AlfalfaGEDB | Msa1201610

M. sativa cultivar zhongmu-4 / Msa1201610

KEGG: -
GO: GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005034 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009791 GO:0009927 GO:0009987 GO:0010035 GO:0010154 GO:0010375 GO:0010431 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00512.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201610	AET03757.1	97.613	1173	28	0	1	1173	1	1173	0.0	2383

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201610	sp\|Q9SXL4\|AHK1_ARATH	64.100	1195	367	17	8	1167	30	1197	0.0	1500

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1201610	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012740	Msa1201610	0.802331	5.902590e-49	-8.615850e-47
Msa0028610	Msa1201610	0.801775	7.680354e-49	-8.615850e-47
Msa0030030	Msa1201610	0.840894	6.604914e-58	-8.615850e-47
Msa0035090	Msa1201610	0.825209	5.310471e-54	-8.615850e-47
Msa0039200	Msa1201610	0.811721	6.076199e-51	-8.615850e-47
Msa0040190	Msa1201610	0.843703	1.190424e-58	-8.615850e-47
Msa0077330	Msa1201610	0.833767	4.414261e-56	-8.615850e-47
Msa0086820	Msa1201610	0.815684	8.150054e-52	-8.615850e-47
Msa0087880	Msa1201610	0.811883	5.602059e-51	-8.615850e-47
Msa0096230	Msa1201610	0.806347	8.596513e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201610	MtrunA17_Chr8g0371601	97.613	1173	28	0	1	1173	1	1173	0.0	2382
Msa1201610	MtrunA17_Chr5g0405701	74.643	1191	254	14	4	1167	28	1197	0.0	1757
Msa1201610	MtrunA17_Chr1g0197591	29.449	472	300	11	280	734	197	652	1.18e-42	169
Msa1201610	MtrunA17_Chr1g0197591	39.231	130	65	4	1024	1153	921	1036	7.28e-17	86.7
Msa1201610	MtrunA17_Chr1g0194741	29.680	438	258	13	300	709	234	649	6.56e-38	152
Msa1201610	MtrunA17_Chr8g0377481	34.375	320	186	5	424	726	345	657	1.07e-36	150
Msa1201610	MtrunA17_Chr8g0377481	36.296	135	63	3	1026	1154	838	955	5.21e-17	87.0
Msa1201610	MtrunA17_Chr3g0122391	33.228	316	193	6	427	726	396	709	2.25e-35	146
Msa1201610	MtrunA17_Chr3g0122391	34.161	161	81	4	999	1154	872	1012	3.73e-17	87.4
Msa1201610	MtrunA17_Chr8g0392301	34.091	308	153	5	460	726	372	670	5.11e-35	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1201610	AT2G17820.1	64.100	1195	367	17	8	1167	30	1197	0.0	1500
Msa1201610	AT2G47430.1	28.136	853	458	29	395	1154	318	1108	2.24e-74	269
Msa1201610	AT2G01830.2	33.141	347	205	6	405	726	406	750	7.08e-41	164
Msa1201610	AT2G01830.2	36.735	147	67	4	1015	1154	932	1059	4.21e-17	87.8
Msa1201610	AT2G01830.1	33.141	347	205	6	405	726	383	727	9.48e-41	164
Msa1201610	AT2G01830.1	36.735	147	67	4	1015	1154	909	1036	4.81e-17	87.4
Msa1201610	AT2G01830.4	33.141	347	205	6	405	726	383	727	9.48e-41	164
Msa1201610	AT2G01830.4	36.735	147	67	4	1015	1154	909	1036	4.81e-17	87.4
Msa1201610	AT2G01830.6	33.141	347	205	6	405	726	383	727	9.48e-41	164
Msa1201610	AT2G01830.6	36.735	147	67	4	1015	1154	909	1036	4.81e-17	87.4

