Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449930 | sp|A0A1P8B0B7|IQD29_ARATH | 51.485 | 101 | 48 | 1 | 475 | 574 | 485 | 585 | 2.85e-20 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449930 | G7KB25 | 86.159 | 578 | 42 | 4 | 1 | 576 | 174 | 715 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa1449930 | -0.841300 | 5.166248e-58 | -8.615850e-47 |
| Msa0032960 | Msa1449930 | -0.813629 | 2.323142e-51 | -8.615850e-47 |
| Msa0040690 | Msa1449930 | 0.800353 | 1.499530e-48 | -8.615850e-47 |
| Msa0048180 | Msa1449930 | 0.816905 | 4.344968e-52 | -8.615850e-47 |
| Msa0052610 | Msa1449930 | 0.800831 | 1.198125e-48 | -8.615850e-47 |
| Msa0081520 | Msa1449930 | 0.876324 | 1.528617e-68 | -8.615850e-47 |
| Msa0093850 | Msa1449930 | 0.823337 | 1.462717e-53 | -8.615850e-47 |
| Msa0115160 | Msa1449930 | 0.808901 | 2.466729e-50 | -8.615850e-47 |
| Msa1348090 | Msa1449930 | 0.820250 | 7.575827e-53 | -8.615850e-47 |
| Msa1356830 | Msa1449930 | 0.850498 | 1.633657e-60 | -8.615850e-47 |
| Msa1369150 | Msa1449930 | 0.834429 | 3.013295e-56 | -8.615850e-47 |
| Msa1410440 | Msa1449930 | 0.803826 | 2.895673e-49 | -8.615850e-47 |
| Msa1414170 | Msa1449930 | 0.815925 | 7.202216e-52 | -8.615850e-47 |
| Msa1418090 | Msa1449930 | 0.837537 | 4.903878e-57 | -8.615850e-47 |
| Msa1437940 | Msa1449930 | 0.870181 | 1.770878e-66 | -8.615850e-47 |
| Msa1440880 | Msa1449930 | 0.801430 | 9.037117e-49 | -8.615850e-47 |
| Msa1440960 | Msa1449930 | 0.810803 | 9.611172e-51 | -8.615850e-47 |
| Msa1443300 | Msa1449930 | 0.810801 | 9.620223e-51 | -8.615850e-47 |
| Msa1446810 | Msa1449930 | 0.807724 | 4.394221e-50 | -8.615850e-47 |
| Msa0620990 | Msa1449930 | 0.800221 | 1.595407e-48 | -8.615850e-47 |
| Msa0623900 | Msa1449930 | 0.832060 | 1.172260e-55 | -8.615850e-47 |
| Msa0623910 | Msa1449930 | 0.840528 | 8.234783e-58 | -8.615850e-47 |
| Msa0626450 | Msa1449930 | 0.822568 | 2.209128e-53 | -8.615850e-47 |
| Msa0626490 | Msa1449930 | 0.825429 | 4.711458e-54 | -8.615850e-47 |
| Msa0631250 | Msa1449930 | 0.814966 | 1.176741e-51 | -8.615850e-47 |
| Msa0638480 | Msa1449930 | 0.821754 | 3.413306e-53 | -8.615850e-47 |
| Msa0641210 | Msa1449930 | 0.811668 | 6.240945e-51 | -8.615850e-47 |
| Msa0643300 | Msa1449930 | 0.808983 | 2.369084e-50 | -8.615850e-47 |
| Msa0660370 | Msa1449930 | 0.803734 | 3.025805e-49 | -8.615850e-47 |
| Msa0661790 | Msa1449930 | 0.811530 | 6.687259e-51 | -8.615850e-47 |
| Msa0664600 | Msa1449930 | 0.818113 | 2.321910e-52 | -8.615850e-47 |
| Msa0669520 | Msa1449930 | 0.838538 | 2.709211e-57 | -8.615850e-47 |
