 37.063 | 286 | 154 | 6 | 84 | 344 | 114 | 398 | 1.02e-39 | 147 |
| Msa0187720 | AT3G07010.1 | 35.764 | 288 | 159 | 6 | 82 | 344 | 85 | 371 | 1.32e-39 | 146 |
| Msa0187720 | AT3G07010.2 | 35.764 | 288 | 159 | 6 | 82 | 344 | 52 | 338 | 1.42e-39 | 145 |
| Msa0187720 | AT5G48900.1 | 37.063 | 286 | 154 | 7 | 84 | 344 | 88 | 372 | 7.29e-39 | 144 |
| Msa0187720 | AT3G24670.1 | 34.694 | 294 | 166 | 5 | 76 | 344 | 103 | 395 | 1.86e-38 | 144 |
| Msa0187720 | AT4G13210.1 | 36.458 | 288 | 157 | 5 | 82 | 344 | 70 | 356 | 2.09e-38 | 142 |
| Msa0187720 | AT5G15110.1 | 34.694 | 294 | 164 | 8 | 82 | 347 | 139 | 432 | 3.65e-38 | 143 |
| Msa0187720 | AT4G13210.2 | 36.458 | 288 | 157 | 5 | 82 | 344 | 107 | 393 | 4.32e-38 | 142 |
| Msa0187720 | AT3G53190.1 | 37.024 | 289 | 154 | 8 | 82 | 344 | 91 | 377 | 9.98e-38 | 142 |
| Msa0187720 | AT5G09280.1 | 36.100 | 241 | 127 | 7 | 104 | 317 | 12 | 252 | 7.14e-33 | 125 |
Find 98 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATTATTGTAAACTTTC+AGG | 0.161594 | 2_1:+2428708 | None:intergenic |
| ACAATAATTACTCCAGAAAT+TGG | 0.179620 | 2_1:-2430207 | Msa0187720:CDS |
| AGCATATATGCCCCAATTTC+TGG | 0.202085 | 2_1:+2430195 | None:intergenic |
| TCCCAGTCAGCTTAATCTTT+TGG | 0.239290 | 2_1:+2430979 | None:intergenic |
| GAACTATAAACTAACTTTCT+AGG | 0.270064 | 2_1:+2428813 | None:intergenic |
| AATTGGAAGTACCTTGGTTT+TGG | 0.280148 | 2_1:+2432142 | None:intergenic |
| GCTGCTCAAGCTGAAGGTTT+TGG | 0.297527 | 2_1:-2432060 | Msa0187720:CDS |
| ACTTAAAAGCAACCTTCTTC+TGG | 0.299483 | 2_1:+2430011 | None:intergenic |
| TATCATGTTACATCCCTCTT+AGG | 0.300173 | 2_1:-2432003 | Msa0187720:intron |
| TTCATAAACGGTGCTCAATC+AGG | 0.300827 | 2_1:-2429078 | Msa0187720:CDS |
| AACCTAACTCAAAACATATA+TGG | 0.307301 | 2_1:-2430863 | Msa0187720:CDS |
| GCATCTATCATCAACATGTT+TGG | 0.315446 | 2_1:+2430312 | None:intergenic |
| TATGATGATGTTGAGAGTTT+TGG | 0.322478 | 2_1:+2432175 | None:intergenic |
| TGCGCTATCGGTGGACTTGA+TGG | 0.326919 | 2_1:-2432033 | Msa0187720:CDS |
| AGCTGAAGTGGTTGATTTCC+TGG | 0.337901 | 2_1:-2428855 | Msa0187720:three_prime_UTR |
| GGTGGAGGAACCGTGTTGTT+AGG | 0.344716 | 2_1:+2432210 | None:intergenic |
| CAATAATTACTCCAGAAATT+GGG | 0.349008 | 2_1:-2430206 | Msa0187720:CDS |
| GCTCAAACGGCTTGATCCGC+TGG | 0.353881 | 2_1:+2428922 | None:intergenic |
| TACTTTCATTTCAGTTCTGT+TGG | 0.356873 | 2_1:+2432326 | None:intergenic |
| ATTTGTAATTTAGAGATAGA+AGG | 0.357760 | 2_1:-2430921 | Msa0187720:CDS |
| TCATCATACAAGACCATTGA+TGG | 0.390763 | 2_1:-2431008 | Msa0187720:CDS |
| CATCTATCATCAACATGTTT+GGG | 0.400978 | 2_1:+2430313 | None:intergenic |
| GGTCATGTTGATGTTGGAAT+TGG | 0.417636 | 2_1:+2432125 | None:intergenic |
| TTCTGGAGTAATTATTGTAC+AGG | 0.426406 | 2_1:+2430212 | None:intergenic |
| GTTCTGTTGGATTGTTGTAA+AGG | 0.428046 | 2_1:+2432339 | None:intergenic |
| ATCAATCAAATAATTAAGAC+TGG | 0.430889 | 2_1:-2428669 | Msa0187720:three_prime_UTR |
| CCATGTCTGATAGTGTTCAC+TGG | 0.434358 | 2_1:+2429017 | None:intergenic |
| AGCTGACTGGGAAGGGGCTT+AGG | 0.445830 | 2_1:-2430968 | Msa0187720:CDS |
| GACAAGGATGCTGAAGCAAC+TGG | 0.451398 | 2_1:-2429126 | Msa0187720:CDS |
| TGCTTTAGATCATCTGTTGG+AGG | 0.455189 | 2_1:+2428985 | None:intergenic |
| TGTTTGGAACTGTTTGTTGT+TGG | 0.457790 | 2_1:+2432297 | None:intergenic |
| TTCTAGGCCTAAAATAGACT+TGG | 0.459289 | 2_1:+2428829 | None:intergenic |
| CAAGTTCTTCATCACTGTAC+TGG | 0.462941 | 2_1:-2428964 | Msa0187720:CDS |
| GGCTGATGACAGAGAATGTT+GGG | 0.465147 | 2_1:-2429056 | Msa0187720:CDS |
| CTTACCACTGTAAGCTGAAG+TGG | 0.477919 | 2_1:-2428867 | Msa0187720:three_prime_UTR |
| ACTTGCTTTAGATCATCTGT+TGG | 0.479271 | 2_1:+2428982 | None:intergenic |
| TAGCTTCTATTCTGCTCAAA+CGG | 0.479280 | 2_1:+2428909 | None:intergenic |
| AAGATTAAGCTGACTGGGAA+GGG | 0.481642 | 2_1:-2430975 | Msa0187720:CDS |
| GCACTGATATTACTATTTCA+AGG | 0.483855 | 2_1:-2430782 | Msa0187720:intron |
| GGCCAAAAGATTAAGCTGAC+TGG | 0.485115 | 2_1:-2430981 | Msa0187720:CDS |
