Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372340 | XP_003593191.1 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372340 | sp|A8MQN2|LNK1_ARATH | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.65e-30 | 130 |
| Msa1372340 | sp|A8MQN2|LNK1_ARATH | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.05e-16 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372340 | G7INV3 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012260 | Msa1372340 | 0.823749 | 1.171344e-53 | -8.615850e-47 |
| Msa0060970 | Msa1372340 | 0.813186 | 2.907466e-51 | -8.615850e-47 |
| Msa0074310 | Msa1372340 | 0.846742 | 1.794396e-59 | -8.615850e-47 |
| Msa0083200 | Msa1372340 | 0.838002 | 3.723534e-57 | -8.615850e-47 |
| Msa1372340 | Msa1400330 | 0.801187 | 1.013708e-48 | -8.615850e-47 |
| Msa1372340 | Msa1415820 | 0.821604 | 3.695923e-53 | -8.615850e-47 |
| Msa0751000 | Msa1372340 | 0.813511 | 2.467172e-51 | -8.615850e-47 |
| Msa0794040 | Msa1372340 | 0.841562 | 4.408294e-58 | -8.615850e-47 |
| Msa0175480 | Msa1372340 | 0.802507 | 5.429177e-49 | -8.615850e-47 |
| Msa0187720 | Msa1372340 | 0.854422 | 1.244148e-61 | -8.615850e-47 |
| Msa0216010 | Msa1372340 | 0.814934 | 1.196460e-51 | -8.615850e-47 |
| Msa0232290 | Msa1372340 | 0.942047 | 1.432055e-101 | -8.615850e-47 |
| Msa1294520 | Msa1372340 | 0.836666 | 8.187204e-57 | -8.615850e-47 |
| Msa0369750 | Msa1372340 | 0.812017 | 5.237356e-51 | -8.615850e-47 |
| Msa0426680 | Msa1372340 | 0.814645 | 1.386409e-51 | -8.615850e-47 |
| Msa0463960 | Msa1372340 | 0.805376 | 1.375398e-49 | -8.615850e-47 |
| Msa1025610 | Msa1372340 | 0.822335 | 2.503304e-53 | -8.615850e-47 |
| Msa1084630 | Msa1372340 | 0.802367 | 5.803305e-49 | -8.615850e-47 |
| Msa0256170 | Msa1372340 | 0.817677 | 2.912575e-52 | -8.615850e-47 |
| Msa0271740 | Msa1372340 | 0.997581 | 3.836457e-245 | -8.615850e-47 |
| Msa0310380 | Msa1372340 | 0.996708 | 4.084050e-231 | -8.615850e-47 |
| Msa1132320 | Msa1372340 | 0.839185 | 1.842909e-57 | -8.615850e-47 |
| Msa1201610 | Msa1372340 | 0.814160 | 1.774987e-51 | -8.615850e-47 |
| Msa0509510 | Msa1372340 | 0.824005 | 1.020433e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372340 | MtrunA17_Chr2g0279081 | 93.488 | 645 | 42 | 0 | 1 | 645 | 1 | 645 | 0.0 | 1246 |
| Msa1372340 | MtrunA17_Chr4g0050491 | 55.366 | 587 | 247 | 9 | 67 | 639 | 1 | 586 | 0.0 | 562 |
| Msa1372340 | MtrunA17_Chr3g0083841 | 25.185 | 540 | 304 | 22 | 116 | 595 | 68 | 567 | 1.59e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372340 | AT5G64170.1 | 36.531 | 271 | 139 | 8 | 361 | 620 | 293 | 541 | 1.08e-31 | 130 |
| Msa1372340 | AT5G64170.1 | 35.220 | 159 | 79 | 6 | 77 | 218 | 23 | 174 | 4.34e-15 | 79.0 |
| Msa1372340 | AT5G64170.3 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.68e-31 | 130 |
| Msa1372340 | AT5G64170.3 | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.16e-17 | 84.7 |
| Msa1372340 | AT5G64170.2 | 36.531 | 271 | 139 | 8 | 361 | 620 | 343 | 591 | 1.68e-31 | 130 |
| Msa1372340 | AT5G64170.2 | 33.628 | 226 | 117 | 8 | 9 | 218 | 16 | 224 | 7.16e-17 | 84.7 |
| Msa1372340 | AT3G54500.6 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 2.76e-16 | 82.8 |
| Msa1372340 | AT3G54500.8 | 40.945 | 127 | 59 | 3 | 483 | 595 | 365 | 489 | 2.76e-16 | 82.8 |
| Msa1372340 | AT3G54500.2 | 40.945 | 127 | 59 | 3 | 483 | 595 | 249 | 373 | 2.95e-16 | 82.4 |
| Msa1372340 | AT3G54500.7 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.29e-16 | 82.8 |
| Msa1372340 | AT3G54500.5 | 40.945 | 127 | 59 | 3 | 483 | 595 | 445 | 569 | 3.29e-16 | 82.8 |
| Msa1372340 | AT3G54500.1 | 40.945 | 127 | 59 | 3 | 483 | 595 | 444 | 568 | 3.61e-16 | 82.8 |
| Msa1372340 | AT3G54500.3 | 40.945 | 127 | 59 | 3 | 483 | 595 | 476 | 600 | 4.83e-16 | 82.4 |
| Msa1372340 | AT3G54500.4 | 40.945 | 127 | 59 | 3 | 483 | 595 | 459 | 583 | 5.42e-16 | 82.0 |
Find 155 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGGTATTCTTTCATTT+TGG | 0.096568 | tig0019276:-93872 | None:intergenic |
| TCTTGAGATATGTCATTTAT+TGG | 0.138127 | tig0019276:-94107 | None:intergenic |
| CCACCTGCTGCACAAGATTT+TGG | 0.185924 | tig0019276:-97322 | None:intergenic |
| GGCTGAGAATCAGTTCTTTC+AGG | 0.211228 | tig0019276:+96990 | Msa1372340:CDS |
| CTATGTTCTGCTTATGCTTC+TGG | 0.212108 | tig0019276:-95528 | None:intergenic |
| TTAGAGCATGACTAAATTCT+AGG | 0.239335 | tig0019276:-95597 | None:intergenic |
| TTTGAGCAAGAAGTGATTAT+TGG | 0.248089 | tig0019276:-89879 | None:intergenic |
| AGAAGCTGTGATTTAACTTT+TGG | 0.261648 | tig0019276:+94316 | Msa1372340:intron |
| AAGATGATGTATAATTATTT+CGG | 0.276339 | tig0019276:+97125 | Msa1372340:three_prime_UTR |
| AACATAGATTCTAATTCTTT+AGG | 0.286126 | tig0019276:+95544 | Msa1372340:CDS |
| TAGTTCTCATGGTCATTCTT+TGG | 0.291046 | tig0019276:+95720 | Msa1372340:CDS |
| AACTGATTCTCAGCCTTTCC+TGG | 0.302412 | tig0019276:-96982 | None:intergenic |
| TTTCTCAAGGGCAGTGTGTC+TGG | 0.311983 | tig0019276:-93011 | None:intergenic |
| ACTGTCCCTTATGCACAATT+TGG | 0.312260 | tig0019276:-96343 | None:intergenic |
| AGAACTCAATCCTTGTTAAA+TGG | 0.314785 | tig0019276:+93089 | Msa1372340:exon |
| TCACTCTCTTCGACTTTCTC+TGG | 0.316838 | tig0019276:+95628 | Msa1372340:CDS |
| AATGAAAGAATACCAGAAAA+AGG | 0.326428 | tig0019276:+93876 | Msa1372340:CDS |
| TTCTTGCTCAAATCACGTTT+TGG | 0.331757 | tig0019276:+89890 | Msa1372340:five_prime_UTR |
| TATTGCTCAGGAGGAGTATA+AGG | 0.347713 | tig0019276:-95445 | None:intergenic |
| TATTTGCTTCAAGTGAGTTT+TGG | 0.354113 | tig0019276:-95999 | None:intergenic |
| TTGAAGGAAGAAGAGTCTTC+TGG | 0.357979 | tig0019276:+89812 | Msa1372340:five_prime_UTR |
| TCTAGTGGTGTTACTTCTCT+TGG | 0.358437 | tig0019276:+95499 | Msa1372340:CDS |
| CGCTTTCCTGCTGATGACTT+TGG | 0.359406 | tig0019276:-95400 | None:intergenic |
| AAACATATCAGAATACAATA+TGG | 0.374130 | tig0019276:+94462 | Msa1372340:CDS |
| TTACATTTGTGCTGATCATA+AGG | 0.375300 | tig0019276:+97243 | Msa1372340:three_prime_UTR |
| CATGGCATTCAATGCAAAAC+TGG | 0.375466 | tig0019276:-97174 | None:intergenic |
| TTGAAAGGTGCAATATCGTT+TGG | 0.378904 | tig0019276:-96840 | None:intergenic |
| TTAAAACCAAATTGTGCATA+AGG | 0.389416 | tig0019276:+96337 | Msa1372340:CDS |
| CTAAATTCTAGGTGCGTTGA+AGG | 0.397226 | tig0019276:-95586 | None:intergenic |
| CCTGTTCCAACACCTGTTGC+AGG | 0.401689 | tig0019276:-96032 | None:intergenic |
| ATTGTGTTGGCTACTAGAAT+GGG | 0.405191 | tig0019276:-93721 | None:intergenic |
| GGCTACTAGAATGGGGAACT+TGG | 0.405900 | tig0019276:-93713 | None:intergenic |
| CAATAATCAGTTTGTAATAG+AGG | 0.412345 | tig0019276:+93740 | Msa1372340:CDS |
| TTGGTCCAGAGAAGAGCTTA+TGG | 0.412463 | tig0019276:-95980 | None:intergenic |
| TGTTACAGTTTGAAGATAAC+GGG | 0.418573 | tig0019276:+93661 | Msa1372340:intron |
| TGGTCCAGAGAAGAGCTTAT+GGG | 0.423154 | tig0019276:-95979 | None:intergenic |
| GTGTTACAGTTTGAAGATAA+CGG | 0.424661 | tig0019276:+93660 | Msa1372340:intron |
| TTCTCATGGTCATTCTTTGG+TGG | 0.425898 | tig0019276:+95723 | Msa1372340:CDS |
| ATAATTATTTCGGATTTACT+TGG | 0.425906 | tig0019276:+97135 | Msa1372340:three_prime_UTR |
| TTACAAACTGATTATTGTGT+TGG | 0.431587 | tig0019276:-93734 | None:intergenic |
| GCAGATGATACCATCTTTGA+AGG | 0.435329 | tig0019276:+94047 | Msa1372340:CDS |
| TCGTTTGGAAGCAAAGTTGA+TGG | 0.437120 | tig0019276:-96825 | None:intergenic |