| Msa0681260 | Msa1449930 | 0.846790 | 1.740977e-59 | -8.615850e-47 |
| Msa0681280 | Msa1449930 | 0.853435 | 2.393894e-61 | -8.615850e-47 |
| Msa0683570 | Msa1449930 | 0.824557 | 7.565490e-54 | -8.615850e-47 |
| Msa0709780 | Msa1449930 | 0.802370 | 5.792817e-49 | -8.615850e-47 |
| Msa0724910 | Msa1449930 | 0.915935 | 3.254210e-85 | -8.615850e-47 |
| Msa0726090 | Msa1449930 | 0.800071 | 1.711302e-48 | -8.615850e-47 |
| Msa0727640 | Msa1449930 | 0.803291 | 3.738333e-49 | -8.615850e-47 |
| Msa0738040 | Msa1449930 | 0.827367 | 1.626856e-54 | -8.615850e-47 |
| Msa0742740 | Msa1449930 | 0.826584 | 2.504082e-54 | -8.615850e-47 |
| Msa0749230 | Msa1449930 | 0.829594 | 4.716457e-55 | -8.615850e-47 |
| Msa0765240 | Msa1449930 | 0.852071 | 5.869806e-61 | -8.615850e-47 |
| Msa0768990 | Msa1449930 | 0.815101 | 1.098240e-51 | -8.615850e-47 |
| Msa0788770 | Msa1449930 | 0.805357 | 1.388002e-49 | -8.615850e-47 |
| Msa0790400 | Msa1449930 | 0.804530 | 2.066427e-49 | -8.615850e-47 |
| Msa0819420 | Msa1449930 | 0.823176 | 1.594372e-53 | -8.615850e-47 |
| Msa0823820 | Msa1449930 | 0.830507 | 2.824882e-55 | -8.615850e-47 |
| Msa0134180 | Msa1449930 | 0.812143 | 4.916445e-51 | -8.615850e-47 |
| Msa0134610 | Msa1449930 | 0.832949 | 7.058985e-56 | -8.615850e-47 |
| Msa0136650 | Msa1449930 | 0.826903 | 2.100546e-54 | -8.615850e-47 |
| Msa0138920 | Msa1449930 | 0.830975 | 2.168899e-55 | -8.615850e-47 |
| Msa0168480 | Msa1449930 | 0.808760 | 2.643933e-50 | -8.615850e-47 |
| Msa0173890 | Msa1449930 | 0.886987 | 2.118841e-72 | -8.615850e-47 |
| Msa0174450 | Msa1449930 | 0.824133 | 9.518672e-54 | -8.615850e-47 |
| Msa0180930 | Msa1449930 | 0.826297 | 2.930668e-54 | -8.615850e-47 |
| Msa0188690 | Msa1449930 | 0.807381 | 5.196772e-50 | -8.615850e-47 |
| Msa0196190 | Msa1449930 | 0.845734 | 3.376050e-59 | -8.615850e-47 |
| Msa0206840 | Msa1449930 | 0.837771 | 4.269562e-57 | -8.615850e-47 |
| Msa0222560 | Msa1449930 | 0.816779 | 4.637121e-52 | -8.615850e-47 |
| Msa0225740 | Msa1449930 | 0.800246 | 1.576966e-48 | -8.615850e-47 |
| Msa0238090 | Msa1449930 | 0.811594 | 6.474030e-51 | -8.615850e-47 |
| Msa1232710 | Msa1449930 | 0.826586 | 2.500976e-54 | -8.615850e-47 |
| Msa1252190 | Msa1449930 | 0.817019 | 4.095779e-52 | -8.615850e-47 |
| Msa1253550 | Msa1449930 | 0.806149 | 9.465570e-50 | -8.615850e-47 |
| Msa1258710 | Msa1449930 | 0.808919 | 2.444727e-50 | -8.615850e-47 |
| Msa1266060 | Msa1449930 | 0.802573 | 5.261382e-49 | -8.615850e-47 |
| Msa1292830 | Msa1449930 | 0.819456 | 1.150611e-52 | -8.615850e-47 |