| GTGGAGGAACCGTGTTGTTA+GGG | 0.486676 | 2_1:+2432211 | None:intergenic |
| CATGACAAAACAATACTCAT+TGG | 0.486741 | 2_1:-2430343 | Msa0187720:CDS |
| CTCTTTGCAGGCAGCAGACA+AGG | 0.492004 | 2_1:-2429142 | Msa0187720:intron |
| TCCCTCGCTGCTCAAGCTGA+AGG | 0.492949 | 2_1:-2432066 | Msa0187720:CDS |
| GAAGGCGACTTATTCATAAA+CGG | 0.505801 | 2_1:-2429090 | Msa0187720:CDS |
| TATGAATGCAGATGATGGAC+CGG | 0.508400 | 2_1:-2431123 | Msa0187720:intron |
| AAAGAGTAAACAAACCTAAG+AGG | 0.509222 | 2_1:+2431989 | None:intergenic |
| CAGCTTGAGCAGCGAGGGAA+CGG | 0.510186 | 2_1:+2432070 | None:intergenic |
| TCTAGGCCTAAAATAGACTT+GGG | 0.510505 | 2_1:+2428830 | None:intergenic |
| CATCCATCGCGCAATGATCC+CGG | 0.510688 | 2_1:+2431104 | None:intergenic |
| ATCTGAATAGCATCAACATC+AGG | 0.513051 | 2_1:+2430888 | None:intergenic |
| TGGTATTTATAAGGTGGTGG+AGG | 0.520644 | 2_1:+2432195 | None:intergenic |
| CTTTCAGGTCTTGAGAGTGT+TGG | 0.524555 | 2_1:+2428723 | None:intergenic |
| GAGATGTCGGCGTTAACGTA+AGG | 0.529596 | 2_1:+2432096 | None:intergenic |
| CTATGAAGCGGGCCAGAAGA+AGG | 0.533381 | 2_1:-2430023 | Msa0187720:CDS |
| ACCTTCAGCTTGAGCAGCGA+GGG | 0.534366 | 2_1:+2432065 | None:intergenic |
| CATGTCTGATAGTGTTCACT+GGG | 0.542482 | 2_1:+2429018 | None:intergenic |
| CAACATAATATCTATGAAGC+GGG | 0.543319 | 2_1:-2430034 | Msa0187720:CDS |
| AATAATTACTCCAGAAATTG+GGG | 0.544303 | 2_1:-2430205 | Msa0187720:CDS |
| TGCTTTCAGCATGATCTACT+AGG | 0.549734 | 2_1:-2428751 | Msa0187720:three_prime_UTR |
| CAAAGTGGTCATGTTGATGT+TGG | 0.556472 | 2_1:+2432119 | None:intergenic |
| ATGAATGCAGATGATGGACC+GGG | 0.556549 | 2_1:-2431122 | Msa0187720:intron |
| AGATTAAGCTGACTGGGAAG+GGG | 0.563249 | 2_1:-2430974 | Msa0187720:CDS |
| TTTGGCCGTTGCGCTATCGG+TGG | 0.566733 | 2_1:-2432042 | Msa0187720:CDS |
| TTGTGCAAGTGTGGAATCCC+AGG | 0.568592 | 2_1:-2430170 | Msa0187720:intron |
| GCCAAAAGATTAAGCTGACT+GGG | 0.568791 | 2_1:-2430980 | Msa0187720:CDS |
| AAAGATTAAGCTGACTGGGA+AGG | 0.569293 | 2_1:-2430976 | Msa0187720:CDS |
| TTAGAGATAGAAGGAGGCAG+AGG | 0.569344 | 2_1:-2430912 | Msa0187720:CDS |
| AAGAGTAAACAAACCTAAGA+GGG | 0.570148 | 2_1:+2431990 | None:intergenic |
| TACAAGACCATTGATGGAAG+GGG | 0.572688 | 2_1:-2431002 | Msa0187720:CDS |
| TCATAAACGGTGCTCAATCA+GGG | 0.583212 | 2_1:-2429077 | Msa0187720:CDS |
| ATACAAGACCATTGATGGAA+GGG | 0.584992 | 2_1:-2431003 | Msa0187720:CDS |
| AGTCGCCTTCAGAAATTATG+TGG | 0.588438 | 2_1:+2429103 | None:intergenic |
| GAGGGAACGGAGAGAGATGT+CGG | 0.589100 | 2_1:+2432083 | None:intergenic |
| GGCGTTAACGTAAGGCAAAG+TGG | 0.598180 | 2_1:+2432104 | None:intergenic |
| TTCTTCATCACTGTACTGGA+TGG | 0.600650 | 2_1:-2428960 | Msa0187720:CDS |
| CCAGTGAACACTATCAGACA+TGG | 0.604784 | 2_1:-2429017 | Msa0187720:CDS |
| TGTTGGAATTGGAAGTACCT+TGG | 0.607850 | 2_1:+2432136 | None:intergenic |
| ACAACATAATATCTATGAAG+CGG | 0.610248 | 2_1:-2430035 | Msa0187720:CDS |
| TGTAATTTAGAGATAGAAGG+AGG | 0.615428 | 2_1:-2430918 | Msa0187720:CDS |
| CATACAAGACCATTGATGGA+AGG | 0.616815 | 2_1:-2431004 | Msa0187720:CDS |
| ATATGCTGTTTGTGCAAGTG+TGG | 0.616933 | 2_1:-2430179 | Msa0187720:CDS |
| GGGCTGATGACAGAGAATGT+TGG | 0.618156 | 2_1:-2429057 | Msa0187720:CDS |
| CTAGGCCTAAAATAGACTTG+GGG | 0.621735 | 2_1:+2428831 | None:intergenic |
| ACTGGCCACATAATTTCTGA+AGG | 0.637592 | 2_1:-2429108 | Msa0187720:CDS |
| CAAGTCCACCGATAGCGCAA+CGG | 0.641464 | 2_1:+2432037 | None:intergenic |
| GCAATCTGTTGCGAGGCCAG+CGG | 0.644261 | 2_1:-2428938 | Msa0187720:CDS |
| TCAATCAAATAATTAAGACT+GGG | 0.650157 | 2_1:-2428668 | Msa0187720:three_prime_UTR |
| TAGGCCTAAAATAGACTTGG+GGG | 0.653145 | 2_1:+2428832 | None:intergenic |
| AACCTTCAGCTTGAGCAGCG+AGG | 0.660370 | 2_1:+2432064 | None:intergenic |
| GGGCTCATTGATATCACTCG+AGG | 0.673672 | 2_1:-2430807 | Msa0187720:CDS |
| TGTTGATGATAGATGCATGA+AGG | 0.679025 | 2_1:-2430305 | Msa0187720:CDS |
| GGACCGGGATCATTGCGCGA+TGG | 0.683709 | 2_1:-2431107 | Msa0187720:CDS |
| AATCCACCAAACCAAAACCA+AGG | 0.686669 | 2_1:-2432153 | Msa0187720:CDS |