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Find 255 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATTGTTGCAGTTGT+GGG	0.430753	8_1:+54765296	Msa1201610:CDS
AAAAGGAGTGTGGGGCACCA+CGG	0.670408	8_1:+54763190	Msa1201610:five_prime_UTR
AAAGAAACCTGAGCTTAAAA+TGG	0.319263	8_1:+54765457	Msa1201610:CDS
AAAGAGAAACTTCCTGTGTT+TGG	0.334827	8_1:-54763230	None:intergenic
AAAGTTATGGCATATTGCAT+TGG	0.497550	8_1:-54763348	None:intergenic
AAATAATATTCATACCAGAA+AGG	0.586516	8_1:-54767137	None:intergenic
AACAATGATGATGCTAACAA+AGG	0.583139	8_1:+54770070	Msa1201610:exon
AACACAGAATCCCATTTACT+CGG	0.494050	8_1:-54767829	None:intergenic
AACCAAGTCTCTAAATAGTT+TGG	0.329706	8_1:+54764598	Msa1201610:CDS
AACCACGAAGACACTGTAGT+AGG	0.600067	8_1:-54764044	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGAATCATACACTAGGTA+TGG	-	chr8_1:54763286-54763305	None:intergenic	30.0%
CTAGGTACACAACATATAAA+AGG	+	chr8_1:54763319-54763338	Msa1201610:five_prime_UTR	30.0%
AAAGTTATGGCATATTGCAT+TGG	-	chr8_1:54763351-54763370	None:intergenic	30.0%
AAGAAAAATAGCACACTAAC+AGG	+	chr8_1:54763953-54763972	Msa1201610:CDS	30.0%
AATTGTTAGAACAGCAAATC+CGG	-	chr8_1:54764435-54764454	None:intergenic	30.0%
AACCAAGTCTCTAAATAGTT+TGG	+	chr8_1:54764598-54764617	Msa1201610:CDS	30.0%
ATACATCTGTGGGAAAAAAT+TGG	-	chr8_1:54764874-54764893	None:intergenic	30.0%
ATAACTGTCAAGTATAGGAA+TGG	+	chr8_1:54764951-54764970	Msa1201610:CDS	30.0%
GGTCTCATTATATGAAAGAT+CGG	-	chr8_1:54765033-54765052	None:intergenic	30.0%
TTCATATGCTGCAAATGAAT+TGG	-	chr8_1:54765054-54765073	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	54763181	54770387	54763181	ID=Msa1201610;Name=Msa1201610
chr8_1	mRNA	54763181	54770387	54763181	ID=Msa1201610-mRNA-1;Parent=Msa1201610;Name=Msa1201610-mRNA-1;_AED=0.12;_eAED=0.12;_QI=712\|1\|1\|1\|1\|1\|13\|316\|1173
chr8_1	exon	54763181	54764081	54763181	ID=Msa1201610-mRNA-1:exon:17642;Parent=Msa1201610-mRNA-1
chr8_1	exon	54764533	54764775	54764533	ID=Msa1201610-mRNA-1:exon:17643;Parent=Msa1201610-mRNA-1
chr8_1	exon	54764888	54765646	54764888	ID=Msa1201610-mRNA-1:exon:17644;Parent=Msa1201610-mRNA-1
chr8_1	exon	54766367	54766614	54766367	ID=Msa1201610-mRNA-1:exon:17645;Parent=Msa1201610-mRNA-1
chr8_1	exon	54766728	54766887	54766728	ID=Msa1201610-mRNA-1:exon:17646;Parent=Msa1201610-mRNA-1
chr8_1	exon	54767018	54767144	54767018	ID=Msa1201610-mRNA-1:exon:17647;Parent=Msa1201610-mRNA-1
chr8_1	exon	54767228	54767317	54767228	ID=Msa1201610-mRNA-1:exon:17648;Parent=Msa1201610-mRNA-1
chr8_1	exon	54767446	54767640	54767446	ID=Msa1201610-mRNA-1:exon:17649;Parent=Msa1201610-mRNA-1
chr8_1	exon	54767821	54767890	54767821	ID=Msa1201610-mRNA-1:exon:17650;Parent=Msa1201610-mRNA-1
chr8_1	exon	54768057	54768099	54768057	ID=Msa1201610-mRNA-1:exon:17651;Parent=Msa1201610-mRNA-1
chr8_1	exon	54768471	54768611	54768471	ID=Msa1201610-mRNA-1:exon:17652;Parent=Msa1201610-mRNA-1
chr8_1	exon	54768698	54769729	54768698	ID=Msa1201610-mRNA-1:exon:17653;Parent=Msa1201610-mRNA-1
chr8_1	exon	54769847	54770387	54769847	ID=Msa1201610-mRNA-1:exon:17654;Parent=Msa1201610-mRNA-1
chr8_1	five_prime_UTR	54763181	54763892	54763181	ID=Msa1201610-mRNA-1:five_prime_utr;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54763893	54764081	54763893	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54764533	54764775	54764533	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54764888	54765646	54764888	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54766367	54766614	54766367	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54766728	54766887	54766728	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54767018	54767144	54767018	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54767228	54767317	54767228	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54767446	54767640	54767446	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54767821	54767890	54767821	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54768057	54768099	54768057	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54768471	54768611	54768471	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54768698	54769729	54768698	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	CDS	54769847	54770071	54769847	ID=Msa1201610-mRNA-1:cds;Parent=Msa1201610-mRNA-1
chr8_1	three_prime_UTR	54770072	54770387	54770072	ID=Msa1201610-mRNA-1:three_prime_utr;Parent=Msa1201610-mRNA-1

