Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310380 | XP_003593191.1 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310380 | sp|A8MQN2|LNK1_ARATH | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.65e-30 | 130 |
| Msa0310380 | sp|A8MQN2|LNK1_ARATH | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.05e-16 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012260 | Msa0310380 | 0.822509 | 2.281099e-53 | -8.615850e-47 |
| Msa0060970 | Msa0310380 | 0.812677 | 3.758525e-51 | -8.615850e-47 |
| Msa0074310 | Msa0310380 | 0.847942 | 8.402406e-60 | -8.615850e-47 |
| Msa0083200 | Msa0310380 | 0.838256 | 3.204724e-57 | -8.615850e-47 |
| Msa0175480 | Msa0310380 | 0.801170 | 1.021865e-48 | -8.615850e-47 |
| Msa0187720 | Msa0310380 | 0.855224 | 7.281049e-62 | -8.615850e-47 |
| Msa0216010 | Msa0310380 | 0.816745 | 4.718778e-52 | -8.615850e-47 |
| Msa0232290 | Msa0310380 | 0.943235 | 1.734019e-102 | -8.615850e-47 |
| Msa0256170 | Msa0310380 | 0.819317 | 1.237510e-52 | -8.615850e-47 |
| Msa0271740 | Msa0310380 | 0.995675 | 1.071246e-218 | -8.615850e-47 |
| Msa0310380 | Msa0369750 | 0.811033 | 8.570646e-51 | -8.615850e-47 |
| Msa0310380 | Msa0426680 | 0.820998 | 5.100288e-53 | -8.615850e-47 |
| Msa0310380 | Msa0463960 | 0.803087 | 4.121867e-49 | -8.615850e-47 |
| Msa0310380 | Msa0475830 | 0.800155 | 1.645409e-48 | -8.615850e-47 |
| Msa0310380 | Msa0509510 | 0.821981 | 3.024385e-53 | -8.615850e-47 |
| Msa0310380 | Msa0751000 | 0.815391 | 9.469180e-52 | -8.615850e-47 |
| Msa0310380 | Msa0794040 | 0.841981 | 3.416236e-58 | -8.615850e-47 |
| Msa0310380 | Msa1025610 | 0.822056 | 2.904858e-53 | -8.615850e-47 |
| Msa0310380 | Msa1084630 | 0.805531 | 1.276186e-49 | -8.615850e-47 |
| Msa0310380 | Msa1132320 | 0.839144 | 1.889212e-57 | -8.615850e-47 |
| Msa0310380 | Msa1201610 | 0.812622 | 3.864767e-51 | -8.615850e-47 |
| Msa0310380 | Msa1294520 | 0.835182 | 1.947109e-56 | -8.615850e-47 |
| Msa0310380 | Msa1372340 | 0.996708 | 4.084050e-231 | -8.615850e-47 |
| Msa0310380 | Msa1400330 | 0.804278 | 2.332580e-49 | -8.615850e-47 |
| Msa0310380 | Msa1415820 | 0.820612 | 6.257106e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310380 | MtrunA17_Chr2g0279081 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1246 |
| Msa0310380 | MtrunA17_Chr4g0050491 | 55.366 | 587 | 247 | 9 | 67 | 639 | 1 | 586 | 0.0 | 562 |
| Msa0310380 | MtrunA17_Chr3g0083841 | 25.185 | 540 | 304 | 22 | 116 | 595 | 68 | 567 | 1.59e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310380 | AT5G64170.1 | 36.531 | 271 | 139 | 8 | 361 | 620 | 293 | 541 | 1.08e-31 | 130 |
| Msa0310380 | AT5G64170.1 | 35.220 | 159 | 79 | 6 | 77 | 218 | 23 | 174 | 4.34e-15 | 79.0 |
| Msa0310380 | AT5G64170.3 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.68e-31 | 130 |
| Msa0310380 | AT5G64170.3 | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.16e-17 | 84.7 |
| Msa0310380 | AT5G64170.2 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.68e-31 | 130 |
| Msa0310380 | AT5G64170.2 | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.16e-17 | 84.7 |
| Msa0310380 | AT3G54500.6 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 2.76e-16 | 82.8 |
| Msa0310380 | AT3G54500.8 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 2.76e-16 | 82.8 |
| Msa0310380 | AT3G54500.2 | 40.945 | 127 | 59 | 3 | 483 | 595 | 249 | 373 | 2.95e-16 | 82.4 |
| Msa0310380 | AT3G54500.7 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.29e-16 | 82.8 |
| Msa0310380 | AT3G54500.5 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.29e-16 | 82.8 |
| Msa0310380 | AT3G54500.1 | 40.945 | 127 | 59 | 3 | 483 | 595 | 444 | 568 | 3.61e-16 | 82.8 |
| Msa0310380 | AT3G54500.3 | 40.945 | 127 | 59 | 3 | 483 | 595 | 476 | 600 | 4.83e-16 | 82.4 |
| Msa0310380 | AT3G54500.4 | 40.945 | 127 | 59 | 3 | 483 | 595 | 459 | 583 | 5.42e-16 | 82.0 |
Find 155 sgRNAs with CRISPR-Local
Find 457 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGGTATTCTTTCATTT+TGG | 0.096568 | 2_4:+5171199 | None:intergenic |
| TCTTGAGATATGTCATTTAT+TGG | 0.138127 | 2_4:+5170964 | None:intergenic |
| CCACCTGCTGCACAAGATTT+TGG | 0.185924 | 2_4:+5167749 | None:intergenic |
| GGCTGAGAATCAGTTCTTTC+AGG | 0.211228 | 2_4:-5168081 | Msa0310380:CDS |
| CTATGTTCTGCTTATGCTTC+TGG | 0.212108 | 2_4:+5169543 | None:intergenic |
| TTAGAGCATGACTAAATTCT+AGG | 0.239335 | 2_4:+5169474 | None:intergenic |
| TTTGAGCAAGAAGTGATTAT+TGG | 0.248089 | 2_4:+5175379 | None:intergenic |
| AGAAGCTGTGATTTAACTTT+TGG | 0.261648 | 2_4:-5170755 | Msa0310380:CDS |
| AAGATGATGTATAATTATTT+CGG | 0.276339 | 2_4:-5167946 | Msa0310380:three_prime_UTR |
| AACATAGATTCTAATTCTTT+AGG | 0.286126 | 2_4:-5169527 | Msa0310380:CDS |
| TAGTTCTCATGGTCATTCTT+TGG | 0.291046 | 2_4:-5169351 | Msa0310380:CDS |
| AACTGATTCTCAGCCTTTCC+TGG | 0.302412 | 2_4:+5168089 | None:intergenic |
| TTTCTCAAGGGCAGTGTGTC+TGG | 0.311983 | 2_4:+5172060 | None:intergenic |
| ACTGTCCCTTATGCACAATT+TGG | 0.312260 | 2_4:+5168728 | None:intergenic |
| AGAACTCAATCCTTGTTAAA+TGG | 0.314785 | 2_4:-5171982 | Msa0310380:intron |
| TCACTCTCTTCGACTTTCTC+TGG | 0.316838 | 2_4:-5169443 | Msa0310380:CDS |
| AATGAAAGAATACCAGAAAA+AGG | 0.326428 | 2_4:-5171195 | Msa0310380:CDS |
| TTCTTGCTCAAATCACGTTT+TGG | 0.331757 | 2_4:-5175368 | Msa0310380:intron |
| TATTGCTCAGGAGGAGTATA+AGG | 0.347713 | 2_4:+5169626 | None:intergenic |
| TATTTGCTTCAAGTGAGTTT+TGG | 0.354113 | 2_4:+5169072 | None:intergenic |
| TTGAAGGAAGAAGAGTCTTC+TGG | 0.357979 | 2_4:-5175446 | Msa0310380:five_prime_UTR |
| TCTAGTGGTGTTACTTCTCT+TGG | 0.358437 | 2_4:-5169572 | Msa0310380:CDS |
| CGCTTTCCTGCTGATGACTT+TGG | 0.359406 | 2_4:+5169671 | None:intergenic |
| AAACATATCAGAATACAATA+TGG | 0.374130 | 2_4:-5170609 | Msa0310380:CDS |
| TTACATTTGTGCTGATCATA+AGG | 0.375300 | 2_4:-5167828 | Msa0310380:three_prime_UTR |
| CATGGCATTCAATGCAAAAC+TGG | 0.375466 | 2_4:+5167897 | None:intergenic |
| TTGAAAGGTGCAATATCGTT+TGG | 0.378904 | 2_4:+5168231 | None:intergenic |
| TTAAAACCAAATTGTGCATA+AGG | 0.389416 | 2_4:-5168734 | Msa0310380:CDS |
| CTAAATTCTAGGTGCGTTGA+AGG | 0.397226 | 2_4:+5169485 | None:intergenic |
| CCTGTTCCAACACCTGTTGC+AGG | 0.401689 | 2_4:+5169039 | None:intergenic |
| ATTGTGTTGGCTACTAGAAT+GGG | 0.405191 | 2_4:+5171350 | None:intergenic |
| GGCTACTAGAATGGGGAACT+TGG | 0.405900 | 2_4:+5171358 | None:intergenic |
| CAATAATCAGTTTGTAATAG+AGG | 0.412345 | 2_4:-5171331 | Msa0310380:CDS |
| TTGGTCCAGAGAAGAGCTTA+TGG | 0.412463 | 2_4:+5169091 | None:intergenic |
| TGTTACAGTTTGAAGATAAC+GGG | 0.418573 | 2_4:-5171410 | Msa0310380:intron |
| TGGTCCAGAGAAGAGCTTAT+GGG | 0.423154 | 2_4:+5169092 | None:intergenic |
| GTGTTACAGTTTGAAGATAA+CGG | 0.424661 | 2_4:-5171411 | Msa0310380:intron |
| TTCTCATGGTCATTCTTTGG+TGG | 0.425898 | 2_4:-5169348 | Msa0310380:CDS |
| ATAATTATTTCGGATTTACT+TGG | 0.425906 | 2_4:-5167936 | Msa0310380:three_prime_UTR |
| TTACAAACTGATTATTGTGT+TGG | 0.431587 | 2_4:+5171337 | None:intergenic |
| GCAGATGATACCATCTTTGA+AGG | 0.435329 | 2_4:-5171024 | Msa0310380:CDS |
| TCGTTTGGAAGCAAAGTTGA+TGG | 0.437120 | 2_4:+5168246 | None:intergenic |
| CTCACCCATAAGCTCTTCTC+TGG | 0.441799 | 2_4:-5169096 | Msa0310380:CDS |
| AATGATGGATGGCTGGATAT+AGG | 0.446315 | 2_4:-5170916 | Msa0310380:CDS |
| AGTGGTAATGTTAGTAGCTA+TGG | 0.448221 | 2_4:-5171261 | Msa0310380:CDS |
| TAAGAAGATAAGATCTCAAA+TGG | 0.449643 | 2_4:-5170519 | Msa0310380:CDS |
| AAATTGTTCGTGCAAGTTGA+AGG | 0.450414 | 2_4:-5175462 | None:intergenic |
| AGAAACATATTGCCGATTAG+TGG | 0.450818 | 2_4:-5172042 | Msa0310380:five_prime_UTR |
| TTCTTCTTCACATGGTGCTG+AGG | 0.451712 | 2_4:-5170693 | Msa0310380:CDS |
| TCTTCTTCACATGGTGCTGA+GGG | 0.452219 | 2_4:-5170692 | Msa0310380:CDS |
| TGTGCTATAGACCGATCAAT+AGG | 0.452786 | 2_4:+5168294 | None:intergenic |
| CGCCTTGAATGTATCATTAG+TGG | 0.453007 | 2_4:-5173149 | Msa0310380:five_prime_UTR |
| TACATTTGTGCTGATCATAA+GGG | 0.455222 | 2_4:-5167827 | Msa0310380:three_prime_UTR |
| AAGAGCAGCAATATAGATTC+TGG | 0.457245 | 2_4:-5171063 | Msa0310380:CDS |
| GTCAAACATCTGTATGTTTG+AGG | 0.458710 | 2_4:-5173103 | Msa0310380:intron |
| CAGTCAAGGTTCTTCTCAGC+AGG | 0.459504 | 2_4:-5169219 | Msa0310380:CDS |
| CATGAATCAGCAAGCAATCC+AGG | 0.459923 | 2_4:-5168107 | Msa0310380:CDS |
| TATTGTGTTGGCTACTAGAA+TGG | 0.460505 | 2_4:+5171349 | None:intergenic |
| CAGCTACACCCACCACTAAT+CGG | 0.461204 | 2_4:+5172030 | None:intergenic |
| TTGCCACCTGCAACAGGTGT+TGG | 0.465856 | 2_4:-5169045 | Msa0310380:CDS |
| AGTGAATCAGACACAAAATC+TGG | 0.466240 | 2_4:-5170455 | Msa0310380:CDS |
| GCTCAGCACTCTTAGCTAAA+CGG | 0.468585 | 2_4:+5168700 | None:intergenic |
| ATTGGATTTCTACCGGTCAA+TGG | 0.471022 | 2_4:-5170569 | Msa0310380:CDS |
| CCTGCAACAGGTGTTGGAAC+AGG | 0.472185 | 2_4:-5169039 | Msa0310380:intron |
| ATCTGGTCATAAAGATGTCT+TGG | 0.473531 | 2_4:-5170438 | Msa0310380:CDS |
| CACCACTAATGATACATTCA+AGG | 0.478639 | 2_4:+5173147 | None:intergenic |
| CCACCAAAATCTTGTGCAGC+AGG | 0.482241 | 2_4:-5167752 | Msa0310380:three_prime_UTR |
| TAAAACCAAATTGTGCATAA+GGG | 0.485364 | 2_4:-5168733 | Msa0310380:CDS |
| TAGCACACTTATTGTTTCAC+AGG | 0.486283 | 2_4:-5168278 | Msa0310380:CDS |
| TTTATGTCTGCATATTGCTC+AGG | 0.486638 | 2_4:+5169614 | None:intergenic |
| CTGAACATTGATAATGAAGC+AGG | 0.487371 | 2_4:+5170476 | None:intergenic |
| ATGAAAACATACCGCTGCAT+TGG | 0.490304 | 2_4:+5168206 | None:intergenic |
| TCCTACTTAAGAGGTGATCA+TGG | 0.490865 | 2_4:+5169282 | None:intergenic |
| CACACACTTGCCTTCAAAGA+TGG | 0.493193 | 2_4:+5171014 | None:intergenic |
| ACAAACGCAAATGGTTGCAT+TGG | 0.499312 | 2_4:-5168663 | Msa0310380:CDS |
| CAATCCAGGTTCAACGTGCT+AGG | 0.506235 | 2_4:-5172116 | Msa0310380:intron |
| TCTTGATAATGATGGATGGC+TGG | 0.506703 | 2_4:-5170923 | Msa0310380:CDS |
| TAAGACAAATCTATAAATGA+AGG | 0.506723 | 2_4:+5169389 | None:intergenic |
| ATAGCTTCATTCAGGTGTAC+AGG | 0.507893 | 2_4:-5168345 | Msa0310380:intron |
| GACTCATACAGAGAAGCAAA+AGG | 0.517130 | 2_4:-5171126 | Msa0310380:CDS |
| ATGAGAACTATCCATGTTTG+AGG | 0.517385 | 2_4:+5169364 | None:intergenic |
| GGGCAAACTTCAGATAATAC+AGG | 0.518134 | 2_4:-5171105 | Msa0310380:CDS |
| CTATGGAACTCTCGGTAAAG+AGG | 0.523194 | 2_4:-5171244 | Msa0310380:CDS |
| CATATTATAACAAACGCAAA+TGG | 0.523301 | 2_4:-5168672 | Msa0310380:CDS |
| GATCTTATCTTCTTATCACC+AGG | 0.526393 | 2_4:+5170527 | None:intergenic |
| GATAAGATCTCAAATGGATG+TGG | 0.526394 | 2_4:-5170513 | Msa0310380:CDS |
| AGAAGTAACACCACTAGAAG+AGG | 0.527293 | 2_4:+5169577 | None:intergenic |
| AGAAAACATTGGATTTCTAC+CGG | 0.528050 | 2_4:-5170576 | Msa0310380:CDS |
| AAAGTTCGAGGGGTTAGTCT+AGG | 0.529625 | 2_4:-5169158 | Msa0310380:CDS |
| AACATATTGCCGATTAGTGG+TGG | 0.529724 | 2_4:-5172039 | Msa0310380:five_prime_UTR |
| TGTCTTGGTGCCGAAAGAAA+AGG | 0.530302 | 2_4:-5170423 | Msa0310380:intron |
| GATTCCTCAAAAGAAAACAT+TGG | 0.531152 | 2_4:-5170587 | Msa0310380:CDS |
| GTTAGTAGCTATGGAACTCT+CGG | 0.540751 | 2_4:-5171252 | Msa0310380:CDS |
| AAGCTTCCAAAGTCATCAGC+AGG | 0.541829 | 2_4:-5169677 | Msa0310380:CDS |
| AATCCAGGTTCAACGTGCTA+GGG | 0.543278 | 2_4:-5172115 | Msa0310380:intron |
| CCGATCAATAGGATTTGTGT+TGG | 0.547237 | 2_4:+5168305 | None:intergenic |
| ACAGCATGATGTGCCAAAGT+TGG | 0.548678 | 2_4:+5167997 | None:intergenic |
| AGTGAAAGTGAAACCAACTT+TGG | 0.550845 | 2_4:-5168010 | Msa0310380:three_prime_UTR |
| CAATTTGAAAATGAAAATGA+AGG | 0.554036 | 2_4:-5169188 | Msa0310380:CDS |
| ATAATGAAGAGGAGTTCTGC+TGG | 0.555764 | 2_4:-5170718 | Msa0310380:CDS |
| ATGCAGAGACACAATGGCTC+AGG | 0.555984 | 2_4:-5168625 | Msa0310380:CDS |
| AATCGGCAATATGTTTCTCA+AGG | 0.556026 | 2_4:+5172047 | None:intergenic |
| TGCATAATGAAGCTCTATGT+CGG | 0.556095 | 2_4:+5170649 | None:intergenic |
| GAAACTTAGACGATGTTGAC+AGG | 0.556327 | 2_4:-5170894 | Msa0310380:CDS |
| CTAGGGATTCAGAAGTGGCT+TGG | 0.558931 | 2_4:-5172098 | Msa0310380:five_prime_UTR |
| TCAAACATGGATAGTTCTCA+TGG | 0.564829 | 2_4:-5169362 | Msa0310380:CDS |
| ATGCTTAATAAACATGACAT+TGG | 0.568380 | 2_4:-5173176 | Msa0310380:five_prime_UTR |
| GAAGGTCATAGTAAAGTTCG+AGG | 0.569058 | 2_4:-5169170 | Msa0310380:CDS |
| CAGATGTTTGACATTCATCT+CGG | 0.573495 | 2_4:+5173114 | None:intergenic |
| CGGTGTGGAGCCTCTTCTAG+TGG | 0.574208 | 2_4:-5169587 | Msa0310380:CDS |
| TTTGTCTTATGCCTCAAACA+TGG | 0.576290 | 2_4:-5169375 | Msa0310380:CDS |
| AGCAAAGTTGATGGATCTGT+CGG | 0.576326 | 2_4:+5168255 | None:intergenic |
| ACCGCTGCATTGGATTTGAA+AGG | 0.582968 | 2_4:+5168216 | None:intergenic |
| ATGTCTGCATATTGCTCAGG+AGG | 0.584113 | 2_4:+5169617 | None:intergenic |
| GAAATGCTATTTCACAGTCA+AGG | 0.584593 | 2_4:-5169233 | Msa0310380:CDS |
| CATGACGAAAATACACCCTC+AGG | 0.584702 | 2_4:+5171156 | None:intergenic |
| AATAATCAGTTTGTAATAGA+GGG | 0.586046 | 2_4:-5171330 | Msa0310380:CDS |
| CCAACACAAATCCTATTGAT+CGG | 0.586181 | 2_4:-5168305 | Msa0310380:CDS |
| GCCATGATCACCTCTTAAGT+AGG | 0.587338 | 2_4:-5169283 | Msa0310380:CDS |
| AAGTTGGTTTCACTTTCACT+AGG | 0.587813 | 2_4:+5168013 | None:intergenic |
| ACTCATACAGAGAAGCAAAA+GGG | 0.591280 | 2_4:-5171125 | Msa0310380:CDS |
| CAGTTTGAAGATAACGGGTG+GGG | 0.592142 | 2_4:-5171405 | Msa0310380:CDS |
| TTATACATCATCTTATACGA+TGG | 0.595888 | 2_4:+5167955 | None:intergenic |
| TTCAAGTTTACCATTTAACA+AGG | 0.596574 | 2_4:+5171972 | None:intergenic |
| ATCTTATCTTCTTATCACCA+GGG | 0.596740 | 2_4:+5170528 | None:intergenic |
| ATCAGCAAGCAATCCAGGAA+AGG | 0.601092 | 2_4:-5168102 | Msa0310380:CDS |
| GCAAATGGTTGCATTGGAGA+TGG | 0.602010 | 2_4:-5168657 | Msa0310380:CDS |
| ACAGTTTGAAGATAACGGGT+GGG | 0.607123 | 2_4:-5171406 | Msa0310380:intron |
| ACGTGCTAGGGATTCAGAAG+TGG | 0.607512 | 2_4:-5172103 | Msa0310380:five_prime_UTR |
| GGAGAGTCTCAATAATGAAG+AGG | 0.607581 | 2_4:-5170729 | Msa0310380:CDS |
| GGATTAAGAGCTGAACATGA+CGG | 0.610788 | 2_4:-5169422 | Msa0310380:CDS |
| CAGTTTGTAATAGAGGGTGA+TGG | 0.614082 | 2_4:-5171324 | Msa0310380:CDS |
| ACCTTTCAAATCCAATGCAG+CGG | 0.619682 | 2_4:-5168217 | Msa0310380:intron |
| ACAAATGTACATCAGTGTCA+TGG | 0.620943 | 2_4:+5167879 | None:intergenic |
| TCTTATCTTCTTATCACCAG+GGG | 0.621499 | 2_4:+5170529 | None:intergenic |
| TACAGTTTGAAGATAACGGG+TGG | 0.624726 | 2_4:-5171407 | Msa0310380:intron |
| ATTGATGCTATAAAGAGTAG+TGG | 0.626262 | 2_4:-5171279 | Msa0310380:CDS |
| TTCATGGTCTGACACACCTG+AGG | 0.629053 | 2_4:-5171172 | Msa0310380:CDS |
| CTTGAATGTATCATTAGTGG+TGG | 0.631648 | 2_4:-5173146 | Msa0310380:five_prime_UTR |
| CAATGGCTCAGGATACAAGC+AGG | 0.636267 | 2_4:-5168614 | Msa0310380:intron |
| CTTTGAAGGCAAGTGTGTGG+TGG | 0.637680 | 2_4:-5171010 | Msa0310380:CDS |
| ATCGGCAATATGTTTCTCAA+GGG | 0.639267 | 2_4:+5172048 | None:intergenic |
| AAGGTCATAGTAAAGTTCGA+GGG | 0.639450 | 2_4:-5169169 | Msa0310380:CDS |
| TCATGGTCTGACACACCTGA+GGG | 0.642015 | 2_4:-5171171 | Msa0310380:CDS |
| TGAAGCATGCAGAGACACAA+TGG | 0.643751 | 2_4:-5168631 | Msa0310380:CDS |
| ACATATTGCCGATTAGTGGT+GGG | 0.646128 | 2_4:-5172038 | Msa0310380:five_prime_UTR |
| TTGTGTTGGCTACTAGAATG+GGG | 0.655577 | 2_4:+5171351 | None:intergenic |
| CCAAAATCTTGTGCAGCAGG+TGG | 0.655848 | 2_4:-5167749 | Msa0310380:three_prime_UTR |
| TGAACATTGATAATGAAGCA+GGG | 0.667170 | 2_4:+5170477 | None:intergenic |
| GTTCCAACACCTGTTGCAGG+TGG | 0.671411 | 2_4:+5169042 | None:intergenic |
| AGCAGCAATATAGATTCTGG+TGG | 0.680935 | 2_4:-5171060 | Msa0310380:CDS |
| AGGTCATAGTAAAGTTCGAG+GGG | 0.696049 | 2_4:-5169168 | Msa0310380:CDS |
| GCAGACATAAATCAGCGGTG+TGG | 0.709486 | 2_4:-5169602 | Msa0310380:CDS |
| CATCTTTGAAGGCAAGTGTG+TGG | 0.715901 | 2_4:-5171013 | Msa0310380:CDS |
| AATATGCAGACATAAATCAG+CGG | 0.754231 | 2_4:-5169607 | Msa0310380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGAAAGATAAATAT+TGG | - | chr2_4:5168685-5168704 | Msa0310380:CDS | 10.0% |
| !! | ATTATCAAATGTTATATTTA+TGG | + | chr2_4:5169218-5169237 | None:intergenic | 10.0% |
| !!! | AACATTTTAACTTTATAAGT+TGG | - | chr2_4:5168351-5168370 | Msa0310380:intron | 15.0% |
| !! | TTGATTTACAAAGAAAAAAT+AGG | + | chr2_4:5168533-5168552 | None:intergenic | 15.0% |
| !!! | AATTGTCAGAATTTAAAATA+GGG | + | chr2_4:5168762-5168781 | None:intergenic | 15.0% |
| !!! | AAATTGTCAGAATTTAAAAT+AGG | + | chr2_4:5168763-5168782 | None:intergenic | 15.0% |
| !!! | GTATTTTTGAACTAAAAATT+GGG | - | chr2_4:5168794-5168813 | Msa0310380:intron | 15.0% |
| !!! | TATTTTTGAACTAAAAATTG+GGG | - | chr2_4:5168795-5168814 | Msa0310380:intron | 15.0% |
| !!! | ATTTTAAAATTTGACAGTTT+TGG | + | chr2_4:5168952-5168971 | None:intergenic | 15.0% |
| !!! | AACTGTCAAATTTTAAAATA+AGG | - | chr2_4:5168953-5168972 | Msa0310380:intron | 15.0% |
| !!! | ACTGTCAAATTTTAAAATAA+GGG | - | chr2_4:5168954-5168973 | Msa0310380:intron | 15.0% |
| !!! | GTATTTTTGAACTAAAAATT+GGG | - | chr2_4:5168794-5168813 | Msa0310380:intron | 15.0% |
| !!! | TATTTTTGAACTAAAAATTG+GGG | - | chr2_4:5168795-5168814 | Msa0310380:intron | 15.0% |
| !!! | ATTTTAAAATTTGACAGTTT+TGG | + | chr2_4:5168952-5168971 | None:intergenic | 15.0% |
| !!! | AACTGTCAAATTTTAAAATA+AGG | - | chr2_4:5168953-5168972 | Msa0310380:intron | 15.0% |
| !!! | ACTGTCAAATTTTAAAATAA+GGG | - | chr2_4:5168954-5168973 | Msa0310380:intron | 15.0% |
| !!! | TACAAAAATAATTTGTCAAA+GGG | + | chr2_4:5169468-5169487 | None:intergenic | 15.0% |
| !! | TAATATTGTATTTCAAATAC+TGG | + | chr2_4:5170061-5170080 | None:intergenic | 15.0% |
| !!! | TATATATTAGTATCTGATTT+TGG | - | chr2_4:5170905-5170924 | Msa0310380:CDS | 15.0% |
| !!! | TTATTTATTTTGTTATACGA+GGG | + | chr2_4:5171372-5171391 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTGTTATACG+AGG | + | chr2_4:5171373-5171392 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTTCTCTTTAT+TGG | - | chr2_4:5171601-5171620 | Msa0310380:intron | 15.0% |
| !!! | TTTCTATTTTTCTCTTTATT+GGG | - | chr2_4:5171602-5171621 | Msa0310380:intron | 15.0% |
| !!! | TTTCTAAAATATAAACATCT+TGG | + | chr2_4:5172947-5172966 | None:intergenic | 15.0% |
| !!! | GAATAACAAAAGAATTTTTT+TGG | + | chr2_4:5174672-5174691 | None:intergenic | 15.0% |
| !! | AAGATGATGTATAATTATTT+CGG | - | chr2_4:5175168-5175187 | Msa0310380:intron | 15.0% |
| !! | GTAAATCTCATAGATATAAA+TGG | + | chr2_4:5167896-5167915 | None:intergenic | 20.0% |
| !!! | AAAATGAACTTCCAATATTT+TGG | - | chr2_4:5168097-5168116 | Msa0310380:CDS | 20.0% |
| !! | AAATTGAAGATCCAAAATAT+TGG | + | chr2_4:5168111-5168130 | None:intergenic | 20.0% |
| !! | TACTGATATAAACATTTATG+AGG | - | chr2_4:5168222-5168241 | Msa0310380:CDS | 20.0% |
| !! | TACAAAGAAAAAATAGGTAT+TGG | + | chr2_4:5168527-5168546 | None:intergenic | 20.0% |
| !!! | TTTTTTCGCCATTTTTATTA+TGG | - | chr2_4:5168645-5168664 | Msa0310380:CDS | 20.0% |
| !! | TCTATAAAAACATGAAACAA+GGG | + | chr2_4:5168674-5168693 | None:intergenic | 20.0% |
| !! | TTCTATAAAAACATGAAACA+AGG | + | chr2_4:5168675-5168694 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTCAAAAATACG+TGG | + | chr2_4:5168793-5168812 | None:intergenic | 20.0% |
| !!! | CGTATTTTTGAACTAAAAAT+TGG | - | chr2_4:5168793-5168812 | Msa0310380:intron | 20.0% |
| !!! | TTTTTAGTTCAAAAATACGT+TGG | + | chr2_4:5168792-5168811 | None:intergenic | 20.0% |
| !!! | CGTATTTTTGAACTAAAAAT+TGG | - | chr2_4:5168793-5168812 | Msa0310380:intron | 20.0% |
| !!! | GTACAAAAATAATTTGTCAA+AGG | + | chr2_4:5169469-5169488 | None:intergenic | 20.0% |
| !!! | TCAAAGATATTTTTCAATCA+TGG | + | chr2_4:5169910-5169929 | None:intergenic | 20.0% |
| !! | TGAAATACAATATTACTTTG+CGG | - | chr2_4:5170066-5170085 | Msa0310380:intron | 20.0% |
| !! | TCACTTCTCAATTATAATAA+TGG | - | chr2_4:5170466-5170485 | Msa0310380:CDS | 20.0% |
| !! | TTATAATAATGGTTCAGTTT+AGG | - | chr2_4:5170477-5170496 | Msa0310380:CDS | 20.0% |
| !! | AAAAAACACTTATTTATGCT+GGG | + | chr2_4:5170517-5170536 | None:intergenic | 20.0% |
| !! | AAAAAAACACTTATTTATGC+TGG | + | chr2_4:5170518-5170537 | None:intergenic | 20.0% |
| !! | TCATATGGTAAATAGTAAAA+AGG | + | chr2_4:5171435-5171454 | None:intergenic | 20.0% |
| !! | AATAATCAGTTTGTAATAGA+GGG | - | chr2_4:5171784-5171803 | Msa0310380:intron | 20.0% |
| !!! | TATTCTGATATGTTTTTCAA+TGG | + | chr2_4:5172500-5172519 | None:intergenic | 20.0% |
| !! | AAACATATCAGAATACAATA+TGG | - | chr2_4:5172505-5172524 | Msa0310380:intron | 20.0% |
| !!! | AATTAACTAACCTTTTCTTT+CGG | + | chr2_4:5172704-5172723 | None:intergenic | 20.0% |
| !!! | TAAGTCATATATTCTAGAAT+GGG | - | chr2_4:5172886-5172905 | Msa0310380:intron | 20.0% |
| !!! | TCATAAATTCTTTCATTTTG+AGG | - | chr2_4:5173251-5173270 | Msa0310380:intron | 20.0% |
| !!! | CATAAATTCTTTCATTTTGA+GGG | - | chr2_4:5173252-5173271 | Msa0310380:intron | 20.0% |
| !! | AACATAGATTCTAATTCTTT+AGG | - | chr2_4:5173587-5173606 | Msa0310380:intron | 20.0% |
| !! | TAAGACAAATCTATAAATGA+AGG | + | chr2_4:5173728-5173747 | None:intergenic | 20.0% |
| !! | GAGTTTCAAAAATGAAAAAA+GGG | - | chr2_4:5173853-5173872 | Msa0310380:intron | 20.0% |
| !! | CAATTTGAAAATGAAAATGA+AGG | - | chr2_4:5173926-5173945 | Msa0310380:intron | 20.0% |
| !! | ATAATTATTTCGGATTTACT+TGG | - | chr2_4:5175178-5175197 | Msa0310380:intron | 20.0% |
| !!! | TTTTTGGATTGACTTATTTG+AGG | - | chr2_4:5168194-5168213 | Msa0310380:intron | 25.0% |
| ! | AGTTGTCACCAAAAAAAAAA+GGG | + | chr2_4:5168261-5168280 | None:intergenic | 25.0% |
| ! | AAGTTGTCACCAAAAAAAAA+AGG | + | chr2_4:5168262-5168281 | None:intergenic | 25.0% |
| ! | AAGGGTAACCATAATAAAAA+TGG | + | chr2_4:5168656-5168675 | None:intergenic | 25.0% |
| !!! | TATTGGCTTAATTGCAATTT+TGG | - | chr2_4:5168702-5168721 | Msa0310380:CDS | 25.0% |
| !!! | GTGATATGTTTTAAATGACT+TGG | - | chr2_4:5168820-5168839 | Msa0310380:intron | 25.0% |
| ! | ATTGTAGACCAAATATTTGA+TGG | - | chr2_4:5168921-5168940 | Msa0310380:intron | 25.0% |
| !!! | GTGATATGTTTTAAATGACT+TGG | - | chr2_4:5168820-5168839 | Msa0310380:intron | 25.0% |
| ! | ATTGTAGACCAAATATTTGA+TGG | - | chr2_4:5168921-5168940 | Msa0310380:intron | 25.0% |
| ! | ATAGATACCTATAATTGCAA+CGG | - | chr2_4:5169388-5169407 | Msa0310380:CDS | 25.0% |
| ! | TTGTATTTCTTTGACTGAAA+AGG | - | chr2_4:5169422-5169441 | Msa0310380:CDS | 25.0% |
| !! | TTTTGTACATAAGTTTTCCA+AGG | - | chr2_4:5169481-5169500 | Msa0310380:CDS | 25.0% |
| !! | TTCATAATTTCTGAAAACAG+TGG | - | chr2_4:5169633-5169652 | Msa0310380:CDS | 25.0% |