| CTGGATGGCAATCTGTTGCG+AGG | 0.705043 | 2_1:-2428945 | Msa0187720:CDS |
| ACACTATCAGACATGGACAG+TGG | 0.708947 | 2_1:-2429010 | Msa0187720:CDS |
| AAAATGGGTAACGCACACGG+TGG | 0.716888 | 2_1:-2432261 | Msa0187720:CDS |
| TCAACCACTTCAGCTTACAG+TGG | 0.722303 | 2_1:+2428863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATTTTATAAATTTCA+GGG | - | chr2_1:2429650-2429669 | Msa0187720:intron | 10.0% |
| !!! | TTTTAAGTATCAATCAATTT+AGG | - | chr2_1:2429075-2429094 | Msa0187720:CDS | 15.0% |
| !! | TTTAAGTATCAATCAATTTA+GGG | - | chr2_1:2429076-2429095 | Msa0187720:CDS | 15.0% |
| !! | TTATCTTTCATTAATGAAAT+TGG | - | chr2_1:2429408-2429427 | Msa0187720:intron | 15.0% |
| !!! | GTTTCTATTTTATAAATTTC+AGG | - | chr2_1:2429649-2429668 | Msa0187720:intron | 15.0% |
| !!! | TTGATTTTATTAAACCAATT+CGG | - | chr2_1:2429726-2429745 | Msa0187720:intron | 15.0% |
| !! | TAATATTGTTCATAACATAA+AGG | + | chr2_1:2430988-2431007 | None:intergenic | 15.0% |
| !! | AAACTGCTATAAAAAAAATA+GGG | + | chr2_1:2431311-2431330 | None:intergenic | 15.0% |
| !! | AAAACTGCTATAAAAAAAAT+AGG | + | chr2_1:2431312-2431331 | None:intergenic | 15.0% |
| !!! | ATAATTTATACCTTTTCATT+TGG | - | chr2_1:2431704-2431723 | Msa0187720:intron | 15.0% |
| !! | TATTATTATTGTAAACTTTC+AGG | + | chr2_1:2432192-2432211 | None:intergenic | 15.0% |
| !! | ATAAAAAATGCAATAACGAA+TGG | + | chr2_1:2428934-2428953 | None:intergenic | 20.0% |
| !!! | ATCAATGATTTTAGAGTAAA+TGG | - | chr2_1:2429034-2429053 | Msa0187720:CDS | 20.0% |
| !!! | TCAATTTTCCAAATTTAGTA+CGG | - | chr2_1:2429182-2429201 | Msa0187720:intron | 20.0% |
| !! | CAAAACCAATATAAAATCTA+CGG | + | chr2_1:2429263-2429282 | None:intergenic | 20.0% |
| !! | GAAAAACTTATAATTTGGAA+AGG | + | chr2_1:2429314-2429333 | None:intergenic | 20.0% |
| !! | TGTCAGAAAAACTTATAATT+TGG | + | chr2_1:2429319-2429338 | None:intergenic | 20.0% |
| !! | TGACAATTTCATATAAACTA+AGG | - | chr2_1:2429334-2429353 | Msa0187720:intron | 20.0% |
| !! | AGAGAACAATAAATAGTAAA+GGG | - | chr2_1:2429459-2429478 | Msa0187720:intron | 20.0% |
| !! | AAAAATCATAATGTTTCACT+TGG | - | chr2_1:2429497-2429516 | Msa0187720:intron | 20.0% |
| !! | TGCAAAACAAAAACAAAAAT+TGG | + | chr2_1:2429549-2429568 | None:intergenic | 20.0% |
| !! | ATTTGTAATTTAGAGATAGA+AGG | - | chr2_1:2429976-2429995 | Msa0187720:intron | 20.0% |
| !! | TTTCCATTTCAAATTATCAT+TGG | - | chr2_1:2430393-2430412 | Msa0187720:intron | 20.0% |
| !!! | CATTGAATGAAATTGTTATT+AGG | - | chr2_1:2430762-2430781 | Msa0187720:intron | 20.0% |
| !!! | ATGATATGATATGATGATTT+TGG | + | chr2_1:2430818-2430837 | None:intergenic | 20.0% |
| !! | TTACAAAAGAACTTGAAAAA+TGG | - | chr2_1:2431005-2431024 | Msa0187720:CDS | 20.0% |
| !! | TTTGTTTATATCAGATAACT+TGG | - | chr2_1:2431105-2431124 | Msa0187720:CDS | 20.0% |
| !! | TTGTTTATATCAGATAACTT+GGG | - | chr2_1:2431106-2431125 | Msa0187720:CDS | 20.0% |
| !!! | TTTTTATAGCAGTTTTATTC+TGG | - | chr2_1:2431316-2431335 | Msa0187720:intron | 20.0% |
| !!! | ATTTTACTTGTTAATCTTCT+TGG | - | chr2_1:2431565-2431584 | Msa0187720:intron | 20.0% |
| !!! | TTTTACTTGTTAATCTTCTT+GGG | - | chr2_1:2431566-2431585 | Msa0187720:intron | 20.0% |
| !! | GATAAACAACAAGATTAAAT+TGG | - | chr2_1:2431726-2431745 | Msa0187720:intron | 20.0% |
| !! | ATCAATCAAATAATTAAGAC+TGG | - | chr2_1:2432228-2432247 | Msa0187720:CDS | 20.0% |
| !! | TCAATCAAATAATTAAGACT+GGG | - | chr2_1:2432229-2432248 | Msa0187720:CDS | 20.0% |
| !! | TTTTGTGGATGATAAATGTT+TGG | + | chr2_1:2428619-2428638 | None:intergenic | 25.0% |
| ! | ACATTTATCATCCACAAAAA+TGG | - | chr2_1:2428620-2428639 | Msa0187720:three_prime_UTR | 25.0% |
| ! | CATTTATCATCCACAAAAAT+GGG | - | chr2_1:2428621-2428640 | Msa0187720:three_prime_UTR | 25.0% |
| !!! | TGAGAGTTTTGGTATTTATA+AGG | + | chr2_1:2428714-2428733 | None:intergenic | 25.0% |
| ! | TAAAATTGCCGTACTAAATT+TGG | + | chr2_1:2429193-2429212 | None:intergenic | 25.0% |
| !! | TCAATCCGTAGATTTTATAT+TGG | - | chr2_1:2429255-2429274 | Msa0187720:intron | 25.0% |
| ! | GAGAGAACAATAAATAGTAA+AGG | - | chr2_1:2429458-2429477 | Msa0187720:intron | 25.0% |
| ! | TCGTAAAGTAACCTATAATT+TGG | - | chr2_1:2429522-2429541 | Msa0187720:intron | 25.0% |
| ! | CAAAAATTGGTCCAAATTAT+AGG | + | chr2_1:2429536-2429555 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTTTTGCAAAG+TGG | - | chr2_1:2429552-2429571 | Msa0187720:intron | 25.0% |
| !!! | ATCATTACAATTTTGACAAC+CGG | - | chr2_1:2429686-2429705 | Msa0187720:intron | 25.0% |
| ! | AATAAGTAAATCAACATTCC+CGG | + | chr2_1:2429708-2429727 | None:intergenic | 25.0% |
| ! | AACCTAACTCAAAACATATA+TGG | - | chr2_1:2430034-2430053 | Msa0187720:CDS | 25.0% |
| !!! | ATCCATATATGTTTTGAGTT+AGG | + | chr2_1:2430039-2430058 | None:intergenic | 25.0% |
| !!! | ACTTTAAGTGATTTTGAAGA+TGG | - | chr2_1:2430069-2430088 | Msa0187720:intron | 25.0% |
| !!! | CTTTAAGTGATTTTGAAGAT+GGG | - | chr2_1:2430070-2430089 | Msa0187720:intron | 25.0% |
| ! | TCCATATAATCTTTACCAAA+TGG | - | chr2_1:2430262-2430281 | Msa0187720:CDS | 25.0% |
| ! | ACCATTTGGTAAAGATTATA+TGG | + | chr2_1:2430266-2430285 | None:intergenic | 25.0% |
| ! | ATAATCTTTACCAAATGGTT+CGG | - | chr2_1:2430267-2430286 | Msa0187720:CDS | 25.0% |
| ! | AGACCAATGATAATTTGAAA+TGG | + | chr2_1:2430399-2430418 | None:intergenic | 25.0% |
| ! | ACAATAATTACTCCAGAAAT+TGG | - | chr2_1:2430690-2430709 | Msa0187720:intron | 25.0% |
| ! | CAATAATTACTCCAGAAATT+GGG | - | chr2_1:2430691-2430710 | Msa0187720:intron | 25.0% |
| ! | AATAATTACTCCAGAAATTG+GGG | - | chr2_1:2430692-2430711 | Msa0187720:intron | 25.0% |
| ! | TATTATGTTGTGAGAATATC+TGG | + | chr2_1:2430853-2430872 | None:intergenic | 25.0% |
| ! | ACAACATAATATCTATGAAG+CGG | - | chr2_1:2430862-2430881 | Msa0187720:CDS | 25.0% |
| ! | CTAAAAGGTAAAACATAACT+TGG | + | chr2_1:2430952-2430971 | None:intergenic | 25.0% |
| !! | CAAGTTATGTTTTACCTTTT+AGG | - | chr2_1:2430950-2430969 | Msa0187720:CDS | 25.0% |
| !!! | TTTTACCTTTTAGGTTGTAT+TGG | - | chr2_1:2430959-2430978 | Msa0187720:CDS | 25.0% |
| ! | AAAGAACTTGAAAAATGGTT+AGG | - | chr2_1:2431010-2431029 | Msa0187720:CDS | 25.0% |
| ! | GCATGACTTAAGAAAAATAT+CGG | + | chr2_1:2431157-2431176 | None:intergenic | 25.0% |
| ! | TTCCAAATACTAACATTCAT+AGG | - | chr2_1:2431365-2431384 | Msa0187720:intron | 25.0% |
| !! | TTTACTTGTTAATCTTCTTG+GGG | - | chr2_1:2431567-2431586 | Msa0187720:intron | 25.0% |
| !! | TGTTGTTTATCCAAATGAAA+AGG | + | chr2_1:2431717-2431736 | None:intergenic | 25.0% |
| ! | GAACTATAAACTAACTTTCT+AGG | + | chr2_1:2432087-2432106 | None:intergenic | 25.0% |
| !!! | ACTTCTGTATTTTTGTCTAA+AGG | - | chr2_1:2432351-2432370 | Msa0187720:five_prime_UTR | 25.0% |
| TACTTTCATTTCAGTTCTGT+TGG | + | chr2_1:2428574-2428593 | None:intergenic | 30.0% | |
| ! | TTTTGGTATTTATAAGGTGG+TGG | + | chr2_1:2428708-2428727 | None:intergenic | 30.0% |
| !! | GAGTTTTGGTATTTATAAGG+TGG | + | chr2_1:2428711-2428730 | None:intergenic | 30.0% |
| !! | TATGATGATGTTGAGAGTTT+TGG | + | chr2_1:2428725-2428744 | None:intergenic | 30.0% |
| AAGAGTAAACAAACCTAAGA+GGG | + | chr2_1:2428910-2428929 | None:intergenic | 30.0% | |
| AAAGAGTAAACAAACCTAAG+AGG | + | chr2_1:2428911-2428930 | None:intergenic | 30.0% | |
| !! | ATCAATTTAGGGTTGTTTTG+AGG | - | chr2_1:2429087-2429106 | Msa0187720:CDS | 30.0% |
| !!! | TCAATTTAGGGTTGTTTTGA+GGG | - | chr2_1:2429088-2429107 | Msa0187720:CDS | 30.0% |
| CTATGACAAAGAGAGATTAT+AGG | - | chr2_1:2429372-2429391 | Msa0187720:intron | 30.0% | |
| ! | TAGTAAAGGGTATGTATGAT+AGG | - | chr2_1:2429472-2429491 | Msa0187720:intron | 30.0% |
| ! | AGTAAAGGGTATGTATGATA+GGG | - | chr2_1:2429473-2429492 | Msa0187720:intron | 30.0% |
| TTGCAAAGTGGTTTATAATG+TGG | - | chr2_1:2429564-2429583 | Msa0187720:intron | 30.0% | |
| TGCAAAGTGGTTTATAATGT+GGG | - | chr2_1:2429565-2429584 | Msa0187720:intron | 30.0% | |
| !! | TCATTACAATTTTGACAACC+GGG | - | chr2_1:2429687-2429706 | Msa0187720:intron | 30.0% |
| ! | GTTTTTATGAATGCAGATGA+TGG | - | chr2_1:2429769-2429788 | Msa0187720:intron | 30.0% |