Gene Sequence

>Msa1201610

ATGGCTACCAAGTGCATGCACGTTTTTGATAGATTGCTTCTGTGTTTTGCCACTTGTTGGAAGAAAAATAGCACACTAACAGGCAGAAGAAAATTCCACAAGGATGTGGAAAAAGAAGAATTCCAGTATTCAACTACTCAATGTCTCTCATCCTACTACAGTGTCTTCGTGGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACCAAGTCTCTAAATAGTTTGGCTTACGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACGGTAACCAAGGCACTCAAGCAGAAAGAGTTGAGATGTATGAATCCATGAGGGCTGTCACATGGGCACTATTTGCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAGTATAGGAATGGTTTTGTCCAAGCATTTCATAGAGACTTGAAGGATAATAATATTTTTTACATCTACACCGATCTTTCATATAATGAGACCAATTCATTTGCAGCATATGAAGACACTCATAGCAACAAGTCTGCGATTTGGTACCGGGAGCAACTTGATCCTGTCAATGGCGAGAAAATTGGAAAAGCAATGAAGATTGCACCAGAAGACTCAATAAGTATAGCTGGCCTGTCTCAAGTACCTGACGGTGTAGCTTCATGGCACGTTTCTGTGGGCAAGTTTACAGATTCACCGTTACTTTCAGCAGCATTGCCGGTTTGGGATTCTTCTAATAAAAGCATTGTTGCAGTTGTGGGAGTTACAACTGCACTTTATAGTGTAGGGCAGTTAATGAAGGAACTAGTTGATAAGCATAGTGGTCATATGTATTTGACCTCTCAAGAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTTACAAATTCAACAAAGAAACCTGAGCTTAAAATGGCTGTTGACTGTGATAACGAAGTAATAAGAGAGGGAGCGACGTGGCTAAAGAAAACATACGGGAACAATTTCCCTCCAAGTCATGAAGTTCATGAAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAATCTTGAAAAAGCTTCCTTTGGTGGGTGTAATAATCATACCAAGAAAGCATATAATGGGGGAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCACTGTGTATTATCGTCATTGGATGTGTTTGCATTTTGATATTGACAGATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTCGAAGCAAGAAGAAAGGCGGAGGCATCGAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCGGATGATCATCTCACAAATGAACAATGTGCAACCGTTACTCAAATAAGAAAATGTTCAACCGCATTGCTCCATTTACTCAATAACATCTTGGATATAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGAGGCAGAATTTGACTTTGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAATGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGAGATTCTGCGAGAGTGGTTCAAATTTTTGCAAATTTGATCAATAACTCAATCAAATTTACTCTATCTGGTCACATTATTCTGAGAGGATGGTGTGAAAATCCAAATTCTTATGGTGATAGTGAAAATTCTACCCTGGAGCAGAAGCAATTCGGATGTTCTCAGAAGACCAAAATGAAGCAACATGAGAACCATTCAAAGAAGACTTCTAATATTGATAACAAAATGATACTCTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCGAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCTATCAACTACTAGACTGCACGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAAGGCCCAGGAACACTAATGCGATTATACATGCGACTAACTGCACCCGTGGATACCACTGAACAACATTGTCAAGTCGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTGCATGGCAACATGAGTAGATTAATTACATCTAAGTGGTTACAGAAAAACGGCGTGGCCACCATGGAAGCATCTGAATGGAATGGATTAACACAAATTCTGAAAGAACTATTTCGTGCAAAAACTTCAACTCATAACAATGACTTTGATGCTCACTTTCCAGCTCCGGAGGGTCTGAATTCTAAATTTATTAGCATACAGGAATTGCCAAACCCAACATTTGTCATTGTTGTTGATATTGATCTACTAGACTTGAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAGTACTACGCGAGAGCGAAATTTGTATGGTTACAAAACCATGACTCGTCCAATACCGTAAAGACGGAGCTTCGCAAGAAAGGACATATACTAACTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGACGACGTCATAAAGGAAAGAAACGTTGAAGTACAAAAGAAAAATATGAAAGAGGATGATTTGCATGAGAGTCTTGAGATTGAATATACTCATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAATTGGTAGTTCTAATCTTGTAACTGCCAATGGAGACAAACAAAGAGAAGAGGTAGTTAGAATCAATCCATCGTCACTATACCAGAAAAGTAACTGCTTATTAGGATTAAGTAATGGATACATGGAACATAAAGAAGCATTTATTTCAACAAGAGCAAAAGGTGAAGATTCTAAAGGTAGTGAAACAAGTAGGATTAGTGGTTCAAGTAAAGCTATGAATGGAAAGAAGTCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACAGCAGTAATTCAAAGGGTGGCAACCATAATGCTCGAAAAAATGGGAGCCACCGTTGTTGCTGTAGGCGACGGACAACAGGCAGTGGATGCTCTAAATGGCATGCCTGGTGTTGAAAGAAACACAATAACATCTCAAACTGAGATTCTAAGTTTCCCTTCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGAAATAAGGAAATCAGAAATTGGAACTTCATTCCACATTCCAATCGTCGCTCTTACAGCTCATGCAATGTCGTGTGATGAAGCCAAATGTTTAGAAGTGGGCATGGATGCTTATTTAACTAAGCCAATTGACTTTAAGCTGATGGAGTCTACCATTCTTTCACTCACAAAAAGAGAAACCTTGACATCTTAA