| CTCACCCATAAGCTCTTCTC+TGG | 0.441799 | tig0019276:+95975 | Msa1372340:CDS |
| AATGATGGATGGCTGGATAT+AGG | 0.446315 | tig0019276:+94155 | Msa1372340:CDS |
| AGTGGTAATGTTAGTAGCTA+TGG | 0.448221 | tig0019276:+93810 | Msa1372340:CDS |
| TAAGAAGATAAGATCTCAAA+TGG | 0.449643 | tig0019276:+94552 | Msa1372340:CDS |
| AAATTGTTCGTGCAAGTTGA+AGG | 0.450414 | tig0019276:+89796 | None:intergenic |
| AGAAACATATTGCCGATTAG+TGG | 0.450818 | tig0019276:+93029 | Msa1372340:five_prime_UTR |
| TTCTTCTTCACATGGTGCTG+AGG | 0.451712 | tig0019276:+94378 | Msa1372340:CDS |
| TCTTCTTCACATGGTGCTGA+GGG | 0.452219 | tig0019276:+94379 | Msa1372340:CDS |
| TGTGCTATAGACCGATCAAT+AGG | 0.452786 | tig0019276:-96777 | None:intergenic |
| CGCCTTGAATGTATCATTAG+TGG | 0.453007 | tig0019276:+91922 | Msa1372340:five_prime_UTR |
| TACATTTGTGCTGATCATAA+GGG | 0.455222 | tig0019276:+97244 | Msa1372340:three_prime_UTR |
| AAGAGCAGCAATATAGATTC+TGG | 0.457245 | tig0019276:+94008 | Msa1372340:CDS |
| GTCAAACATCTGTATGTTTG+AGG | 0.458710 | tig0019276:+91968 | Msa1372340:five_prime_UTR |
| CAGTCAAGGTTCTTCTCAGC+AGG | 0.459504 | tig0019276:+95852 | Msa1372340:CDS |
| CATGAATCAGCAAGCAATCC+AGG | 0.459923 | tig0019276:+96964 | Msa1372340:CDS |
| TATTGTGTTGGCTACTAGAA+TGG | 0.460505 | tig0019276:-93722 | None:intergenic |
| CAGCTACACCCACCACTAAT+CGG | 0.461204 | tig0019276:-93041 | None:intergenic |
| TTGCCACCTGCAACAGGTGT+TGG | 0.465856 | tig0019276:+96026 | Msa1372340:CDS |
| AGTGAATCAGACACAAAATC+TGG | 0.466240 | tig0019276:+94616 | Msa1372340:CDS |
| GCTCAGCACTCTTAGCTAAA+CGG | 0.468585 | tig0019276:-96371 | None:intergenic |
| ATTGGATTTCTACCGGTCAA+TGG | 0.471022 | tig0019276:+94502 | Msa1372340:CDS |
| CCTGCAACAGGTGTTGGAAC+AGG | 0.472185 | tig0019276:+96032 | Msa1372340:CDS |
| ATCTGGTCATAAAGATGTCT+TGG | 0.473531 | tig0019276:+94633 | Msa1372340:CDS |
| CACCACTAATGATACATTCA+AGG | 0.478639 | tig0019276:-91924 | None:intergenic |
| CCACCAAAATCTTGTGCAGC+AGG | 0.482241 | tig0019276:+97319 | Msa1372340:three_prime_UTR |
| TAAAACCAAATTGTGCATAA+GGG | 0.485364 | tig0019276:+96338 | Msa1372340:CDS |
| TAGCACACTTATTGTTTCAC+AGG | 0.486283 | tig0019276:+96793 | Msa1372340:CDS |
| TTTATGTCTGCATATTGCTC+AGG | 0.486638 | tig0019276:-95457 | None:intergenic |
| CTGAACATTGATAATGAAGC+AGG | 0.487371 | tig0019276:-94595 | None:intergenic |
| ATGAAAACATACCGCTGCAT+TGG | 0.490304 | tig0019276:-96865 | None:intergenic |
| TCCTACTTAAGAGGTGATCA+TGG | 0.490865 | tig0019276:-95789 | None:intergenic |
| CACACACTTGCCTTCAAAGA+TGG | 0.493193 | tig0019276:-94057 | None:intergenic |
| ACAAACGCAAATGGTTGCAT+TGG | 0.499312 | tig0019276:+96408 | Msa1372340:CDS |
| CAATCCAGGTTCAACGTGCT+AGG | 0.506235 | tig0019276:+92955 | Msa1372340:intron |
| TCTTGATAATGATGGATGGC+TGG | 0.506703 | tig0019276:+94148 | Msa1372340:CDS |
| TAAGACAAATCTATAAATGA+AGG | 0.506723 | tig0019276:-95682 | None:intergenic |
| ATAGCTTCATTCAGGTGTAC+AGG | 0.507893 | tig0019276:+96726 | Msa1372340:intron |
| GACTCATACAGAGAAGCAAA+AGG | 0.517130 | tig0019276:+93945 | Msa1372340:CDS |
| ATGAGAACTATCCATGTTTG+AGG | 0.517385 | tig0019276:-95707 | None:intergenic |
| GGGCAAACTTCAGATAATAC+AGG | 0.518134 | tig0019276:+93966 | Msa1372340:CDS |
| CTATGGAACTCTCGGTAAAG+AGG | 0.523194 | tig0019276:+93827 | Msa1372340:CDS |
| CATATTATAACAAACGCAAA+TGG | 0.523301 | tig0019276:+96399 | Msa1372340:CDS |
| GATCTTATCTTCTTATCACC+AGG | 0.526393 | tig0019276:-94544 | None:intergenic |
| GATAAGATCTCAAATGGATG+TGG | 0.526394 | tig0019276:+94558 | Msa1372340:CDS |
| AGAAGTAACACCACTAGAAG+AGG | 0.527293 | tig0019276:-95494 | None:intergenic |
| AGAAAACATTGGATTTCTAC+CGG | 0.528050 | tig0019276:+94495 | Msa1372340:CDS |
| AAAGTTCGAGGGGTTAGTCT+AGG | 0.529625 | tig0019276:+95913 | Msa1372340:CDS |
| AACATATTGCCGATTAGTGG+TGG | 0.529724 | tig0019276:+93032 | Msa1372340:five_prime_UTR |
| TGTCTTGGTGCCGAAAGAAA+AGG | 0.530302 | tig0019276:+94648 | Msa1372340:CDS |
| GATTCCTCAAAAGAAAACAT+TGG | 0.531152 | tig0019276:+94484 | Msa1372340:CDS |
| GTTAGTAGCTATGGAACTCT+CGG | 0.540751 | tig0019276:+93819 | Msa1372340:CDS |
| AAGCTTCCAAAGTCATCAGC+AGG | 0.541829 | tig0019276:+95394 | Msa1372340:CDS |
| AATCCAGGTTCAACGTGCTA+GGG | 0.543278 | tig0019276:+92956 | Msa1372340:intron |
| CCGATCAATAGGATTTGTGT+TGG | 0.547237 | tig0019276:-96766 | None:intergenic |
| ACAGCATGATGTGCCAAAGT+TGG | 0.548678 | tig0019276:-97074 | None:intergenic |
| AGTGAAAGTGAAACCAACTT+TGG | 0.550845 | tig0019276:+97061 | Msa1372340:exon |
| CAATTTGAAAATGAAAATGA+AGG | 0.554036 | tig0019276:+95883 | Msa1372340:CDS |
| ATAATGAAGAGGAGTTCTGC+TGG | 0.555764 | tig0019276:+94353 | Msa1372340:CDS |
| ATGCAGAGACACAATGGCTC+AGG | 0.555984 | tig0019276:+96446 | Msa1372340:CDS |
| AATCGGCAATATGTTTCTCA+AGG | 0.556026 | tig0019276:-93024 | None:intergenic |
| TGCATAATGAAGCTCTATGT+CGG | 0.556095 | tig0019276:-94422 | None:intergenic |
| GAAACTTAGACGATGTTGAC+AGG | 0.556327 | tig0019276:+94177 | Msa1372340:CDS |
| CTAGGGATTCAGAAGTGGCT+TGG | 0.558931 | tig0019276:+92973 | Msa1372340:five_prime_UTR |
| TCAAACATGGATAGTTCTCA+TGG | 0.564829 | tig0019276:+95709 | Msa1372340:CDS |
| ATGCTTAATAAACATGACAT+TGG | 0.568380 | tig0019276:+91895 | Msa1372340:five_prime_UTR |
| GAAGGTCATAGTAAAGTTCG+AGG | 0.569058 | tig0019276:+95901 | Msa1372340:CDS |
| CAGATGTTTGACATTCATCT+CGG | 0.573495 | tig0019276:-91957 | None:intergenic |
| CGGTGTGGAGCCTCTTCTAG+TGG | 0.574208 | tig0019276:+95484 | Msa1372340:CDS |
| TTTGTCTTATGCCTCAAACA+TGG | 0.576290 | tig0019276:+95696 | Msa1372340:CDS |
| AGCAAAGTTGATGGATCTGT+CGG | 0.576326 | tig0019276:-96816 | None:intergenic |
| ACCGCTGCATTGGATTTGAA+AGG | 0.582968 | tig0019276:-96855 | None:intergenic |
| ATGTCTGCATATTGCTCAGG+AGG | 0.584113 | tig0019276:-95454 | None:intergenic |
| GAAATGCTATTTCACAGTCA+AGG | 0.584593 | tig0019276:+95838 | Msa1372340:CDS |
| CATGACGAAAATACACCCTC+AGG | 0.584702 | tig0019276:-93915 | None:intergenic |
| AATAATCAGTTTGTAATAGA+GGG | 0.586046 | tig0019276:+93741 | Msa1372340:CDS |
| CCAACACAAATCCTATTGAT+CGG | 0.586181 | tig0019276:+96766 | Msa1372340:CDS |
| GCCATGATCACCTCTTAAGT+AGG | 0.587338 | tig0019276:+95788 | Msa1372340:CDS |
| AAGTTGGTTTCACTTTCACT+AGG | 0.587813 | tig0019276:-97058 | None:intergenic |
| ACTCATACAGAGAAGCAAAA+GGG | 0.591280 | tig0019276:+93946 | Msa1372340:CDS |
| CAGTTTGAAGATAACGGGTG+GGG | 0.592142 | tig0019276:+93666 | Msa1372340:intron |
| TTATACATCATCTTATACGA+TGG | 0.595888 | tig0019276:-97116 | None:intergenic |
| TTCAAGTTTACCATTTAACA+AGG | 0.596574 | tig0019276:-93099 | None:intergenic |
| ATCTTATCTTCTTATCACCA+GGG | 0.596740 | tig0019276:-94543 | None:intergenic |
| ATCAGCAAGCAATCCAGGAA+AGG | 0.601092 | tig0019276:+96969 | Msa1372340:CDS |
| GCAAATGGTTGCATTGGAGA+TGG | 0.602010 | tig0019276:+96414 | Msa1372340:CDS |
| ACAGTTTGAAGATAACGGGT+GGG | 0.607123 | tig0019276:+93665 | Msa1372340:intron |
| ACGTGCTAGGGATTCAGAAG+TGG | 0.607512 | tig0019276:+92968 | Msa1372340:five_prime_UTR |
| GGAGAGTCTCAATAATGAAG+AGG | 0.607581 | tig0019276:+94342 | Msa1372340:CDS |
| GGATTAAGAGCTGAACATGA+CGG | 0.610788 | tig0019276:+95649 | Msa1372340:CDS |
| CAGTTTGTAATAGAGGGTGA+TGG | 0.614082 | tig0019276:+93747 | Msa1372340:CDS |
| ACCTTTCAAATCCAATGCAG+CGG | 0.619682 | tig0019276:+96854 | Msa1372340:CDS |