| TGTAATTTAGAGATAGAAGG+AGG | - | chr2_1:2429979-2429998 | Msa0187720:intron | 30.0% | |
| ! | GCACTGATATTACTATTTCA+AGG | - | chr2_1:2430115-2430134 | Msa0187720:intron | 30.0% |
| AGATTGTGTCAGTGTATTAT+AGG | - | chr2_1:2430435-2430454 | Msa0187720:intron | 30.0% | |
| CATGACAAAACAATACTCAT+TGG | - | chr2_1:2430554-2430573 | Msa0187720:intron | 30.0% | |
| CATCTATCATCAACATGTTT+GGG | + | chr2_1:2430587-2430606 | None:intergenic | 30.0% | |
| !! | TTCTGGAGTAATTATTGTAC+AGG | + | chr2_1:2430688-2430707 | None:intergenic | 30.0% |
| CAACATAATATCTATGAAGC+GGG | - | chr2_1:2430863-2430882 | Msa0187720:CDS | 30.0% | |
| !! | TTTTAAGTATCTTCACGAGA+AGG | - | chr2_1:2430901-2430920 | Msa0187720:CDS | 30.0% |
| AAATTGTTACACGATGCAAT+TGG | + | chr2_1:2431187-2431206 | None:intergenic | 30.0% | |
| AAACTTAAAATGCAGAGTCA+AGG | + | chr2_1:2431251-2431270 | None:intergenic | 30.0% | |
| TAACTTTAGCTAAGCTGAAT+AGG | - | chr2_1:2431341-2431360 | Msa0187720:intron | 30.0% | |
| TGCCTATGAATGTTAGTATT+TGG | + | chr2_1:2431370-2431389 | None:intergenic | 30.0% | |
| AAAATGTGTTCAGAACAAAC+TGG | + | chr2_1:2431404-2431423 | None:intergenic | 30.0% | |
| GTTCTGTTGGATTGTTGTAA+AGG | + | chr2_1:2428561-2428580 | None:intergenic | 35.0% | |
| !! | TGTTTGGAACTGTTTGTTGT+TGG | + | chr2_1:2428603-2428622 | None:intergenic | 35.0% |
| TGTTGTTAGGGACAGAAAAA+CGG | + | chr2_1:2428677-2428696 | None:intergenic | 35.0% | |
| ! | TTTTTCTGTCCCTAACAACA+CGG | - | chr2_1:2428677-2428696 | Msa0187720:three_prime_UTR | 35.0% |
| !!! | AATTGGAAGTACCTTGGTTT+TGG | + | chr2_1:2428758-2428777 | None:intergenic | 35.0% |
| TATCATGTTACATCCCTCTT+AGG | - | chr2_1:2428894-2428913 | Msa0187720:three_prime_UTR | 35.0% | |
| AAGTGGTTTATAATGTGGGA+TGG | - | chr2_1:2429569-2429588 | Msa0187720:intron | 35.0% | |
| AATGGAGGGTCTAAATTGAT+AGG | - | chr2_1:2429604-2429623 | Msa0187720:intron | 35.0% | |
| ATAGGCGACTGTAAATTGAA+GGG | - | chr2_1:2429622-2429641 | Msa0187720:intron | 35.0% | |
| CTGCATTCATAAAAACCCAA+TGG | + | chr2_1:2429765-2429784 | None:intergenic | 35.0% | |
| !!! | ACCTTTGTGGATTGTTTTTG+AGG | - | chr2_1:2429828-2429847 | Msa0187720:intron | 35.0% |
| ACCTCAAAAACAATCCACAA+AGG | + | chr2_1:2429832-2429851 | None:intergenic | 35.0% | |
| !!! | GTGGATTGTTTTTGAGGTTT+CGG | - | chr2_1:2429834-2429853 | Msa0187720:intron | 35.0% |
| !!! | TGGATTGTTTTTGAGGTTTC+GGG | - | chr2_1:2429835-2429854 | Msa0187720:intron | 35.0% |
| TCATCATACAAGACCATTGA+TGG | - | chr2_1:2429889-2429908 | Msa0187720:intron | 35.0% | |
| ATACAAGACCATTGATGGAA+GGG | - | chr2_1:2429894-2429913 | Msa0187720:intron | 35.0% | |
| ATCTGAATAGCATCAACATC+AGG | + | chr2_1:2430012-2430031 | None:intergenic | 35.0% | |
| TATTTCAAGGTGAGATGAAC+TGG | - | chr2_1:2430128-2430147 | Msa0187720:intron | 35.0% | |
| !! | TGGTTTGGATTTTCTGTAGT+CGG | - | chr2_1:2430148-2430167 | Msa0187720:intron | 35.0% |
| TTGAATCCCATTTACGAAGT+CGG | - | chr2_1:2430232-2430251 | Msa0187720:CDS | 35.0% | |
| ACATCGTCAATCTGAATTCT+CGG | + | chr2_1:2430325-2430344 | None:intergenic | 35.0% | |
| TGAATTCCTTCATTGTTTGC+AGG | - | chr2_1:2430516-2430535 | Msa0187720:intron | 35.0% | |
| GCATCTATCATCAACATGTT+TGG | + | chr2_1:2430588-2430607 | None:intergenic | 35.0% | |
| !! | TGTTGATGATAGATGCATGA+AGG | - | chr2_1:2430592-2430611 | Msa0187720:intron | 35.0% |
| !!! | ATACACCACTGTTTTTTCGA+CGG | - | chr2_1:2430620-2430639 | Msa0187720:intron | 35.0% |
| ! | ACTTTTGCAAATCTAACACG+AGG | + | chr2_1:2430662-2430681 | None:intergenic | 35.0% |
| CAATGAACAGATAATCACCT+GGG | + | chr2_1:2430747-2430766 | None:intergenic | 35.0% | |
| TCAATGAACAGATAATCACC+TGG | + | chr2_1:2430748-2430767 | None:intergenic | 35.0% | |
| ACTTAAAAGCAACCTTCTTC+TGG | + | chr2_1:2430889-2430908 | None:intergenic | 35.0% | |
| GGATTCCAATACAACCTAAA+AGG | + | chr2_1:2430967-2430986 | None:intergenic | 35.0% | |
| !!! | AGATTCTTCTGTTTTAGCTG+TGG | + | chr2_1:2431429-2431448 | None:intergenic | 35.0% |
| GAAGGCGACTTATTCATAAA+CGG | - | chr2_1:2431807-2431826 | Msa0187720:intron | 35.0% | |
| ! | ACTTGCTTTAGATCATCTGT+TGG | + | chr2_1:2431918-2431937 | None:intergenic | 35.0% |
| TAGCTTCTATTCTGCTCAAA+CGG | + | chr2_1:2431991-2432010 | None:intergenic | 35.0% | |
| TCTAGGCCTAAAATAGACTT+GGG | + | chr2_1:2432070-2432089 | None:intergenic | 35.0% | |
| TTCTAGGCCTAAAATAGACT+TGG | + | chr2_1:2432071-2432090 | None:intergenic | 35.0% | |
| ACAAAAATGGGTAACGCACA+CGG | - | chr2_1:2428633-2428652 | Msa0187720:three_prime_UTR | 40.0% | |
| ! | TGGTATTTATAAGGTGGTGG+AGG | + | chr2_1:2428705-2428724 | None:intergenic | 40.0% |
| AATCCACCAAACCAAAACCA+AGG | - | chr2_1:2428744-2428763 | Msa0187720:three_prime_UTR | 40.0% | |
| !!! | GAAGTACCTTGGTTTTGGTT+TGG | + | chr2_1:2428753-2428772 | None:intergenic | 40.0% |
| !! | TGTTGGAATTGGAAGTACCT+TGG | + | chr2_1:2428764-2428783 | None:intergenic | 40.0% |
| GGTCATGTTGATGTTGGAAT+TGG | + | chr2_1:2428775-2428794 | None:intergenic | 40.0% | |
| CAAAGTGGTCATGTTGATGT+TGG | + | chr2_1:2428781-2428800 | None:intergenic | 40.0% | |
| TGGTTTATAATGTGGGATGG+AGG | - | chr2_1:2429572-2429591 | Msa0187720:intron | 40.0% | |
| GGTTTATAATGTGGGATGGA+GGG | - | chr2_1:2429573-2429592 | Msa0187720:intron | 40.0% | |
| !!! | GGATGGAGGGAGTATTTTAA+TGG | - | chr2_1:2429586-2429605 | Msa0187720:intron | 40.0% |
| !!! | TGGAGGGAGTATTTTAATGG+AGG | - | chr2_1:2429589-2429608 | Msa0187720:intron | 40.0% |
| !!! | GGAGGGAGTATTTTAATGGA+GGG | - | chr2_1:2429590-2429609 | Msa0187720:intron | 40.0% |
| GATAGGCGACTGTAAATTGA+AGG | - | chr2_1:2429621-2429640 | Msa0187720:intron | 40.0% | |
| GATCAATGTTACAGCCGAAT+TGG | + | chr2_1:2429743-2429762 | None:intergenic | 40.0% | |
| GGCTGTAACATTGATCCATT+GGG | - | chr2_1:2429747-2429766 | Msa0187720:intron | 40.0% | |
| !! | TATGAATGCAGATGATGGAC+CGG | - | chr2_1:2429774-2429793 | Msa0187720:intron | 40.0% |
| GTCGCAAAAAAGAACCTTTG+TGG | - | chr2_1:2429815-2429834 | Msa0187720:intron | 40.0% | |
| CATACAAGACCATTGATGGA+AGG | - | chr2_1:2429893-2429912 | Msa0187720:intron | 40.0% | |
| TACAAGACCATTGATGGAAG+GGG | - | chr2_1:2429895-2429914 | Msa0187720:intron | 40.0% | |
| GCCAAAAGATTAAGCTGACT+GGG | - | chr2_1:2429917-2429936 | Msa0187720:intron | 40.0% | |
| ! | TCCCAGTCAGCTTAATCTTT+TGG | + | chr2_1:2429921-2429940 | None:intergenic | 40.0% |
| AAAGATTAAGCTGACTGGGA+AGG | - | chr2_1:2429921-2429940 | Msa0187720:intron | 40.0% | |
| AAGATTAAGCTGACTGGGAA+GGG | - | chr2_1:2429922-2429941 | Msa0187720:intron | 40.0% | |
| ! | GGTTTGGATTTTCTGTAGTC+GGG | - | chr2_1:2430149-2430168 | Msa0187720:intron | 40.0% |
| ! | TAGTCGGGAAATTTTCTGTC+AGG | - | chr2_1:2430164-2430183 | Msa0187720:intron | 40.0% |
| AGGCAATTTAGTCCATCCAA+CGG | - | chr2_1:2430184-2430203 | Msa0187720:CDS | 40.0% | |
| CATGTTCCGACTTCGTAAAT+GGG | + | chr2_1:2430241-2430260 | None:intergenic | 40.0% | |
| TCATGTTCCGACTTCGTAAA+TGG | + | chr2_1:2430242-2430261 | None:intergenic | 40.0% | |
| ATGACACCTGCAAACAATGA+AGG | + | chr2_1:2430525-2430544 | None:intergenic | 40.0% | |
| GTCGAAAAAACAGTGGTGTA+TGG | + | chr2_1:2430621-2430640 | None:intergenic | 40.0% | |
| AGCATATATGCCCCAATTTC+TGG | + | chr2_1:2430705-2430724 | None:intergenic | 40.0% | |
| ! | ATATGCTGTTTGTGCAAGTG+TGG | - | chr2_1:2430718-2430737 | Msa0187720:intron | 40.0% |
| TGTCTGCCTCTTATGTTTAG+TGG | - | chr2_1:2430926-2430945 | Msa0187720:CDS | 40.0% | |
| ACTTGGCCACTAAACATAAG+AGG | + | chr2_1:2430935-2430954 | None:intergenic | 40.0% | |
| TGTTACACGATGCAATTGGT+TGG | + | chr2_1:2431183-2431202 | None:intergenic | 40.0% | |
| AAAATGCAGAGTCAAGGCTA+AGG | + | chr2_1:2431245-2431264 | None:intergenic | 40.0% | |
| ! | AATTGGTGACATCTCTTTGC+AGG | - | chr2_1:2431743-2431762 | Msa0187720:intron | 40.0% |
| ACTGGCCACATAATTTCTGA+AGG | - | chr2_1:2431789-2431808 | Msa0187720:intron | 40.0% | |
| AGTCGCCTTCAGAAATTATG+TGG | + | chr2_1:2431797-2431816 | None:intergenic | 40.0% | |
| TTCATAAACGGTGCTCAATC+AGG | - | chr2_1:2431819-2431838 | Msa0187720:intron | 40.0% | |
| TCATAAACGGTGCTCAATCA+GGG | - | chr2_1:2431820-2431839 | Msa0187720:intron | 40.0% | |
| ! | CATGTCTGATAGTGTTCACT+GGG | + | chr2_1:2431882-2431901 | None:intergenic | 40.0% |
| ! | TGCTTTAGATCATCTGTTGG+AGG | + | chr2_1:2431915-2431934 | None:intergenic | 40.0% |
| CAAGTTCTTCATCACTGTAC+TGG | - | chr2_1:2431933-2431952 | Msa0187720:intron | 40.0% | |
| TTCTTCATCACTGTACTGGA+TGG | - | chr2_1:2431937-2431956 | Msa0187720:intron | 40.0% | |
| TAGGCCTAAAATAGACTTGG+GGG | + | chr2_1:2432068-2432087 | None:intergenic | 40.0% | |
| CTAGGCCTAAAATAGACTTG+GGG | + | chr2_1:2432069-2432088 | None:intergenic | 40.0% | |
| TGCTTTCAGCATGATCTACT+AGG | - | chr2_1:2432146-2432165 | Msa0187720:CDS | 40.0% | |
| !! | GTGTGCGTTACCCATTTTTG+TGG | + | chr2_1:2428634-2428653 | None:intergenic | 45.0% |
| !!! | GTACCTTGGTTTTGGTTTGG+TGG | + | chr2_1:2428750-2428769 | None:intergenic | 45.0% |
| CGGCTGTAACATTGATCCAT+TGG | - | chr2_1:2429746-2429765 | Msa0187720:intron | 45.0% | |
| !! | ATGAATGCAGATGATGGACC+GGG | - | chr2_1:2429775-2429794 | Msa0187720:intron | 45.0% |
| GGCCAAAAGATTAAGCTGAC+TGG | - | chr2_1:2429916-2429935 | Msa0187720:intron | 45.0% | |
| AGATTAAGCTGACTGGGAAG+GGG | - | chr2_1:2429923-2429942 | Msa0187720:intron | 45.0% | |
| TTAGAGATAGAAGGAGGCAG+AGG | - | chr2_1:2429985-2430004 | Msa0187720:intron | 45.0% | |
| CAAGGTGAGATGAACTGGTT+TGG | - | chr2_1:2430133-2430152 | Msa0187720:intron | 45.0% | |
| AATGCATGTTGTCCGTTGGA+TGG | + | chr2_1:2430199-2430218 | None:intergenic | 45.0% | |
| TCAGAATGCATGTTGTCCGT+TGG | + | chr2_1:2430203-2430222 | None:intergenic | 45.0% | |
| GTCATGCAAACCGAACCATT+TGG | + | chr2_1:2430280-2430299 | None:intergenic | 45.0% | |
| ! | GAGTACCGTCGAAAAAACAG+TGG | + | chr2_1:2430628-2430647 | None:intergenic | 45.0% |
| TTCACCTCTTGTTCCTCTCA+AGG | - | chr2_1:2431278-2431297 | Msa0187720:intron | 45.0% | |
| TCACCTCTTGTTCCTCTCAA+GGG | - | chr2_1:2431279-2431298 | Msa0187720:intron | 45.0% | |
| ACTTTCCATACCACTTGTCG+AGG | - | chr2_1:2431457-2431476 | Msa0187720:intron | 45.0% | |
| GGCTGATGACAGAGAATGTT+GGG | - | chr2_1:2431841-2431860 | Msa0187720:intron | 45.0% | |
| ! | CCATGTCTGATAGTGTTCAC+TGG | + | chr2_1:2431883-2431902 | None:intergenic | 45.0% |
| CCAGTGAACACTATCAGACA+TGG | - | chr2_1:2431880-2431899 | Msa0187720:intron | 45.0% | |
| ACACTATCAGACATGGACAG+TGG | - | chr2_1:2431887-2431906 | Msa0187720:intron | 45.0% | |
| CTTACCACTGTAAGCTGAAG+TGG | - | chr2_1:2432030-2432049 | Msa0187720:CDS | 45.0% | |
| TCAACCACTTCAGCTTACAG+TGG | + | chr2_1:2432037-2432056 | None:intergenic | 45.0% | |
| ! | AGCTGAAGTGGTTGATTTCC+TGG | - | chr2_1:2432042-2432061 | Msa0187720:CDS | 45.0% |
| ! | CTTTCAGGTCTTGAGAGTGT+TGG | + | chr2_1:2432177-2432196 | None:intergenic | 45.0% |
| AAAATGGGTAACGCACACGG+TGG | - | chr2_1:2428636-2428655 | Msa0187720:three_prime_UTR | 50.0% | |
| ! | GTGGAGGAACCGTGTTGTTA+GGG | + | chr2_1:2428689-2428708 | None:intergenic | 50.0% |
| GGCGTTAACGTAAGGCAAAG+TGG | + | chr2_1:2428796-2428815 | None:intergenic | 50.0% | |
| GAGATGTCGGCGTTAACGTA+AGG | + | chr2_1:2428804-2428823 | None:intergenic | 50.0% | |
| ! | GCTGCTCAAGCTGAAGGTTT+TGG | - | chr2_1:2428837-2428856 | Msa0187720:three_prime_UTR | 50.0% |
| ! | CTTTTGGCCCCTTCCATCAA+TGG | + | chr2_1:2429905-2429924 | None:intergenic | 50.0% |
| GGGCTCATTGATATCACTCG+AGG | - | chr2_1:2430090-2430109 | Msa0187720:intron | 50.0% | |
| ATTGACGATGTGTGCACGCA+TGG | - | chr2_1:2430334-2430353 | Msa0187720:CDS | 50.0% | |
| TTGACGATGTGTGCACGCAT+GGG | - | chr2_1:2430335-2430354 | Msa0187720:CDS | 50.0% | |
| ! | TTTTCGACGGTACTCGACAG+AGG | - | chr2_1:2430633-2430652 | Msa0187720:intron | 50.0% |
| TTGTGCAAGTGTGGAATCCC+AGG | - | chr2_1:2430727-2430746 | Msa0187720:intron | 50.0% | |
| AAGCCCTTGAGAGGAACAAG+AGG | + | chr2_1:2431285-2431304 | None:intergenic | 50.0% | |
| ATAGGGACAAAGCCCTTGAG+AGG | + | chr2_1:2431294-2431313 | None:intergenic | 50.0% | |
| TCGAGGCTCGAGGGTAAATT+TGG | - | chr2_1:2431474-2431493 | Msa0187720:intron | 50.0% | |
| GACAAGGATGCTGAAGCAAC+TGG | - | chr2_1:2431771-2431790 | Msa0187720:intron | 50.0% | |
| GGGCTGATGACAGAGAATGT+TGG | - | chr2_1:2431840-2431859 | Msa0187720:intron | 50.0% | |
| CTAAAATAGACTTGGGGGCC+AGG | + | chr2_1:2432063-2432082 | None:intergenic | 50.0% | |
| ! | CTGGCCCCCAAGTCTATTTT+AGG | - | chr2_1:2432061-2432080 | Msa0187720:CDS | 50.0% |
| ! | GGTGGAGGAACCGTGTTGTT+AGG | + | chr2_1:2428690-2428709 | None:intergenic | 55.0% |
| GAGGGAACGGAGAGAGATGT+CGG | + | chr2_1:2428817-2428836 | None:intergenic | 55.0% | |
| ACCTTCAGCTTGAGCAGCGA+GGG | + | chr2_1:2428835-2428854 | None:intergenic | 55.0% | |
| AACCTTCAGCTTGAGCAGCG+AGG | + | chr2_1:2428836-2428855 | None:intergenic | 55.0% | |
| !! | GGTTTTGGCCGTTGCGCTAT+CGG | - | chr2_1:2428852-2428871 | Msa0187720:three_prime_UTR | 55.0% |
| CAAGTCCACCGATAGCGCAA+CGG | + | chr2_1:2428863-2428882 | None:intergenic | 55.0% | |
| ! | TGCGCTATCGGTGGACTTGA+TGG | - | chr2_1:2428864-2428883 | Msa0187720:three_prime_UTR | 55.0% |
| CATCCATCGCGCAATGATCC+CGG | + | chr2_1:2429796-2429815 | None:intergenic | 55.0% | |
| CTATGAAGCGGGCCAGAAGA+AGG | - | chr2_1:2430874-2430893 | Msa0187720:CDS | 55.0% | |
| TCGAGCCTCGACAAGTGGTA+TGG | + | chr2_1:2431465-2431484 | None:intergenic | 55.0% | |
| ATACCACTTGTCGAGGCTCG+AGG | - | chr2_1:2431464-2431483 | Msa0187720:intron | 55.0% | |
| TACCACTTGTCGAGGCTCGA+GGG | - | chr2_1:2431465-2431484 | Msa0187720:intron | 55.0% | |
| CTCTTTGCAGGCAGCAGACA+AGG | - | chr2_1:2431755-2431774 | Msa0187720:intron | 55.0% | |
| CTGGATGGCAATCTGTTGCG+AGG | - | chr2_1:2431952-2431971 | Msa0187720:intron | 55.0% | |
| CAGCTTGAGCAGCGAGGGAA+CGG | + | chr2_1:2428830-2428849 | None:intergenic | 60.0% | |
| TCCCTCGCTGCTCAAGCTGA+AGG | - | chr2_1:2428831-2428850 | Msa0187720:three_prime_UTR | 60.0% | |
| TTTGGCCGTTGCGCTATCGG+TGG | - | chr2_1:2428855-2428874 | Msa0187720:three_prime_UTR | 60.0% | |
| AGCTGACTGGGAAGGGGCTT+AGG | - | chr2_1:2429929-2429948 | Msa0187720:intron | 60.0% | |
| TACCCTCGAGCCTCGACAAG+TGG | + | chr2_1:2431470-2431489 | None:intergenic | 60.0% | |
| GCAATCTGTTGCGAGGCCAG+CGG | - | chr2_1:2431959-2431978 | Msa0187720:intron | 60.0% | |
| GCTCAAACGGCTTGATCCGC+TGG | + | chr2_1:2431978-2431997 | None:intergenic | 60.0% | |
| GGACCGGGATCATTGCGCGA+TGG | - | chr2_1:2429790-2429809 | Msa0187720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 2428541 | 2432378 | 2428541 | ID=Msa0187720;Name=Msa0187720 |
| chr2_1 | mRNA | 2428541 | 2432378 | 2428541 | ID=Msa0187720-mRNA-1;Parent=Msa0187720;Name=Msa0187720-mRNA-1;_AED=0.07;_eAED=0.07;_QI=44|1|1|1|1|1|5|383|397 |
| chr2_1 | exon | 2428541 | 2429154 | 2428541 | ID=Msa0187720-mRNA-1:exon:1163;Parent=Msa0187720-mRNA-1 |
| chr2_1 | exon | 2429997 | 2430065 | 2429997 | ID=Msa0187720-mRNA-1:exon:1162;Parent=Msa0187720-mRNA-1 |
| chr2_1 | exon | 2430171 | 2430381 | 2430171 | ID=Msa0187720-mRNA-1:exon:1161;Parent=Msa0187720-mRNA-1 |
| chr2_1 | exon | 2430783 | 2431134 | 2430783 | ID=Msa0187720-mRNA-1:exon:1160;Parent=Msa0187720-mRNA-1 |
| chr2_1 | exon | 2432004 | 2432378 | 2432004 | ID=Msa0187720-mRNA-1:exon:1159;Parent=Msa0187720-mRNA-1 |
| chr2_1 | five_prime_UTR | 2432335 | 2432378 | 2432335 | ID=Msa0187720-mRNA-1:five_prime_utr;Parent=Msa0187720-mRNA-1 |
| chr2_1 | CDS | 2432004 | 2432334 | 2432004 | ID=Msa0187720-mRNA-1:cds;Parent=Msa0187720-mRNA-1 |
| chr2_1 | CDS | 2430783 | 2431134 | 2430783 | ID=Msa0187720-mRNA-1:cds;Parent=Msa0187720-mRNA-1 |
| chr2_1 | CDS | 2430171 | 2430381 | 2430171 | ID=Msa0187720-mRNA-1:cds;Parent=Msa0187720-mRNA-1 |
| chr2_1 | CDS | 2429997 | 2430065 | 2429997 | ID=Msa0187720-mRNA-1:cds;Parent=Msa0187720-mRNA-1 |
| chr2_1 | CDS | 2428924 | 2429154 | 2428924 | ID=Msa0187720-mRNA-1:cds;Parent=Msa0187720-mRNA-1 |
| chr2_1 | three_prime_UTR | 2428541 | 2428923 | 2428541 | ID=Msa0187720-mRNA-1:three_prime_utr;Parent=Msa0187720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