Protein sequence

>Msa1201610

MATKCMHVFDRLLLCFATCWKKNSTLTGRRKFHKDVEKEEFQYSTTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHGNQGTQAERVEMYESMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKDNNIFYIYTDLSYNETNSFAAYEDTHSNKSAIWYREQLDPVNGEKIGKAMKIAPEDSISIAGLSQVPDGVASWHVSVGKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVDKHSGHMYLTSQEGYLLATSTNDPLLTNSTKKPELKMAVDCDNEVIREGATWLKKTYGNNFPPSHEVHEENARLGHQQYYIDSFFLILKKLPLVGVIIIPRKHIMGEADERAFKTLVILISASLCIIVIGCVCILILTDGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDHLTNEQCATVTQIRKCSTALLHLLNNILDISKVESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDSENSTLEQKQFGCSQKTKMKQHENHSKKTSNIDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYMRLTAPVDTTEQHCQVDFANNNLVVLLALHGNMSRLITSKWLQKNGVATMEASEWNGLTQILKELFRAKTSTHNNDFDAHFPAPEGLNSKFISIQELPNPTFVIVVDIDLLDLSTDIWKEQLNFLHKYYARAKFVWLQNHDSSNTVKTELRKKGHILTVNKPLYKAKMIHILDDVIKERNVEVQKKNMKEDDLHESLEIEYTHHCDVASSDGSDISEIGSSNLVTANGDKQREEVVRINPSSLYQKSNCLLGLSNGYMEHKEAFISTRAKGEDSKGSETSRISGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPGVERNTITSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSEIGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTKRETLTS*