Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238090 | XP_013462736.1 | 89.130 | 506 | 39 | 6 | 1 | 502 | 1 | 494 | 8.97e-172 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238090 | sp|Q9M8K5|HIP32_ARATH | 50.554 | 271 | 98 | 8 | 1 | 252 | 1 | 254 | 1.11e-44 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238090 | A0A072V529 | 89.130 | 506 | 39 | 6 | 1 | 502 | 1 | 494 | 4.28e-172 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196190 | Msa0238090 | 0.901870 | 1.728782e-78 | -8.615850e-47 |
| Msa0238090 | Msa0275070 | 0.813474 | 2.512895e-51 | -8.615850e-47 |
| Msa0238090 | Msa0275080 | 0.913986 | 3.254868e-84 | -8.615850e-47 |
| Msa0238090 | Msa0315980 | 0.902159 | 1.288271e-78 | -8.615850e-47 |
| Msa0238090 | Msa0631250 | 0.815063 | 1.120150e-51 | -8.615850e-47 |
| Msa0238090 | Msa0867060 | 0.803656 | 3.141528e-49 | -8.615850e-47 |
| Msa0238090 | Msa1024180 | 0.821420 | 4.075940e-53 | -8.615850e-47 |
| Msa0238090 | Msa1108020 | 0.808696 | 2.727440e-50 | -8.615850e-47 |
| Msa0238090 | Msa1216360 | 0.808648 | 2.793251e-50 | -8.615850e-47 |
| Msa0238090 | Msa1263010 | 0.836806 | 7.539977e-57 | -8.615850e-47 |
| Msa0238090 | Msa1266060 | 0.803393 | 3.562230e-49 | -8.615850e-47 |
| Msa0238090 | Msa1449930 | 0.811594 | 6.474030e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238090 | MtrunA17_Chr2g0287751 | 89.130 | 506 | 39 | 6 | 1 | 502 | 1 | 494 | 8.25e-176 | 503 |
| Msa0238090 | MtrunA17_Chr2g0287741 | 71.630 | 497 | 109 | 8 | 10 | 502 | 15 | 483 | 4.97e-131 | 391 |
| Msa0238090 | MtrunA17_Chr4g0065651 | 53.623 | 552 | 166 | 20 | 1 | 502 | 1 | 512 | 1.26e-56 | 196 |
| Msa0238090 | MtrunA17_Chr4g0065621 | 70.466 | 193 | 45 | 6 | 1 | 189 | 1 | 185 | 1.06e-48 | 172 |
| Msa0238090 | MtrunA17_Chr0c22g0493881 | 71.354 | 192 | 45 | 5 | 1 | 189 | 1 | 185 | 3.31e-48 | 170 |
| Msa0238090 | MtrunA17_Chr1g0191671 | 48.990 | 198 | 58 | 5 | 1 | 196 | 1 | 157 | 2.04e-35 | 139 |
| Msa0238090 | MtrunA17_Chr1g0208301 | 70.513 | 78 | 20 | 1 | 1 | 75 | 1 | 78 | 2.20e-30 | 122 |
| Msa0238090 | MtrunA17_Chr7g0269081 | 67.143 | 70 | 23 | 0 | 5 | 74 | 17 | 86 | 6.72e-25 | 104 |
| Msa0238090 | MtrunA17_Chr4g0067291 | 41.935 | 155 | 60 | 5 | 7 | 132 | 71 | 224 | 7.29e-24 | 102 |
| Msa0238090 | MtrunA17_Chr3g0111541 | 53.521 | 71 | 33 | 0 | 3 | 73 | 5 | 75 | 1.34e-19 | 87.4 |
| Msa0238090 | MtrunA17_Chr1g0192131 | 57.333 | 75 | 31 | 1 | 4 | 77 | 9 | 83 | 3.00e-19 | 89.7 |
| Msa0238090 | MtrunA17_Chr7g0272571 | 56.061 | 66 | 29 | 0 | 9 | 74 | 32 | 97 | 7.10e-19 | 88.2 |
| Msa0238090 | MtrunA17_Chr2g0296001 | 58.571 | 70 | 29 | 0 | 5 | 74 | 68 | 137 | 8.48e-17 | 82.0 |
| Msa0238090 | MtrunA17_Chr8g0382721 | 52.459 | 61 | 29 | 0 | 14 | 74 | 33 | 93 | 2.51e-14 | 70.5 |
| Msa0238090 | MtrunA17_Chr3g0124411 | 48.485 | 66 | 34 | 0 | 9 | 74 | 29 | 94 | 2.41e-13 | 67.8 |
| Msa0238090 | MtrunA17_Chr1g0198341 | 43.284 | 67 | 38 | 0 | 10 | 76 | 4 | 70 | 1.11e-12 | 63.5 |
| Msa0238090 | MtrunA17_Chr1g0160201 | 43.939 | 66 | 37 | 0 | 9 | 74 | 24 | 89 | 1.25e-12 | 65.5 |
| Msa0238090 | MtrunA17_Chr0c22g0493871 | 53.125 | 128 | 35 | 4 | 388 | 502 | 15 | 130 | 4.21e-12 | 63.5 |
| Msa0238090 | MtrunA17_Chr4g0065611 | 53.125 | 128 | 35 | 4 | 388 | 502 | 27 | 142 | 5.52e-12 | 63.5 |
| Msa0238090 | MtrunA17_Chr5g0407821 | 40.278 | 72 | 43 | 0 | 9 | 80 | 22 | 93 | 8.36e-12 | 63.2 |
| Msa0238090 | MtrunA17_Chr1g0189221 | 38.028 | 71 | 44 | 0 | 7 | 77 | 50 | 120 | 9.55e-12 | 63.9 |
| Msa0238090 | MtrunA17_Chr7g0218981 | 42.647 | 68 | 39 | 0 | 13 | 80 | 7 | 74 | 1.50e-11 | 62.0 |
| Msa0238090 | MtrunA17_Chr2g0325601 | 38.750 | 80 | 47 | 1 | 14 | 91 | 6 | 85 | 1.71e-11 | 62.0 |
| Msa0238090 | MtrunA17_Chr5g0404641 | 41.538 | 65 | 38 | 0 | 9 | 73 | 2 | 66 | 7.01e-11 | 60.8 |
| Msa0238090 | MtrunA17_Chr7g0251491 | 43.548 | 62 | 34 | 1 | 14 | 74 | 52 | 113 | 7.74e-11 | 60.8 |
| Msa0238090 | MtrunA17_Chr4g0050571 | 41.667 | 72 | 41 | 1 | 10 | 81 | 101 | 171 | 8.04e-11 | 60.8 |
| Msa0238090 | MtrunA17_Chr4g0036931 | 36.986 | 73 | 45 | 1 | 3 | 74 | 21 | 93 | 8.73e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238090 | AT3G06130.2 | 50.554 | 271 | 98 | 8 | 1 | 252 | 1 | 254 | 1.08e-46 | 166 |
| Msa0238090 | AT3G06130.1 | 50.554 | 271 | 98 | 8 | 1 | 252 | 1 | 254 | 1.13e-45 | 166 |
| Msa0238090 | AT5G19090.2 | 75.207 | 121 | 23 | 2 | 1 | 114 | 1 | 121 | 1.20e-45 | 166 |
| Msa0238090 | AT5G19090.2 | 47.222 | 144 | 41 | 5 | 391 | 502 | 325 | 465 | 4.57e-13 | 71.6 |
| Msa0238090 | AT5G19090.3 | 75.207 | 121 | 23 | 2 | 1 | 114 | 1 | 121 | 1.20e-45 | 166 |
| Msa0238090 | AT5G19090.3 | 47.222 | 144 | 41 | 5 | 391 | 502 | 325 | 465 | 4.57e-13 | 71.6 |
| Msa0238090 | AT5G19090.5 | 75.207 | 121 | 23 | 2 | 1 | 114 | 1 | 121 | 6.93e-45 | 166 |
| Msa0238090 | AT5G19090.4 | 75.207 | 121 | 23 | 2 | 1 | 114 | 1 | 121 | 6.93e-45 | 166 |
| Msa0238090 | AT5G19090.1 | 75.207 | 121 | 23 | 2 | 1 | 114 | 1 | 121 | 6.93e-45 | 166 |
| Msa0238090 | AT5G27690.1 | 59.036 | 83 | 34 | 0 | 5 | 87 | 25 | 107 | 3.12e-27 | 112 |
| Msa0238090 | AT3G05220.1 | 62.162 | 74 | 28 | 0 | 1 | 74 | 1 | 74 | 6.68e-26 | 111 |
| Msa0238090 | AT1G23000.1 | 60.256 | 78 | 28 | 1 | 1 | 75 | 1 | 78 | 3.00e-24 | 104 |
| Msa0238090 | AT1G23000.2 | 60.256 | 78 | 28 | 1 | 1 | 75 | 61 | 138 | 7.59e-24 | 103 |
| Msa0238090 | AT5G37860.1 | 56.923 | 65 | 28 | 0 | 9 | 73 | 9 | 73 | 1.88e-19 | 88.6 |
| Msa0238090 | AT1G56210.1 | 58.730 | 63 | 26 | 0 | 10 | 72 | 40 | 102 | 2.43e-17 | 84.0 |
| Msa0238090 | AT1G06330.1 | 48.438 | 64 | 33 | 0 | 14 | 77 | 6 | 69 | 6.40e-14 | 69.7 |
| Msa0238090 | AT1G66240.1 | 40.299 | 67 | 40 | 0 | 10 | 76 | 33 | 99 | 2.59e-12 | 63.9 |
| Msa0238090 | AT3G56891.1 | 42.188 | 64 | 37 | 0 | 14 | 77 | 20 | 83 | 5.24e-11 | 61.6 |
| Msa0238090 | AT1G71050.1 | 39.394 | 66 | 40 | 0 | 9 | 74 | 27 | 92 | 7.54e-11 | 60.8 |
Find 184 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGAAGGTGACCGTTTC+TGG | 0.126298 | 2_2:+11368538 | Msa0238090:CDS |
| CACCACCCTTTGGCTGATTT+TGG | 0.127985 | 2_2:-11368759 | None:intergenic |
| CTTCAAAATATTAAAGGATT+TGG | 0.214990 | 2_2:+11368853 | Msa0238090:CDS |
| GAACAACTTCAAAATATTAA+AGG | 0.221872 | 2_2:+11368847 | Msa0238090:CDS |
| TTTCCACCCATCATCATTTC+AGG | 0.251317 | 2_2:-11369663 | None:intergenic |
| ATCAAGAAGCTTGCAAAATC+AGG | 0.297726 | 2_2:+11368583 | Msa0238090:CDS |
| TTTGATTTGCAATGTTGTTC+TGG | 0.302117 | 2_2:-11368657 | None:intergenic |
| AGCTTCTTGATGAGAACATT+TGG | 0.309355 | 2_2:-11368571 | None:intergenic |
| CCTTGTTGGCCACCACCCTT+TGG | 0.315827 | 2_2:-11368769 | None:intergenic |
| CCTGTGCCTGTTCAAGTTCA+TGG | 0.322029 | 2_2:+11369186 | Msa0238090:CDS |
| AATCTATAAATTTAAAGTTC+AGG | 0.325842 | 2_2:-11370047 | None:intergenic |
| AGGGAAACATGCAGAACTTT+GGG | 0.332545 | 2_2:+11368603 | Msa0238090:CDS |
| CATGGCTTGGGTAGTGGAAA+TGG | 0.343773 | 2_2:+11369204 | Msa0238090:CDS |
| ATGTATTGTTGTTGTTGGTA+TGG | 0.358729 | 2_2:-11369687 | None:intergenic |
| TTATTGTTGTTGTTTGCCTT+TGG | 0.363526 | 2_2:-11368631 | None:intergenic |
| CCCATTGCTCCTCCTCCCAT+TGG | 0.369706 | 2_2:-11369525 | None:intergenic |
| GTTGGTGGAGGTGGTGGTAA+TGG | 0.372485 | 2_2:+11369357 | Msa0238090:CDS |
| AAAGGTGGTGGCGGTGGCGG+TGG | 0.381550 | 2_2:+11369240 | Msa0238090:CDS |
| GGATGACCACCACCCATGTT+TGG | 0.385549 | 2_2:-11369462 | None:intergenic |
| AAAATCTTGCAGAAGATTGA+TGG | 0.391119 | 2_2:+11367874 | Msa0238090:CDS |
| GGCGGTGTCAGTGGTGGATA+TGG | 0.391475 | 2_2:+11369636 | Msa0238090:CDS |
| GCCGGTAGGCCTTGAACAGC+TGG | 0.391650 | 2_2:-11369588 | None:intergenic |
| GGTGGAGGTGGTGGTAATGG+TGG | 0.396018 | 2_2:+11369360 | Msa0238090:CDS |
| CAGGGAAACATGCAGAACTT+TGG | 0.405425 | 2_2:+11368602 | Msa0238090:CDS |
| AAGAAAGGTGGTGGCGGTGG+CGG | 0.406323 | 2_2:+11369237 | Msa0238090:CDS |
| GTTCAAGGTATGATGAATAA+TGG | 0.407885 | 2_2:+11369435 | Msa0238090:CDS |
| AAGAAAGGTGGTGGCGGTAG+TGG | 0.411497 | 2_2:+11369156 | Msa0238090:CDS |
| CCTCCCATTTGACTCATCAT+TGG | 0.414296 | 2_2:-11369558 | None:intergenic |
| CGGCCATGTATTGTTGTTGT+TGG | 0.415164 | 2_2:-11369692 | None:intergenic |
| GAAACCATGTGGCCCACATT+AGG | 0.418420 | 2_2:-11369483 | None:intergenic |
| GGTGGAGGAGGGTAGCTATA+AGG | 0.420999 | 2_2:-11369819 | None:intergenic |
| GCTTCTTGATGAGAACATTT+GGG | 0.423822 | 2_2:-11368570 | None:intergenic |
| CAAGTTCATGGCTTGGGTAG+TGG | 0.426004 | 2_2:+11369198 | Msa0238090:CDS |
| CATGATGATGAATGCTCAAA+AGG | 0.426250 | 2_2:+11369107 | Msa0238090:CDS |
| GCCTGTTCAAGTTCATGGCT+TGG | 0.427596 | 2_2:+11369191 | Msa0238090:CDS |
| CCAAAGGGTGGTGGCCAACA+AGG | 0.428615 | 2_2:+11368769 | Msa0238090:CDS |
| TGTATTGTTGTTGTTGGTAT+GGG | 0.429195 | 2_2:-11369686 | None:intergenic |
| CCCAAGCCATGAACTTGAAC+AGG | 0.434887 | 2_2:-11369192 | None:intergenic |
| AATAAGAATGTTGGTGGAGG+TGG | 0.436250 | 2_2:+11369348 | Msa0238090:CDS |
| TCTGAAGGTGCCTCAATTCA+AGG | 0.437147 | 2_2:+11368879 | Msa0238090:CDS |
| CTCATTTCTTTCAAAACTCA+AGG | 0.440002 | 2_2:+11370181 | Msa0238090:three_prime_UTR |
| GAATAAGATGAAACTACCTA+TGG | 0.442921 | 2_2:+11369065 | Msa0238090:CDS |
| GGTGGTCTTGCATAAATCAT+TGG | 0.446862 | 2_2:-11369768 | None:intergenic |
| GGAAAGAAAGGTGGTGGCGG+TGG | 0.448783 | 2_2:+11369234 | Msa0238090:CDS |
| AACAAGGGGCAAAAGGGTCC+TGG | 0.452988 | 2_2:+11368730 | Msa0238090:CDS |
| ATGGGAGAAAGTGGTGTTCA+AGG | 0.452988 | 2_2:+11369420 | Msa0238090:CDS |
| TGAGGATGTTGTGGTGGAGG+AGG | 0.454691 | 2_2:-11369831 | None:intergenic |
| GAAGAAATGAGATGATGAAT+TGG | 0.455801 | 2_2:+11369910 | Msa0238090:exon |
| CCTGTTCAAGTTCATGGCTT+GGG | 0.456240 | 2_2:+11369192 | Msa0238090:CDS |
| GCTCAAAAGGGTGTTGGAAA+TGG | 0.456364 | 2_2:+11369120 | Msa0238090:CDS |
| AAAGGTGGTGGCGGTAGTGG+TGG | 0.456844 | 2_2:+11369159 | Msa0238090:CDS |
| ATCAAAGGGTTCTAACAAAG+AGG | 0.460794 | 2_2:-11367544 | None:intergenic |
| GTGGGATTCCAAATAACAAT+GGG | 0.461498 | 2_2:+11369379 | Msa0238090:CDS |
| TCTTGAGGATGTTGTGGTGG+AGG | 0.461952 | 2_2:-11369834 | None:intergenic |
| GGTGGTGGCGGTAGTGGTGG+AGG | 0.462865 | 2_2:+11369162 | Msa0238090:CDS |
| GCGATGAACGGCGGTGGAGG+AGG | 0.468951 | 2_2:+11369615 | Msa0238090:CDS |
| AGTGAGAAGATGAACAGAAA+GGG | 0.469058 | 2_2:-11367288 | None:intergenic |
| GTGGAGGTGGTGGTAATGGT+GGG | 0.469948 | 2_2:+11369361 | Msa0238090:CDS |
| GTTGGAAATGGCGGAGGCAA+TGG | 0.471383 | 2_2:+11369132 | Msa0238090:CDS |
| ATGTTCATGTCCTTGAATTG+AGG | 0.472918 | 2_2:-11368889 | None:intergenic |
| ATGCAAATTGACAATGGAAA+AGG | 0.473035 | 2_2:+11368688 | Msa0238090:CDS |
| CATGCCAATGATGAGTCAAA+TGG | 0.477210 | 2_2:+11369554 | Msa0238090:CDS |
| GCTGCGATGAACGGCGGTGG+AGG | 0.477384 | 2_2:+11369612 | Msa0238090:CDS |
| GGGTGGTGGTCATCCTAATG+TGG | 0.482164 | 2_2:+11369470 | Msa0238090:CDS |
| GGAGGAGGCGGTGTCAGTGG+TGG | 0.483447 | 2_2:+11369630 | Msa0238090:CDS |
| GGTAACATGCCAGCTGTTCA+AGG | 0.483877 | 2_2:+11369579 | Msa0238090:CDS |
| GAGGATGTTGTGGTGGAGGA+GGG | 0.486475 | 2_2:-11369830 | None:intergenic |
| ATGAACGGCGGTGGAGGAGG+CGG | 0.489060 | 2_2:+11369618 | Msa0238090:CDS |
| TCAACAACAGTTACAACAGC+TGG | 0.491026 | 2_2:+11368825 | Msa0238090:CDS |
| TGGGTCCACATTTCCAGAAA+CGG | 0.492449 | 2_2:-11368551 | None:intergenic |
| AATCTATCATTTCCACCAGC+TGG | 0.494927 | 2_2:-11369741 | None:intergenic |
| AAGAATGTTGGTGGAGGTGG+TGG | 0.497263 | 2_2:+11369351 | Msa0238090:CDS |
| GCCAGCTGTTCAAGGCCTAC+CGG | 0.501295 | 2_2:+11369587 | Msa0238090:CDS |
| ATGGCTTGGGTAGTGGAAAT+GGG | 0.504494 | 2_2:+11369205 | Msa0238090:CDS |
| CCAATGGGAGGAGGAGCAAT+GGG | 0.508430 | 2_2:+11369525 | Msa0238090:CDS |
| GCAATGGGAGAAAAGAAAGA+AGG | 0.508873 | 2_2:-11367418 | None:intergenic |
| GACAATGGAAAAGGTGGTGG+AGG | 0.511844 | 2_2:+11368697 | Msa0238090:CDS |
| GATTTATGCAAGACCACCAA+TGG | 0.513574 | 2_2:+11369773 | Msa0238090:CDS |
| GGTAGTTTCATCTTATTCAA+AGG | 0.515445 | 2_2:-11369060 | None:intergenic |
| GCAGCTGCGATGAACGGCGG+TGG | 0.515631 | 2_2:+11369609 | Msa0238090:CDS |
| AATGGGAATGGAGGAAAGAA+AGG | 0.515830 | 2_2:+11369222 | Msa0238090:CDS |
| CGCAATGATGAATCAACAAA+GGG | 0.517484 | 2_2:+11369713 | Msa0238090:CDS |
| CCGCCGTTCATCGCAGCTGC+CGG | 0.518191 | 2_2:-11369606 | None:intergenic |
| CAATATGAATGGTATGCCAA+TGG | 0.523524 | 2_2:+11369509 | Msa0238090:CDS |
| ATGGTTTCTAACAATATGAA+TGG | 0.524254 | 2_2:+11369498 | Msa0238090:CDS |
| ATGCCAATGATGAGTCAAAT+GGG | 0.525603 | 2_2:+11369555 | Msa0238090:CDS |
| CTACCGGCAGCTGCGATGAA+CGG | 0.526265 | 2_2:+11369603 | Msa0238090:CDS |
| GGCGGAGGCAATGGAAAGAA+AGG | 0.528122 | 2_2:+11369141 | Msa0238090:CDS |
| ATGAATGCTCAAAAGGGTGT+TGG | 0.528773 | 2_2:+11369114 | Msa0238090:CDS |
| CAACAAAGGGCAATACCAGC+TGG | 0.531880 | 2_2:+11369726 | Msa0238090:CDS |
| AGATGATGAATTGGTGATGC+TGG | 0.533354 | 2_2:+11369919 | Msa0238090:three_prime_UTR |
| GGAGGAAAGAAAGGTGGTGG+CGG | 0.534225 | 2_2:+11369231 | Msa0238090:CDS |
| CAATGGGAGAAAAGAAAGAA+GGG | 0.534511 | 2_2:-11367417 | None:intergenic |
| AAAGAGGGAGAAATGTAGAA+AGG | 0.536287 | 2_2:-11367528 | None:intergenic |
| GTAAATGGGATGGGAGAAAG+TGG | 0.537153 | 2_2:+11369411 | Msa0238090:CDS |
| CGTTCATCGCAGCTGCCGGT+AGG | 0.538577 | 2_2:-11369602 | None:intergenic |
| GGTGGAGGAGGCGGTGTCAG+TGG | 0.540462 | 2_2:+11369627 | Msa0238090:CDS |
| GCCAATGGGAGGAGGAGCAA+TGG | 0.540634 | 2_2:+11369524 | Msa0238090:CDS |
| AATAAGATGAAACTACCTAT+GGG | 0.540693 | 2_2:+11369066 | Msa0238090:CDS |
| TAGTGAGAAGATGAACAGAA+AGG | 0.543002 | 2_2:-11367289 | None:intergenic |
| TGGTGGTCCTGAAATGATGA+TGG | 0.543773 | 2_2:+11369656 | Msa0238090:CDS |
| AGAACTTTGGGGTGCTCCAA+AGG | 0.546283 | 2_2:+11368615 | Msa0238090:CDS |
| TCATCCTAATGTGGGCCACA+TGG | 0.547730 | 2_2:+11369479 | Msa0238090:CDS |
| AATATGAATGGTATGCCAAT+GGG | 0.548285 | 2_2:+11369510 | Msa0238090:CDS |
| TACATGTAATTAACACCCAT+TGG | 0.549609 | 2_2:-11369789 | None:intergenic |
| GGGGTGTGAAGAAGAAGGCT+TGG | 0.550165 | 2_2:-11367376 | None:intergenic |
| GCATTCATCATCATGTGAGC+AGG | 0.550437 | 2_2:-11369099 | None:intergenic |
| TAAAGGATTTGGAGATCTGA+AGG | 0.551549 | 2_2:+11368864 | Msa0238090:CDS |
| AATGGGAATAAGAATGTTGG+TGG | 0.551727 | 2_2:+11369342 | Msa0238090:CDS |
| TCAAGAAGCTTGCAAAATCA+GGG | 0.551852 | 2_2:+11368584 | Msa0238090:CDS |
| GTGAGAAGATGAACAGAAAG+GGG | 0.552020 | 2_2:-11367287 | None:intergenic |
| TCAAAGGGTTCTAACAAAGA+GGG | 0.561418 | 2_2:-11367543 | None:intergenic |
| CAAAATCAGCCAAAGGGTGG+TGG | 0.564957 | 2_2:+11368760 | Msa0238090:CDS |
| ATTGACAATGGAAAAGGTGG+TGG | 0.565333 | 2_2:+11368694 | Msa0238090:CDS |
| TATGGATCTTGAGGATGTTG+TGG | 0.566826 | 2_2:-11369840 | None:intergenic |
| GGATCTTGAGGATGTTGTGG+TGG | 0.571902 | 2_2:-11369837 | None:intergenic |
| AAGTTGGAGTATGGATCTTG+AGG | 0.572375 | 2_2:-11369849 | None:intergenic |
| GGTGGTGGTCATCCTAATGT+GGG | 0.574953 | 2_2:+11369471 | Msa0238090:CDS |
| AATGGTATGCCAATGGGAGG+AGG | 0.574960 | 2_2:+11369516 | Msa0238090:CDS |
| GGCAATGGAAAGAAAGGTGG+TGG | 0.576650 | 2_2:+11369147 | Msa0238090:CDS |
| AATGGAGGAAAGAAAGGTGG+TGG | 0.577240 | 2_2:+11369228 | Msa0238090:CDS |
| AATAATCAGAGTCAGAATCA+AGG | 0.578254 | 2_2:+11369264 | Msa0238090:CDS |
| AGGGTGTGTGAATATAAGCA+AGG | 0.579993 | 2_2:-11367398 | None:intergenic |
| TTGGGTAGTGGAAATGGGAA+TGG | 0.582626 | 2_2:+11369210 | Msa0238090:CDS |
| ATTTATGCAAGACCACCAAT+GGG | 0.585459 | 2_2:+11369774 | Msa0238090:CDS |
| AAGAACATGCAAATTGACAA+TGG | 0.586548 | 2_2:+11368682 | Msa0238090:CDS |
| GGGTGTGTGAATATAAGCAA+GGG | 0.587286 | 2_2:-11367397 | None:intergenic |
| TAAGATGAAACTACCTATGG+GGG | 0.588463 | 2_2:+11369068 | Msa0238090:CDS |
| GGTAGTGGAAATGGGAATGG+AGG | 0.592004 | 2_2:+11369213 | Msa0238090:CDS |
| ATACCAACAACAACAATACA+TGG | 0.592297 | 2_2:+11369689 | Msa0238090:CDS |
| CCATGAACTTGAACAGGCAC+AGG | 0.594078 | 2_2:-11369186 | None:intergenic |
| AATAACCAAAATCAGCCAAA+GGG | 0.594678 | 2_2:+11368754 | Msa0238090:CDS |
| AAGGGTGTTGGAAATGGCGG+AGG | 0.594852 | 2_2:+11369126 | Msa0238090:CDS |
| CAGAGTCAGAATCAAGGTGG+AGG | 0.601904 | 2_2:+11369270 | Msa0238090:CDS |
| CCGCAATGATGAATCAACAA+AGG | 0.602271 | 2_2:+11369712 | Msa0238090:CDS |
| GGTGACCGTTTCTGGAAATG+TGG | 0.604667 | 2_2:+11368546 | Msa0238090:CDS |
| GAAAGGTTGAGAACATAACT+AGG | 0.604718 | 2_2:-11367511 | None:intergenic |
| TGAGGAGTTTGATGATGAGA+TGG | 0.606830 | 2_2:+11369032 | Msa0238090:CDS |
| GGACTTCCAAACATGGGTGG+TGG | 0.608332 | 2_2:+11369456 | Msa0238090:CDS |
| AGAGAAAGATGAGAAATGTG+AGG | 0.610284 | 2_2:-11367315 | None:intergenic |
| GAATAATGGACTTCCAAACA+TGG | 0.610386 | 2_2:+11369449 | Msa0238090:CDS |
| ACTGAGATAGATGCTGAACA+AGG | 0.610845 | 2_2:+11368520 | Msa0238090:CDS |
| ATGTAATTAACACCCATTGG+TGG | 0.615835 | 2_2:-11369786 | None:intergenic |
| GGTGTCAGTGGTGGATATGG+TGG | 0.616024 | 2_2:+11369639 | Msa0238090:CDS |
| CAAAGGGTGGTGGCCAACAA+GGG | 0.616059 | 2_2:+11368770 | Msa0238090:CDS |
| ATGATGATGAATGCTCAAAA+GGG | 0.619348 | 2_2:+11369108 | Msa0238090:CDS |
| GGAGGGTAGCTATAAGGCGG+AGG | 0.620544 | 2_2:-11369813 | None:intergenic |
| CCTTTGTTGATTCATCATTG+CGG | 0.622636 | 2_2:-11369712 | None:intergenic |
| GGGAATAAGAATGTTGGTGG+AGG | 0.623326 | 2_2:+11369345 | Msa0238090:CDS |
| AATCAAAATACAAACACGAA+AGG | 0.624431 | 2_2:+11368928 | Msa0238090:CDS |
| CAAAGGGCAATACCAGCTGG+TGG | 0.624465 | 2_2:+11369729 | Msa0238090:CDS |
| GATAGATGCTGAACAAGGGA+AGG | 0.625794 | 2_2:+11368525 | Msa0238090:CDS |
| AAATAACCAAAATCAGCCAA+AGG | 0.628590 | 2_2:+11368753 | Msa0238090:CDS |
| CAAAAGGGTGTTGGAAATGG+CGG | 0.630177 | 2_2:+11369123 | Msa0238090:CDS |
| CCGGCAGCTGCGATGAACGG+CGG | 0.637137 | 2_2:+11369606 | Msa0238090:CDS |
| GGGAATGGAGGAAAGAAAGG+TGG | 0.637548 | 2_2:+11369225 | Msa0238090:CDS |
| AACCAAAATCAGCCAAAGGG+TGG | 0.639926 | 2_2:+11368757 | Msa0238090:CDS |
| GGGAAACATGCAGAACTTTG+GGG | 0.640585 | 2_2:+11368604 | Msa0238090:CDS |
| ATAAGATGAAACTACCTATG+GGG | 0.647445 | 2_2:+11369067 | Msa0238090:CDS |
| CAAATTGACAATGGAAAAGG+TGG | 0.648543 | 2_2:+11368691 | Msa0238090:CDS |
| AAATGGAGGTGGAATGCCGG+AGG | 0.650010 | 2_2:+11369314 | Msa0238090:CDS |
| CTGAGATAGATGCTGAACAA+GGG | 0.650734 | 2_2:+11368521 | Msa0238090:CDS |
| AATGGAAAGAAAGGTGGTGG+CGG | 0.653206 | 2_2:+11369150 | Msa0238090:CDS |
| GGTGGGATTCCAAATAACAA+TGG | 0.655401 | 2_2:+11369378 | Msa0238090:CDS |
| AATAATGGACTTCCAAACAT+GGG | 0.656303 | 2_2:+11369450 | Msa0238090:CDS |
| GGTGGAGGTAATAAGAACAA+TGG | 0.658879 | 2_2:+11369285 | Msa0238090:CDS |
| AATGGAGGTGGAATGCCGGA+GGG | 0.666899 | 2_2:+11369315 | Msa0238090:CDS |
| ATGAATGGTATGCCAATGGG+AGG | 0.670599 | 2_2:+11369513 | Msa0238090:CDS |
| GGTGTGTGAATATAAGCAAG+GGG | 0.670704 | 2_2:-11367396 | None:intergenic |
| TCATATTGTTAGAAACCATG+TGG | 0.673268 | 2_2:-11369494 | None:intergenic |
| GGAGGTAATAAGAACAATGG+TGG | 0.674022 | 2_2:+11369288 | Msa0238090:CDS |
| GGGATTCCAAATAACAATGG+GGG | 0.674410 | 2_2:+11369381 | Msa0238090:CDS |
| AAAGTGAACATACACTGTGA+CGG | 0.675992 | 2_2:+11367832 | Msa0238090:CDS |
| GGTGGTCCTGAAATGATGAT+GGG | 0.676791 | 2_2:+11369657 | Msa0238090:CDS |
| GGTCCTGAAATGATGATGGG+TGG | 0.683123 | 2_2:+11369660 | Msa0238090:CDS |
| AATCAGAGTCAGAATCAAGG+TGG | 0.685165 | 2_2:+11369267 | Msa0238090:CDS |
| AATGGACTTCCAAACATGGG+TGG | 0.695955 | 2_2:+11369453 | Msa0238090:CDS |
| GGAGGCAATGGAAAGAAAGG+TGG | 0.701098 | 2_2:+11369144 | Msa0238090:CDS |
| AAGATGAAACTACCTATGGG+GGG | 0.701851 | 2_2:+11369069 | Msa0238090:CDS |
| TGATGATGAGTATTCTGATG+AGG | 0.708185 | 2_2:+11369014 | Msa0238090:CDS |
| GGAGGAGGGTAGCTATAAGG+CGG | 0.722291 | 2_2:-11369816 | None:intergenic |
| GTGTGTGAATATAAGCAAGG+GGG | 0.725063 | 2_2:-11367395 | None:intergenic |
| TGGGATTCCAAATAACAATG+GGG | 0.736086 | 2_2:+11369380 | Msa0238090:CDS |
| CCAATGATGAGTCAAATGGG+AGG | 0.737345 | 2_2:+11369558 | Msa0238090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAAGAAAAAAATG+GGG | + | chr2_2:11370123-11370142 | Msa0238090:three_prime_UTR | 10.0% |
| !!! | ATATTTAGTTTTATAGATGA+AGG | - | chr2_2:11367452-11367471 | None:intergenic | 15.0% |
| !!! | ACTCATTTTTTTTTATCAAA+GGG | - | chr2_2:11367561-11367580 | None:intergenic | 15.0% |
| !!! | TACTCATTTTTTTTTATCAA+AGG | - | chr2_2:11367562-11367581 | None:intergenic | 15.0% |
| !!! | TTATGAGTATTTTTTTTCAT+GGG | - | chr2_2:11368202-11368221 | None:intergenic | 15.0% |
| !!! | TTTATGAGTATTTTTTTTCA+TGG | - | chr2_2:11368203-11368222 | None:intergenic | 15.0% |
| !!! | ATTGTGTAATTTAATTTTGT+AGG | + | chr2_2:11368487-11368506 | Msa0238090:intron | 15.0% |
| !!! | TTGTGTAATTTAATTTTGTA+GGG | + | chr2_2:11368488-11368507 | Msa0238090:intron | 15.0% |
| !! | AAAAAACTTAGATGAAAAAA+AGG | - | chr2_2:11370014-11370033 | None:intergenic | 15.0% |
| !!! | AATCTATAAATTTAAAGTTC+AGG | - | chr2_2:11370050-11370069 | None:intergenic | 15.0% |
| !! | AATTTAAAAGAAAAAAATGG+GGG | + | chr2_2:11370124-11370143 | Msa0238090:three_prime_UTR | 15.0% |
| !! | ATGACATTTCTAATAAAGTA+AGG | + | chr2_2:11367729-11367748 | Msa0238090:intron | 20.0% |
| !!! | AAACTTTTTTTTTAGCAAGT+TGG | - | chr2_2:11367925-11367944 | None:intergenic | 20.0% |
| !!! | AGGTATATACATATTTTTCT+TGG | - | chr2_2:11368271-11368290 | None:intergenic | 20.0% |
| !!! | ATGATTTAAGATATAACAAG+TGG | - | chr2_2:11368422-11368441 | None:intergenic | 20.0% |
| !!! | TGTGTAATTTAATTTTGTAG+GGG | + | chr2_2:11368489-11368508 | Msa0238090:intron | 20.0% |
| !! | GAACAACTTCAAAATATTAA+AGG | + | chr2_2:11368847-11368866 | Msa0238090:CDS | 20.0% |
| !! | CTTCAAAATATTAAAGGATT+TGG | + | chr2_2:11368853-11368872 | Msa0238090:CDS | 20.0% |
| !!! | AGTTTTATAGATGAAGGTTT+TGG | - | chr2_2:11367446-11367465 | None:intergenic | 25.0% |
| ! | GACTATGAATATGAATGAAA+AGG | - | chr2_2:11367955-11367974 | None:intergenic | 25.0% |
| !! | ACTTTTCTTTGATCTGTTAT+TGG | + | chr2_2:11368138-11368157 | Msa0238090:intron | 25.0% |
| ! | GTATCAATATGAATGAAATG+AGG | - | chr2_2:11368291-11368310 | None:intergenic | 25.0% |
| !! | CAAGAGTACAAAGTAAAATA+TGG | - | chr2_2:11368342-11368361 | None:intergenic | 25.0% |
| !! | ATTTAAGATATAACAAGTGG+TGG | - | chr2_2:11368419-11368438 | None:intergenic | 25.0% |
| !!! | TTCGTGTTTGTATTTTGATT+TGG | - | chr2_2:11368928-11368947 | None:intergenic | 25.0% |
| ! | AATCAAAATACAAACACGAA+AGG | + | chr2_2:11368928-11368947 | Msa0238090:CDS | 25.0% |
| ! | AATAAGATGAAACTACCTAT+GGG | + | chr2_2:11369066-11369085 | Msa0238090:CDS | 25.0% |
| ! | AAAAATGGGAATAAGAATGT+TGG | + | chr2_2:11369339-11369358 | Msa0238090:CDS | 25.0% |
| ! | ATGGTTTCTAACAATATGAA+TGG | + | chr2_2:11369498-11369517 | Msa0238090:CDS | 25.0% |
| !! | AGAAGAGATTTTGAAGATAC+AGG | + | chr2_2:11367583-11367602 | Msa0238090:CDS | 30.0% |
| ! | GTAACACTAATTCTTGCTTT+TGG | + | chr2_2:11367773-11367792 | Msa0238090:intron | 30.0% |
| !!! | CTAATTCTTGCTTTTGGTTT+TGG | + | chr2_2:11367779-11367798 | Msa0238090:intron | 30.0% |
| AAAATCTTGCAGAAGATTGA+TGG | + | chr2_2:11367874-11367893 | Msa0238090:CDS | 30.0% | |
| ! | ACATATTTTTCTTGGTCGAA+TGG | - | chr2_2:11368263-11368282 | None:intergenic | 30.0% |
| !! | TTATTGTTGTTGTTTGCCTT+TGG | - | chr2_2:11368634-11368653 | None:intergenic | 30.0% |
| !! | TTTGATTTGCAATGTTGTTC+TGG | - | chr2_2:11368660-11368679 | None:intergenic | 30.0% |
| AAGAACATGCAAATTGACAA+TGG | + | chr2_2:11368682-11368701 | Msa0238090:CDS | 30.0% | |
| ATGCAAATTGACAATGGAAA+AGG | + | chr2_2:11368688-11368707 | Msa0238090:CDS | 30.0% | |
| AAATAACCAAAATCAGCCAA+AGG | + | chr2_2:11368753-11368772 | Msa0238090:CDS | 30.0% | |
| AATAACCAAAATCAGCCAAA+GGG | + | chr2_2:11368754-11368773 | Msa0238090:CDS | 30.0% | |
| !!! | TTTGTATTTTGATTTGGTGG+TGG | - | chr2_2:11368922-11368941 | None:intergenic | 30.0% |
| !!! | GTGTTTGTATTTTGATTTGG+TGG | - | chr2_2:11368925-11368944 | None:intergenic | 30.0% |
| GAAAAATCATCATACTCTTC+AGG | - | chr2_2:11368970-11368989 | None:intergenic | 30.0% | |
| !! | TGATTTTTCTGATGATGAGT+TGG | + | chr2_2:11368981-11369000 | Msa0238090:CDS | 30.0% |
| GGTAGTTTCATCTTATTCAA+AGG | - | chr2_2:11369063-11369082 | None:intergenic | 30.0% | |
| GAATAAGATGAAACTACCTA+TGG | + | chr2_2:11369065-11369084 | Msa0238090:CDS | 30.0% | |
| ATAAGATGAAACTACCTATG+GGG | + | chr2_2:11369067-11369086 | Msa0238090:CDS | 30.0% | |
| ! | ATGATGATGAATGCTCAAAA+GGG | + | chr2_2:11369108-11369127 | Msa0238090:CDS | 30.0% |
| AATAATCAGAGTCAGAATCA+AGG | + | chr2_2:11369264-11369283 | Msa0238090:CDS | 30.0% | |
| !! | TTTTTACCCCCATTGTTATT+TGG | - | chr2_2:11369390-11369409 | None:intergenic | 30.0% |
| AAATAACAATGGGGGTAAAA+AGG | + | chr2_2:11369389-11369408 | Msa0238090:CDS | 30.0% | |
| GTTCAAGGTATGATGAATAA+TGG | + | chr2_2:11369435-11369454 | Msa0238090:CDS | 30.0% | |
| !! | AATAATGGACTTCCAAACAT+GGG | + | chr2_2:11369450-11369469 | Msa0238090:CDS | 30.0% |
| TCATATTGTTAGAAACCATG+TGG | - | chr2_2:11369497-11369516 | None:intergenic | 30.0% | |
| AATATGAATGGTATGCCAAT+GGG | + | chr2_2:11369510-11369529 | Msa0238090:CDS | 30.0% | |
| ! | TGTATTGTTGTTGTTGGTAT+GGG | - | chr2_2:11369689-11369708 | None:intergenic | 30.0% |
| ! | ATGTATTGTTGTTGTTGGTA+TGG | - | chr2_2:11369690-11369709 | None:intergenic | 30.0% |
| ATACCAACAACAACAATACA+TGG | + | chr2_2:11369689-11369708 | Msa0238090:CDS | 30.0% | |
| TACATGTAATTAACACCCAT+TGG | - | chr2_2:11369792-11369811 | None:intergenic | 30.0% | |
| ! | ATTTTCGTCGTTGAAAAAGT+TGG | - | chr2_2:11369868-11369887 | None:intergenic | 30.0% |
| GAAGAAATGAGATGATGAAT+TGG | + | chr2_2:11369910-11369929 | Msa0238090:exon | 30.0% | |
| CTCATTTCTTTCAAAACTCA+AGG | + | chr2_2:11370181-11370200 | Msa0238090:three_prime_UTR | 30.0% | |
| AGTGAGAAGATGAACAGAAA+GGG | - | chr2_2:11367291-11367310 | None:intergenic | 35.0% | |
| TAGTGAGAAGATGAACAGAA+AGG | - | chr2_2:11367292-11367311 | None:intergenic | 35.0% | |
| AGAGAAAGATGAGAAATGTG+AGG | - | chr2_2:11367318-11367337 | None:intergenic | 35.0% | |
| GAGTTAGAGAGAAAAATGGT+GGG | - | chr2_2:11367357-11367376 | None:intergenic | 35.0% | |
| CTTGGAGTTAGAGAGAAAAA+TGG | - | chr2_2:11367361-11367380 | None:intergenic | 35.0% | |
| CAATGGGAGAAAAGAAAGAA+GGG | - | chr2_2:11367420-11367439 | None:intergenic | 35.0% | |
| !!! | ATGAAGGTTTTGGAAGCAAT+GGG | - | chr2_2:11367436-11367455 | None:intergenic | 35.0% |
| GAAAGGTTGAGAACATAACT+AGG | - | chr2_2:11367514-11367533 | None:intergenic | 35.0% | |
| AAAGAGGGAGAAATGTAGAA+AGG | - | chr2_2:11367531-11367550 | None:intergenic | 35.0% | |
| ! | TCAAAGGGTTCTAACAAAGA+GGG | - | chr2_2:11367546-11367565 | None:intergenic | 35.0% |
| ! | ATCAAAGGGTTCTAACAAAG+AGG | - | chr2_2:11367547-11367566 | None:intergenic | 35.0% |
| AAAGTGAACATACACTGTGA+CGG | + | chr2_2:11367832-11367851 | Msa0238090:CDS | 35.0% | |
| AAGTTGGAAGAGTGAATATG+AGG | - | chr2_2:11367909-11367928 | None:intergenic | 35.0% | |
| CAAACTGTGACGATATGAAT+TGG | - | chr2_2:11368085-11368104 | None:intergenic | 35.0% | |
| TACAAACAGTAGTGAGAGAA+TGG | - | chr2_2:11368110-11368129 | None:intergenic | 35.0% | |
| ! | TATTGGTAACAGTGAGCATA+TGG | + | chr2_2:11368155-11368174 | Msa0238090:intron | 35.0% |
| GCTTCTTGATGAGAACATTT+GGG | - | chr2_2:11368573-11368592 | None:intergenic | 35.0% | |
| AGCTTCTTGATGAGAACATT+TGG | - | chr2_2:11368574-11368593 | None:intergenic | 35.0% | |
| ATCAAGAAGCTTGCAAAATC+AGG | + | chr2_2:11368583-11368602 | Msa0238090:CDS | 35.0% | |
| TCAAGAAGCTTGCAAAATCA+GGG | + | chr2_2:11368584-11368603 | Msa0238090:CDS | 35.0% | |
| CAAATTGACAATGGAAAAGG+TGG | + | chr2_2:11368691-11368710 | Msa0238090:CDS | 35.0% | |
| TGGAGGAAACAAAAACAACA+AGG | + | chr2_2:11368714-11368733 | Msa0238090:CDS | 35.0% | |
| GGAGGAAACAAAAACAACAA+GGG | + | chr2_2:11368715-11368734 | Msa0238090:CDS | 35.0% | |
| GAGGAAACAAAAACAACAAG+GGG | + | chr2_2:11368716-11368735 | Msa0238090:CDS | 35.0% | |
| AAAAACAACAAGGGGCAAAA+GGG | + | chr2_2:11368724-11368743 | Msa0238090:CDS | 35.0% | |
| ! | TGTTGTTGTTGTTGTTGTTG+AGG | - | chr2_2:11368802-11368821 | None:intergenic | 35.0% |
| TAAAGGATTTGGAGATCTGA+AGG | + | chr2_2:11368864-11368883 | Msa0238090:CDS | 35.0% | |
| ATGTTCATGTCCTTGAATTG+AGG | - | chr2_2:11368892-11368911 | None:intergenic | 35.0% | |
| ! | TGATGATGAGTATTCTGATG+AGG | + | chr2_2:11369014-11369033 | Msa0238090:CDS | 35.0% |
| TAAGATGAAACTACCTATGG+GGG | + | chr2_2:11369068-11369087 | Msa0238090:CDS | 35.0% | |
| ! | CATGATGATGAATGCTCAAA+AGG | + | chr2_2:11369107-11369126 | Msa0238090:CDS | 35.0% |
| AAGAACAATGGTGGCAAAAA+TGG | + | chr2_2:11369297-11369316 | Msa0238090:CDS | 35.0% | |
| !! | TTATTCCCATTTTTACCCTC+CGG | - | chr2_2:11369333-11369352 | None:intergenic | 35.0% |
| AATGGGAATAAGAATGTTGG+TGG | + | chr2_2:11369342-11369361 | Msa0238090:CDS | 35.0% | |
| GTGGGATTCCAAATAACAAT+GGG | + | chr2_2:11369379-11369398 | Msa0238090:CDS | 35.0% | |
| TGGGATTCCAAATAACAATG+GGG | + | chr2_2:11369380-11369399 | Msa0238090:CDS | 35.0% | |
| AATGGGGGTAAAAAGGTAAA+TGG | + | chr2_2:11369396-11369415 | Msa0238090:CDS | 35.0% | |
| ATGGGGGTAAAAAGGTAAAT+GGG | + | chr2_2:11369397-11369416 | Msa0238090:CDS | 35.0% | |
| GGTAAAAAGGTAAATGGGAT+GGG | + | chr2_2:11369402-11369421 | Msa0238090:CDS | 35.0% | |
| !! | GAATAATGGACTTCCAAACA+TGG | + | chr2_2:11369449-11369468 | Msa0238090:CDS | 35.0% |
| CAATATGAATGGTATGCCAA+TGG | + | chr2_2:11369509-11369528 | Msa0238090:CDS | 35.0% | |
| ATGCCAATGATGAGTCAAAT+GGG | + | chr2_2:11369555-11369574 | Msa0238090:CDS | 35.0% | |
| !! | CCTTTGTTGATTCATCATTG+CGG | - | chr2_2:11369715-11369734 | None:intergenic | 35.0% |
| CGCAATGATGAATCAACAAA+GGG | + | chr2_2:11369713-11369732 | Msa0238090:CDS | 35.0% | |
| ATTTATGCAAGACCACCAAT+GGG | + | chr2_2:11369774-11369793 | Msa0238090:CDS | 35.0% | |
| ATGTAATTAACACCCATTGG+TGG | - | chr2_2:11369789-11369808 | None:intergenic | 35.0% | |
| TCGTTGAAAAAGTTGGAGTA+TGG | - | chr2_2:11369861-11369880 | None:intergenic | 35.0% | |
| AAGAAAAAAATGGGGGAGAA+TGG | + | chr2_2:11370131-11370150 | Msa0238090:three_prime_UTR | 35.0% | |
| AGAAAAAAATGGGGGAGAAT+GGG | + | chr2_2:11370132-11370151 | Msa0238090:three_prime_UTR | 35.0% | |
| GTGAGAAGATGAACAGAAAG+GGG | - | chr2_2:11367290-11367309 | None:intergenic | 40.0% | |
| GGAGTTAGAGAGAAAAATGG+TGG | - | chr2_2:11367358-11367377 | None:intergenic | 40.0% | |
| GTGTGTGAATATAAGCAAGG+GGG | - | chr2_2:11367398-11367417 | None:intergenic | 40.0% | |
| GGTGTGTGAATATAAGCAAG+GGG | - | chr2_2:11367399-11367418 | None:intergenic | 40.0% | |
| GGGTGTGTGAATATAAGCAA+GGG | - | chr2_2:11367400-11367419 | None:intergenic | 40.0% | |
| AGGGTGTGTGAATATAAGCA+AGG | - | chr2_2:11367401-11367420 | None:intergenic | 40.0% | |
| GCAATGGGAGAAAAGAAAGA+AGG | - | chr2_2:11367421-11367440 | None:intergenic | 40.0% | |
| !!! | GATGAAGGTTTTGGAAGCAA+TGG | - | chr2_2:11367437-11367456 | None:intergenic | 40.0% |
| TGTGACGATATGAATTGGCA+AGG | - | chr2_2:11368080-11368099 | None:intergenic | 40.0% | |
| ACTGAGATAGATGCTGAACA+AGG | + | chr2_2:11368520-11368539 | Msa0238090:CDS | 40.0% | |
| CTGAGATAGATGCTGAACAA+GGG | + | chr2_2:11368521-11368540 | Msa0238090:CDS | 40.0% | |
| AGGGAAACATGCAGAACTTT+GGG | + | chr2_2:11368603-11368622 | Msa0238090:CDS | 40.0% | |
| ATTGACAATGGAAAAGGTGG+TGG | + | chr2_2:11368694-11368713 | Msa0238090:CDS | 40.0% | |
| CAAAAACAACAAGGGGCAAA+AGG | + | chr2_2:11368723-11368742 | Msa0238090:CDS | 40.0% | |
| !!! | GGCTGATTTTGGTTATTTCC+AGG | - | chr2_2:11368751-11368770 | None:intergenic | 40.0% |
| TCAACAACAGTTACAACAGC+TGG | + | chr2_2:11368825-11368844 | Msa0238090:CDS | 40.0% | |
| !! | TGAGGAGTTTGATGATGAGA+TGG | + | chr2_2:11369032-11369051 | Msa0238090:CDS | 40.0% |
| AAGATGAAACTACCTATGGG+GGG | + | chr2_2:11369069-11369088 | Msa0238090:CDS | 40.0% | |
| ! | ATGAATGCTCAAAAGGGTGT+TGG | + | chr2_2:11369114-11369133 | Msa0238090:CDS | 40.0% |
| AATGGGAATGGAGGAAAGAA+AGG | + | chr2_2:11369222-11369241 | Msa0238090:CDS | 40.0% | |
| AATCAGAGTCAGAATCAAGG+TGG | + | chr2_2:11369267-11369286 | Msa0238090:CDS | 40.0% | |
| GGTGGAGGTAATAAGAACAA+TGG | + | chr2_2:11369285-11369304 | Msa0238090:CDS | 40.0% | |
| GGAGGTAATAAGAACAATGG+TGG | + | chr2_2:11369288-11369307 | Msa0238090:CDS | 40.0% | |
| AACAATGGTGGCAAAAATGG+AGG | + | chr2_2:11369300-11369319 | Msa0238090:CDS | 40.0% | |
| ! | AATAAGAATGTTGGTGGAGG+TGG | + | chr2_2:11369348-11369367 | Msa0238090:CDS | 40.0% |
| GGTGGGATTCCAAATAACAA+TGG | + | chr2_2:11369378-11369397 | Msa0238090:CDS | 40.0% | |
| GGGATTCCAAATAACAATGG+GGG | + | chr2_2:11369381-11369400 | Msa0238090:CDS | 40.0% | |
| GGGTAAAAAGGTAAATGGGA+TGG | + | chr2_2:11369401-11369420 | Msa0238090:CDS | 40.0% | |
| CATGCCAATGATGAGTCAAA+TGG | + | chr2_2:11369554-11369573 | Msa0238090:CDS | 40.0% | |
| TTTCCACCCATCATCATTTC+AGG | - | chr2_2:11369666-11369685 | None:intergenic | 40.0% | |
| CCGCAATGATGAATCAACAA+AGG | + | chr2_2:11369712-11369731 | Msa0238090:CDS | 40.0% | |
| AATCTATCATTTCCACCAGC+TGG | - | chr2_2:11369744-11369763 | None:intergenic | 40.0% | |
| ! | GGTGGTCTTGCATAAATCAT+TGG | - | chr2_2:11369771-11369790 | None:intergenic | 40.0% |
| GATTTATGCAAGACCACCAA+TGG | + | chr2_2:11369773-11369792 | Msa0238090:CDS | 40.0% | |
| TATGGATCTTGAGGATGTTG+TGG | - | chr2_2:11369843-11369862 | None:intergenic | 40.0% | |
| AAGTTGGAGTATGGATCTTG+AGG | - | chr2_2:11369852-11369871 | None:intergenic | 40.0% | |
| !! | AGATGATGAATTGGTGATGC+TGG | + | chr2_2:11369919-11369938 | Msa0238090:three_prime_UTR | 40.0% |
| GAAAAAAATGGGGGAGAATG+GGG | + | chr2_2:11370133-11370152 | Msa0238090:three_prime_UTR | 40.0% | |
| TGCAGAGTAGAAAAGTCAGG+TGG | - | chr2_2:11368057-11368076 | None:intergenic | 45.0% | |
| AGGTGCAGAGTAGAAAAGTC+AGG | - | chr2_2:11368060-11368079 | None:intergenic | 45.0% | |
| GATAGATGCTGAACAAGGGA+AGG | + | chr2_2:11368525-11368544 | Msa0238090:CDS | 45.0% | |
| TGGGTCCACATTTCCAGAAA+CGG | - | chr2_2:11368554-11368573 | None:intergenic | 45.0% | |
| CAGGGAAACATGCAGAACTT+TGG | + | chr2_2:11368602-11368621 | Msa0238090:CDS | 45.0% | |
| GGGAAACATGCAGAACTTTG+GGG | + | chr2_2:11368604-11368623 | Msa0238090:CDS | 45.0% | |
| AACCAAAATCAGCCAAAGGG+TGG | + | chr2_2:11368757-11368776 | Msa0238090:CDS | 45.0% | |
| ! | GTTGAGGATTTTGCCCTTGT+TGG | - | chr2_2:11368786-11368805 | None:intergenic | 45.0% |
| !! | TCTGAAGGTGCCTCAATTCA+AGG | + | chr2_2:11368879-11368898 | Msa0238090:CDS | 45.0% |
| AAACTACCTATGGGGGGTAA+TGG | + | chr2_2:11369075-11369094 | Msa0238090:CDS | 45.0% | |
| GCATTCATCATCATGTGAGC+AGG | - | chr2_2:11369102-11369121 | None:intergenic | 45.0% | |
| !! | GCTCAAAAGGGTGTTGGAAA+TGG | + | chr2_2:11369120-11369139 | Msa0238090:CDS | 45.0% |
| !! | CAAAAGGGTGTTGGAAATGG+CGG | + | chr2_2:11369123-11369142 | Msa0238090:CDS | 45.0% |
| ! | AATGGAAAGAAAGGTGGTGG+CGG | + | chr2_2:11369150-11369169 | Msa0238090:CDS | 45.0% |
| ! | CCTGTTCAAGTTCATGGCTT+GGG | + | chr2_2:11369192-11369211 | Msa0238090:CDS | 45.0% |
| !! | ATGGCTTGGGTAGTGGAAAT+GGG | + | chr2_2:11369205-11369224 | Msa0238090:CDS | 45.0% |
| !! | TTGGGTAGTGGAAATGGGAA+TGG | + | chr2_2:11369210-11369229 | Msa0238090:CDS | 45.0% |
| AATGGAGGAAAGAAAGGTGG+TGG | + | chr2_2:11369228-11369247 | Msa0238090:CDS | 45.0% | |
| AATGGTGGCAAAAATGGAGG+TGG | + | chr2_2:11369303-11369322 | Msa0238090:CDS | 45.0% | |
| CAAAAATGGAGGTGGAATGC+CGG | + | chr2_2:11369311-11369330 | Msa0238090:CDS | 45.0% | |
| GAATGCCGGAGGGTAAAAAT+GGG | + | chr2_2:11369325-11369344 | Msa0238090:CDS | 45.0% | |
| ! | GGGAATAAGAATGTTGGTGG+AGG | + | chr2_2:11369345-11369364 | Msa0238090:CDS | 45.0% |
| GTAAATGGGATGGGAGAAAG+TGG | + | chr2_2:11369411-11369430 | Msa0238090:CDS | 45.0% | |
| ATGGGAGAAAGTGGTGTTCA+AGG | + | chr2_2:11369420-11369439 | Msa0238090:CDS | 45.0% | |
| ! | AATGGACTTCCAAACATGGG+TGG | + | chr2_2:11369453-11369472 | Msa0238090:CDS | 45.0% |
| ATGAATGGTATGCCAATGGG+AGG | + | chr2_2:11369513-11369532 | Msa0238090:CDS | 45.0% | |
| CCTCCCATTTGACTCATCAT+TGG | - | chr2_2:11369561-11369580 | None:intergenic | 45.0% | |
| CCAATGATGAGTCAAATGGG+AGG | + | chr2_2:11369558-11369577 | Msa0238090:CDS | 45.0% | |
| TGGTGGTCCTGAAATGATGA+TGG | + | chr2_2:11369656-11369675 | Msa0238090:CDS | 45.0% | |
| GGTGGTCCTGAAATGATGAT+GGG | + | chr2_2:11369657-11369676 | Msa0238090:CDS | 45.0% | |
| ! | CGGCCATGTATTGTTGTTGT+TGG | - | chr2_2:11369695-11369714 | None:intergenic | 45.0% |
| !! | TAAAATTTAAAAGAAAAAAA+TGG | + | chr2_2:11370121-11370140 | Msa0238090:three_prime_UTR | 5.0% |
| !! | AAAATTTAAAAGAAAAAAAT+GGG | + | chr2_2:11370122-11370141 | Msa0238090:three_prime_UTR | 5.0% |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr2_2:11367253-11367272 | None:intergenic | 50.0% | |
| ! | GGTGACCGTTTCTGGAAATG+TGG | + | chr2_2:11368546-11368565 | Msa0238090:CDS | 50.0% |
| !! | AGAACTTTGGGGTGCTCCAA+AGG | + | chr2_2:11368615-11368634 | Msa0238090:CDS | 50.0% |
| ! | GACAATGGAAAAGGTGGTGG+AGG | + | chr2_2:11368697-11368716 | Msa0238090:CDS | 50.0% |
| !! | CACCACCCTTTGGCTGATTT+TGG | - | chr2_2:11368762-11368781 | None:intergenic | 50.0% |
| CAAAATCAGCCAAAGGGTGG+TGG | + | chr2_2:11368760-11368779 | Msa0238090:CDS | 50.0% | |
| GGAGGCAATGGAAAGAAAGG+TGG | + | chr2_2:11369144-11369163 | Msa0238090:CDS | 50.0% | |
| GGCAATGGAAAGAAAGGTGG+TGG | + | chr2_2:11369147-11369166 | Msa0238090:CDS | 50.0% | |
| CCATGAACTTGAACAGGCAC+AGG | - | chr2_2:11369189-11369208 | None:intergenic | 50.0% | |
| ! | CCTGTGCCTGTTCAAGTTCA+TGG | + | chr2_2:11369186-11369205 | Msa0238090:CDS | 50.0% |
| ! | GCCTGTTCAAGTTCATGGCT+TGG | + | chr2_2:11369191-11369210 | Msa0238090:CDS | 50.0% |
| CCCAAGCCATGAACTTGAAC+AGG | - | chr2_2:11369195-11369214 | None:intergenic | 50.0% | |
| ! | CAAGTTCATGGCTTGGGTAG+TGG | + | chr2_2:11369198-11369217 | Msa0238090:CDS | 50.0% |
| !! | CATGGCTTGGGTAGTGGAAA+TGG | + | chr2_2:11369204-11369223 | Msa0238090:CDS | 50.0% |
| !! | GGTAGTGGAAATGGGAATGG+AGG | + | chr2_2:11369213-11369232 | Msa0238090:CDS | 50.0% |
| GGGAATGGAGGAAAGAAAGG+TGG | + | chr2_2:11369225-11369244 | Msa0238090:CDS | 50.0% | |
| CAGAGTCAGAATCAAGGTGG+AGG | + | chr2_2:11369270-11369289 | Msa0238090:CDS | 50.0% | |
| GGAATGCCGGAGGGTAAAAA+TGG | + | chr2_2:11369324-11369343 | Msa0238090:CDS | 50.0% | |
| ! | AAGAATGTTGGTGGAGGTGG+TGG | + | chr2_2:11369351-11369370 | Msa0238090:CDS | 50.0% |
| ! | GGTGGTGGTCATCCTAATGT+GGG | + | chr2_2:11369471-11369490 | Msa0238090:CDS | 50.0% |
| TCATCCTAATGTGGGCCACA+TGG | + | chr2_2:11369479-11369498 | Msa0238090:CDS | 50.0% | |
| GAAACCATGTGGCCCACATT+AGG | - | chr2_2:11369486-11369505 | None:intergenic | 50.0% | |
| AATGGTATGCCAATGGGAGG+AGG | + | chr2_2:11369516-11369535 | Msa0238090:CDS | 50.0% | |
| GGTAACATGCCAGCTGTTCA+AGG | + | chr2_2:11369579-11369598 | Msa0238090:CDS | 50.0% | |
| !! | GGTCCTGAAATGATGATGGG+TGG | + | chr2_2:11369660-11369679 | Msa0238090:CDS | 50.0% |
| CAACAAAGGGCAATACCAGC+TGG | + | chr2_2:11369726-11369745 | Msa0238090:CDS | 50.0% | |
| TCTTGAGGATGTTGTGGTGG+AGG | - | chr2_2:11369837-11369856 | None:intergenic | 50.0% | |
| GGATCTTGAGGATGTTGTGG+TGG | - | chr2_2:11369840-11369859 | None:intergenic | 50.0% | |
| GGGGTGTGAAGAAGAAGGCT+TGG | - | chr2_2:11367379-11367398 | None:intergenic | 55.0% | |
| ! | GCAAGGGGGTGTGAAGAAGA+AGG | - | chr2_2:11367384-11367403 | None:intergenic | 55.0% |
| CAAGGGAAGGTGACCGTTTC+TGG | + | chr2_2:11368538-11368557 | Msa0238090:CDS | 55.0% | |
| AACAAGGGGCAAAAGGGTCC+TGG | + | chr2_2:11368730-11368749 | Msa0238090:CDS | 55.0% | |
| ! | CAAAGGGTGGTGGCCAACAA+GGG | + | chr2_2:11368770-11368789 | Msa0238090:CDS | 55.0% |
| !! | AAGGGTGTTGGAAATGGCGG+AGG | + | chr2_2:11369126-11369145 | Msa0238090:CDS | 55.0% |
| ! | GTTGGAAATGGCGGAGGCAA+TGG | + | chr2_2:11369132-11369151 | Msa0238090:CDS | 55.0% |
| GGCGGAGGCAATGGAAAGAA+AGG | + | chr2_2:11369141-11369160 | Msa0238090:CDS | 55.0% | |
| !! | AAGAAAGGTGGTGGCGGTAG+TGG | + | chr2_2:11369156-11369175 | Msa0238090:CDS | 55.0% |
| ! | GGAGGAAAGAAAGGTGGTGG+CGG | + | chr2_2:11369231-11369250 | Msa0238090:CDS | 55.0% |
| AAATGGAGGTGGAATGCCGG+AGG | + | chr2_2:11369314-11369333 | Msa0238090:CDS | 55.0% | |
| AATGGAGGTGGAATGCCGGA+GGG | + | chr2_2:11369315-11369334 | Msa0238090:CDS | 55.0% | |
| ! | GTTGGTGGAGGTGGTGGTAA+TGG | + | chr2_2:11369357-11369376 | Msa0238090:CDS | 55.0% |
| !! | GTGGAGGTGGTGGTAATGGT+GGG | + | chr2_2:11369361-11369380 | Msa0238090:CDS | 55.0% |
| GGACTTCCAAACATGGGTGG+TGG | + | chr2_2:11369456-11369475 | Msa0238090:CDS | 55.0% | |
| GGATGACCACCACCCATGTT+TGG | - | chr2_2:11369465-11369484 | None:intergenic | 55.0% | |
| ! | GGGTGGTGGTCATCCTAATG+TGG | + | chr2_2:11369470-11369489 | Msa0238090:CDS | 55.0% |
| CCAATGGGAGGAGGAGCAAT+GGG | + | chr2_2:11369525-11369544 | Msa0238090:CDS | 55.0% | |
| !! | GGTGTCAGTGGTGGATATGG+TGG | + | chr2_2:11369639-11369658 | Msa0238090:CDS | 55.0% |
| CAAAGGGCAATACCAGCTGG+TGG | + | chr2_2:11369729-11369748 | Msa0238090:CDS | 55.0% | |
| GGAGGAGGGTAGCTATAAGG+CGG | - | chr2_2:11369819-11369838 | None:intergenic | 55.0% | |
| GGTGGAGGAGGGTAGCTATA+AGG | - | chr2_2:11369822-11369841 | None:intergenic | 55.0% | |
| ! | GAGGATGTTGTGGTGGAGGA+GGG | - | chr2_2:11369833-11369852 | None:intergenic | 55.0% |
| ! | TGAGGATGTTGTGGTGGAGG+AGG | - | chr2_2:11369834-11369853 | None:intergenic | 55.0% |
| CCTTGTTGGCCACCACCCTT+TGG | - | chr2_2:11368772-11368791 | None:intergenic | 60.0% | |
| ! | CCAAAGGGTGGTGGCCAACA+AGG | + | chr2_2:11368769-11368788 | Msa0238090:CDS | 60.0% |
| GCAGGACCATTACCCCCCAT+AGG | - | chr2_2:11369084-11369103 | None:intergenic | 60.0% | |
| !! | AAAGGTGGTGGCGGTAGTGG+TGG | + | chr2_2:11369159-11369178 | Msa0238090:CDS | 60.0% |
| !! | GGAAAGAAAGGTGGTGGCGG+TGG | + | chr2_2:11369153-11369172 | Msa0238090:CDS | 60.0% |
| !! | AAGAAAGGTGGTGGCGGTGG+CGG | + | chr2_2:11369237-11369256 | Msa0238090:CDS | 60.0% |
| !! | GGTGGAGGTGGTGGTAATGG+TGG | + | chr2_2:11369360-11369379 | Msa0238090:CDS | 60.0% |
| GCCAATGGGAGGAGGAGCAA+TGG | + | chr2_2:11369524-11369543 | Msa0238090:CDS | 60.0% | |
| CCCATTGCTCCTCCTCCCAT+TGG | - | chr2_2:11369528-11369547 | None:intergenic | 60.0% | |
| GCCAGCTGTTCAAGGCCTAC+CGG | + | chr2_2:11369587-11369606 | Msa0238090:CDS | 60.0% | |
| CTACCGGCAGCTGCGATGAA+CGG | + | chr2_2:11369603-11369622 | Msa0238090:CDS | 60.0% | |
| !! | GGCGGTGTCAGTGGTGGATA+TGG | + | chr2_2:11369636-11369655 | Msa0238090:CDS | 60.0% |
| GGAGGGTAGCTATAAGGCGG+AGG | - | chr2_2:11369816-11369835 | None:intergenic | 60.0% | |
| GCCGGTAGGCCTTGAACAGC+TGG | - | chr2_2:11369591-11369610 | None:intergenic | 65.0% | |
| CGTTCATCGCAGCTGCCGGT+AGG | - | chr2_2:11369605-11369624 | None:intergenic | 65.0% | |
| ATGAACGGCGGTGGAGGAGG+CGG | + | chr2_2:11369618-11369637 | Msa0238090:CDS | 65.0% | |
| !! | GGTGGTGGCGGTAGTGGTGG+AGG | + | chr2_2:11369162-11369181 | Msa0238090:CDS | 70.0% |
| !! | AAAGGTGGTGGCGGTGGCGG+TGG | + | chr2_2:11369240-11369259 | Msa0238090:CDS | 70.0% |
| CCGCCGTTCATCGCAGCTGC+CGG | - | chr2_2:11369609-11369628 | None:intergenic | 70.0% | |
| CCGGCAGCTGCGATGAACGG+CGG | + | chr2_2:11369606-11369625 | Msa0238090:CDS | 70.0% | |
| GCAGCTGCGATGAACGGCGG+TGG | + | chr2_2:11369609-11369628 | Msa0238090:CDS | 70.0% | |
| GCTGCGATGAACGGCGGTGG+AGG | + | chr2_2:11369612-11369631 | Msa0238090:CDS | 70.0% | |
| GCGATGAACGGCGGTGGAGG+AGG | + | chr2_2:11369615-11369634 | Msa0238090:CDS | 70.0% | |
| ! | GGTGGAGGAGGCGGTGTCAG+TGG | + | chr2_2:11369627-11369646 | Msa0238090:CDS | 70.0% |
| ! | GGAGGAGGCGGTGTCAGTGG+TGG | + | chr2_2:11369630-11369649 | Msa0238090:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11367242 | 11370233 | 11367242 | ID=Msa0238090;Name=Msa0238090 |
| chr2_2 | mRNA | 11367242 | 11370233 | 11367242 | ID=Msa0238090-mRNA-1;Parent=Msa0238090;Name=Msa0238090-mRNA-1;_AED=0.21;_eAED=0.21;_QI=333|1|1|1|1|1|3|322|502 |
| chr2_2 | exon | 11367242 | 11367604 | 11367242 | ID=Msa0238090-mRNA-1:exon:4929;Parent=Msa0238090-mRNA-1 |
| chr2_2 | exon | 11367820 | 11367895 | 11367820 | ID=Msa0238090-mRNA-1:exon:4930;Parent=Msa0238090-mRNA-1 |
| chr2_2 | exon | 11368509 | 11370233 | 11368509 | ID=Msa0238090-mRNA-1:exon:4931;Parent=Msa0238090-mRNA-1 |
| chr2_2 | five_prime_UTR | 11367242 | 11367574 | 11367242 | ID=Msa0238090-mRNA-1:five_prime_utr;Parent=Msa0238090-mRNA-1 |
| chr2_2 | CDS | 11367575 | 11367604 | 11367575 | ID=Msa0238090-mRNA-1:cds;Parent=Msa0238090-mRNA-1 |
| chr2_2 | CDS | 11367820 | 11367895 | 11367820 | ID=Msa0238090-mRNA-1:cds;Parent=Msa0238090-mRNA-1 |
| chr2_2 | CDS | 11368509 | 11369911 | 11368509 | ID=Msa0238090-mRNA-1:cds;Parent=Msa0238090-mRNA-1 |
| chr2_2 | three_prime_UTR | 11369912 | 11370233 | 11369912 | ID=Msa0238090-mRNA-1:three_prime_utr;Parent=Msa0238090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
