Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664270 | XP_013454572.1 | 92.800 | 250 | 18 | 0 | 1 | 250 | 1 | 250 | 6.27e-158 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664270 | sp|Q9LJB7|BBX32_ARATH | 30.769 | 234 | 132 | 3 | 8 | 241 | 5 | 208 | 1.36e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664270 | A0A072UHJ8 | 92.800 | 250 | 18 | 0 | 1 | 250 | 1 | 250 | 2.99e-158 | 448 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0083200 | Msa0664270 | 0.832504 | 9.102551e-56 | -8.615850e-47 |
| Msa0611450 | Msa0664270 | 0.813646 | 2.303698e-51 | -8.615850e-47 |
| Msa0626140 | Msa0664270 | 0.864177 | 1.466872e-64 | -8.615850e-47 |
| Msa0628230 | Msa0664270 | 0.800468 | 1.420854e-48 | -8.615850e-47 |
| Msa0664210 | Msa0664270 | 0.957236 | 4.417182e-115 | -8.615850e-47 |
| Msa0664270 | Msa0694170 | 0.815395 | 9.449587e-52 | -8.615850e-47 |
| Msa0664270 | Msa0707870 | 0.804095 | 2.546448e-49 | -8.615850e-47 |
| Msa0664270 | Msa0722660 | 0.811934 | 5.461050e-51 | -8.615850e-47 |
| Msa0664270 | Msa0739200 | 0.820847 | 5.525104e-53 | -8.615850e-47 |
| Msa0664270 | Msa1052920 | 0.814051 | 1.875696e-51 | -8.615850e-47 |
| Msa0664270 | Msa1085570 | 0.812752 | 3.618937e-51 | -8.615850e-47 |
| Msa0664270 | Msa1337520 | 0.808867 | 2.507418e-50 | -8.615850e-47 |
| Msa0664270 | Msa1392650 | 0.808685 | 2.742337e-50 | -8.615850e-47 |
| Msa0664270 | Msa1412450 | 0.808984 | 2.367859e-50 | -8.615850e-47 |
| Msa0664270 | Msa1427900 | 0.803326 | 3.677757e-49 | -8.615850e-47 |
| Msa0664270 | Msa1434710 | 0.811658 | 6.270468e-51 | -8.615850e-47 |
| Msa0664270 | Msa1451080 | 0.800869 | 1.177217e-48 | -8.615850e-47 |
| Msa0138380 | Msa0664270 | 0.800570 | 1.354896e-48 | -8.615850e-47 |
| Msa0223780 | Msa0664270 | 0.822172 | 2.730472e-53 | -8.615850e-47 |
| Msa0232290 | Msa0664270 | 0.815170 | 1.060151e-51 | -8.615850e-47 |
| Msa0375270 | Msa0664270 | 0.806303 | 8.784287e-50 | -8.615850e-47 |
| Msa0396640 | Msa0664270 | 0.852083 | 5.825205e-61 | -8.615850e-47 |
| Msa0404850 | Msa0664270 | 0.812232 | 4.702694e-51 | -8.615850e-47 |
| Msa0415910 | Msa0664270 | 0.804535 | 2.061694e-49 | -8.615850e-47 |
| Msa0426680 | Msa0664270 | 0.810839 | 9.439673e-51 | -8.615850e-47 |
| Msa0444170 | Msa0664270 | 0.839196 | 1.830655e-57 | -8.615850e-47 |
| Msa0450840 | Msa0664270 | 0.817413 | 3.340699e-52 | -8.615850e-47 |
| Msa0240460 | Msa0664270 | 0.801392 | 9.202074e-49 | -8.615850e-47 |
| Msa0264960 | Msa0664270 | 0.802984 | 4.328564e-49 | -8.615850e-47 |
| Msa0271740 | Msa0664270 | 0.800862 | 1.180719e-48 | -8.615850e-47 |
| Msa0303010 | Msa0664270 | 0.804575 | 2.023030e-49 | -8.615850e-47 |
| Msa0350070 | Msa0664270 | 0.830744 | 2.471105e-55 | -8.615850e-47 |
| Msa0483160 | Msa0664270 | 0.805940 | 1.047424e-49 | -8.615850e-47 |
| Msa0491730 | Msa0664270 | 0.842741 | 2.148054e-58 | -8.615850e-47 |
| Msa0508000 | Msa0664270 | 0.804900 | 1.729798e-49 | -8.615850e-47 |
| Msa0553310 | Msa0664270 | 0.817622 | 2.996818e-52 | -8.615850e-47 |
| Msa0575960 | Msa0664270 | 0.811038 | 8.549797e-51 | -8.615850e-47 |
| Msa0586250 | Msa0664270 | 0.919209 | 5.989162e-87 | -8.615850e-47 |
| Msa0588020 | Msa0664270 | 0.811445 | 6.977569e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664270 | MtrunA17_Chr4g0002211 | 92.800 | 250 | 18 | 0 | 1 | 250 | 1 | 250 | 5.76e-162 | 448 |
| Msa0664270 | MtrunA17_Chr4g0024021 | 50.000 | 66 | 33 | 0 | 8 | 73 | 36 | 101 | 1.68e-15 | 70.9 |
| Msa0664270 | MtrunA17_Chr2g0322971 | 50.820 | 61 | 30 | 0 | 6 | 66 | 29 | 89 | 2.57e-15 | 70.5 |
| Msa0664270 | MtrunA17_Chr2g0323271 | 50.000 | 66 | 33 | 0 | 6 | 71 | 3 | 68 | 2.57e-12 | 64.7 |
| Msa0664270 | MtrunA17_Chr2g0280901 | 48.276 | 58 | 30 | 0 | 6 | 63 | 3 | 60 | 3.37e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664270 | AT3G21150.1 | 30.769 | 234 | 132 | 3 | 8 | 241 | 5 | 208 | 1.38e-25 | 100 |
| Msa0664270 | AT4G27310.1 | 47.500 | 80 | 41 | 1 | 6 | 85 | 3 | 81 | 1.84e-15 | 73.6 |
| Msa0664270 | AT3G21890.1 | 51.613 | 62 | 30 | 0 | 7 | 68 | 30 | 91 | 5.09e-15 | 69.7 |
| Msa0664270 | AT5G54470.1 | 52.000 | 75 | 35 | 1 | 3 | 77 | 1 | 74 | 6.38e-15 | 72.0 |
| Msa0664270 | AT4G15248.1 | 44.156 | 77 | 43 | 0 | 8 | 84 | 32 | 108 | 1.38e-14 | 68.6 |
Find 63 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGGTTGGAGAAAATATC+AGG | 0.264188 | 4_4:-3318412 | Msa0664270:CDS |
| TTCGGTGAAACCGTCGCATT+TGG | 0.282536 | 4_4:+3318897 | None:intergenic |
| GGTGCCAGCTAAGCTGATTT+TGG | 0.291167 | 4_4:-3318389 | Msa0664270:CDS |
| CGCACCCTTCTTGCAATTCA+AGG | 0.341656 | 4_4:+3318329 | None:intergenic |
| CCGATTCCGCCTTTCTCTGC+CGG | 0.365012 | 4_4:-3318987 | Msa0664270:CDS |
| TTGTTATTGTTCTCCGGTGC+CGG | 0.383054 | 4_4:+3318673 | None:intergenic |
| TGGCTGCTGCGACGTCGTTT+TGG | 0.398824 | 4_4:-3318486 | Msa0664270:CDS |
| TTCCTCTTGTTATTGTTCTC+CGG | 0.408628 | 4_4:+3318667 | None:intergenic |
| AACAAGAGGAAGAAGATGAT+TGG | 0.414945 | 4_4:-3318655 | Msa0664270:CDS |
| AGCTGCGACGACGCCGTTCA+CGG | 0.441391 | 4_4:-3318964 | Msa0664270:CDS |
| CGGAGGAGATATTTGCGAAA+TGG | 0.441862 | 4_4:-3318609 | Msa0664270:CDS |
| CCACGTGTCGAAATTTGATA+AGG | 0.443341 | 4_4:-3318429 | Msa0664270:CDS |
| ACAAGAGGAAGAAGATGATT+GGG | 0.446433 | 4_4:-3318654 | Msa0664270:CDS |
| CCGGCAGAGAAAGGCGGAAT+CGG | 0.453844 | 4_4:+3318987 | None:intergenic |
| TTCCGGTGAGCAAGAGCGGC+AGG | 0.464761 | 4_4:+3318831 | None:intergenic |
| GAACGGCGTCGTCGCAGCTC+CGG | 0.476153 | 4_4:+3318968 | None:intergenic |
| GTCGCAGCAGCCACCTTCAC+CGG | 0.482296 | 4_4:+3318496 | None:intergenic |
| AGTGCCGGAGATATGAATTT+CGG | 0.485587 | 4_4:+3318879 | None:intergenic |
| GAGAACGTGGAAGTTACTTC+CGG | 0.494776 | 4_4:-3318515 | Msa0664270:CDS |
| GTCGCAGCTCCGGCAGAGAA+AGG | 0.496029 | 4_4:+3318978 | None:intergenic |
| GTGGCCAAAATCAGCTTAGC+TGG | 0.499961 | 4_4:+3318385 | None:intergenic |
| TTCACCGAAATTCATATCTC+CGG | 0.509514 | 4_4:-3318883 | Msa0664270:CDS |
| GCCACACGATCACCGTTCAC+CGG | 0.535889 | 4_4:+3318562 | None:intergenic |
| AACCTGCCGCTCTTGCTCAC+CGG | 0.536391 | 4_4:-3318833 | Msa0664270:CDS |
| GTGTCGAAATTTGATAAGGT+TGG | 0.536660 | 4_4:-3318425 | Msa0664270:CDS |
| CGATGATACATCTCCGGCAC+CGG | 0.539008 | 4_4:-3318686 | Msa0664270:CDS |
| GAACGGTGATCGTGTGGCGG+TGG | 0.541705 | 4_4:-3318557 | Msa0664270:CDS |
| TCGTGTGGCGGTGGAAGCTA+TGG | 0.543504 | 4_4:-3318548 | Msa0664270:CDS |
| CAGAGAAAGGCGGAATCGGA+AGG | 0.554491 | 4_4:+3318991 | None:intergenic |
| ACGGTGGTGTAGTGTAGTGC+CGG | 0.554858 | 4_4:+3318864 | None:intergenic |
| AACACCTTGAATTGCAAGAA+GGG | 0.556767 | 4_4:-3318333 | Msa0664270:CDS |
| TCACCGGAAAATCATTCCTC+CGG | 0.557681 | 4_4:-3318817 | Msa0664270:CDS |
| TGAAAGTGTTGGATCGGTGG+CGG | 0.559970 | 4_4:-3318629 | Msa0664270:CDS |
| AAGTGTTGGATCGGTGGCGG+AGG | 0.560614 | 4_4:-3318626 | Msa0664270:CDS |
| AGATTGAGAACTCGCCTCAC+CGG | 0.561454 | 4_4:+3318798 | None:intergenic |
| GACTGAAAGTGTTGGATCGG+TGG | 0.563595 | 4_4:-3318632 | Msa0664270:CDS |
| TAAGGTTGGAGAAAATATCA+GGG | 0.568817 | 4_4:-3318411 | Msa0664270:CDS |
| TCCGGTGAACGGTGATCGTG+TGG | 0.570131 | 4_4:-3318563 | Msa0664270:CDS |
| CAACACCTTGAATTGCAAGA+AGG | 0.572050 | 4_4:-3318334 | Msa0664270:CDS |
| GTGGAAGTTACTTCCGGTGA+AGG | 0.577957 | 4_4:-3318509 | Msa0664270:CDS |
| ATGATTGGGACTGAAAGTGT+TGG | 0.593930 | 4_4:-3318640 | Msa0664270:CDS |
| GAAGTTACTTCCGGTGAAGG+TGG | 0.596707 | 4_4:-3318506 | Msa0664270:CDS |
| GAGGAAGTTAGCGCCGTGAA+CGG | 0.601829 | 4_4:+3318951 | None:intergenic |
| ATCTTGTGCTCCAAATGCGA+CGG | 0.602290 | 4_4:-3318907 | Msa0664270:CDS |
| AGCGGCAGGTTGATGAGAGA+CGG | 0.602586 | 4_4:+3318845 | None:intergenic |
| CGGAGATGTATCATCGGTAA+CGG | 0.606238 | 4_4:+3318693 | None:intergenic |
| CCTTATCAAATTTCGACACG+TGG | 0.609695 | 4_4:+3318429 | None:intergenic |
| CGTTACCGATGATACATCTC+CGG | 0.613031 | 4_4:-3318692 | Msa0664270:CDS |
| CACCGGAGAACAATAACAAG+AGG | 0.613856 | 4_4:-3318669 | Msa0664270:CDS |
| TGGGACTGAAAGTGTTGGAT+CGG | 0.630097 | 4_4:-3318635 | Msa0664270:CDS |
| ATTTGGAGCACAAGATGTGA+CGG | 0.631824 | 4_4:+3318914 | None:intergenic |
| GCAGCTCCGGCAGAGAAAGG+CGG | 0.638220 | 4_4:+3318981 | None:intergenic |
| TGTGGCGGTGGAAGCTATGG+CGG | 0.643579 | 4_4:-3318545 | Msa0664270:CDS |
| TTGAGAACTCGCCTCACCGG+AGG | 0.643923 | 4_4:+3318801 | None:intergenic |
| CGGTGCCGGAGATGTATCAT+CGG | 0.645343 | 4_4:+3318687 | None:intergenic |
| GGTGAACGGTGATCGTGTGG+CGG | 0.678941 | 4_4:-3318560 | Msa0664270:CDS |
| GGAAAATCATTCCTCCGGTG+AGG | 0.685941 | 4_4:-3318812 | Msa0664270:CDS |
| ACGTGCGAGTTTCACATGTG+TGG | 0.686351 | 4_4:+3318366 | None:intergenic |
| GGCAGGTTGATGAGAGACGG+TGG | 0.691500 | 4_4:+3318848 | None:intergenic |
| TGGCGGTGTGTATGAGAACG+TGG | 0.692845 | 4_4:-3318528 | Msa0664270:CDS |
| AAGGTTGGAGAAAATATCAG+GGG | 0.705696 | 4_4:-3318410 | Msa0664270:CDS |
| TGGAGCACAAGATGTGACGG+AGG | 0.724489 | 4_4:+3318917 | None:intergenic |
| GACGGAGGTGACGAGCGACG+AGG | 0.727759 | 4_4:+3318932 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAGTTAGAGTTAGATTTTC+CGG | - | chr4_4:3318785-3318804 | Msa0664270:CDS | 30.0% |
| ATAAGGTTGGAGAAAATATC+AGG | - | chr4_4:3318954-3318973 | Msa0664270:CDS | 30.0% | |
| TAAGGTTGGAGAAAATATCA+GGG | - | chr4_4:3318955-3318974 | Msa0664270:CDS | 30.0% | |
| ! | AGAGTTAGAGTTAGATTTTC+CGG | - | chr4_4:3318785-3318804 | Msa0664270:CDS | 30.0% |
| ATAAGGTTGGAGAAAATATC+AGG | - | chr4_4:3318954-3318973 | Msa0664270:CDS | 30.0% | |
| TAAGGTTGGAGAAAATATCA+GGG | - | chr4_4:3318955-3318974 | Msa0664270:CDS | 30.0% | |
| TTCACCGAAATTCATATCTC+CGG | - | chr4_4:3318483-3318502 | Msa0664270:CDS | 35.0% | |
| !! | TTCCTCTTGTTATTGTTCTC+CGG | + | chr4_4:3318702-3318721 | None:intergenic | 35.0% |
| AACAAGAGGAAGAAGATGAT+TGG | - | chr4_4:3318711-3318730 | Msa0664270:CDS | 35.0% | |
| ACAAGAGGAAGAAGATGATT+GGG | - | chr4_4:3318712-3318731 | Msa0664270:CDS | 35.0% | |
| GTGTCGAAATTTGATAAGGT+TGG | - | chr4_4:3318941-3318960 | Msa0664270:CDS | 35.0% | |
| AAGGTTGGAGAAAATATCAG+GGG | - | chr4_4:3318956-3318975 | Msa0664270:CDS | 35.0% | |
| AACACCTTGAATTGCAAGAA+GGG | - | chr4_4:3319033-3319052 | Msa0664270:CDS | 35.0% | |
| TTCACCGAAATTCATATCTC+CGG | - | chr4_4:3318483-3318502 | Msa0664270:CDS | 35.0% | |
| !! | TTCCTCTTGTTATTGTTCTC+CGG | + | chr4_4:3318702-3318721 | None:intergenic | 35.0% |
| AACAAGAGGAAGAAGATGAT+TGG | - | chr4_4:3318711-3318730 | Msa0664270:CDS | 35.0% | |
| ACAAGAGGAAGAAGATGATT+GGG | - | chr4_4:3318712-3318731 | Msa0664270:CDS | 35.0% | |
| GTGTCGAAATTTGATAAGGT+TGG | - | chr4_4:3318941-3318960 | Msa0664270:CDS | 35.0% | |
| AAGGTTGGAGAAAATATCAG+GGG | - | chr4_4:3318956-3318975 | Msa0664270:CDS | 35.0% | |
| AACACCTTGAATTGCAAGAA+GGG | - | chr4_4:3319033-3319052 | Msa0664270:CDS | 35.0% | |
| ! | ATTTGGAGCACAAGATGTGA+CGG | + | chr4_4:3318455-3318474 | None:intergenic | 40.0% |
| ! | AGTGCCGGAGATATGAATTT+CGG | + | chr4_4:3318490-3318509 | None:intergenic | 40.0% |
| ! | ATGATTGGGACTGAAAGTGT+TGG | - | chr4_4:3318726-3318745 | Msa0664270:CDS | 40.0% |
| ! | GAGTTAGATTTTCCGGTGAA+CGG | - | chr4_4:3318792-3318811 | Msa0664270:CDS | 40.0% |
| ! | TGGTTGGGGTTAAGATTTTG+TGG | - | chr4_4:3318900-3318919 | Msa0664270:CDS | 40.0% |
| ! | GGTTGGGGTTAAGATTTTGT+GGG | - | chr4_4:3318901-3318920 | Msa0664270:CDS | 40.0% |
| ! | GTTGGGGTTAAGATTTTGTG+GGG | - | chr4_4:3318902-3318921 | Msa0664270:CDS | 40.0% |
| CCTTATCAAATTTCGACACG+TGG | + | chr4_4:3318940-3318959 | None:intergenic | 40.0% | |
| CCACGTGTCGAAATTTGATA+AGG | - | chr4_4:3318937-3318956 | Msa0664270:CDS | 40.0% | |
| CAACACCTTGAATTGCAAGA+AGG | - | chr4_4:3319032-3319051 | Msa0664270:CDS | 40.0% | |
| ! | ATTTGGAGCACAAGATGTGA+CGG | + | chr4_4:3318455-3318474 | None:intergenic | 40.0% |
| ! | AGTGCCGGAGATATGAATTT+CGG | + | chr4_4:3318490-3318509 | None:intergenic | 40.0% |
| ! | ATGATTGGGACTGAAAGTGT+TGG | - | chr4_4:3318726-3318745 | Msa0664270:CDS | 40.0% |
| ! | GAGTTAGATTTTCCGGTGAA+CGG | - | chr4_4:3318792-3318811 | Msa0664270:CDS | 40.0% |
| ! | TGGTTGGGGTTAAGATTTTG+TGG | - | chr4_4:3318900-3318919 | Msa0664270:CDS | 40.0% |
| ! | GGTTGGGGTTAAGATTTTGT+GGG | - | chr4_4:3318901-3318920 | Msa0664270:CDS | 40.0% |
| ! | GTTGGGGTTAAGATTTTGTG+GGG | - | chr4_4:3318902-3318921 | Msa0664270:CDS | 40.0% |
| CCTTATCAAATTTCGACACG+TGG | + | chr4_4:3318940-3318959 | None:intergenic | 40.0% | |
| CCACGTGTCGAAATTTGATA+AGG | - | chr4_4:3318937-3318956 | Msa0664270:CDS | 40.0% | |
| CAACACCTTGAATTGCAAGA+AGG | - | chr4_4:3319032-3319051 | Msa0664270:CDS | 40.0% | |
| ATCTTGTGCTCCAAATGCGA+CGG | - | chr4_4:3318459-3318478 | Msa0664270:CDS | 45.0% | |
| TCACCGGAAAATCATTCCTC+CGG | - | chr4_4:3318549-3318568 | Msa0664270:CDS | 45.0% | |
| ! | TCACCGGAGGAATGATTTTC+CGG | + | chr4_4:3318555-3318574 | None:intergenic | 45.0% |
| CGGAGATGTATCATCGGTAA+CGG | + | chr4_4:3318676-3318695 | None:intergenic | 45.0% | |
| CGTTACCGATGATACATCTC+CGG | - | chr4_4:3318674-3318693 | Msa0664270:CDS | 45.0% | |
| ! | TTGTTATTGTTCTCCGGTGC+CGG | + | chr4_4:3318696-3318715 | None:intergenic | 45.0% |
| CACCGGAGAACAATAACAAG+AGG | - | chr4_4:3318697-3318716 | Msa0664270:CDS | 45.0% | |
| !! | TGGGACTGAAAGTGTTGGAT+CGG | - | chr4_4:3318731-3318750 | Msa0664270:CDS | 45.0% |
| CGGAGGAGATATTTGCGAAA+TGG | - | chr4_4:3318757-3318776 | Msa0664270:CDS | 45.0% | |
| GAGAACGTGGAAGTTACTTC+CGG | - | chr4_4:3318851-3318870 | Msa0664270:CDS | 45.0% | |
| ATCTTGTGCTCCAAATGCGA+CGG | - | chr4_4:3318459-3318478 | Msa0664270:CDS | 45.0% | |
| TCACCGGAAAATCATTCCTC+CGG | - | chr4_4:3318549-3318568 | Msa0664270:CDS | 45.0% | |
| ! | TCACCGGAGGAATGATTTTC+CGG | + | chr4_4:3318555-3318574 | None:intergenic | 45.0% |
| CGGAGATGTATCATCGGTAA+CGG | + | chr4_4:3318676-3318695 | None:intergenic | 45.0% | |
| CGTTACCGATGATACATCTC+CGG | - | chr4_4:3318674-3318693 | Msa0664270:CDS | 45.0% | |
| ! | TTGTTATTGTTCTCCGGTGC+CGG | + | chr4_4:3318696-3318715 | None:intergenic | 45.0% |
| CACCGGAGAACAATAACAAG+AGG | - | chr4_4:3318697-3318716 | Msa0664270:CDS | 45.0% | |
| !! | TGGGACTGAAAGTGTTGGAT+CGG | - | chr4_4:3318731-3318750 | Msa0664270:CDS | 45.0% |
| CGGAGGAGATATTTGCGAAA+TGG | - | chr4_4:3318757-3318776 | Msa0664270:CDS | 45.0% | |
| GAGAACGTGGAAGTTACTTC+CGG | - | chr4_4:3318851-3318870 | Msa0664270:CDS | 45.0% | |
| TTCGGTGAAACCGTCGCATT+TGG | + | chr4_4:3318472-3318491 | None:intergenic | 50.0% | |
| ! | GATTTTCCGGTGAGCAAGAG+CGG | + | chr4_4:3318542-3318561 | None:intergenic | 50.0% |
| GGAAAATCATTCCTCCGGTG+AGG | - | chr4_4:3318554-3318573 | Msa0664270:CDS | 50.0% | |
| AGATTGAGAACTCGCCTCAC+CGG | + | chr4_4:3318571-3318590 | None:intergenic | 50.0% | |
| !! | GACTGAAAGTGTTGGATCGG+TGG | - | chr4_4:3318734-3318753 | Msa0664270:CDS | 50.0% |
| !! | TGAAAGTGTTGGATCGGTGG+CGG | - | chr4_4:3318737-3318756 | Msa0664270:CDS | 50.0% |
| GTGGAAGTTACTTCCGGTGA+AGG | - | chr4_4:3318857-3318876 | Msa0664270:CDS | 50.0% | |
| GAAGTTACTTCCGGTGAAGG+TGG | - | chr4_4:3318860-3318879 | Msa0664270:CDS | 50.0% | |
| !! | GGTGCCAGCTAAGCTGATTT+TGG | - | chr4_4:3318977-3318996 | Msa0664270:CDS | 50.0% |
| GTGGCCAAAATCAGCTTAGC+TGG | + | chr4_4:3318984-3319003 | None:intergenic | 50.0% | |
| ACGTGCGAGTTTCACATGTG+TGG | + | chr4_4:3319003-3319022 | None:intergenic | 50.0% | |
| CGCACCCTTCTTGCAATTCA+AGG | + | chr4_4:3319040-3319059 | None:intergenic | 50.0% | |
| TTCGGTGAAACCGTCGCATT+TGG | + | chr4_4:3318472-3318491 | None:intergenic | 50.0% | |
| ! | GATTTTCCGGTGAGCAAGAG+CGG | + | chr4_4:3318542-3318561 | None:intergenic | 50.0% |
| GGAAAATCATTCCTCCGGTG+AGG | - | chr4_4:3318554-3318573 | Msa0664270:CDS | 50.0% | |
| AGATTGAGAACTCGCCTCAC+CGG | + | chr4_4:3318571-3318590 | None:intergenic | 50.0% | |
| !! | GACTGAAAGTGTTGGATCGG+TGG | - | chr4_4:3318734-3318753 | Msa0664270:CDS | 50.0% |
| !! | TGAAAGTGTTGGATCGGTGG+CGG | - | chr4_4:3318737-3318756 | Msa0664270:CDS | 50.0% |
| GTGGAAGTTACTTCCGGTGA+AGG | - | chr4_4:3318857-3318876 | Msa0664270:CDS | 50.0% | |
| GAAGTTACTTCCGGTGAAGG+TGG | - | chr4_4:3318860-3318879 | Msa0664270:CDS | 50.0% | |
| !! | GGTGCCAGCTAAGCTGATTT+TGG | - | chr4_4:3318977-3318996 | Msa0664270:CDS | 50.0% |
| GTGGCCAAAATCAGCTTAGC+TGG | + | chr4_4:3318984-3319003 | None:intergenic | 50.0% | |
| ACGTGCGAGTTTCACATGTG+TGG | + | chr4_4:3319003-3319022 | None:intergenic | 50.0% | |
| CGCACCCTTCTTGCAATTCA+AGG | + | chr4_4:3319040-3319059 | None:intergenic | 50.0% | |
| CAGAGAAAGGCGGAATCGGA+AGG | + | chr4_4:3318378-3318397 | None:intergenic | 55.0% | |
| GAGGAAGTTAGCGCCGTGAA+CGG | + | chr4_4:3318418-3318437 | None:intergenic | 55.0% | |
| TGGAGCACAAGATGTGACGG+AGG | + | chr4_4:3318452-3318471 | None:intergenic | 55.0% | |
| ACGGTGGTGTAGTGTAGTGC+CGG | + | chr4_4:3318505-3318524 | None:intergenic | 55.0% | |
| !! | AGCGGCAGGTTGATGAGAGA+CGG | + | chr4_4:3318524-3318543 | None:intergenic | 55.0% |
| ! | CGGTGCCGGAGATGTATCAT+CGG | + | chr4_4:3318682-3318701 | None:intergenic | 55.0% |
| CGATGATACATCTCCGGCAC+CGG | - | chr4_4:3318680-3318699 | Msa0664270:CDS | 55.0% | |
| TGGCGGTGTGTATGAGAACG+TGG | - | chr4_4:3318838-3318857 | Msa0664270:CDS | 55.0% | |
| !! | TGCTGCGACGTCGTTTTGGT+TGG | - | chr4_4:3318884-3318903 | Msa0664270:CDS | 55.0% |
| !!! | GCTGCGACGTCGTTTTGGTT+GGG | - | chr4_4:3318885-3318904 | Msa0664270:CDS | 55.0% |
| !!! | CTGCGACGTCGTTTTGGTTG+GGG | - | chr4_4:3318886-3318905 | Msa0664270:CDS | 55.0% |
| CAGAGAAAGGCGGAATCGGA+AGG | + | chr4_4:3318378-3318397 | None:intergenic | 55.0% | |
| GAGGAAGTTAGCGCCGTGAA+CGG | + | chr4_4:3318418-3318437 | None:intergenic | 55.0% | |
| TGGAGCACAAGATGTGACGG+AGG | + | chr4_4:3318452-3318471 | None:intergenic | 55.0% | |
| ACGGTGGTGTAGTGTAGTGC+CGG | + | chr4_4:3318505-3318524 | None:intergenic | 55.0% | |
| !! | AGCGGCAGGTTGATGAGAGA+CGG | + | chr4_4:3318524-3318543 | None:intergenic | 55.0% |
| ! | CGGTGCCGGAGATGTATCAT+CGG | + | chr4_4:3318682-3318701 | None:intergenic | 55.0% |
| CGATGATACATCTCCGGCAC+CGG | - | chr4_4:3318680-3318699 | Msa0664270:CDS | 55.0% | |
| TGGCGGTGTGTATGAGAACG+TGG | - | chr4_4:3318838-3318857 | Msa0664270:CDS | 55.0% | |
| !! | TGCTGCGACGTCGTTTTGGT+TGG | - | chr4_4:3318884-3318903 | Msa0664270:CDS | 55.0% |
| !!! | GCTGCGACGTCGTTTTGGTT+GGG | - | chr4_4:3318885-3318904 | Msa0664270:CDS | 55.0% |
| !!! | CTGCGACGTCGTTTTGGTTG+GGG | - | chr4_4:3318886-3318905 | Msa0664270:CDS | 55.0% |
| CCGGCAGAGAAAGGCGGAAT+CGG | + | chr4_4:3318382-3318401 | None:intergenic | 60.0% | |
| CCGATTCCGCCTTTCTCTGC+CGG | - | chr4_4:3318379-3318398 | Msa0664270:CDS | 60.0% | |
| !! | GGCAGGTTGATGAGAGACGG+TGG | + | chr4_4:3318521-3318540 | None:intergenic | 60.0% |
| AACCTGCCGCTCTTGCTCAC+CGG | - | chr4_4:3318533-3318552 | Msa0664270:CDS | 60.0% | |
| TTGAGAACTCGCCTCACCGG+AGG | + | chr4_4:3318568-3318587 | None:intergenic | 60.0% | |
| !! | AAGTGTTGGATCGGTGGCGG+AGG | - | chr4_4:3318740-3318759 | Msa0664270:CDS | 60.0% |
| TCCGGTGAACGGTGATCGTG+TGG | - | chr4_4:3318803-3318822 | Msa0664270:CDS | 60.0% | |
| GCCACACGATCACCGTTCAC+CGG | + | chr4_4:3318807-3318826 | None:intergenic | 60.0% | |
| GGTGAACGGTGATCGTGTGG+CGG | - | chr4_4:3318806-3318825 | Msa0664270:CDS | 60.0% | |
| TCGTGTGGCGGTGGAAGCTA+TGG | - | chr4_4:3318818-3318837 | Msa0664270:CDS | 60.0% | |
| TGTGGCGGTGGAAGCTATGG+CGG | - | chr4_4:3318821-3318840 | Msa0664270:CDS | 60.0% | |
| ! | TGGCTGCTGCGACGTCGTTT+TGG | - | chr4_4:3318880-3318899 | Msa0664270:CDS | 60.0% |
| CCGGCAGAGAAAGGCGGAAT+CGG | + | chr4_4:3318382-3318401 | None:intergenic | 60.0% | |
| CCGATTCCGCCTTTCTCTGC+CGG | - | chr4_4:3318379-3318398 | Msa0664270:CDS | 60.0% | |
| !! | GGCAGGTTGATGAGAGACGG+TGG | + | chr4_4:3318521-3318540 | None:intergenic | 60.0% |
| AACCTGCCGCTCTTGCTCAC+CGG | - | chr4_4:3318533-3318552 | Msa0664270:CDS | 60.0% | |
| TTGAGAACTCGCCTCACCGG+AGG | + | chr4_4:3318568-3318587 | None:intergenic | 60.0% | |
| !! | AAGTGTTGGATCGGTGGCGG+AGG | - | chr4_4:3318740-3318759 | Msa0664270:CDS | 60.0% |
| TCCGGTGAACGGTGATCGTG+TGG | - | chr4_4:3318803-3318822 | Msa0664270:CDS | 60.0% | |
| GCCACACGATCACCGTTCAC+CGG | + | chr4_4:3318807-3318826 | None:intergenic | 60.0% | |
| GGTGAACGGTGATCGTGTGG+CGG | - | chr4_4:3318806-3318825 | Msa0664270:CDS | 60.0% | |
| TCGTGTGGCGGTGGAAGCTA+TGG | - | chr4_4:3318818-3318837 | Msa0664270:CDS | 60.0% | |
| TGTGGCGGTGGAAGCTATGG+CGG | - | chr4_4:3318821-3318840 | Msa0664270:CDS | 60.0% | |
| ! | TGGCTGCTGCGACGTCGTTT+TGG | - | chr4_4:3318880-3318899 | Msa0664270:CDS | 60.0% |
| GCAGCTCCGGCAGAGAAAGG+CGG | + | chr4_4:3318388-3318407 | None:intergenic | 65.0% | |
| GTCGCAGCTCCGGCAGAGAA+AGG | + | chr4_4:3318391-3318410 | None:intergenic | 65.0% | |
| AGCTGCGACGACGCCGTTCA+CGG | - | chr4_4:3318402-3318421 | Msa0664270:CDS | 65.0% | |
| TTCCGGTGAGCAAGAGCGGC+AGG | + | chr4_4:3318538-3318557 | None:intergenic | 65.0% | |
| GAACGGTGATCGTGTGGCGG+TGG | - | chr4_4:3318809-3318828 | Msa0664270:CDS | 65.0% | |
| GTCGCAGCAGCCACCTTCAC+CGG | + | chr4_4:3318873-3318892 | None:intergenic | 65.0% | |
| GCAGCTCCGGCAGAGAAAGG+CGG | + | chr4_4:3318388-3318407 | None:intergenic | 65.0% | |
| GTCGCAGCTCCGGCAGAGAA+AGG | + | chr4_4:3318391-3318410 | None:intergenic | 65.0% | |
| AGCTGCGACGACGCCGTTCA+CGG | - | chr4_4:3318402-3318421 | Msa0664270:CDS | 65.0% | |
| TTCCGGTGAGCAAGAGCGGC+AGG | + | chr4_4:3318538-3318557 | None:intergenic | 65.0% | |
| GAACGGTGATCGTGTGGCGG+TGG | - | chr4_4:3318809-3318828 | Msa0664270:CDS | 65.0% | |
| GTCGCAGCAGCCACCTTCAC+CGG | + | chr4_4:3318873-3318892 | None:intergenic | 65.0% | |
| GAACGGCGTCGTCGCAGCTC+CGG | + | chr4_4:3318401-3318420 | None:intergenic | 70.0% | |
| GACGGAGGTGACGAGCGACG+AGG | + | chr4_4:3318437-3318456 | None:intergenic | 70.0% | |
| GAACGGCGTCGTCGCAGCTC+CGG | + | chr4_4:3318401-3318420 | None:intergenic | 70.0% | |
| GACGGAGGTGACGAGCGACG+AGG | + | chr4_4:3318437-3318456 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3318318 | 3319070 | 3318318 | ID=Msa0664270;Name=Msa0664270 |
| chr4_4 | mRNA | 3318318 | 3319070 | 3318318 | ID=Msa0664270-mRNA-1;Parent=Msa0664270;Name=Msa0664270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|250 |
| chr4_4 | exon | 3318318 | 3319070 | 3318318 | ID=Msa0664270-mRNA-1:exon:1041;Parent=Msa0664270-mRNA-1 |
| chr4_4 | CDS | 3318318 | 3319070 | 3318318 | ID=Msa0664270-mRNA-1:cds;Parent=Msa0664270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