| !! | TGAAAAATATCTTTGATGAC+AGG | - | chr2_4:5169914-5169933 | Msa0310380:intron | 25.0% |
| ! | ATGCTTAATAAACATGACAT+TGG | - | chr2_4:5169938-5169957 | Msa0310380:intron | 25.0% |
| ! | GGAGACAATAAAAACAATTA+TGG | + | chr2_4:5170118-5170137 | None:intergenic | 25.0% |
| ! | TCTTATATGGAAACGAATTA+GGG | + | chr2_4:5170184-5170203 | None:intergenic | 25.0% |
| ! | CTATATGATTTCTCAATGAT+AGG | + | chr2_4:5170584-5170603 | None:intergenic | 25.0% |
| ! | CTATCATTGAGAAATCATAT+AGG | - | chr2_4:5170582-5170601 | Msa0310380:CDS | 25.0% |
| ! | AGAAACAATCTCTAATTAAG+CGG | + | chr2_4:5170620-5170639 | None:intergenic | 25.0% |
| ! | ATTTCAATGAATGTGTTACA+GGG | + | chr2_4:5170649-5170668 | None:intergenic | 25.0% |
| !! | TGAAATGATTTTCCTTACTT+TGG | - | chr2_4:5170663-5170682 | Msa0310380:CDS | 25.0% |
| ! | CAGAATGCTTAACATTATAT+GGG | + | chr2_4:5170871-5170890 | None:intergenic | 25.0% |
| ! | ACAGAATGCTTAACATTATA+TGG | + | chr2_4:5170872-5170891 | None:intergenic | 25.0% |
| !! | TTCAAGTTTACCATTTAACA+AGG | + | chr2_4:5171145-5171164 | None:intergenic | 25.0% |
| !! | TCTTTAATATCCCTTTTAAC+TGG | - | chr2_4:5171240-5171259 | Msa0310380:CDS | 25.0% |
| ! | AAAATTCAAATTGAACCTCA+AGG | + | chr2_4:5171281-5171300 | None:intergenic | 25.0% |
| !! | TTGAGGTTCAATTTGAATTT+TGG | - | chr2_4:5171280-5171299 | Msa0310380:CDS | 25.0% |
| !!! | ATTTGAATTTTGGCATGATA+TGG | - | chr2_4:5171290-5171309 | Msa0310380:CDS | 25.0% |
| ! | ATAAAAGCAAACATCTTATG+AGG | - | chr2_4:5171388-5171407 | Msa0310380:CDS | 25.0% |
| ! | TACCATATGATAGAACATTA+CGG | - | chr2_4:5171445-5171464 | Msa0310380:intron | 25.0% |
| !!! | GGTTTGATTTTACGTTTTTA+TGG | - | chr2_4:5171623-5171642 | Msa0310380:intron | 25.0% |
| ! | TTACAAACTGATTATTGTGT+TGG | + | chr2_4:5171780-5171799 | None:intergenic | 25.0% |
| ! | CAATAATCAGTTTGTAATAG+AGG | - | chr2_4:5171783-5171802 | Msa0310380:intron | 25.0% |
| !! | TTCTGGTATTCTTTCATTTT+GGG | + | chr2_4:5171917-5171936 | None:intergenic | 25.0% |
| !!! | TTTCTGGTATTCTTTCATTT+TGG | + | chr2_4:5171918-5171937 | None:intergenic | 25.0% |
| ! | AATGAAAGAATACCAGAAAA+AGG | - | chr2_4:5171919-5171938 | Msa0310380:intron | 25.0% |
| !! | TCTTGAGATATGTCATTTAT+TGG | + | chr2_4:5172153-5172172 | None:intergenic | 25.0% |
| !! | CAATTAATTTTGCAGACAAA+GGG | + | chr2_4:5172291-5172310 | None:intergenic | 25.0% |
| !! | TCAATTAATTTTGCAGACAA+AGG | + | chr2_4:5172292-5172311 | None:intergenic | 25.0% |
| !! | AAATCCAATGTTTTCTTTTG+AGG | + | chr2_4:5172534-5172553 | None:intergenic | 25.0% |
| ! | TAAGAAGATAAGATCTCAAA+TGG | - | chr2_4:5172595-5172614 | Msa0310380:intron | 25.0% |
| !!! | AATTGCATTTTGTTTTGATG+TGG | - | chr2_4:5172720-5172739 | Msa0310380:intron | 25.0% |
| !!! | ATTGCATTTTGTTTTGATGT+GGG | - | chr2_4:5172721-5172740 | Msa0310380:intron | 25.0% |
| !! | GTAAGTCATATATTCTAGAA+TGG | - | chr2_4:5172885-5172904 | Msa0310380:intron | 25.0% |
| ! | TTCCTTAACGTAAAAAATGA+GGG | + | chr2_4:5172987-5173006 | None:intergenic | 25.0% |
| ! | ATTCCTTAACGTAAAAAATG+AGG | + | chr2_4:5172988-5173007 | None:intergenic | 25.0% |
| !!! | GTTTTTGTAAGATGGTTTTA+TGG | - | chr2_4:5173052-5173071 | Msa0310380:intron | 25.0% |
| !!! | ATGGTTTTATGGTATATTCA+TGG | - | chr2_4:5173063-5173082 | Msa0310380:intron | 25.0% |
| ! | TATTAGTTAGAACTCTAATC+AGG | + | chr2_4:5173104-5173123 | None:intergenic | 25.0% |
| !! | TTTCACTATTTTCACTTGAT+TGG | - | chr2_4:5173201-5173220 | Msa0310380:intron | 25.0% |
| ! | TTGTAATACAAAGAAACTGT+TGG | + | chr2_4:5173411-5173430 | None:intergenic | 25.0% |
| ! | GGAGTTTCAAAAATGAAAAA+AGG | - | chr2_4:5173852-5173871 | Msa0310380:intron | 25.0% |
| !! | CTGTTATCAAAATTTTGCAT+AGG | + | chr2_4:5174214-5174233 | None:intergenic | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | - | chr2_4:5174231-5174250 | Msa0310380:intron | 25.0% |
| !!! | ATGTTTTTGTAAACCAAAAG+AGG | - | chr2_4:5174274-5174293 | Msa0310380:intron | 25.0% |
| ! | TTAAAACCAAATTGTGCATA+AGG | - | chr2_4:5174380-5174399 | Msa0310380:intron | 25.0% |
| ! | TAAAACCAAATTGTGCATAA+GGG | - | chr2_4:5174381-5174400 | Msa0310380:intron | 25.0% |
| ! | CATATTATAACAAACGCAAA+TGG | - | chr2_4:5174442-5174461 | Msa0310380:intron | 25.0% |
| !! | TAGACCAAAACAATTCTTTT+TGG | - | chr2_4:5174698-5174717 | Msa0310380:intron | 25.0% |
| !! | AGATCCAAAAAGAATTGTTT+TGG | + | chr2_4:5174705-5174724 | None:intergenic | 25.0% |
| !!! | TAAAAGCTTTTTCTCTACAT+CGG | + | chr2_4:5175071-5175090 | None:intergenic | 25.0% |
| !! | ATGTAGAGAAAAAGCTTTTA+GGG | - | chr2_4:5175071-5175090 | Msa0310380:intron | 25.0% |
| ! | TTATACATCATCTTATACGA+TGG | + | chr2_4:5175162-5175181 | None:intergenic | 25.0% |
| !! | TCTTTTGCTTAAAGATACAA+AGG | + | chr2_4:5175402-5175421 | None:intergenic | 25.0% |
| TTTGAGCAAGAAGTGATTAT+TGG | + | chr2_4:5167738-5167757 | None:intergenic | 30.0% | |
| TTGATTAGAACGTAGAAATC+TGG | - | chr2_4:5168041-5168060 | Msa0310380:CDS | 30.0% | |
| GATGTAGTGTTTGGATAATA+AGG | - | chr2_4:5168066-5168085 | Msa0310380:CDS | 30.0% | |
| GTGTTTGGATAATAAGGAAA+CGG | - | chr2_4:5168072-5168091 | Msa0310380:CDS | 30.0% | |
| ! | TTAATTACTACACGCGTTTT+TGG | - | chr2_4:5168178-5168197 | Msa0310380:intron | 30.0% |
| ! | AACATTTATGAGGTTGTTTC+AGG | - | chr2_4:5168232-5168251 | Msa0310380:CDS | 30.0% |
| ! | ACATTTATGAGGTTGTTTCA+GGG | - | chr2_4:5168233-5168252 | Msa0310380:CDS | 30.0% |
| !! | TTTTTGGTGACAACTTACAA+AGG | - | chr2_4:5168266-5168285 | Msa0310380:CDS | 30.0% |
| TTAACTTCAACTTACAACAC+AGG | + | chr2_4:5168391-5168410 | None:intergenic | 30.0% | |
| GAGAGAAAGTTGTCATAAAA+TGG | + | chr2_4:5168453-5168472 | None:intergenic | 30.0% | |
| !! | AGAAAAAATAGGTATTGGCA+CGG | + | chr2_4:5168522-5168541 | None:intergenic | 30.0% |
| ! | TTTTCACCATATCGAGTATT+TGG | - | chr2_4:5168733-5168752 | Msa0310380:CDS | 30.0% |
| ATGGAAAACTATCAACATCA+AGG | - | chr2_4:5168857-5168876 | Msa0310380:intron | 30.0% | |
| TAGACCAAATATTTGATGGA+GGG | - | chr2_4:5168925-5168944 | Msa0310380:intron | 30.0% | |
| ATGGAAAACTATCAACATCA+AGG | - | chr2_4:5168857-5168876 | Msa0310380:intron | 30.0% | |
| TAGACCAAATATTTGATGGA+GGG | - | chr2_4:5168925-5168944 | Msa0310380:intron | 30.0% | |
| ! | TTTTCACCATTTTGCGAAAT+TGG | + | chr2_4:5169170-5169189 | None:intergenic | 30.0% |
| TTTCGCAAAATGGTGAAAAT+AGG | - | chr2_4:5169171-5169190 | Msa0310380:CDS | 30.0% | |
| TTCGCAAAATGGTGAAAATA+GGG | - | chr2_4:5169172-5169191 | Msa0310380:CDS | 30.0% | |
| AACATACATTAGCTAAGGAA+AGG | + | chr2_4:5169247-5169266 | None:intergenic | 30.0% | |
| TGACAAACATACATTAGCTA+AGG | + | chr2_4:5169252-5169271 | None:intergenic | 30.0% | |
| CTAATGTATGTTTGTCAAAC+TGG | - | chr2_4:5169255-5169274 | Msa0310380:CDS | 30.0% | |
| ! | TTGTCAAACTGGTCTATAAT+TGG | - | chr2_4:5169266-5169285 | Msa0310380:CDS | 30.0% |
| CAGCTTATGAAACTTAAAAC+AGG | - | chr2_4:5169338-5169357 | Msa0310380:CDS | 30.0% | |
| TGATACTAACAGTTCATAAC+CGG | + | chr2_4:5169600-5169619 | None:intergenic | 30.0% | |
| GGGACAAAACAATTTCTATA+AGG | + | chr2_4:5169835-5169854 | None:intergenic | 30.0% | |
| !! | AAATTGTTTTGTCCCTTAGT+TGG | - | chr2_4:5169840-5169859 | Msa0310380:intron | 30.0% |
| CCAATTTGTGACTTTAGATA+CGG | - | chr2_4:5169868-5169887 | Msa0310380:intron | 30.0% | |
| ACTTTAGATACGGTTATGAT+TGG | - | chr2_4:5169878-5169897 | Msa0310380:intron | 30.0% | |
| GTTAAGATTGGAATTTCAAG+TGG | + | chr2_4:5170139-5170158 | None:intergenic | 30.0% | |
| GTCTTATATGGAAACGAATT+AGG | + | chr2_4:5170185-5170204 | None:intergenic | 30.0% | |
| !! | ATCGTATTTGTGGTCTTATA+TGG | + | chr2_4:5170197-5170216 | None:intergenic | 30.0% |
| GAAAAATGTCATCGTATTTG+TGG | + | chr2_4:5170207-5170226 | None:intergenic | 30.0% | |
| !! | TTATCCTGAACTTGTTAAGA+TGG | - | chr2_4:5170287-5170306 | Msa0310380:intron | 30.0% |
| GAGAAGTGACAACTATAAAA+GGG | + | chr2_4:5170455-5170474 | None:intergenic | 30.0% | |
| TGAGAAGTGACAACTATAAA+AGG | + | chr2_4:5170456-5170475 | None:intergenic | 30.0% | |
| GAAACAATCTCTAATTAAGC+GGG | + | chr2_4:5170619-5170638 | None:intergenic | 30.0% | |
| CATTTCAATGAATGTGTTAC+AGG | + | chr2_4:5170650-5170669 | None:intergenic | 30.0% | |
| AGTAGCATAATCTTATAAGC+AGG | - | chr2_4:5170967-5170986 | Msa0310380:CDS | 30.0% | |
| AGAACTCAATCCTTGTTAAA+TGG | - | chr2_4:5171132-5171151 | Msa0310380:CDS | 30.0% | |
| TATCTGATGACCAGTTAAAA+GGG | + | chr2_4:5171253-5171272 | None:intergenic | 30.0% | |
| TTATCTGATGACCAGTTAAA+AGG | + | chr2_4:5171254-5171273 | None:intergenic | 30.0% | |
| TTGTGGTAAAAAATTGACCT+CGG | + | chr2_4:5171318-5171337 | None:intergenic | 30.0% | |
| TACTGATATCAGCAGTAAAA+AGG | + | chr2_4:5171532-5171551 | None:intergenic | 30.0% | |
| ATTACTTATGTAATCTGGCA+TGG | + | chr2_4:5171664-5171683 | None:intergenic | 30.0% | |
| AGCACATTACTTATGTAATC+TGG | + | chr2_4:5171669-5171688 | None:intergenic | 30.0% | |
| GTGTTACAGTTTGAAGATAA+CGG | - | chr2_4:5171703-5171722 | Msa0310380:intron | 30.0% | |
| TGTTACAGTTTGAAGATAAC+GGG | - | chr2_4:5171704-5171723 | Msa0310380:intron | 30.0% | |
| ATTGATGCTATAAAGAGTAG+TGG | - | chr2_4:5171835-5171854 | Msa0310380:intron | 30.0% | |
| !!! | CTCAGTTTTCTTGATAATGA+TGG | - | chr2_4:5172183-5172202 | Msa0310380:intron | 30.0% |
| !!! | GTTTTCTTGATAATGATGGA+TGG | - | chr2_4:5172187-5172206 | Msa0310380:intron | 30.0% |
| !! | AGAAGCTGTGATTTAACTTT+TGG | - | chr2_4:5172359-5172378 | Msa0310380:intron | 30.0% |
| !! | CTGTGATTTAACTTTTGGAA+TGG | - | chr2_4:5172364-5172383 | Msa0310380:intron | 30.0% |
| GATTCCTCAAAAGAAAACAT+TGG | - | chr2_4:5172527-5172546 | Msa0310380:intron | 30.0% | |
| AGAAAACATTGGATTTCTAC+CGG | - | chr2_4:5172538-5172557 | Msa0310380:intron | 30.0% | |
| !! | TTTTTGTTTGAACCATTGAC+CGG | + | chr2_4:5172560-5172579 | None:intergenic | 30.0% |
| ATCTTATCTTCTTATCACCA+GGG | + | chr2_4:5172589-5172608 | None:intergenic | 30.0% | |
| !! | TGAACATTGATAATGAAGCA+GGG | + | chr2_4:5172640-5172659 | None:intergenic | 30.0% |
| ! | CGTCTATAGTTTTTGTAAGA+TGG | - | chr2_4:5173044-5173063 | Msa0310380:intron | 30.0% |
| ! | AAAGCACTATTCACGAAAAA+TGG | + | chr2_4:5173176-5173195 | None:intergenic | 30.0% |
| AATTTATGAGTCCTGCATAA+AGG | + | chr2_4:5173240-5173259 | None:intergenic | 30.0% | |
| !! | TCATTTTGAGGGTAATTTGT+TGG | - | chr2_4:5173263-5173282 | Msa0310380:intron | 30.0% |
| !!! | CATTTTGAGGGTAATTTGTT+GGG | - | chr2_4:5173264-5173283 | Msa0310380:intron | 30.0% |
| TCACACTAATAAAATACACC+AGG | + | chr2_4:5173344-5173363 | None:intergenic | 30.0% | |
| AATATGCAGACATAAATCAG+CGG | - | chr2_4:5173507-5173526 | Msa0310380:intron | 30.0% | |
| TTAGAGCATGACTAAATTCT+AGG | + | chr2_4:5173643-5173662 | None:intergenic | 30.0% | |
| !!! | TCTCTTCTCATTAGTTTTTG+AGG | + | chr2_4:5173798-5173817 | None:intergenic | 30.0% |
| !!! | TTTTGAAACTCCTACTTAAG+AGG | + | chr2_4:5173844-5173863 | None:intergenic | 30.0% |
| ! | TATTTGCTTCAAGTGAGTTT+TGG | + | chr2_4:5174045-5174064 | None:intergenic | 30.0% |
| ! | TAATAAACCTTAGCCTCTTT+TGG | + | chr2_4:5174290-5174309 | None:intergenic | 30.0% |
| !! | TTTCACTTTTCAGCAATAAG+TGG | + | chr2_4:5174328-5174347 | None:intergenic | 30.0% |
| TGCAATCAAAAAAAGGTGAT+TGG | + | chr2_4:5174352-5174371 | None:intergenic | 30.0% | |
| ATCCAACTGCAATCAAAAAA+AGG | + | chr2_4:5174359-5174378 | None:intergenic | 30.0% | |
| ATTAATCTGTCTCGATAACA+AGG | - | chr2_4:5174546-5174565 | Msa0310380:intron | 30.0% | |
| ACATGTTTCAATGAAGTAGA+AGG | - | chr2_4:5174939-5174958 | Msa0310380:intron | 30.0% | |
| ! | GATGTAGAGAAAAAGCTTTT+AGG | - | chr2_4:5175070-5175089 | Msa0310380:intron | 30.0% |
| ! | TTACATTTGTGCTGATCATA+AGG | - | chr2_4:5175286-5175305 | Msa0310380:intron | 30.0% |
| ! | TACATTTGTGCTGATCATAA+GGG | - | chr2_4:5175287-5175306 | Msa0310380:intron | 30.0% |
| !!! | GCTTTTTTTTCGCGTTGTTT+GGG | + | chr2_4:5167713-5167732 | None:intergenic | 35.0% |
| !!! | AGCTTTTTTTTCGCGTTGTT+TGG | + | chr2_4:5167714-5167733 | None:intergenic | 35.0% |
| ! | TTCTTGCTCAAATCACGTTT+TGG | - | chr2_4:5167746-5167765 | Msa0310380:three_prime_UTR | 35.0% |
| ! | AATCTGGTTGATGTAGTGTT+TGG | - | chr2_4:5168057-5168076 | Msa0310380:CDS | 35.0% |
| !!! | TCAGGGAACCCTTTTTTTTT+TGG | - | chr2_4:5168250-5168269 | Msa0310380:CDS | 35.0% |
| CTCGATATGGTGAAAATAGT+GGG | + | chr2_4:5168729-5168748 | None:intergenic | 35.0% | |
| ACTCGATATGGTGAAAATAG+TGG | + | chr2_4:5168730-5168749 | None:intergenic | 35.0% | |
| GTAGACCAAATATTTGATGG+AGG | - | chr2_4:5168924-5168943 | Msa0310380:intron | 35.0% | |
| GTAGACCAAATATTTGATGG+AGG | - | chr2_4:5168924-5168943 | Msa0310380:intron | 35.0% | |
| ! | AACTGGTCTATAATTGGTGA+AGG | - | chr2_4:5169272-5169291 | Msa0310380:CDS | 35.0% |
| ! | AATTGGTGAAGGTTTTTACC+AGG | - | chr2_4:5169283-5169302 | Msa0310380:CDS | 35.0% |
| TATAATTGCAACGGTAGTGA+CGG | - | chr2_4:5169397-5169416 | Msa0310380:CDS | 35.0% | |
| TGAACTGTTAGTATCATCGA+TGG | - | chr2_4:5169604-5169623 | Msa0310380:CDS | 35.0% | |
| CACCTGACACACAATATAAT+TGG | - | chr2_4:5169780-5169799 | Msa0310380:intron | 35.0% | |
| TGCCAATTATATTGTGTGTC+AGG | + | chr2_4:5169785-5169804 | None:intergenic | 35.0% | |
| AAATTGGAAACGCCAACTAA+GGG | + | chr2_4:5169855-5169874 | None:intergenic | 35.0% | |
| ! | CCGTATCTAAAGTCACAAAT+TGG | + | chr2_4:5169871-5169890 | None:intergenic | 35.0% |
| CACCACTAATGATACATTCA+AGG | + | chr2_4:5169970-5169989 | None:intergenic | 35.0% | |
| CTTGAATGTATCATTAGTGG+TGG | - | chr2_4:5169968-5169987 | Msa0310380:intron | 35.0% | |
| CAGATGTTTGACATTCATCT+CGG | + | chr2_4:5170003-5170022 | None:intergenic | 35.0% | |
| GTCAAACATCTGTATGTTTG+AGG | - | chr2_4:5170011-5170030 | Msa0310380:intron | 35.0% | |
| GGTGCTTTATGAGTATATTG+TGG | + | chr2_4:5170097-5170116 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTGAGTCACCTT+TGG | - | chr2_4:5170219-5170238 | Msa0310380:intron | 35.0% |
| TAAATGTCTCAAACCCAAAC+TGG | - | chr2_4:5170321-5170340 | Msa0310380:intron | 35.0% | |
| TAACAAGGTTACTCCAGTTT+GGG | + | chr2_4:5170337-5170356 | None:intergenic | 35.0% | |
| AGGTCGTCTAAAAGAATTTG+AGG | + | chr2_4:5170564-5170583 | None:intergenic | 35.0% | |
| GCTAAATATATGGCATCACA+GGG | + | chr2_4:5170692-5170711 | None:intergenic | 35.0% | |
| TGTACATAGAAATGCTCACT+GGG | + | chr2_4:5170722-5170741 | None:intergenic | 35.0% | |
| ATGTACATAGAAATGCTCAC+TGG | + | chr2_4:5170723-5170742 | None:intergenic | 35.0% | |
| CTATCCTATTGCTAATGCTT+TGG | - | chr2_4:5170805-5170824 | Msa0310380:intron | 35.0% | |
| ! | AATGCTTTGGTAGCATATCT+TGG | - | chr2_4:5170818-5170837 | Msa0310380:intron | 35.0% |
| ATCGGCAATATGTTTCTCAA+GGG | + | chr2_4:5171069-5171088 | None:intergenic | 35.0% | |
| AATCGGCAATATGTTTCTCA+AGG | + | chr2_4:5171070-5171089 | None:intergenic | 35.0% | |
| ! | AGAAACATATTGCCGATTAG+TGG | - | chr2_4:5171072-5171091 | Msa0310380:CDS | 35.0% |
| TGAGCAAGATAGGAAAAAAG+TGG | + | chr2_4:5171213-5171232 | None:intergenic | 35.0% | |
| ! | TTTTCCTATCTTGCTCAAGT+CGG | - | chr2_4:5171216-5171235 | Msa0310380:CDS | 35.0% |
| TCATCAGATAAACTTCCTTG+AGG | - | chr2_4:5171263-5171282 | Msa0310380:CDS | 35.0% | |
| !!! | GAGGTCAATTTTTTACCACA+AGG | - | chr2_4:5171317-5171336 | Msa0310380:CDS | 35.0% |
| AAGGTTTCTGAATAACCTTG+TGG | + | chr2_4:5171335-5171354 | None:intergenic | 35.0% | |
| !! | ATTGTGTTGGCTACTAGAAT+GGG | + | chr2_4:5171767-5171786 | None:intergenic | 35.0% |
| !! | TATTGTGTTGGCTACTAGAA+TGG | + | chr2_4:5171768-5171787 | None:intergenic | 35.0% |
| ! | AGTGGTAATGTTAGTAGCTA+TGG | - | chr2_4:5171853-5171872 | Msa0310380:intron | 35.0% |
| GAATACCAGAAAAAGGTTCA+TGG | - | chr2_4:5171926-5171945 | Msa0310380:intron | 35.0% | |
| ACTCATACAGAGAAGCAAAA+GGG | - | chr2_4:5171989-5172008 | Msa0310380:five_prime_UTR | 35.0% | |
| AAGAGCAGCAATATAGATTC+TGG | - | chr2_4:5172051-5172070 | Msa0310380:five_prime_UTR | 35.0% | |
| TTGTAAGAAACCCTCCAATT+TGG | - | chr2_4:5172246-5172265 | Msa0310380:intron | 35.0% | |
| GAAAATTCTGCCAAATTGGA+GGG | + | chr2_4:5172259-5172278 | None:intergenic | 35.0% | |
| TGCATAATGAAGCTCTATGT+CGG | + | chr2_4:5172468-5172487 | None:intergenic | 35.0% | |
| TCTTATCTTCTTATCACCAG+GGG | + | chr2_4:5172588-5172607 | None:intergenic | 35.0% | |
| GATCTTATCTTCTTATCACC+AGG | + | chr2_4:5172590-5172609 | None:intergenic | 35.0% | |
| GATAAGATCTCAAATGGATG+TGG | - | chr2_4:5172601-5172620 | Msa0310380:intron | 35.0% | |
| !! | CTGAACATTGATAATGAAGC+AGG | + | chr2_4:5172641-5172660 | None:intergenic | 35.0% |
| ATCTGGTCATAAAGATGTCT+TGG | - | chr2_4:5172676-5172695 | Msa0310380:intron | 35.0% | |
| TGTGAAGCTATATTTCGATG+TGG | - | chr2_4:5172767-5172786 | Msa0310380:intron | 35.0% | |
| GTGAAGCTATATTTCGATGT+GGG | - | chr2_4:5172768-5172787 | Msa0310380:intron | 35.0% | |
| GGTTCTTTATGAAAACCACA+AGG | - | chr2_4:5172789-5172808 | Msa0310380:intron | 35.0% | |
| ! | ATTTTGTCATGTGCCTTTGA+GGG | + | chr2_4:5172840-5172859 | None:intergenic | 35.0% |
| ! | TATTTTGTCATGTGCCTTTG+AGG | + | chr2_4:5172841-5172860 | None:intergenic | 35.0% |
| TATATGACTTACGAGATCAG+AGG | + | chr2_4:5172877-5172896 | None:intergenic | 35.0% | |
| !! | ATTCTAGAATGGGATTCAAC+CGG | - | chr2_4:5172896-5172915 | Msa0310380:intron | 35.0% |
| CTTAACGTAAAAAATGAGGG+TGG | + | chr2_4:5172984-5173003 | None:intergenic | 35.0% | |
| !!! | CACCCTCATTTTTTACGTTA+AGG | - | chr2_4:5172982-5173001 | Msa0310380:intron | 35.0% |
| ! | ATACTGCTGAGTGTACTTTT+AGG | - | chr2_4:5173133-5173152 | Msa0310380:five_prime_UTR | 35.0% |
| ! | TACTGCTGAGTGTACTTTTA+GGG | - | chr2_4:5173134-5173153 | Msa0310380:five_prime_UTR | 35.0% |
| ACAATGCAAGTTTGATTGCA+AGG | - | chr2_4:5173299-5173318 | Msa0310380:intron | 35.0% | |
| CAATGCAAGTTTGATTGCAA+GGG | - | chr2_4:5173300-5173319 | Msa0310380:intron | 35.0% | |
| TTTATGTCTGCATATTGCTC+AGG | + | chr2_4:5173503-5173522 | None:intergenic | 35.0% | |
| TTTGTCTTATGCCTCAAACA+TGG | - | chr2_4:5173739-5173758 | Msa0310380:intron | 35.0% | |
| ATGAGAACTATCCATGTTTG+AGG | + | chr2_4:5173753-5173772 | None:intergenic | 35.0% | |
| TCAAACATGGATAGTTCTCA+TGG | - | chr2_4:5173752-5173771 | Msa0310380:intron | 35.0% | |
| TAGTTCTCATGGTCATTCTT+TGG | - | chr2_4:5173763-5173782 | Msa0310380:intron | 35.0% | |
| !! | GAAATGCTATTTCACAGTCA+AGG | - | chr2_4:5173881-5173900 | Msa0310380:intron | 35.0% |
| AAGGTCATAGTAAAGTTCGA+GGG | - | chr2_4:5173945-5173964 | Msa0310380:intron | 35.0% | |
| TTGTAAACCAAAAGAGGCTA+AGG | - | chr2_4:5174280-5174299 | Msa0310380:intron | 35.0% | |
| !!! | CACCTTTTTTTGATTGCAGT+TGG | - | chr2_4:5174354-5174373 | Msa0310380:intron | 35.0% |
| GATAACACATAGCTTCATTC+AGG | - | chr2_4:5174761-5174780 | Msa0310380:intron | 35.0% | |
| CCAACACAAATCCTATTGAT+CGG | - | chr2_4:5174809-5174828 | Msa0310380:intron | 35.0% | |
| TAGCACACTTATTGTTTCAC+AGG | - | chr2_4:5174836-5174855 | Msa0310380:intron | 35.0% | |
| ! | TTGAAAGGTGCAATATCGTT+TGG | + | chr2_4:5174886-5174905 | None:intergenic | 35.0% |
| TGAAGTAGAAGGCTATTGTT+TGG | - | chr2_4:5174950-5174969 | Msa0310380:intron | 35.0% | |
| TTAAACCAGAAAATGAGGCT+AGG | + | chr2_4:5174977-5174996 | None:intergenic | 35.0% | |
| GTCAGTTAAACCAGAAAATG+AGG | + | chr2_4:5174982-5175001 | None:intergenic | 35.0% | |
| ! | AAGTTGGTTTCACTTTCACT+AGG | + | chr2_4:5175104-5175123 | None:intergenic | 35.0% |
| AGTGAAAGTGAAACCAACTT+TGG | - | chr2_4:5175104-5175123 | Msa0310380:intron | 35.0% | |
| ACAAATGTACATCAGTGTCA+TGG | + | chr2_4:5175238-5175257 | None:intergenic | 35.0% | |
| TTGAAGGAAGAAGAGTCTTC+TGG | - | chr2_4:5167668-5167687 | Msa0310380:three_prime_UTR | 40.0% | |
| !! | TTTTTCGCGTTGTTTGGGAT+GGG | + | chr2_4:5167708-5167727 | None:intergenic | 40.0% |
| !!! | TTTTTTCGCGTTGTTTGGGA+TGG | + | chr2_4:5167709-5167728 | None:intergenic | 40.0% |
| CTTGGTATATGATGCGATGA+TGG | - | chr2_4:5168838-5168857 | Msa0310380:intron | 40.0% | |
| TGGTCCCTCCATCAAATATT+TGG | + | chr2_4:5168932-5168951 | None:intergenic | 40.0% | |
| CTTGGTATATGATGCGATGA+TGG | - | chr2_4:5168838-5168857 | Msa0310380:intron | 40.0% | |
| TGGTCCCTCCATCAAATATT+TGG | + | chr2_4:5168932-5168951 | None:intergenic | 40.0% | |
| AAGGGACCAATTTCGCAAAA+TGG | - | chr2_4:5169161-5169180 | Msa0310380:CDS | 40.0% | |
| CATTGTGTTAAAGTAGAGCC+TGG | + | chr2_4:5169304-5169323 | None:intergenic | 40.0% | |
| GTCACTACCGTTGCAATTAT+AGG | + | chr2_4:5169398-5169417 | None:intergenic | 40.0% | |
| ! | TAAGTTTTCCAAGGTCACAC+TGG | - | chr2_4:5169490-5169509 | Msa0310380:CDS | 40.0% |
| TCTATTAACCAGTGTGACCT+TGG | + | chr2_4:5169501-5169520 | None:intergenic | 40.0% | |
| ! | ACACTGGTTAATAGAGATCG+TGG | - | chr2_4:5169506-5169525 | Msa0310380:CDS | 40.0% |
| ! | CACTGGTTAATAGAGATCGT+GGG | - | chr2_4:5169507-5169526 | Msa0310380:CDS | 40.0% |
| TACTAACAGTTCATAACCGG+CGG | + | chr2_4:5169597-5169616 | None:intergenic | 40.0% | |
| ! | AGGTGCTACAGATCTAATAG+CGG | + | chr2_4:5169765-5169784 | None:intergenic | 40.0% |
| CAAATTGGAAACGCCAACTA+AGG | + | chr2_4:5169856-5169875 | None:intergenic | 40.0% | |
| CGCCTTGAATGTATCATTAG+TGG | - | chr2_4:5169965-5169984 | Msa0310380:intron | 40.0% | |
| GTTCTGCATCGTGTTAAGAT+TGG | + | chr2_4:5170151-5170170 | None:intergenic | 40.0% | |
| ATATGGAAACGAATTAGGGC+CGG | + | chr2_4:5170180-5170199 | None:intergenic | 40.0% | |
| ! | GGTTTGAGACATTTACTGAC+TGG | + | chr2_4:5170316-5170335 | None:intergenic | 40.0% |
| GTAACAAGGTTACTCCAGTT+TGG | + | chr2_4:5170338-5170357 | None:intergenic | 40.0% | |
| CTTGTTACCTTGTGATCTCA+CGG | - | chr2_4:5170350-5170369 | Msa0310380:intron | 40.0% | |
| TCTTATTCCGTGAGATCACA+AGG | + | chr2_4:5170360-5170379 | None:intergenic | 40.0% | |
| CGCTAAATATATGGCATCAC+AGG | + | chr2_4:5170693-5170712 | None:intergenic | 40.0% | |
| GGGGAACAACGCTAAATATA+TGG | + | chr2_4:5170702-5170721 | None:intergenic | 40.0% | |
| GTACATAGAAATGCTCACTG+GGG | + | chr2_4:5170721-5170740 | None:intergenic | 40.0% | |
| ! | GCTACCAAAGCATTAGCAAT+AGG | + | chr2_4:5170812-5170831 | None:intergenic | 40.0% |
| ! | AACATATTGCCGATTAGTGG+TGG | - | chr2_4:5171075-5171094 | Msa0310380:CDS | 40.0% |
| ! | ACATATTGCCGATTAGTGGT+GGG | - | chr2_4:5171076-5171095 | Msa0310380:CDS | 40.0% |
| TGTTGCAAGCAAAGAGTAGA+AGG | + | chr2_4:5171187-5171206 | None:intergenic | 40.0% | |
| AGGTTATTCAGAAACCTTGC+AGG | - | chr2_4:5171337-5171356 | Msa0310380:CDS | 40.0% | |
| GGTTATTCAGAAACCTTGCA+GGG | - | chr2_4:5171338-5171357 | Msa0310380:CDS | 40.0% | |
| CGCCGTAATGTTCTATCATA+TGG | + | chr2_4:5171450-5171469 | None:intergenic | 40.0% | |
| AACAACCAAACCACTAAGTG+GGG | + | chr2_4:5171494-5171513 | None:intergenic | 40.0% | |
| CAACAACCAAACCACTAAGT+GGG | + | chr2_4:5171495-5171514 | None:intergenic | 40.0% | |
| ACAACAACCAAACCACTAAG+TGG | + | chr2_4:5171496-5171515 | None:intergenic | 40.0% | |
| !! | TACAGTTTGAAGATAACGGG+TGG | - | chr2_4:5171707-5171726 | Msa0310380:intron | 40.0% |
| !! | ACAGTTTGAAGATAACGGGT+GGG | - | chr2_4:5171708-5171727 | Msa0310380:intron | 40.0% |
| !! | TTGTGTTGGCTACTAGAATG+GGG | + | chr2_4:5171766-5171785 | None:intergenic | 40.0% |
| CAGTTTGTAATAGAGGGTGA+TGG | - | chr2_4:5171790-5171809 | Msa0310380:intron | 40.0% | |
| GTTAGTAGCTATGGAACTCT+CGG | - | chr2_4:5171862-5171881 | Msa0310380:intron | 40.0% | |
| ! | TCAGACCATGAACCTTTTTC+TGG | + | chr2_4:5171934-5171953 | None:intergenic | 40.0% |
| ! | GGTGTATTTTCGTCATGTGA+TGG | - | chr2_4:5171964-5171983 | Msa0310380:intron | 40.0% |
| GACTCATACAGAGAAGCAAA+AGG | - | chr2_4:5171988-5172007 | Msa0310380:five_prime_UTR | 40.0% | |
| GGGCAAACTTCAGATAATAC+AGG | - | chr2_4:5172009-5172028 | Msa0310380:five_prime_UTR | 40.0% | |
| AGCAGCAATATAGATTCTGG+TGG | - | chr2_4:5172054-5172073 | Msa0310380:five_prime_UTR | 40.0% | |
| GCAGATGATACCATCTTTGA+AGG | - | chr2_4:5172090-5172109 | Msa0310380:five_prime_UTR | 40.0% | |
| !! | TCTTGATAATGATGGATGGC+TGG | - | chr2_4:5172191-5172210 | Msa0310380:intron | 40.0% |
| !! | AATGATGGATGGCTGGATAT+AGG | - | chr2_4:5172198-5172217 | Msa0310380:intron | 40.0% |
| GAAACTTAGACGATGTTGAC+AGG | - | chr2_4:5172220-5172239 | Msa0310380:intron | 40.0% | |
| GGAAAATTCTGCCAAATTGG+AGG | + | chr2_4:5172260-5172279 | None:intergenic | 40.0% | |
| TGGGGAAAATTCTGCCAAAT+TGG | + | chr2_4:5172263-5172282 | None:intergenic | 40.0% | |
| TTGCAGACAAAGGGAAAGAT+GGG | + | chr2_4:5172282-5172301 | None:intergenic | 40.0% | |
| TTTGCAGACAAAGGGAAAGA+TGG | + | chr2_4:5172283-5172302 | None:intergenic | 40.0% | |
| GGAGAGTCTCAATAATGAAG+AGG | - | chr2_4:5172385-5172404 | Msa0310380:intron | 40.0% | |
| ATAATGAAGAGGAGTTCTGC+TGG | - | chr2_4:5172396-5172415 | Msa0310380:intron | 40.0% | |
| !!! | TGCTGGTTTTCTTCTTCACA+TGG | - | chr2_4:5172413-5172432 | Msa0310380:intron | 40.0% |
| ATTGGATTTCTACCGGTCAA+TGG | - | chr2_4:5172545-5172564 | Msa0310380:intron | 40.0% | |
| TCAAACAAAAAGTCATCCCC+TGG | - | chr2_4:5172569-5172588 | Msa0310380:intron | 40.0% | |
| GGAAATTTGTATGAGCCTTG+TGG | + | chr2_4:5172807-5172826 | None:intergenic | 40.0% | |
| TCCATATGATGATCCCTCAA+AGG | - | chr2_4:5172824-5172843 | Msa0310380:intron | 40.0% | |
| AACGTAAAAAATGAGGGTGG+AGG | + | chr2_4:5172981-5173000 | None:intergenic | 40.0% | |
| ATTGTGCTTGACCTTTATGC+AGG | - | chr2_4:5173226-5173245 | Msa0310380:intron | 40.0% | |
| TCAGCAGGAAAGCGAAAAAA+TGG | - | chr2_4:5173452-5173471 | Msa0310380:intron | 40.0% | |
| ! | TATTGCTCAGGAGGAGTATA+AGG | + | chr2_4:5173491-5173510 | None:intergenic | 40.0% |
| AGAAGTAACACCACTAGAAG+AGG | + | chr2_4:5173540-5173559 | None:intergenic | 40.0% | |
| !! | TCTAGTGGTGTTACTTCTCT+TGG | - | chr2_4:5173542-5173561 | Msa0310380:intron | 40.0% |
| CTATGTTCTGCTTATGCTTC+TGG | + | chr2_4:5173574-5173593 | None:intergenic | 40.0% | |
| CTAAATTCTAGGTGCGTTGA+AGG | + | chr2_4:5173632-5173651 | None:intergenic | 40.0% | |
| GGATTAAGAGCTGAACATGA+CGG | - | chr2_4:5173692-5173711 | Msa0310380:intron | 40.0% | |
| TTCTCATGGTCATTCTTTGG+TGG | - | chr2_4:5173766-5173785 | Msa0310380:intron | 40.0% | |
| TCCTACTTAAGAGGTGATCA+TGG | + | chr2_4:5173835-5173854 | None:intergenic | 40.0% | |
| GAAGGTCATAGTAAAGTTCG+AGG | - | chr2_4:5173944-5173963 | Msa0310380:intron | 40.0% | |
| AGGTCATAGTAAAGTTCGAG+GGG | - | chr2_4:5173946-5173965 | Msa0310380:intron | 40.0% | |
| TGCACAAACTTGAACATCAC+AGG | + | chr2_4:5174110-5174129 | None:intergenic | 40.0% | |
| ACTGTCCCTTATGCACAATT+TGG | + | chr2_4:5174389-5174408 | None:intergenic | 40.0% | |
| ACAAACGCAAATGGTTGCAT+TGG | - | chr2_4:5174451-5174470 | Msa0310380:intron | 40.0% | |
| ATAGCTTCATTCAGGTGTAC+AGG | - | chr2_4:5174769-5174788 | Msa0310380:intron | 40.0% | |
| CCGATCAATAGGATTTGTGT+TGG | + | chr2_4:5174812-5174831 | None:intergenic | 40.0% | |
| TGTGCTATAGACCGATCAAT+AGG | + | chr2_4:5174823-5174842 | None:intergenic | 40.0% | |
| !! | AGCAAAGTTGATGGATCTGT+CGG | + | chr2_4:5174862-5174881 | None:intergenic | 40.0% |
| TCGTTTGGAAGCAAAGTTGA+TGG | + | chr2_4:5174871-5174890 | None:intergenic | 40.0% | |
| ACCTTTCAAATCCAATGCAG+CGG | - | chr2_4:5174897-5174916 | Msa0310380:intron | 40.0% | |
| ATGAAAACATACCGCTGCAT+TGG | + | chr2_4:5174911-5174930 | None:intergenic | 40.0% | |
| CATGGCATTCAATGCAAAAC+TGG | + | chr2_4:5175220-5175239 | None:intergenic | 40.0% | |
| CTTACAACACAGGCTCTGTT+TGG | + | chr2_4:5168381-5168400 | None:intergenic | 45.0% | |
| TGGCACGGAAATCAAAGCAA+TGG | + | chr2_4:5168507-5168526 | None:intergenic | 45.0% | |
| GGGAGACCAAATACTCGATA+TGG | + | chr2_4:5168742-5168761 | None:intergenic | 45.0% | |
| TAACCACAAGAATTCACCGC+CGG | - | chr2_4:5169578-5169597 | Msa0310380:CDS | 45.0% | |
| CACGATGCAGAACATACAAC+CGG | - | chr2_4:5170158-5170177 | Msa0310380:intron | 45.0% | |
| TGTATGAGAGCAGAGTCCAA+AGG | + | chr2_4:5170238-5170257 | None:intergenic | 45.0% | |
| GCGACCATCTTAACAAGTTC+AGG | + | chr2_4:5170294-5170313 | None:intergenic | 45.0% | |
| CGTGAGATCACAAGGTAACA+AGG | + | chr2_4:5170352-5170371 | None:intergenic | 45.0% | |
| ATCACAGGGATGCCAAAGTA+AGG | + | chr2_4:5170678-5170697 | None:intergenic | 45.0% | |
| AATCCAGGTTCAACGTGCTA+GGG | - | chr2_4:5170999-5171018 | Msa0310380:CDS | 45.0% | |
| GCAAGCAAAGAGTAGAAGGA+AGG | + | chr2_4:5171183-5171202 | None:intergenic | 45.0% | |
| !! | AGAACCGACTTGAGCAAGAT+AGG | + | chr2_4:5171223-5171242 | None:intergenic | 45.0% |
| TTTGGCATGATATGGTTCCG+AGG | - | chr2_4:5171298-5171317 | Msa0310380:CDS | 45.0% | |
| ! | GAGGGAAATTTTACCCTGCA+AGG | + | chr2_4:5171354-5171373 | None:intergenic | 45.0% |
| ACTGCTGATATCAGTAGCAG+TGG | - | chr2_4:5171536-5171555 | Msa0310380:intron | 45.0% | |
| CTGCTGATATCAGTAGCAGT+GGG | - | chr2_4:5171537-5171556 | Msa0310380:intron | 45.0% | |
| !! | CAGTTTGAAGATAACGGGTG+GGG | - | chr2_4:5171709-5171728 | Msa0310380:intron | 45.0% |
| CTATGGAACTCTCGGTAAAG+AGG | - | chr2_4:5171870-5171889 | Msa0310380:intron | 45.0% | |
| CATGACGAAAATACACCCTC+AGG | + | chr2_4:5171961-5171980 | None:intergenic | 45.0% | |
| CACACACTTGCCTTCAAAGA+TGG | + | chr2_4:5172103-5172122 | None:intergenic | 45.0% | |
| ! | CATCTTTGAAGGCAAGTGTG+TGG | - | chr2_4:5172101-5172120 | Msa0310380:five_prime_UTR | 45.0% |
| TGCAGACAAAGGGAAAGATG+GGG | + | chr2_4:5172281-5172300 | None:intergenic | 45.0% | |
| ! | TTCTTCTTCACATGGTGCTG+AGG | - | chr2_4:5172421-5172440 | Msa0310380:intron | 45.0% |
| ! | TCTTCTTCACATGGTGCTGA+GGG | - | chr2_4:5172422-5172441 | Msa0310380:intron | 45.0% |
| !! | TGTCTTGGTGCCGAAAGAAA+AGG | - | chr2_4:5172691-5172710 | Msa0310380:intron | 45.0% |
| ! | GCCTTTGAGGGATCATCATA+TGG | + | chr2_4:5172828-5172847 | None:intergenic | 45.0% |
| CTATGATCACACTCAGAGAC+CGG | + | chr2_4:5172918-5172937 | None:intergenic | 45.0% | |
| TGCAAGTTTGATTGCAAGGG+TGG | - | chr2_4:5173303-5173322 | Msa0310380:intron | 45.0% | |
| GCAAGTTTGATTGCAAGGGT+GGG | - | chr2_4:5173304-5173323 | Msa0310380:intron | 45.0% | |
| !! | TGGGTTAGTTTCTGAATGCC+TGG | - | chr2_4:5173323-5173342 | Msa0310380:intron | 45.0% |
| AAGCTTCCAAAGTCATCAGC+AGG | - | chr2_4:5173437-5173456 | Msa0310380:intron | 45.0% | |
| ATGTCTGCATATTGCTCAGG+AGG | + | chr2_4:5173500-5173519 | None:intergenic | 45.0% | |
| TCACTCTCTTCGACTTTCTC+TGG | - | chr2_4:5173671-5173690 | Msa0310380:intron | 45.0% | |
| GCCATGATCACCTCTTAAGT+AGG | - | chr2_4:5173831-5173850 | Msa0310380:intron | 45.0% | |
| !! | AAAGTTCGAGGGGTTAGTCT+AGG | - | chr2_4:5173956-5173975 | Msa0310380:intron | 45.0% |
| TGGTCCAGAGAAGAGCTTAT+GGG | + | chr2_4:5174025-5174044 | None:intergenic | 45.0% | |
| TTGGTCCAGAGAAGAGCTTA+TGG | + | chr2_4:5174026-5174045 | None:intergenic | 45.0% | |
| GCTCAGCACTCTTAGCTAAA+CGG | + | chr2_4:5174417-5174436 | None:intergenic | 45.0% | |
| GCAAATGGTTGCATTGGAGA+TGG | - | chr2_4:5174457-5174476 | Msa0310380:intron | 45.0% | |
| TGAAGCATGCAGAGACACAA+TGG | - | chr2_4:5174483-5174502 | Msa0310380:intron | 45.0% | |
| TGTCTCGATAACAAGGTAGC+TGG | - | chr2_4:5174553-5174572 | Msa0310380:intron | 45.0% | |
| !! | CTCTGAAGCCACTTTACAAC+AGG | + | chr2_4:5174579-5174598 | None:intergenic | 45.0% |
| ACCGCTGCATTGGATTTGAA+AGG | + | chr2_4:5174901-5174920 | None:intergenic | 45.0% | |
| ! | TTGGTCCTAGCCTCATTTTC+TGG | - | chr2_4:5174969-5174988 | Msa0310380:intron | 45.0% |
| CATGAATCAGCAAGCAATCC+AGG | - | chr2_4:5175007-5175026 | Msa0310380:intron | 45.0% | |
| ATCAGCAAGCAATCCAGGAA+AGG | - | chr2_4:5175012-5175031 | Msa0310380:intron | 45.0% | |
| ! | AACTGATTCTCAGCCTTTCC+TGG | + | chr2_4:5175028-5175047 | None:intergenic | 45.0% |
| GGCTGAGAATCAGTTCTTTC+AGG | - | chr2_4:5175033-5175052 | Msa0310380:intron | 45.0% | |
| ACAGCATGATGTGCCAAAGT+TGG | + | chr2_4:5175120-5175139 | None:intergenic | 45.0% | |
| GGCGGTGAATTCTTGTGGTT+AGG | + | chr2_4:5169579-5169598 | None:intergenic | 50.0% | |
| TAACCGGCGGTGAATTCTTG+TGG | + | chr2_4:5169584-5169603 | None:intergenic | 50.0% | |
| CATTGAGCAGTGTGTTGAGC+TGG | - | chr2_4:5170763-5170782 | Msa0310380:intron | 50.0% | |
| AGCAGGCTGTTGTTCAATCC+AGG | - | chr2_4:5170984-5171003 | Msa0310380:CDS | 50.0% | |
| CAATCCAGGTTCAACGTGCT+AGG | - | chr2_4:5170998-5171017 | Msa0310380:CDS | 50.0% | |
| AATCCCTAGCACGTTGAACC+TGG | + | chr2_4:5171005-5171024 | None:intergenic | 50.0% | |
| ACGTGCTAGGGATTCAGAAG+TGG | - | chr2_4:5171011-5171030 | Msa0310380:CDS | 50.0% | |
| CTAGGGATTCAGAAGTGGCT+TGG | - | chr2_4:5171016-5171035 | Msa0310380:CDS | 50.0% | |
| TTTCTCAAGGGCAGTGTGTC+TGG | + | chr2_4:5171057-5171076 | None:intergenic | 50.0% | |
| CAGCTACACCCACCACTAAT+CGG | + | chr2_4:5171087-5171106 | None:intergenic | 50.0% | |
| ACCAAACCACTAAGTGGGGT+CGG | + | chr2_4:5171490-5171509 | None:intergenic | 50.0% | |
| GGCTACTAGAATGGGGAACT+TGG | + | chr2_4:5171759-5171778 | None:intergenic | 50.0% | |
| TTCATGGTCTGACACACCTG+AGG | - | chr2_4:5171942-5171961 | Msa0310380:intron | 50.0% | |
| TCATGGTCTGACACACCTGA+GGG | - | chr2_4:5171943-5171962 | Msa0310380:intron | 50.0% | |
| ! | CTTTGAAGGCAAGTGTGTGG+TGG | - | chr2_4:5172104-5172123 | Msa0310380:five_prime_UTR | 50.0% |
| CGCTTTCCTGCTGATGACTT+TGG | + | chr2_4:5173446-5173465 | None:intergenic | 50.0% | |
| GCAGACATAAATCAGCGGTG+TGG | - | chr2_4:5173512-5173531 | Msa0310380:intron | 50.0% | |
| CAGTCAAGGTTCTTCTCAGC+AGG | - | chr2_4:5173895-5173914 | Msa0310380:intron | 50.0% | |
| CTCACCCATAAGCTCTTCTC+TGG | - | chr2_4:5174018-5174037 | Msa0310380:intron | 50.0% | |
| ! | TAGCTTTTGCCACCTGCAAC+AGG | - | chr2_4:5174063-5174082 | Msa0310380:intron | 50.0% |
| ATGCAGAGACACAATGGCTC+AGG | - | chr2_4:5174489-5174508 | Msa0310380:intron | 50.0% | |
| CAATGGCTCAGGATACAAGC+AGG | - | chr2_4:5174500-5174519 | Msa0310380:intron | 50.0% | |
| ! | GTAGCTGGCCTGTTGTAAAG+TGG | - | chr2_4:5174568-5174587 | Msa0310380:intron | 50.0% |
| ! | CCTGCTGCACAAGATTTTGG+TGG | + | chr2_4:5175365-5175384 | None:intergenic | 50.0% |
| CCACCAAAATCTTGTGCAGC+AGG | - | chr2_4:5175362-5175381 | Msa0310380:intron | 50.0% | |
| ! | CCACCTGCTGCACAAGATTT+TGG | + | chr2_4:5175368-5175387 | None:intergenic | 50.0% |
| CCAAAATCTTGTGCAGCAGG+TGG | - | chr2_4:5175365-5175384 | Msa0310380:intron | 50.0% | |
| TGAGCAGTGTGTTGAGCTGG+AGG | - | chr2_4:5170766-5170785 | Msa0310380:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2_4:5171482-5171501 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2_4:5171481-5171500 | Msa0310380:intron | 55.0% | |
| TTGCCACCTGCAACAGGTGT+TGG | - | chr2_4:5174069-5174088 | Msa0310380:intron | 55.0% | |
| GTTCCAACACCTGTTGCAGG+TGG | + | chr2_4:5174075-5174094 | None:intergenic | 55.0% | |
| CCTGTTCCAACACCTGTTGC+AGG | + | chr2_4:5174078-5174097 | None:intergenic | 55.0% | |
| !! | CCTGCAACAGGTGTTGGAAC+AGG | - | chr2_4:5174075-5174094 | Msa0310380:intron | 55.0% |
| GCCGACCCCACTTAGTGGTT+TGG | - | chr2_4:5171486-5171505 | Msa0310380:intron | 60.0% | |
| CGGTGTGGAGCCTCTTCTAG+TGG | - | chr2_4:5173527-5173546 | Msa0310380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5167661 | 5175475 | 5167661 | ID=Msa0310380;Name=Msa0310380 |
| chr2_4 | mRNA | 5167661 | 5175475 | 5167661 | ID=Msa0310380-mRNA-1;Parent=Msa0310380;Name=Msa0310380-mRNA-1;_AED=0.16;_eAED=0.16;_QI=349|1|1|1|0.62|0.66|9|370|645 |
| chr2_4 | exon | 5167661 | 5168132 | 5167661 | ID=Msa0310380-mRNA-1:exon:1797;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5168218 | 5168353 | 5168218 | ID=Msa0310380-mRNA-1:exon:1796;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5168615 | 5168763 | 5168615 | ID=Msa0310380-mRNA-1:exon:1795;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5169040 | 5169699 | 5169040 | ID=Msa0310380-mRNA-1:exon:1794;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5170424 | 5170775 | 5170424 | ID=Msa0310380-mRNA-1:exon:1793;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5170889 | 5171424 | 5170889 | ID=Msa0310380-mRNA-1:exon:1792;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5171983 | 5172130 | 5171983 | ID=Msa0310380-mRNA-1:exon:1791;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5173104 | 5173200 | 5173104 | ID=Msa0310380-mRNA-1:exon:1790;Parent=Msa0310380-mRNA-1 |
| chr2_4 | exon | 5175369 | 5175475 | 5175369 | ID=Msa0310380-mRNA-1:exon:1789;Parent=Msa0310380-mRNA-1 |
| chr2_4 | five_prime_UTR | 5175369 | 5175475 | 5175369 | ID=Msa0310380-mRNA-1:five_prime_utr;Parent=Msa0310380-mRNA-1 |
| chr2_4 | five_prime_UTR | 5173104 | 5173200 | 5173104 | ID=Msa0310380-mRNA-1:five_prime_utr;Parent=Msa0310380-mRNA-1 |
| chr2_4 | five_prime_UTR | 5171986 | 5172130 | 5171986 | ID=Msa0310380-mRNA-1:five_prime_utr;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5171983 | 5171985 | 5171983 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5170889 | 5171424 | 5170889 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5170424 | 5170775 | 5170424 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5169040 | 5169699 | 5169040 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5168615 | 5168763 | 5168615 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5168218 | 5168353 | 5168218 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | CDS | 5168031 | 5168132 | 5168031 | ID=Msa0310380-mRNA-1:cds;Parent=Msa0310380-mRNA-1 |
| chr2_4 | three_prime_UTR | 5167661 | 5168030 | 5167661 | ID=Msa0310380-mRNA-1:three_prime_utr;Parent=Msa0310380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