| ACAAATGTACATCAGTGTCA+TGG | 0.620943 | tig0019276:-97192 | None:intergenic |
| TCTTATCTTCTTATCACCAG+GGG | 0.621499 | tig0019276:-94542 | None:intergenic |
| TACAGTTTGAAGATAACGGG+TGG | 0.624726 | tig0019276:+93664 | Msa1372340:intron |
| ATTGATGCTATAAAGAGTAG+TGG | 0.626262 | tig0019276:+93792 | Msa1372340:CDS |
| TTCATGGTCTGACACACCTG+AGG | 0.629053 | tig0019276:+93899 | Msa1372340:CDS |
| CTTGAATGTATCATTAGTGG+TGG | 0.631648 | tig0019276:+91925 | Msa1372340:five_prime_UTR |
| CAATGGCTCAGGATACAAGC+AGG | 0.636267 | tig0019276:+96457 | Msa1372340:CDS |
| CTTTGAAGGCAAGTGTGTGG+TGG | 0.637680 | tig0019276:+94061 | Msa1372340:CDS |
| ATCGGCAATATGTTTCTCAA+GGG | 0.639267 | tig0019276:-93023 | None:intergenic |
| AAGGTCATAGTAAAGTTCGA+GGG | 0.639450 | tig0019276:+95902 | Msa1372340:CDS |
| TCATGGTCTGACACACCTGA+GGG | 0.642015 | tig0019276:+93900 | Msa1372340:CDS |
| TGAAGCATGCAGAGACACAA+TGG | 0.643751 | tig0019276:+96440 | Msa1372340:CDS |
| ACATATTGCCGATTAGTGGT+GGG | 0.646128 | tig0019276:+93033 | Msa1372340:five_prime_UTR |
| TTGTGTTGGCTACTAGAATG+GGG | 0.655577 | tig0019276:-93720 | None:intergenic |
| CCAAAATCTTGTGCAGCAGG+TGG | 0.655848 | tig0019276:+97322 | Msa1372340:three_prime_UTR |
| TGAACATTGATAATGAAGCA+GGG | 0.667170 | tig0019276:-94594 | None:intergenic |
| GTTCCAACACCTGTTGCAGG+TGG | 0.671411 | tig0019276:-96029 | None:intergenic |
| AGCAGCAATATAGATTCTGG+TGG | 0.680935 | tig0019276:+94011 | Msa1372340:CDS |
| AGGTCATAGTAAAGTTCGAG+GGG | 0.696049 | tig0019276:+95903 | Msa1372340:CDS |
| GCAGACATAAATCAGCGGTG+TGG | 0.709486 | tig0019276:+95469 | Msa1372340:CDS |
| CATCTTTGAAGGCAAGTGTG+TGG | 0.715901 | tig0019276:+94058 | Msa1372340:CDS |
| AATATGCAGACATAAATCAG+CGG | 0.754231 | tig0019276:+95464 | Msa1372340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGAAAGATAAATAT+TGG | + | tig0019276:90831-90850 | Msa1372340:intron | 10.0% |
| !! | ATTATCAAATGTTATATTTA+TGG | - | tig0019276:91175-91194 | None:intergenic | 10.0% |
| !!! | AACATTTTAACTTTATAAGT+TGG | + | tig0019276:90497-90516 | Msa1372340:intron | 15.0% |
| !! | TTGATTTACAAAGAAAAAAT+AGG | - | tig0019276:90679-90698 | None:intergenic | 15.0% |
| !!! | AATTGTCAGAATTTAAAATA+GGG | - | tig0019276:90908-90927 | None:intergenic | 15.0% |
| !!! | AAATTGTCAGAATTTAAAAT+AGG | - | tig0019276:90909-90928 | None:intergenic | 15.0% |
| !!! | GTATTTTTGAACTAAAAATT+GGG | + | tig0019276:90940-90959 | Msa1372340:intron | 15.0% |
| !!! | TATTTTTGAACTAAAAATTG+GGG | + | tig0019276:90941-90960 | Msa1372340:intron | 15.0% |
| !!! | ATTTTAAAATTTGACAGTTT+TGG | - | tig0019276:91098-91117 | None:intergenic | 15.0% |
| !!! | AACTGTCAAATTTTAAAATA+AGG | + | tig0019276:91099-91118 | Msa1372340:intron | 15.0% |
| !!! | ACTGTCAAATTTTAAAATAA+GGG | + | tig0019276:91100-91119 | Msa1372340:intron | 15.0% |
| !!! | TACAAAAATAATTTGTCAAA+GGG | - | tig0019276:91425-91444 | None:intergenic | 15.0% |
| !! | TAATATTGTATTTCAAATAC+TGG | - | tig0019276:92018-92037 | None:intergenic | 15.0% |
| !!! | TATATATTAGTATCTGATTT+TGG | + | tig0019276:92862-92881 | Msa1372340:intron | 15.0% |
| !!! | TTATTTATTTTGTTATACGA+GGG | - | tig0019276:93329-93348 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTGTTATACG+AGG | - | tig0019276:93330-93349 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTTTCTCTTTAT+TGG | + | tig0019276:93558-93577 | Msa1372340:intron | 15.0% |
| !!! | TTTCTATTTTTCTCTTTATT+GGG | + | tig0019276:93559-93578 | Msa1372340:intron | 15.0% |
| !!! | TTTCTAAAATATAAACATCT+TGG | - | tig0019276:94904-94923 | None:intergenic | 15.0% |
| !!! | GAATAACAAAAGAATTTTTT+TGG | - | tig0019276:96629-96648 | None:intergenic | 15.0% |
| !! | AAGATGATGTATAATTATTT+CGG | + | tig0019276:97125-97144 | Msa1372340:three_prime_UTR | 15.0% |
| !! | GTAAATCTCATAGATATAAA+TGG | - | tig0019276:90040-90059 | None:intergenic | 20.0% |
| !!! | AAAATGAACTTCCAATATTT+TGG | + | tig0019276:90241-90260 | Msa1372340:intron | 20.0% |
| !! | ATATTGAAGATCCAAAATAT+TGG | - | tig0019276:90255-90274 | None:intergenic | 20.0% |
| !! | TTTAGAAAATAAAATGAGCA+AGG | - | tig0019276:90288-90307 | None:intergenic | 20.0% |
| !! | TACTGATATAAACATTTATG+AGG | + | tig0019276:90368-90387 | Msa1372340:intron | 20.0% |
| !! | TACAAAGAAAAAATAGGTAT+TGG | - | tig0019276:90673-90692 | None:intergenic | 20.0% |
| !!! | TTTTTTCGCCATTTTTATTA+TGG | + | tig0019276:90791-90810 | Msa1372340:intron | 20.0% |
| !! | TCTATAAAAACATGAAACAA+GGG | - | tig0019276:90820-90839 | None:intergenic | 20.0% |
| !! | TTCTATAAAAACATGAAACA+AGG | - | tig0019276:90821-90840 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTCAAAAATACG+TGG | - | tig0019276:90939-90958 | None:intergenic | 20.0% |
| !!! | CGTATTTTTGAACTAAAAAT+TGG | + | tig0019276:90939-90958 | Msa1372340:intron | 20.0% |
| !!! | GTACAAAAATAATTTGTCAA+AGG | - | tig0019276:91426-91445 | None:intergenic | 20.0% |
| !!! | TCAAAGATATTTTTCAATCA+TGG | - | tig0019276:91867-91886 | None:intergenic | 20.0% |
| !! | TGAAATACAATATTACTTTG+CGG | + | tig0019276:92023-92042 | Msa1372340:intron | 20.0% |
| !! | TCACTTCTCAATTATAATAA+TGG | + | tig0019276:92423-92442 | Msa1372340:intron | 20.0% |
| !! | TTATAATAATGGTTCAGTTT+AGG | + | tig0019276:92434-92453 | Msa1372340:intron | 20.0% |
| !! | AAAAAACACTTATTTATGCT+GGG | - | tig0019276:92474-92493 | None:intergenic | 20.0% |
| !! | AAAAAAACACTTATTTATGC+TGG | - | tig0019276:92475-92494 | None:intergenic | 20.0% |
| !! | TCATATGGTAAATAGTAAAA+AGG | - | tig0019276:93392-93411 | None:intergenic | 20.0% |
| !! | AATAATCAGTTTGTAATAGA+GGG | + | tig0019276:93741-93760 | Msa1372340:CDS | 20.0% |
| !!! | TATTCTGATATGTTTTTCAA+TGG | - | tig0019276:94457-94476 | None:intergenic | 20.0% |
| !! | AAACATATCAGAATACAATA+TGG | + | tig0019276:94462-94481 | Msa1372340:CDS | 20.0% |
| !!! | AATTAACTAACCTTTTCTTT+CGG | - | tig0019276:94661-94680 | None:intergenic | 20.0% |
| !!! | TAAGTCATATATTCTAGAAT+GGG | + | tig0019276:94843-94862 | Msa1372340:intron | 20.0% |
| !!! | TCATAAATTCTTTCATTTTG+AGG | + | tig0019276:95208-95227 | Msa1372340:intron | 20.0% |
| !!! | CATAAATTCTTTCATTTTGA+GGG | + | tig0019276:95209-95228 | Msa1372340:intron | 20.0% |
| !! | AACATAGATTCTAATTCTTT+AGG | + | tig0019276:95544-95563 | Msa1372340:CDS | 20.0% |
| !! | TAAGACAAATCTATAAATGA+AGG | - | tig0019276:95685-95704 | None:intergenic | 20.0% |
| !! | GAGTTTCAAAAATGAAAAAA+GGG | + | tig0019276:95810-95829 | Msa1372340:CDS | 20.0% |
| !! | CAATTTGAAAATGAAAATGA+AGG | + | tig0019276:95883-95902 | Msa1372340:CDS | 20.0% |
| !! | ATAATTATTTCGGATTTACT+TGG | + | tig0019276:97135-97154 | Msa1372340:three_prime_UTR | 20.0% |
| !!! | TTTTTGGATTGACTTATTTG+AGG | + | tig0019276:90340-90359 | Msa1372340:intron | 25.0% |
| ! | AGTTGTCACCAAAAAAAAAA+GGG | - | tig0019276:90407-90426 | None:intergenic | 25.0% |
| ! | AAGTTGTCACCAAAAAAAAA+AGG | - | tig0019276:90408-90427 | None:intergenic | 25.0% |
| ! | AAGGGTAACCATAATAAAAA+TGG | - | tig0019276:90802-90821 | None:intergenic | 25.0% |
| !!! | TATTGGCTTAATTGCAATTT+TGG | + | tig0019276:90848-90867 | Msa1372340:intron | 25.0% |
| !!! | GTGATATGTTTTAAATGACT+TGG | + | tig0019276:90966-90985 | Msa1372340:intron | 25.0% |
| ! | ATTGTAGACCAAATATTTGA+TGG | + | tig0019276:91067-91086 | Msa1372340:intron | 25.0% |
| ! | ATAGATACCTATAATTGCAA+CGG | + | tig0019276:91345-91364 | Msa1372340:intron | 25.0% |
| ! | TTGTATTTCTTTGACTGAAA+AGG | + | tig0019276:91379-91398 | Msa1372340:intron | 25.0% |
| !! | TTTTGTACATAAGTTTTCCA+AGG | + | tig0019276:91438-91457 | Msa1372340:intron | 25.0% |
| !! | TTCATAATTTCTGAAAACAG+TGG | + | tig0019276:91590-91609 | Msa1372340:intron | 25.0% |
| ! | GGAACAAAACAATTTCTATA+AGG | - | tig0019276:91792-91811 | None:intergenic | 25.0% |
| !!! | AAATTGTTTTGTTCCTTAGT+TGG | + | tig0019276:91797-91816 | Msa1372340:intron | 25.0% |
| ! | ACTTTAGATATGGTTATGAT+TGG | + | tig0019276:91835-91854 | Msa1372340:intron | 25.0% |
| !! | TGAAAAATATCTTTGATGAC+AGG | + | tig0019276:91871-91890 | Msa1372340:intron | 25.0% |
| ! | ATGCTTAATAAACATGACAT+TGG | + | tig0019276:91895-91914 | Msa1372340:five_prime_UTR | 25.0% |
| ! | GGAGACAATAAAAACAATTA+TGG | - | tig0019276:92075-92094 | None:intergenic | 25.0% |
| ! | TCTTATATGGAAACGAATTA+GGG | - | tig0019276:92141-92160 | None:intergenic | 25.0% |
| ! | CTATATGATTTCTCAATGAT+AGG | - | tig0019276:92542-92561 | None:intergenic | 25.0% |
| ! | CTATCATTGAGAAATCATAT+AGG | + | tig0019276:92540-92559 | Msa1372340:intron | 25.0% |
| ! | AGAAACAATCTCTAATTAAG+CGG | - | tig0019276:92578-92597 | None:intergenic | 25.0% |
| ! | ATTTCAATGAATGTGTTACA+GGG | - | tig0019276:92607-92626 | None:intergenic | 25.0% |
| !! | TGAAATGATTTTCCTTACTT+TGG | + | tig0019276:92621-92640 | Msa1372340:intron | 25.0% |
| ! | CAGAATGCTTAACATTATAT+GGG | - | tig0019276:92828-92847 | None:intergenic | 25.0% |
| ! | ACAGAATGCTTAACATTATA+TGG | - | tig0019276:92829-92848 | None:intergenic | 25.0% |
| !! | TTCAAGTTTACCATTTAACA+AGG | - | tig0019276:93102-93121 | None:intergenic | 25.0% |
| !! | TCTTTAATATCCCTTTTAAC+TGG | + | tig0019276:93197-93216 | Msa1372340:intron | 25.0% |
| ! | AAAATTCAAATTGAACCTCA+AGG | - | tig0019276:93238-93257 | None:intergenic | 25.0% |
| !! | TTGAGGTTCAATTTGAATTT+TGG | + | tig0019276:93237-93256 | Msa1372340:intron | 25.0% |
| !!! | ATTTGAATTTTGGCATGATA+TGG | + | tig0019276:93247-93266 | Msa1372340:intron | 25.0% |
| ! | ATAAAAGCAAACATCTTATG+AGG | + | tig0019276:93345-93364 | Msa1372340:intron | 25.0% |
| ! | TACCATATGATAGAACATTA+CGG | + | tig0019276:93402-93421 | Msa1372340:intron | 25.0% |
| !!! | GGTTTGATTTTACGTTTTTA+TGG | + | tig0019276:93580-93599 | Msa1372340:intron | 25.0% |
| ! | TTACAAACTGATTATTGTGT+TGG | - | tig0019276:93737-93756 | None:intergenic | 25.0% |
| ! | CAATAATCAGTTTGTAATAG+AGG | + | tig0019276:93740-93759 | Msa1372340:CDS | 25.0% |
| !! | TTCTGGTATTCTTTCATTTT+GGG | - | tig0019276:93874-93893 | None:intergenic | 25.0% |
| !!! | TTTCTGGTATTCTTTCATTT+TGG | - | tig0019276:93875-93894 | None:intergenic | 25.0% |
| ! | AATGAAAGAATACCAGAAAA+AGG | + | tig0019276:93876-93895 | Msa1372340:CDS | 25.0% |
| !! | TCTTGAGATATGTCATTTAT+TGG | - | tig0019276:94110-94129 | None:intergenic | 25.0% |
| !! | CAATTAATTTTGCAGACAAA+GGG | - | tig0019276:94248-94267 | None:intergenic | 25.0% |
| !! | TCAATTAATTTTGCAGACAA+AGG | - | tig0019276:94249-94268 | None:intergenic | 25.0% |
| !! | AAATCCAATGTTTTCTTTTG+AGG | - | tig0019276:94491-94510 | None:intergenic | 25.0% |
| ! | TAAGAAGATAAGATCTCAAA+TGG | + | tig0019276:94552-94571 | Msa1372340:CDS | 25.0% |
| !!! | AATTGCATTTTGTTTTGATG+TGG | + | tig0019276:94677-94696 | Msa1372340:intron | 25.0% |
| !!! | ATTGCATTTTGTTTTGATGT+GGG | + | tig0019276:94678-94697 | Msa1372340:intron | 25.0% |
| !! | GTAAGTCATATATTCTAGAA+TGG | + | tig0019276:94842-94861 | Msa1372340:intron | 25.0% |
| ! | TTCCTTAACGTAAAAAATGA+GGG | - | tig0019276:94944-94963 | None:intergenic | 25.0% |
| ! | ATTCCTTAACGTAAAAAATG+AGG | - | tig0019276:94945-94964 | None:intergenic | 25.0% |
| !!! | GTTTTTGTAAGATGGTTTTA+TGG | + | tig0019276:95009-95028 | Msa1372340:intron | 25.0% |
| !!! | ATGGTTTTATGGTATATTCA+TGG | + | tig0019276:95020-95039 | Msa1372340:intron | 25.0% |
| ! | TATTAGTTAGAACTCTAATC+AGG | - | tig0019276:95061-95080 | None:intergenic | 25.0% |
| !! | TTTCACTATTTTCACTTGAT+TGG | + | tig0019276:95158-95177 | Msa1372340:intron | 25.0% |
| ! | TTGTAATACAAAGAAACTGT+TGG | - | tig0019276:95368-95387 | None:intergenic | 25.0% |
| ! | GGAGTTTCAAAAATGAAAAA+AGG | + | tig0019276:95809-95828 | Msa1372340:CDS | 25.0% |
| !! | CTGTTATCAAAATTTTGCAT+AGG | - | tig0019276:96171-96190 | None:intergenic | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | + | tig0019276:96188-96207 | Msa1372340:intron | 25.0% |
| !!! | ATGTTTTTGTAAACCAAAAG+AGG | + | tig0019276:96231-96250 | Msa1372340:intron | 25.0% |
| ! | TTAAAACCAAATTGTGCATA+AGG | + | tig0019276:96337-96356 | Msa1372340:CDS | 25.0% |
| ! | TAAAACCAAATTGTGCATAA+GGG | + | tig0019276:96338-96357 | Msa1372340:CDS | 25.0% |
| ! | CATATTATAACAAACGCAAA+TGG | + | tig0019276:96399-96418 | Msa1372340:CDS | 25.0% |
| !! | TAGACCAAAACAATTCTTTT+TGG | + | tig0019276:96655-96674 | Msa1372340:intron | 25.0% |
| !! | AGATCCAAAAAGAATTGTTT+TGG | - | tig0019276:96662-96681 | None:intergenic | 25.0% |
| !!! | TAAAAGCTTTTTCTCTACAT+CGG | - | tig0019276:97028-97047 | None:intergenic | 25.0% |
| !! | ATGTAGAGAAAAAGCTTTTA+GGG | + | tig0019276:97028-97047 | Msa1372340:CDS | 25.0% |
| ! | TTATACATCATCTTATACGA+TGG | - | tig0019276:97119-97138 | None:intergenic | 25.0% |
| !! | TCTTTTGCTTAAAGATACAA+AGG | - | tig0019276:97359-97378 | None:intergenic | 25.0% |
| TTTGAGCAAGAAGTGATTAT+TGG | - | tig0019276:89882-89901 | None:intergenic | 30.0% | |
| TTGATTAGAACGTAGAAATC+TGG | + | tig0019276:90185-90204 | Msa1372340:intron | 30.0% | |
| GATGTAGTGTTTGGATAATA+AGG | + | tig0019276:90210-90229 | Msa1372340:intron | 30.0% | |
| GTGTTTGGATAATAAGGAAA+CGG | + | tig0019276:90216-90235 | Msa1372340:intron | 30.0% | |
| ! | TTAATTACTACACGCGTTTT+TGG | + | tig0019276:90324-90343 | Msa1372340:intron | 30.0% |
| ! | AACATTTATGAGGTTGTTTC+AGG | + | tig0019276:90378-90397 | Msa1372340:intron | 30.0% |
| ! | ACATTTATGAGGTTGTTTCA+GGG | + | tig0019276:90379-90398 | Msa1372340:intron | 30.0% |
| !! | TTTTTGGTGACAACTTACAA+AGG | + | tig0019276:90412-90431 | Msa1372340:intron | 30.0% |
| TTAACTTCAACTTACAACAC+AGG | - | tig0019276:90537-90556 | None:intergenic | 30.0% | |
| GAGAGAAAGTTGTCATAAAA+TGG | - | tig0019276:90599-90618 | None:intergenic | 30.0% | |
| !! | AGAAAAAATAGGTATTGGCA+CGG | - | tig0019276:90668-90687 | None:intergenic | 30.0% |
| ! | TTTTCACCATATCGAGTATT+TGG | + | tig0019276:90879-90898 | Msa1372340:intron | 30.0% |
| ATGGAAAACTATCAACATCA+AGG | + | tig0019276:91003-91022 | Msa1372340:intron | 30.0% | |
| TAGACCAAATATTTGATGGA+GGG | + | tig0019276:91071-91090 | Msa1372340:intron | 30.0% | |
| ! | TTTTCACCATTTTGCGAAAT+TGG | - | tig0019276:91127-91146 | None:intergenic | 30.0% |
| TTTCGCAAAATGGTGAAAAT+AGG | + | tig0019276:91128-91147 | Msa1372340:intron | 30.0% | |
| TTCGCAAAATGGTGAAAATA+GGG | + | tig0019276:91129-91148 | Msa1372340:intron | 30.0% | |
| AACATACATTAGCTAAGGAA+AGG | - | tig0019276:91204-91223 | None:intergenic | 30.0% | |
| TGACAAACATACATTAGCTA+AGG | - | tig0019276:91209-91228 | None:intergenic | 30.0% | |
| CTAATGTATGTTTGTCAAAC+TGG | + | tig0019276:91212-91231 | Msa1372340:intron | 30.0% | |
| ! | TTGTCAAACTGGTCTATAAT+TGG | + | tig0019276:91223-91242 | Msa1372340:intron | 30.0% |
| CAGCTTATGAAACTTAAAAC+AGG | + | tig0019276:91295-91314 | Msa1372340:intron | 30.0% | |
| TGATACTAACAGTTCATAAC+CGG | - | tig0019276:91557-91576 | None:intergenic | 30.0% | |
| ! | CCATATCTAAAGTCACAAAT+TGG | - | tig0019276:91828-91847 | None:intergenic | 30.0% |
| CCAATTTGTGACTTTAGATA+TGG | + | tig0019276:91825-91844 | Msa1372340:intron | 30.0% | |
| GTTAAGATTGGAATTTCAAG+TGG | - | tig0019276:92096-92115 | None:intergenic | 30.0% | |
| GTCTTATATGGAAACGAATT+AGG | - | tig0019276:92142-92161 | None:intergenic | 30.0% | |
| !! | ATCGTATTTGTGGTCTTATA+TGG | - | tig0019276:92154-92173 | None:intergenic | 30.0% |
| GAAAAATGTCATCGTATTTG+TGG | - | tig0019276:92164-92183 | None:intergenic | 30.0% | |
| !! | TTATCCTGAACTTGTTAAGA+TGG | + | tig0019276:92244-92263 | Msa1372340:intron | 30.0% |
| GAGAAGTGACAACTATAAAA+GGG | - | tig0019276:92412-92431 | None:intergenic | 30.0% | |
| TGAGAAGTGACAACTATAAA+AGG | - | tig0019276:92413-92432 | None:intergenic | 30.0% | |
| GAAACAATCTCTAATTAAGC+GGG | - | tig0019276:92577-92596 | None:intergenic | 30.0% | |
| CATTTCAATGAATGTGTTAC+AGG | - | tig0019276:92608-92627 | None:intergenic | 30.0% | |
| AGTAGCATAATCTTATAAGC+AGG | + | tig0019276:92924-92943 | Msa1372340:intron | 30.0% | |
| AGAACTCAATCCTTGTTAAA+TGG | + | tig0019276:93089-93108 | Msa1372340:exon | 30.0% | |
| TATCTGATGACCAGTTAAAA+GGG | - | tig0019276:93210-93229 | None:intergenic | 30.0% | |
| TTATCTGATGACCAGTTAAA+AGG | - | tig0019276:93211-93230 | None:intergenic | 30.0% | |
| TTGTGGTAAAAAATTGACCT+CGG | - | tig0019276:93275-93294 | None:intergenic | 30.0% | |
| TACTGATATCAGCAGTAAAA+AGG | - | tig0019276:93489-93508 | None:intergenic | 30.0% | |
| ATTACTTATGTAATCTGGCA+TGG | - | tig0019276:93621-93640 | None:intergenic | 30.0% | |
| AGCACATTACTTATGTAATC+TGG | - | tig0019276:93626-93645 | None:intergenic | 30.0% | |
| GTGTTACAGTTTGAAGATAA+CGG | + | tig0019276:93660-93679 | Msa1372340:intron | 30.0% | |
| TGTTACAGTTTGAAGATAAC+GGG | + | tig0019276:93661-93680 | Msa1372340:intron | 30.0% | |
| ATTGATGCTATAAAGAGTAG+TGG | + | tig0019276:93792-93811 | Msa1372340:CDS | 30.0% | |
| !!! | CTCAGTTTTCTTGATAATGA+TGG | + | tig0019276:94140-94159 | Msa1372340:CDS | 30.0% |
| !!! | GTTTTCTTGATAATGATGGA+TGG | + | tig0019276:94144-94163 | Msa1372340:CDS | 30.0% |
| !! | AGAAGCTGTGATTTAACTTT+TGG | + | tig0019276:94316-94335 | Msa1372340:intron | 30.0% |
| !! | CTGTGATTTAACTTTTGGAA+TGG | + | tig0019276:94321-94340 | Msa1372340:CDS | 30.0% |
| GATTCCTCAAAAGAAAACAT+TGG | + | tig0019276:94484-94503 | Msa1372340:CDS | 30.0% | |
| AGAAAACATTGGATTTCTAC+CGG | + | tig0019276:94495-94514 | Msa1372340:CDS | 30.0% | |
| !! | TTTTTGTTTGAACCATTGAC+CGG | - | tig0019276:94517-94536 | None:intergenic | 30.0% |
| ATCTTATCTTCTTATCACCA+GGG | - | tig0019276:94546-94565 | None:intergenic | 30.0% | |
| !! | TGAACATTGATAATGAAGCA+GGG | - | tig0019276:94597-94616 | None:intergenic | 30.0% |
| ! | CGTCTATAGTTTTTGTAAGA+TGG | + | tig0019276:95001-95020 | Msa1372340:intron | 30.0% |
| ! | AAAGCACTATTCACGAAAAA+TGG | - | tig0019276:95133-95152 | None:intergenic | 30.0% |
| AATTTATGAGTCCTGCATAA+AGG | - | tig0019276:95197-95216 | None:intergenic | 30.0% | |
| !! | TCATTTTGAGGGTAATTTGT+TGG | + | tig0019276:95220-95239 | Msa1372340:intron | 30.0% |
| !!! | CATTTTGAGGGTAATTTGTT+GGG | + | tig0019276:95221-95240 | Msa1372340:intron | 30.0% |
| TCACACTAATAAAATACACC+AGG | - | tig0019276:95301-95320 | None:intergenic | 30.0% | |
| AATATGCAGACATAAATCAG+CGG | + | tig0019276:95464-95483 | Msa1372340:CDS | 30.0% | |
| TTAGAGCATGACTAAATTCT+AGG | - | tig0019276:95600-95619 | None:intergenic | 30.0% | |
| !!! | TCTCTTCTCATTAGTTTTTG+AGG | - | tig0019276:95755-95774 | None:intergenic | 30.0% |
| !!! | TTTTGAAACTCCTACTTAAG+AGG | - | tig0019276:95801-95820 | None:intergenic | 30.0% |
| ! | TATTTGCTTCAAGTGAGTTT+TGG | - | tig0019276:96002-96021 | None:intergenic | 30.0% |
| ! | TAATAAACCTTAGCCTCTTT+TGG | - | tig0019276:96247-96266 | None:intergenic | 30.0% |
| !! | TTTCACTTTTCAGCAATAAG+TGG | - | tig0019276:96285-96304 | None:intergenic | 30.0% |
| TGCAATCAAAAAAAGGTGAT+TGG | - | tig0019276:96309-96328 | None:intergenic | 30.0% | |
| ATCCAACTGCAATCAAAAAA+AGG | - | tig0019276:96316-96335 | None:intergenic | 30.0% | |
| ATTAATCTGTCTCGATAACA+AGG | + | tig0019276:96503-96522 | Msa1372340:intron | 30.0% | |
| ACATGTTTCAATGAAGTAGA+AGG | + | tig0019276:96896-96915 | Msa1372340:intron | 30.0% | |
| ! | GATGTAGAGAAAAAGCTTTT+AGG | + | tig0019276:97027-97046 | Msa1372340:CDS | 30.0% |
| ! | TTACATTTGTGCTGATCATA+AGG | + | tig0019276:97243-97262 | Msa1372340:three_prime_UTR | 30.0% |
| ! | TACATTTGTGCTGATCATAA+GGG | + | tig0019276:97244-97263 | Msa1372340:three_prime_UTR | 30.0% |
| !!! | GCTTTTTTTTCGCGTTGTTT+GGG | - | tig0019276:89857-89876 | None:intergenic | 35.0% |
| !!! | AGCTTTTTTTTCGCGTTGTT+TGG | - | tig0019276:89858-89877 | None:intergenic | 35.0% |
| ! | TTCTTGCTCAAATCACGTTT+TGG | + | tig0019276:89890-89909 | Msa1372340:five_prime_UTR | 35.0% |
| ! | AATCTGGTTGATGTAGTGTT+TGG | + | tig0019276:90201-90220 | Msa1372340:intron | 35.0% |
| !!! | TCAGGGAACCCTTTTTTTTT+TGG | + | tig0019276:90396-90415 | Msa1372340:intron | 35.0% |
| CTCGATATGGTGAAAATAGT+GGG | - | tig0019276:90875-90894 | None:intergenic | 35.0% | |
| ACTCGATATGGTGAAAATAG+TGG | - | tig0019276:90876-90895 | None:intergenic | 35.0% | |
| GTAGACCAAATATTTGATGG+AGG | + | tig0019276:91070-91089 | Msa1372340:intron | 35.0% | |
| ! | AACTGGTCTATAATTGGTGA+AGG | + | tig0019276:91229-91248 | Msa1372340:intron | 35.0% |
| ! | AATTGGTGAAGGTTTTTACC+AGG | + | tig0019276:91240-91259 | Msa1372340:intron | 35.0% |
| TATAATTGCAACGGTAGTGA+CGG | + | tig0019276:91354-91373 | Msa1372340:intron | 35.0% | |
| TGAACTGTTAGTATCATCGA+TGG | + | tig0019276:91561-91580 | Msa1372340:intron | 35.0% | |
| CACCTGACACACAATATAAT+TGG | + | tig0019276:91737-91756 | Msa1372340:intron | 35.0% | |
| TGCCAATTATATTGTGTGTC+AGG | - | tig0019276:91742-91761 | None:intergenic | 35.0% | |
| CACCACTAATGATACATTCA+AGG | - | tig0019276:91927-91946 | None:intergenic | 35.0% | |
| CTTGAATGTATCATTAGTGG+TGG | + | tig0019276:91925-91944 | Msa1372340:five_prime_UTR | 35.0% | |
| CAGATGTTTGACATTCATCT+CGG | - | tig0019276:91960-91979 | None:intergenic | 35.0% | |
| GTCAAACATCTGTATGTTTG+AGG | + | tig0019276:91968-91987 | Msa1372340:five_prime_UTR | 35.0% | |
| GGTGCTTTATGAGTATATTG+TGG | - | tig0019276:92054-92073 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTGAGTCACCTT+TGG | + | tig0019276:92176-92195 | Msa1372340:intron | 35.0% |
| TAAATGTCTCAAACCCAAAC+TGG | + | tig0019276:92278-92297 | Msa1372340:intron | 35.0% | |
| TAACAAGGTTACTCCAGTTT+GGG | - | tig0019276:92294-92313 | None:intergenic | 35.0% | |
| AGGTCGTCTAAAAGAATTTG+AGG | - | tig0019276:92522-92541 | None:intergenic | 35.0% | |
| GCTAAATATATGGCATCACA+GGG | - | tig0019276:92650-92669 | None:intergenic | 35.0% | |
| TGTACATAGAAATGCTCACT+GGG | - | tig0019276:92680-92699 | None:intergenic | 35.0% | |
| ATGTACATAGAAATGCTCAC+TGG | - | tig0019276:92681-92700 | None:intergenic | 35.0% | |
| ! | TAATGCTTGGTAGCATATCT+TGG | + | tig0019276:92775-92794 | Msa1372340:intron | 35.0% |
| ATCGGCAATATGTTTCTCAA+GGG | - | tig0019276:93026-93045 | None:intergenic | 35.0% | |
| AATCGGCAATATGTTTCTCA+AGG | - | tig0019276:93027-93046 | None:intergenic | 35.0% | |
| ! | AGAAACATATTGCCGATTAG+TGG | + | tig0019276:93029-93048 | Msa1372340:five_prime_UTR | 35.0% |
| TGAGCAAGATAGGAAAAAAG+TGG | - | tig0019276:93170-93189 | None:intergenic | 35.0% | |
| ! | TTTTCCTATCTTGCTCAAGT+CGG | + | tig0019276:93173-93192 | Msa1372340:intron | 35.0% |
| TCATCAGATAAACTTCCTTG+AGG | + | tig0019276:93220-93239 | Msa1372340:intron | 35.0% | |
| !!! | GAGGTCAATTTTTTACCACA+AGG | + | tig0019276:93274-93293 | Msa1372340:intron | 35.0% |
| AAGGTTTCTGAATAACCTTG+TGG | - | tig0019276:93292-93311 | None:intergenic | 35.0% | |
| !! | ATTGTGTTGGCTACTAGAAT+GGG | - | tig0019276:93724-93743 | None:intergenic | 35.0% |
| !! | TATTGTGTTGGCTACTAGAA+TGG | - | tig0019276:93725-93744 | None:intergenic | 35.0% |
| ! | AGTGGTAATGTTAGTAGCTA+TGG | + | tig0019276:93810-93829 | Msa1372340:CDS | 35.0% |
| GAATACCAGAAAAAGGTTCA+TGG | + | tig0019276:93883-93902 | Msa1372340:CDS | 35.0% | |
| ACTCATACAGAGAAGCAAAA+GGG | + | tig0019276:93946-93965 | Msa1372340:CDS | 35.0% | |
| AAGAGCAGCAATATAGATTC+TGG | + | tig0019276:94008-94027 | Msa1372340:CDS | 35.0% | |
| TTGTAAGAAACCCTCCAATT+TGG | + | tig0019276:94203-94222 | Msa1372340:intron | 35.0% | |
| GAAAATTCTGCCAAATTGGA+GGG | - | tig0019276:94216-94235 | None:intergenic | 35.0% | |
| TGCATAATGAAGCTCTATGT+CGG | - | tig0019276:94425-94444 | None:intergenic | 35.0% | |
| TCTTATCTTCTTATCACCAG+GGG | - | tig0019276:94545-94564 | None:intergenic | 35.0% | |
| GATCTTATCTTCTTATCACC+AGG | - | tig0019276:94547-94566 | None:intergenic | 35.0% | |
| GATAAGATCTCAAATGGATG+TGG | + | tig0019276:94558-94577 | Msa1372340:CDS | 35.0% | |
| !! | CTGAACATTGATAATGAAGC+AGG | - | tig0019276:94598-94617 | None:intergenic | 35.0% |
| AGTGAATCAGACACAAAATC+TGG | + | tig0019276:94616-94635 | Msa1372340:CDS | 35.0% | |
| ATCTGGTCATAAAGATGTCT+TGG | + | tig0019276:94633-94652 | Msa1372340:CDS | 35.0% | |
| TGTGAAGCTATATTTCGATG+TGG | + | tig0019276:94724-94743 | Msa1372340:intron | 35.0% | |
| GTGAAGCTATATTTCGATGT+GGG | + | tig0019276:94725-94744 | Msa1372340:intron | 35.0% | |
| GGTTCTTTATGAAAACCACA+AGG | + | tig0019276:94746-94765 | Msa1372340:intron | 35.0% | |
| TATATGACTTACGAGATCAG+AGG | - | tig0019276:94834-94853 | None:intergenic | 35.0% | |
| !! | ATTCTAGAATGGGATTCAAC+CGG | + | tig0019276:94853-94872 | Msa1372340:intron | 35.0% |
| CTTAACGTAAAAAATGAGGG+TGG | - | tig0019276:94941-94960 | None:intergenic | 35.0% | |
| !!! | CACCCTCATTTTTTACGTTA+AGG | + | tig0019276:94939-94958 | Msa1372340:intron | 35.0% |
| ! | ATACTGCTGAGTGTACTTTT+AGG | + | tig0019276:95090-95109 | Msa1372340:intron | 35.0% |
| ! | TACTGCTGAGTGTACTTTTA+GGG | + | tig0019276:95091-95110 | Msa1372340:intron | 35.0% |
| ACAATGCAAGTTTGATTGCA+AGG | + | tig0019276:95256-95275 | Msa1372340:intron | 35.0% | |
| CAATGCAAGTTTGATTGCAA+GGG | + | tig0019276:95257-95276 | Msa1372340:intron | 35.0% | |
| TTTATGTCTGCATATTGCTC+AGG | - | tig0019276:95460-95479 | None:intergenic | 35.0% | |
| TTTGTCTTATGCCTCAAACA+TGG | + | tig0019276:95696-95715 | Msa1372340:CDS | 35.0% | |
| ATGAGAACTATCCATGTTTG+AGG | - | tig0019276:95710-95729 | None:intergenic | 35.0% | |
| TCAAACATGGATAGTTCTCA+TGG | + | tig0019276:95709-95728 | Msa1372340:CDS | 35.0% | |
| TAGTTCTCATGGTCATTCTT+TGG | + | tig0019276:95720-95739 | Msa1372340:CDS | 35.0% | |
| !! | GAAATGCTATTTCACAGTCA+AGG | + | tig0019276:95838-95857 | Msa1372340:CDS | 35.0% |
| AAGGTCATAGTAAAGTTCGA+GGG | + | tig0019276:95902-95921 | Msa1372340:CDS | 35.0% | |
| TTGTAAACCAAAAGAGGCTA+AGG | + | tig0019276:96237-96256 | Msa1372340:intron | 35.0% | |
| !!! | CACCTTTTTTTGATTGCAGT+TGG | + | tig0019276:96311-96330 | Msa1372340:intron | 35.0% |
| GATAACACATAGCTTCATTC+AGG | + | tig0019276:96718-96737 | Msa1372340:intron | 35.0% | |
| CCAACACAAATCCTATTGAT+CGG | + | tig0019276:96766-96785 | Msa1372340:CDS | 35.0% | |
| TAGCACACTTATTGTTTCAC+AGG | + | tig0019276:96793-96812 | Msa1372340:CDS | 35.0% | |
| ! | TTGAAAGGTGCAATATCGTT+TGG | - | tig0019276:96843-96862 | None:intergenic | 35.0% |
| TGAAGTAGAAGGCTATTGTT+TGG | + | tig0019276:96907-96926 | Msa1372340:intron | 35.0% | |
| TTAAACCAGAAAATGAGGCT+AGG | - | tig0019276:96934-96953 | None:intergenic | 35.0% | |
| GTCAGTTAAACCAGAAAATG+AGG | - | tig0019276:96939-96958 | None:intergenic | 35.0% | |
| ! | AAGTTGGTTTCACTTTCACT+AGG | - | tig0019276:97061-97080 | None:intergenic | 35.0% |
| AGTGAAAGTGAAACCAACTT+TGG | + | tig0019276:97061-97080 | Msa1372340:exon | 35.0% | |
| ACAAATGTACATCAGTGTCA+TGG | - | tig0019276:97195-97214 | None:intergenic | 35.0% | |
| TTGAAGGAAGAAGAGTCTTC+TGG | + | tig0019276:89812-89831 | Msa1372340:five_prime_UTR | 40.0% | |
| !! | TTTTTCGCGTTGTTTGGGAT+GGG | - | tig0019276:89852-89871 | None:intergenic | 40.0% |
| !!! | TTTTTTCGCGTTGTTTGGGA+TGG | - | tig0019276:89853-89872 | None:intergenic | 40.0% |
| CTTGGTATATGATGCGATGA+TGG | + | tig0019276:90984-91003 | Msa1372340:intron | 40.0% | |
| TGGTCCCTCCATCAAATATT+TGG | - | tig0019276:91078-91097 | None:intergenic | 40.0% | |
| AAGGGACCAATTTCGCAAAA+TGG | + | tig0019276:91118-91137 | Msa1372340:intron | 40.0% | |
| CATTGTGTTAAAGTAGAGCC+TGG | - | tig0019276:91261-91280 | None:intergenic | 40.0% | |
| GTCACTACCGTTGCAATTAT+AGG | - | tig0019276:91355-91374 | None:intergenic | 40.0% | |
| ! | TAAGTTTTCCAAGGTCACAC+TGG | + | tig0019276:91447-91466 | Msa1372340:intron | 40.0% |
| TCTATTAACCAGTGTGACCT+TGG | - | tig0019276:91458-91477 | None:intergenic | 40.0% | |
| ! | ACACTGGTTAATAGAGATCG+TGG | + | tig0019276:91463-91482 | Msa1372340:intron | 40.0% |
| ! | CACTGGTTAATAGAGATCGT+GGG | + | tig0019276:91464-91483 | Msa1372340:intron | 40.0% |
| TACTAACAGTTCATAACCGG+CGG | - | tig0019276:91554-91573 | None:intergenic | 40.0% | |
| ! | AGGTGCTACAGATCTAATAG+CGG | - | tig0019276:91722-91741 | None:intergenic | 40.0% |
| CAAATTGGAAACGCCAACTA+AGG | - | tig0019276:91813-91832 | None:intergenic | 40.0% | |
| CGCCTTGAATGTATCATTAG+TGG | + | tig0019276:91922-91941 | Msa1372340:five_prime_UTR | 40.0% | |
| GTTCTGCATCGTGTTAAGAT+TGG | - | tig0019276:92108-92127 | None:intergenic | 40.0% | |
| ATATGGAAACGAATTAGGGC+CGG | - | tig0019276:92137-92156 | None:intergenic | 40.0% | |
| ! | GGTTTGAGACATTTACTGAC+TGG | - | tig0019276:92273-92292 | None:intergenic | 40.0% |
| GTAACAAGGTTACTCCAGTT+TGG | - | tig0019276:92295-92314 | None:intergenic | 40.0% | |
| CTTGTTACCTTGTGATCTCA+CGG | + | tig0019276:92307-92326 | Msa1372340:intron | 40.0% | |
| TCTTATTCCGTGAGATCACA+AGG | - | tig0019276:92317-92336 | None:intergenic | 40.0% | |
| CGCTAAATATATGGCATCAC+AGG | - | tig0019276:92651-92670 | None:intergenic | 40.0% | |
| GGGGAACAACGCTAAATATA+TGG | - | tig0019276:92660-92679 | None:intergenic | 40.0% | |
| GTACATAGAAATGCTCACTG+GGG | - | tig0019276:92679-92698 | None:intergenic | 40.0% | |
| GCTATCCTATTGCTAATGCT+TGG | + | tig0019276:92762-92781 | Msa1372340:intron | 40.0% | |
| TGCTACCAAGCATTAGCAAT+AGG | - | tig0019276:92770-92789 | None:intergenic | 40.0% | |
| ! | AACATATTGCCGATTAGTGG+TGG | + | tig0019276:93032-93051 | Msa1372340:five_prime_UTR | 40.0% |
| ! | ACATATTGCCGATTAGTGGT+GGG | + | tig0019276:93033-93052 | Msa1372340:five_prime_UTR | 40.0% |
| TGTTGCAAGCAAAGAGTAGA+AGG | - | tig0019276:93144-93163 | None:intergenic | 40.0% | |
| AGGTTATTCAGAAACCTTGC+AGG | + | tig0019276:93294-93313 | Msa1372340:intron | 40.0% | |
| GGTTATTCAGAAACCTTGCA+GGG | + | tig0019276:93295-93314 | Msa1372340:intron | 40.0% | |
| CGCCGTAATGTTCTATCATA+TGG | - | tig0019276:93407-93426 | None:intergenic | 40.0% | |
| AACAACCAAACCACTAAGTG+GGG | - | tig0019276:93451-93470 | None:intergenic | 40.0% | |
| CAACAACCAAACCACTAAGT+GGG | - | tig0019276:93452-93471 | None:intergenic | 40.0% | |
| ACAACAACCAAACCACTAAG+TGG | - | tig0019276:93453-93472 | None:intergenic | 40.0% | |
| !! | TACAGTTTGAAGATAACGGG+TGG | + | tig0019276:93664-93683 | Msa1372340:intron | 40.0% |
| !! | ACAGTTTGAAGATAACGGGT+GGG | + | tig0019276:93665-93684 | Msa1372340:intron | 40.0% |
| !! | TTGTGTTGGCTACTAGAATG+GGG | - | tig0019276:93723-93742 | None:intergenic | 40.0% |
| CAGTTTGTAATAGAGGGTGA+TGG | + | tig0019276:93747-93766 | Msa1372340:CDS | 40.0% | |
| GTTAGTAGCTATGGAACTCT+CGG | + | tig0019276:93819-93838 | Msa1372340:CDS | 40.0% | |
| ! | TCAGACCATGAACCTTTTTC+TGG | - | tig0019276:93891-93910 | None:intergenic | 40.0% |
| ! | GGTGTATTTTCGTCATGTGA+TGG | + | tig0019276:93921-93940 | Msa1372340:CDS | 40.0% |
| GACTCATACAGAGAAGCAAA+AGG | + | tig0019276:93945-93964 | Msa1372340:CDS | 40.0% | |
| GGGCAAACTTCAGATAATAC+AGG | + | tig0019276:93966-93985 | Msa1372340:CDS | 40.0% | |
| AGCAGCAATATAGATTCTGG+TGG | + | tig0019276:94011-94030 | Msa1372340:CDS | 40.0% | |
| GCAGATGATACCATCTTTGA+AGG | + | tig0019276:94047-94066 | Msa1372340:CDS | 40.0% | |
| !! | TCTTGATAATGATGGATGGC+TGG | + | tig0019276:94148-94167 | Msa1372340:CDS | 40.0% |
| !! | AATGATGGATGGCTGGATAT+AGG | + | tig0019276:94155-94174 | Msa1372340:CDS | 40.0% |
| GAAACTTAGACGATGTTGAC+AGG | + | tig0019276:94177-94196 | Msa1372340:CDS | 40.0% | |
| GGAAAATTCTGCCAAATTGG+AGG | - | tig0019276:94217-94236 | None:intergenic | 40.0% | |
| TGGGGAAAATTCTGCCAAAT+TGG | - | tig0019276:94220-94239 | None:intergenic | 40.0% | |
| TTGCAGACAAAGGGAAAGAT+GGG | - | tig0019276:94239-94258 | None:intergenic | 40.0% | |
| TTTGCAGACAAAGGGAAAGA+TGG | - | tig0019276:94240-94259 | None:intergenic | 40.0% | |
| GGAGAGTCTCAATAATGAAG+AGG | + | tig0019276:94342-94361 | Msa1372340:CDS | 40.0% | |
| ATAATGAAGAGGAGTTCTGC+TGG | + | tig0019276:94353-94372 | Msa1372340:CDS | 40.0% | |
| !!! | TGCTGGTTTTCTTCTTCACA+TGG | + | tig0019276:94370-94389 | Msa1372340:CDS | 40.0% |
| ATTGGATTTCTACCGGTCAA+TGG | + | tig0019276:94502-94521 | Msa1372340:CDS | 40.0% | |
| TCAAACAAAAAGTCATCCCC+TGG | + | tig0019276:94526-94545 | Msa1372340:CDS | 40.0% | |
| GGAAATTTGTATGAGCCTTG+TGG | - | tig0019276:94764-94783 | None:intergenic | 40.0% | |
| TCCATATGATGATCCCTCAA+AGG | + | tig0019276:94781-94800 | Msa1372340:intron | 40.0% | |
| AACGTAAAAAATGAGGGTGG+AGG | - | tig0019276:94938-94957 | None:intergenic | 40.0% | |
| ATTGTGCTTGACCTTTATGC+AGG | + | tig0019276:95183-95202 | Msa1372340:intron | 40.0% | |
| TCAGCAGGAAAGCGAAAAAA+TGG | + | tig0019276:95409-95428 | Msa1372340:CDS | 40.0% | |
| ! | TATTGCTCAGGAGGAGTATA+AGG | - | tig0019276:95448-95467 | None:intergenic | 40.0% |
| AGAAGTAACACCACTAGAAG+AGG | - | tig0019276:95497-95516 | None:intergenic | 40.0% | |
| !! | TCTAGTGGTGTTACTTCTCT+TGG | + | tig0019276:95499-95518 | Msa1372340:CDS | 40.0% |
| CTATGTTCTGCTTATGCTTC+TGG | - | tig0019276:95531-95550 | None:intergenic | 40.0% | |
| CTAAATTCTAGGTGCGTTGA+AGG | - | tig0019276:95589-95608 | None:intergenic | 40.0% | |
| GGATTAAGAGCTGAACATGA+CGG | + | tig0019276:95649-95668 | Msa1372340:CDS | 40.0% | |
| TTCTCATGGTCATTCTTTGG+TGG | + | tig0019276:95723-95742 | Msa1372340:CDS | 40.0% | |
| TCCTACTTAAGAGGTGATCA+TGG | - | tig0019276:95792-95811 | None:intergenic | 40.0% | |
| GAAGGTCATAGTAAAGTTCG+AGG | + | tig0019276:95901-95920 | Msa1372340:CDS | 40.0% | |
| AGGTCATAGTAAAGTTCGAG+GGG | + | tig0019276:95903-95922 | Msa1372340:CDS | 40.0% | |
| TGCACAAACTTGAACATCAC+AGG | - | tig0019276:96067-96086 | None:intergenic | 40.0% | |
| ACTGTCCCTTATGCACAATT+TGG | - | tig0019276:96346-96365 | None:intergenic | 40.0% | |
| ACAAACGCAAATGGTTGCAT+TGG | + | tig0019276:96408-96427 | Msa1372340:CDS | 40.0% | |
| ATAGCTTCATTCAGGTGTAC+AGG | + | tig0019276:96726-96745 | Msa1372340:intron | 40.0% | |
| CCGATCAATAGGATTTGTGT+TGG | - | tig0019276:96769-96788 | None:intergenic | 40.0% | |
| TGTGCTATAGACCGATCAAT+AGG | - | tig0019276:96780-96799 | None:intergenic | 40.0% | |
| !! | AGCAAAGTTGATGGATCTGT+CGG | - | tig0019276:96819-96838 | None:intergenic | 40.0% |
| TCGTTTGGAAGCAAAGTTGA+TGG | - | tig0019276:96828-96847 | None:intergenic | 40.0% | |
| ACCTTTCAAATCCAATGCAG+CGG | + | tig0019276:96854-96873 | Msa1372340:CDS | 40.0% | |
| ATGAAAACATACCGCTGCAT+TGG | - | tig0019276:96868-96887 | None:intergenic | 40.0% | |
| CATGGCATTCAATGCAAAAC+TGG | - | tig0019276:97177-97196 | None:intergenic | 40.0% | |
| CTTACAACACAGGCTCTGTT+TGG | - | tig0019276:90527-90546 | None:intergenic | 45.0% | |
| TGGCACGGAAATCAAAGCAA+TGG | - | tig0019276:90653-90672 | None:intergenic | 45.0% | |
| GGGAGACCAAATACTCGATA+TGG | - | tig0019276:90888-90907 | None:intergenic | 45.0% | |
| TAACCACAAGAATTCACCGC+CGG | + | tig0019276:91535-91554 | Msa1372340:intron | 45.0% | |
| CACGATGCAGAACATACAAC+CGG | + | tig0019276:92115-92134 | Msa1372340:intron | 45.0% | |
| TGTATGAGAGCAGAGTCCAA+AGG | - | tig0019276:92195-92214 | None:intergenic | 45.0% | |
| GCGACCATCTTAACAAGTTC+AGG | - | tig0019276:92251-92270 | None:intergenic | 45.0% | |
| CGTGAGATCACAAGGTAACA+AGG | - | tig0019276:92309-92328 | None:intergenic | 45.0% | |
| ATCACAGGGATGCCAAAGTA+AGG | - | tig0019276:92636-92655 | None:intergenic | 45.0% | |
| AATCCAGGTTCAACGTGCTA+GGG | + | tig0019276:92956-92975 | Msa1372340:intron | 45.0% | |
| GCAAGCAAAGAGTAGAAGGA+AGG | - | tig0019276:93140-93159 | None:intergenic | 45.0% | |
| !! | AGAACCGACTTGAGCAAGAT+AGG | - | tig0019276:93180-93199 | None:intergenic | 45.0% |
| TTTGGCATGATATGGTTCCG+AGG | + | tig0019276:93255-93274 | Msa1372340:intron | 45.0% | |
| ! | GAGGGAAATTTTACCCTGCA+AGG | - | tig0019276:93311-93330 | None:intergenic | 45.0% |
| ACTGCTGATATCAGTAGCAG+TGG | + | tig0019276:93493-93512 | Msa1372340:intron | 45.0% | |
| CTGCTGATATCAGTAGCAGT+GGG | + | tig0019276:93494-93513 | Msa1372340:intron | 45.0% | |
| !! | CAGTTTGAAGATAACGGGTG+GGG | + | tig0019276:93666-93685 | Msa1372340:intron | 45.0% |
| CTATGGAACTCTCGGTAAAG+AGG | + | tig0019276:93827-93846 | Msa1372340:CDS | 45.0% | |
| CATGACGAAAATACACCCTC+AGG | - | tig0019276:93918-93937 | None:intergenic | 45.0% | |
| CACACACTTGCCTTCAAAGA+TGG | - | tig0019276:94060-94079 | None:intergenic | 45.0% | |
| ! | CATCTTTGAAGGCAAGTGTG+TGG | + | tig0019276:94058-94077 | Msa1372340:CDS | 45.0% |
| TGCAGACAAAGGGAAAGATG+GGG | - | tig0019276:94238-94257 | None:intergenic | 45.0% | |
| ! | TTCTTCTTCACATGGTGCTG+AGG | + | tig0019276:94378-94397 | Msa1372340:CDS | 45.0% |
| ! | TCTTCTTCACATGGTGCTGA+GGG | + | tig0019276:94379-94398 | Msa1372340:CDS | 45.0% |
| !! | TGTCTTGGTGCCGAAAGAAA+AGG | + | tig0019276:94648-94667 | Msa1372340:CDS | 45.0% |
| ! | GCCTTTGAGGGATCATCATA+TGG | - | tig0019276:94785-94804 | None:intergenic | 45.0% |
| CTATGATCACACTCAGAGAC+CGG | - | tig0019276:94875-94894 | None:intergenic | 45.0% | |
| TGCAAGTTTGATTGCAAGGG+TGG | + | tig0019276:95260-95279 | Msa1372340:intron | 45.0% | |
| GCAAGTTTGATTGCAAGGGT+GGG | + | tig0019276:95261-95280 | Msa1372340:intron | 45.0% | |
| !! | TGGGTTAGTTTCTGAATGCC+TGG | + | tig0019276:95280-95299 | Msa1372340:intron | 45.0% |
| AAGCTTCCAAAGTCATCAGC+AGG | + | tig0019276:95394-95413 | Msa1372340:CDS | 45.0% | |
| ATGTCTGCATATTGCTCAGG+AGG | - | tig0019276:95457-95476 | None:intergenic | 45.0% | |
| TCACTCTCTTCGACTTTCTC+TGG | + | tig0019276:95628-95647 | Msa1372340:CDS | 45.0% | |
| GCCATGATCACCTCTTAAGT+AGG | + | tig0019276:95788-95807 | Msa1372340:CDS | 45.0% | |
| !! | AAAGTTCGAGGGGTTAGTCT+AGG | + | tig0019276:95913-95932 | Msa1372340:CDS | 45.0% |
| TGGTCCAGAGAAGAGCTTAT+GGG | - | tig0019276:95982-96001 | None:intergenic | 45.0% | |
| TTGGTCCAGAGAAGAGCTTA+TGG | - | tig0019276:95983-96002 | None:intergenic | 45.0% | |
| GCTCAGCACTCTTAGCTAAA+CGG | - | tig0019276:96374-96393 | None:intergenic | 45.0% | |
| GCAAATGGTTGCATTGGAGA+TGG | + | tig0019276:96414-96433 | Msa1372340:CDS | 45.0% | |
| TGAAGCATGCAGAGACACAA+TGG | + | tig0019276:96440-96459 | Msa1372340:CDS | 45.0% | |
| TGTCTCGATAACAAGGTAGC+TGG | + | tig0019276:96510-96529 | Msa1372340:intron | 45.0% | |
| !! | CTCTGAAGCCACTTTACAAC+AGG | - | tig0019276:96536-96555 | None:intergenic | 45.0% |
| ACCGCTGCATTGGATTTGAA+AGG | - | tig0019276:96858-96877 | None:intergenic | 45.0% | |
| ! | TTGGTCCTAGCCTCATTTTC+TGG | + | tig0019276:96926-96945 | Msa1372340:intron | 45.0% |
| CATGAATCAGCAAGCAATCC+AGG | + | tig0019276:96964-96983 | Msa1372340:CDS | 45.0% | |
| ATCAGCAAGCAATCCAGGAA+AGG | + | tig0019276:96969-96988 | Msa1372340:CDS | 45.0% | |
| ! | AACTGATTCTCAGCCTTTCC+TGG | - | tig0019276:96985-97004 | None:intergenic | 45.0% |
| GGCTGAGAATCAGTTCTTTC+AGG | + | tig0019276:96990-97009 | Msa1372340:CDS | 45.0% | |
| ACAGCATGATGTGCCAAAGT+TGG | - | tig0019276:97077-97096 | None:intergenic | 45.0% | |
| GGCGGTGAATTCTTGTGGTT+AGG | - | tig0019276:91536-91555 | None:intergenic | 50.0% | |
| TAACCGGCGGTGAATTCTTG+TGG | - | tig0019276:91541-91560 | None:intergenic | 50.0% | |
| CATTGAGCAGTGTGTTGAGC+TGG | + | tig0019276:92721-92740 | Msa1372340:intron | 50.0% | |
| AGCAGGCTGTTGTTCAATCC+AGG | + | tig0019276:92941-92960 | Msa1372340:intron | 50.0% | |
| CAATCCAGGTTCAACGTGCT+AGG | + | tig0019276:92955-92974 | Msa1372340:intron | 50.0% | |
| AATCCCTAGCACGTTGAACC+TGG | - | tig0019276:92962-92981 | None:intergenic | 50.0% | |
| ACGTGCTAGGGATTCAGAAG+TGG | + | tig0019276:92968-92987 | Msa1372340:five_prime_UTR | 50.0% | |
| CTAGGGATTCAGAAGTGGCT+TGG | + | tig0019276:92973-92992 | Msa1372340:five_prime_UTR | 50.0% | |
| TTTCTCAAGGGCAGTGTGTC+TGG | - | tig0019276:93014-93033 | None:intergenic | 50.0% | |
| CAGCTACACCCACCACTAAT+CGG | - | tig0019276:93044-93063 | None:intergenic | 50.0% | |
| ACCAAACCACTAAGTGGGGT+CGG | - | tig0019276:93447-93466 | None:intergenic | 50.0% | |
| GGCTACTAGAATGGGGAACT+TGG | - | tig0019276:93716-93735 | None:intergenic | 50.0% | |
| TTCATGGTCTGACACACCTG+AGG | + | tig0019276:93899-93918 | Msa1372340:CDS | 50.0% | |
| TCATGGTCTGACACACCTGA+GGG | + | tig0019276:93900-93919 | Msa1372340:CDS | 50.0% | |
| ! | CTTTGAAGGCAAGTGTGTGG+TGG | + | tig0019276:94061-94080 | Msa1372340:CDS | 50.0% |
| CGCTTTCCTGCTGATGACTT+TGG | - | tig0019276:95403-95422 | None:intergenic | 50.0% | |
| GCAGACATAAATCAGCGGTG+TGG | + | tig0019276:95469-95488 | Msa1372340:CDS | 50.0% | |
| CAGTCAAGGTTCTTCTCAGC+AGG | + | tig0019276:95852-95871 | Msa1372340:CDS | 50.0% | |
| CTCACCCATAAGCTCTTCTC+TGG | + | tig0019276:95975-95994 | Msa1372340:CDS | 50.0% | |
| ! | TAGCTTTTGCCACCTGCAAC+AGG | + | tig0019276:96020-96039 | Msa1372340:CDS | 50.0% |
| ATGCAGAGACACAATGGCTC+AGG | + | tig0019276:96446-96465 | Msa1372340:CDS | 50.0% | |
| CAATGGCTCAGGATACAAGC+AGG | + | tig0019276:96457-96476 | Msa1372340:CDS | 50.0% | |
| ! | GTAGCTGGCCTGTTGTAAAG+TGG | + | tig0019276:96525-96544 | Msa1372340:intron | 50.0% |
| ! | CCTGCTGCACAAGATTTTGG+TGG | - | tig0019276:97322-97341 | None:intergenic | 50.0% |
| CCACCAAAATCTTGTGCAGC+AGG | + | tig0019276:97319-97338 | Msa1372340:three_prime_UTR | 50.0% | |
| ! | CCACCTGCTGCACAAGATTT+TGG | - | tig0019276:97325-97344 | None:intergenic | 50.0% |
| CCAAAATCTTGTGCAGCAGG+TGG | + | tig0019276:97322-97341 | Msa1372340:three_prime_UTR | 50.0% | |
| TGAGCAGTGTGTTGAGCTGG+AGG | + | tig0019276:92724-92743 | Msa1372340:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | tig0019276:93439-93458 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | tig0019276:93438-93457 | Msa1372340:intron | 55.0% | |
| TTGCCACCTGCAACAGGTGT+TGG | + | tig0019276:96026-96045 | Msa1372340:CDS | 55.0% | |
| GTTCCAACACCTGTTGCAGG+TGG | - | tig0019276:96032-96051 | None:intergenic | 55.0% | |
| CCTGTTCCAACACCTGTTGC+AGG | - | tig0019276:96035-96054 | None:intergenic | 55.0% | |
| !! | CCTGCAACAGGTGTTGGAAC+AGG | + | tig0019276:96032-96051 | Msa1372340:CDS | 55.0% |
| GCCGACCCCACTTAGTGGTT+TGG | + | tig0019276:93443-93462 | Msa1372340:intron | 60.0% | |
| CGGTGTGGAGCCTCTTCTAG+TGG | + | tig0019276:95484-95503 | Msa1372340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019276 | gene | 89805 | 97432 | 89805 | ID=Msa1372340;Name=Msa1372340 |
| tig0019276 | mRNA | 89805 | 97432 | 89805 | ID=Msa1372340-mRNA-1;Parent=Msa1372340;Name=Msa1372340-mRNA-1;_AED=0.16;_eAED=0.16;_QI=349|1|1|1|0.62|0.66|9|370|645 |
| tig0019276 | exon | 89805 | 89911 | 89805 | ID=Msa1372340-mRNA-1:exon:2691;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 91893 | 91989 | 91893 | ID=Msa1372340-mRNA-1:exon:2692;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 92963 | 93110 | 92963 | ID=Msa1372340-mRNA-1:exon:2693;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 93669 | 94204 | 93669 | ID=Msa1372340-mRNA-1:exon:2694;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 94318 | 94669 | 94318 | ID=Msa1372340-mRNA-1:exon:2695;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 95394 | 96053 | 95394 | ID=Msa1372340-mRNA-1:exon:2696;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 96330 | 96478 | 96330 | ID=Msa1372340-mRNA-1:exon:2697;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 96740 | 96875 | 96740 | ID=Msa1372340-mRNA-1:exon:2698;Parent=Msa1372340-mRNA-1 |
| tig0019276 | exon | 96961 | 97432 | 96961 | ID=Msa1372340-mRNA-1:exon:2699;Parent=Msa1372340-mRNA-1 |
| tig0019276 | five_prime_UTR | 89805 | 89911 | 89805 | ID=Msa1372340-mRNA-1:five_prime_utr;Parent=Msa1372340-mRNA-1 |
| tig0019276 | five_prime_UTR | 91893 | 91989 | 91893 | ID=Msa1372340-mRNA-1:five_prime_utr;Parent=Msa1372340-mRNA-1 |
| tig0019276 | five_prime_UTR | 92963 | 93107 | 92963 | ID=Msa1372340-mRNA-1:five_prime_utr;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 93108 | 93110 | 93108 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 93669 | 94204 | 93669 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 94318 | 94669 | 94318 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 95394 | 96053 | 95394 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 96330 | 96478 | 96330 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 96740 | 96875 | 96740 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | CDS | 96961 | 97062 | 96961 | ID=Msa1372340-mRNA-1:cds;Parent=Msa1372340-mRNA-1 |
| tig0019276 | three_prime_UTR | 97063 | 97432 | 97063 | ID=Msa1372340-mRNA-1:three_prime_utr;Parent=Msa1372340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