| Msa1306640 | Msa1449930 | 0.804108 | 2.529906e-49 | -8.615850e-47 |
| Msa1313300 | Msa1449930 | 0.828581 | 8.301362e-55 | -8.615850e-47 |
| Msa1333560 | Msa1449930 | 0.862175 | 6.104112e-64 | -8.615850e-47 |
| Msa0369450 | Msa1449930 | 0.806252 | 9.001024e-50 | -8.615850e-47 |
| Msa0375640 | Msa1449930 | 0.814573 | 1.438531e-51 | -8.615850e-47 |
| Msa0378720 | Msa1449930 | 0.812683 | 3.747978e-51 | -8.615850e-47 |
| Msa0380620 | Msa1449930 | 0.810005 | 1.429346e-50 | -8.615850e-47 |
| Msa0386850 | Msa1449930 | 0.805411 | 1.352631e-49 | -8.615850e-47 |
| Msa0405710 | Msa1449930 | 0.829653 | 4.564184e-55 | -8.615850e-47 |
| Msa0424160 | Msa1449930 | 0.821573 | 3.758614e-53 | -8.615850e-47 |
| Msa0430260 | Msa1449930 | 0.840092 | 1.070730e-57 | -8.615850e-47 |
| Msa0434920 | Msa1449930 | 0.800833 | 1.197416e-48 | -8.615850e-47 |
| Msa0435370 | Msa1449930 | 0.820167 | 7.915420e-53 | -8.615850e-47 |
| Msa0435420 | Msa1449930 | 0.847537 | 1.086034e-59 | -8.615850e-47 |
| Msa0435570 | Msa1449930 | 0.829560 | 4.807038e-55 | -8.615850e-47 |
| Msa0443390 | Msa1449930 | 0.800125 | 1.669051e-48 | -8.615850e-47 |
| Msa0474730 | Msa1449930 | 0.803600 | 3.227079e-49 | -8.615850e-47 |
| Msa0475790 | Msa1449930 | 0.830353 | 3.080786e-55 | -8.615850e-47 |
| Msa0981320 | Msa1449930 | 0.830534 | 2.781364e-55 | -8.615850e-47 |
| Msa1019260 | Msa1449930 | 0.806221 | 9.138222e-50 | -8.615850e-47 |
| Msa1020510 | Msa1449930 | 0.805292 | 1.432580e-49 | -8.615850e-47 |
| Msa1020670 | Msa1449930 | 0.809899 | 1.506399e-50 | -8.615850e-47 |
| Msa1034860 | Msa1449930 | 0.806241 | 9.053115e-50 | -8.615850e-47 |
| Msa1037640 | Msa1449930 | 0.816106 | 6.561797e-52 | -8.615850e-47 |
| Msa1045140 | Msa1449930 | 0.804598 | 2.000051e-49 | -8.615850e-47 |
| Msa1072940 | Msa1449930 | 0.810129 | 1.344020e-50 | -8.615850e-47 |
| Msa1079230 | Msa1449930 | 0.827581 | 1.445580e-54 | -8.615850e-47 |
| Msa1096970 | Msa1449930 | 0.807144 | 5.835443e-50 | -8.615850e-47 |
| Msa1104140 | Msa1449930 | 0.809483 | 1.850329e-50 | -8.615850e-47 |
| Msa0249540 | Msa1449930 | 0.846774 | 1.758505e-59 | -8.615850e-47 |
| Msa0255090 | Msa1449930 | 0.835108 | 2.032540e-56 | -8.615850e-47 |
| Msa0259380 | Msa1449930 | 0.831173 | 1.939536e-55 | -8.615850e-47 |
| Msa0263080 | Msa1449930 | 0.801602 | 8.334111e-49 | -8.615850e-47 |
| Msa0275080 | Msa1449930 | 0.822129 | 2.794026e-53 | -8.615850e-47 |
| Msa0292400 | Msa1449930 | 0.839490 | 1.535964e-57 | -8.615850e-47 |
| Msa0294160 | Msa1449930 | 0.842847 | 2.013133e-58 | -8.615850e-47 |
| Msa0296250 | Msa1449930 | 0.804603 | 1.995181e-49 | -8.615850e-47 |
| Msa0307270 | Msa1449930 | 0.824059 | 9.908389e-54 | -8.615850e-47 |
| Msa0307850 | Msa1449930 | 0.811529 | 6.690707e-51 | -8.615850e-47 |
| Msa0315980 | Msa1449930 | 0.844493 | 7.305076e-59 | -8.615850e-47 |
| Msa0326590 | Msa1449930 | 0.808638 | 2.807229e-50 | -8.615850e-47 |
| Msa0335800 | Msa1449930 | 0.816777 | 4.643615e-52 | -8.615850e-47 |
| Msa0339500 | Msa1449930 | 0.800930 | 1.144032e-48 | -8.615850e-47 |
| Msa0341690 | Msa1449930 | 0.815460 | 9.140897e-52 | -8.615850e-47 |
| Msa0357990 | Msa1449930 | 0.816894 | 4.369668e-52 | -8.615850e-47 |
| Msa1115770 | Msa1449930 | 0.815845 | 7.503750e-52 | -8.615850e-47 |
| Msa1119070 | Msa1449930 | 0.809172 | 2.157616e-50 | -8.615850e-47 |
| Msa1119170 | Msa1449930 | 0.803153 | 3.992952e-49 | -8.615850e-47 |
| Msa1124110 | Msa1449930 | 0.853041 | 3.104493e-61 | -8.615850e-47 |
| Msa1127590 | Msa1449930 | 0.819253 | 1.279872e-52 | -8.615850e-47 |
| Msa1143650 | Msa1449930 | 0.828096 | 1.087252e-54 | -8.615850e-47 |
| Msa1160920 | Msa1449930 | 0.815600 | 8.508096e-52 | -8.615850e-47 |
| Msa1168950 | Msa1449930 | 0.835477 | 1.640510e-56 | -8.615850e-47 |
| Msa1169040 | Msa1449930 | 0.840179 | 1.016177e-57 | -8.615850e-47 |
| Msa1173330 | Msa1449930 | 0.805484 | 1.305277e-49 | -8.615850e-47 |
| Msa1174780 | Msa1449930 | 0.806705 | 7.223163e-50 | -8.615850e-47 |
| Msa1218140 | Msa1449930 | 0.803564 | 3.281861e-49 | -8.615850e-47 |
| Msa0484150 | Msa1449930 | 0.822676 | 2.085978e-53 | -8.615850e-47 |
| Msa0487500 | Msa1449930 | 0.801524 | 8.647230e-49 | -8.615850e-47 |
| Msa0500380 | Msa1449930 | 0.846238 | 2.462314e-59 | -8.615850e-47 |
| Msa0515800 | Msa1449930 | 0.812528 | 4.050929e-51 | -8.615850e-47 |
| Msa0518030 | Msa1449930 | 0.801083 | 1.064233e-48 | -8.615850e-47 |
| Msa0527020 | Msa1449930 | 0.824423 | 8.137557e-54 | -8.615850e-47 |
| Msa0527800 | Msa1449930 | 0.803749 | 3.005033e-49 | -8.615850e-47 |
| Msa0532070 | Msa1449930 | 0.814963 | 1.178635e-51 | -8.615850e-47 |
| Msa0534750 | Msa1449930 | 0.800889 | 1.165928e-48 | -8.615850e-47 |
| Msa0546110 | Msa1449930 | 0.821311 | 4.318355e-53 | -8.615850e-47 |
| Msa0591170 | Msa1449930 | 0.818186 | 2.235293e-52 | -8.615850e-47 |
| Msa0855830 | Msa1449930 | 0.801743 | 7.795834e-49 | -8.615850e-47 |
| Msa0861510 | Msa1449930 | 0.800796 | 1.218152e-48 | -8.615850e-47 |
| Msa0861600 | Msa1449930 | 0.800428 | 1.447750e-48 | -8.615850e-47 |
| Msa0863010 | Msa1449930 | 0.828588 | 8.270967e-55 | -8.615850e-47 |
| Msa0867060 | Msa1449930 | 0.805063 | 1.599346e-49 | -8.615850e-47 |
| Msa0869780 | Msa1449930 | 0.803790 | 2.946736e-49 | -8.615850e-47 |
| Msa0872670 | Msa1449930 | 0.806869 | 6.669622e-50 | -8.615850e-47 |
| Msa0880270 | Msa1449930 | 0.810294 | 1.238338e-50 | -8.615850e-47 |
| Msa0945110 | Msa1449930 | 0.824284 | 8.774427e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449930 | MtrunA17_Chr5g0416161 | 86.159 | 578 | 42 | 4 | 1 | 576 | 174 | 715 | 0.0 | 914 |
| Msa1449930 | MtrunA17_Chr4g0060381 | 30.312 | 353 | 196 | 15 | 1 | 324 | 155 | 486 | 9.29e-19 | 90.1 |
| Msa1449930 | MtrunA17_Chr4g0060381 | 50.495 | 101 | 48 | 1 | 475 | 575 | 475 | 573 | 5.47e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449930 | AT2G02790.2 | 51.485 | 101 | 48 | 1 | 475 | 574 | 485 | 585 | 2.90e-21 | 98.2 |
| Msa1449930 | AT2G02790.3 | 51.485 | 101 | 48 | 1 | 475 | 574 | 485 | 585 | 2.90e-21 | 98.2 |
| Msa1449930 | AT2G02790.1 | 51.485 | 101 | 48 | 1 | 475 | 574 | 485 | 585 | 5.74e-21 | 97.4 |
| Msa1449930 | AT1G14380.1 | 48.113 | 106 | 50 | 3 | 474 | 576 | 551 | 654 | 1.15e-17 | 87.0 |
| Msa1449930 | AT1G14380.3 | 48.113 | 106 | 50 | 3 | 474 | 576 | 551 | 654 | 1.15e-17 | 87.0 |
| Msa1449930 | AT1G14380.4 | 48.113 | 106 | 50 | 3 | 474 | 576 | 551 | 654 | 1.15e-17 | 87.0 |
| Msa1449930 | AT1G14380.6 | 48.113 | 106 | 50 | 3 | 474 | 576 | 489 | 592 | 1.53e-17 | 86.7 |
| Msa1449930 | AT1G14380.5 | 48.113 | 106 | 50 | 3 | 474 | 576 | 489 | 592 | 1.53e-17 | 86.7 |
| Msa1449930 | AT1G14380.2 | 48.113 | 106 | 50 | 3 | 474 | 576 | 489 | 592 | 1.53e-17 | 86.7 |
| Msa1449930 | AT1G14380.7 | 48.113 | 106 | 50 | 3 | 474 | 576 | 461 | 564 | 1.63e-17 | 86.3 |
| Msa1449930 | AT1G18840.1 | 35.948 | 153 | 76 | 4 | 1 | 135 | 164 | 312 | 2.53e-16 | 82.8 |
| Msa1449930 | AT1G18840.3 | 35.948 | 153 | 76 | 4 | 1 | 135 | 164 | 312 | 2.53e-16 | 82.8 |
| Msa1449930 | AT1G18840.2 | 35.948 | 153 | 76 | 4 | 1 | 135 | 164 | 312 | 2.53e-16 | 82.8 |
| Msa1449930 | AT1G74690.1 | 35.870 | 184 | 87 | 10 | 1 | 162 | 168 | 342 | 2.18e-14 | 76.6 |
| Msa1449930 | AT1G74690.1 | 46.512 | 86 | 45 | 1 | 491 | 575 | 491 | 576 | 6.14e-11 | 65.5 |
Find 118 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTTTCTTCTTCAATTT+TGG | 0.139807 | tig0032747:+37235 | Msa1449930:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | tig0032747:+36319 | Msa1449930:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | tig0032747:+36547 | Msa1449930:intergenic |
| CTTTCACGGCAGGTGATTTC+CGG | 0.192974 | tig0032747:+37173 | Msa1449930:intergenic |
| TCTGAGACCTTTCTCTTCTT+TGG | 0.196588 | tig0032747:+36241 | Msa1449930:intergenic |
| GTGACAATGCCGATAGATTT+TGG | 0.208422 | tig0032747:+38087 | Msa1449930:intergenic |
| CTGCCATTCAAGCTCTTCTT+TGG | 0.209892 | tig0032747:+36266 | Msa1449930:intergenic |
| TCCAAGACTGTTCTCTTCTT+TGG | 0.245150 | tig0032747:+36700 | Msa1449930:intergenic |
| CCACCATTTGAGCTCTTCTT+TGG | 0.254127 | tig0032747:+36803 | Msa1449930:intergenic |
| GGCTTATCGTTGTTCTCTTC+TGG | 0.254394 | tig0032747:+36668 | Msa1449930:intergenic |
| GTTGGACAAGGTCAAGCTTT+TGG | 0.259433 | tig0032747:-37267 | Msa1449930:CDS |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.283139 | tig0032747:+36494 | Msa1449930:intergenic |
| CCGCCACTTACGCTCTTCTT+TGG | 0.286225 | tig0032747:+36572 | Msa1449930:intergenic |
| AATGTTAGACGTTCTGATAT+TGG | 0.287099 | tig0032747:-38399 | Msa1449930:CDS |
| CTGTCATTTAAGCTCTTCTT+TGG | 0.299637 | tig0032747:+36725 | Msa1449930:intergenic |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.309644 | tig0032747:+36419 | Msa1449930:intergenic |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.309644 | tig0032747:+36647 | Msa1449930:intergenic |
| CCGCCACTTAAGCTCTTCTT+TGG | 0.309857 | tig0032747:+36344 | Msa1449930:intergenic |
| ATGTTAGACGTTCTGATATT+GGG | 0.320597 | tig0032747:-38398 | Msa1449930:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | tig0032747:-36422 | Msa1449930:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | tig0032747:-36650 | Msa1449930:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.327940 | tig0032747:-36497 | Msa1449930:CDS |
| CTGAAAAGGCACAAGTTAAA+AGG | 0.331400 | tig0032747:-37201 | Msa1449930:CDS |
| CAGGCAGTGAAGCTCTTCTT+TGG | 0.344810 | tig0032747:+36084 | Msa1449930:intergenic |
| GCTGATGAGGGCTCAAGTTC+TGG | 0.345997 | tig0032747:-37151 | Msa1449930:CDS |
| GCCATATAACTCGGCACTCT+TGG | 0.374824 | tig0032747:+36017 | Msa1449930:intergenic |
| TCCAAGAGTGCCGAGTTATA+TGG | 0.386156 | tig0032747:-36018 | Msa1449930:CDS |
| AAGGTAGGAGATGAAGAAAT+AGG | 0.392384 | tig0032747:-36155 | Msa1449930:CDS |
| AAAGGATTCAAATCACTCAT+TGG | 0.395796 | tig0032747:-37101 | Msa1449930:CDS |
| ATGATATCAGTAGCAAATCT+TGG | 0.399401 | tig0032747:+35951 | Msa1449930:intergenic |
| TGATCTTGGAGAACCTTACT+TGG | 0.410168 | tig0032747:-37308 | Msa1449930:CDS |
| GTCAAAGAAGAGAAAGATCT+TGG | 0.414222 | tig0032747:-36395 | Msa1449930:CDS |
| TGAGCCCTCATCAGCTTTCA+CGG | 0.420821 | tig0032747:+37159 | Msa1449930:intergenic |
| TCTTCACTTAACAGCAAGTC+AGG | 0.421600 | tig0032747:-35891 | Msa1449930:CDS |
| TGATATCAGTAGCAAATCTT+GGG | 0.424517 | tig0032747:+35952 | Msa1449930:intergenic |
| GTCAAAGAAGAGAAAGGTCT+TGG | 0.427941 | tig0032747:-36779 | Msa1449930:CDS |
| ATAAATCTCTGTCATCTTCA+AGG | 0.431656 | tig0032747:-35806 | Msa1449930:CDS |
| CTATCGCTAAATAGTGATCT+TGG | 0.432037 | tig0032747:-37322 | Msa1449930:CDS |
| TTCTGTCCAAGACCTTTCTC+AGG | 0.432297 | tig0032747:+36851 | Msa1449930:intergenic |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | tig0032747:-36320 | Msa1449930:CDS |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | tig0032747:-36548 | Msa1449930:CDS |
| TCTTGCCCTGAGAAAGGTCT+TGG | 0.436010 | tig0032747:-36857 | Msa1449930:CDS |
| GATGTTTCAGAGCAGGGGCC+AGG | 0.436095 | tig0032747:-36929 | Msa1449930:CDS |
| TGACTCGGTCTCGGCTGAAA+AGG | 0.450561 | tig0032747:-37215 | Msa1449930:CDS |
| TCACTCATTGGTTTCAGCTC+AGG | 0.453397 | tig0032747:-37089 | Msa1449930:CDS |
| CTTCGAAGTGGCTTGACCGT+TGG | 0.453863 | tig0032747:-37285 | Msa1449930:CDS |
| AGAAAAGAAAACACAGCTCT+AGG | 0.454796 | tig0032747:-36976 | Msa1449930:CDS |
| CTGATAAATTTGAGCGGAAG+AGG | 0.454871 | tig0032747:-35843 | Msa1449930:CDS |
| TTCAAAGAAGAGAAAGATGT+TGG | 0.458543 | tig0032747:-36470 | Msa1449930:CDS |
| AAGCCAAAGAAGAGCTCAAA+TGG | 0.466804 | tig0032747:-36806 | Msa1449930:CDS |
| CAGACAGAAAGCACTAGAAC+AGG | 0.470431 | tig0032747:-36222 | Msa1449930:CDS |
| TTTCACGGCAGGTGATTTCC+GGG | 0.473542 | tig0032747:+37174 | Msa1449930:intergenic |
| CTCTGTCATCTTCAAGGGAC+GGG | 0.476009 | tig0032747:-35800 | Msa1449930:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | tig0032747:-36293 | Msa1449930:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | tig0032747:-36521 | Msa1449930:CDS |
| CCCTCATCAGCTTTCACGGC+AGG | 0.480653 | tig0032747:+37163 | Msa1449930:intergenic |
| AAGCCAAAGAAGAGCTTGAA+TGG | 0.481386 | tig0032747:-36269 | Msa1449930:CDS |
| TCTTGATCATTAAAATTAGC+AGG | 0.485135 | tig0032747:+36065 | Msa1449930:intergenic |
| AGATCACTATTTAGCGATAG+AGG | 0.485199 | tig0032747:+37325 | Msa1449930:intergenic |
| GGGCAAGACTCTTCTGACTT+TGG | 0.487465 | tig0032747:+36872 | Msa1449930:intergenic |
| AGCCACTTCGAAGCCAAGTA+AGG | 0.490411 | tig0032747:+37295 | Msa1449930:intergenic |
| GAAGAAACCTGACTCGGTCT+CGG | 0.494688 | tig0032747:-37224 | Msa1449930:CDS |
| TGTTACTGATGTTTCAGAGC+AGG | 0.494693 | tig0032747:-36936 | Msa1449930:CDS |
| AATCAGCAAAAGCTAGGCTA+AGG | 0.506190 | tig0032747:-35986 | Msa1449930:CDS |
| ACGTTCTGATATTGGGCTTG+AGG | 0.509685 | tig0032747:-38391 | Msa1449930:CDS |
| ACCAAAGAAGAGAACAGTCT+TGG | 0.521726 | tig0032747:-36701 | Msa1449930:CDS |
| GAAGAGTCTTGCCCTGAGAA+AGG | 0.521918 | tig0032747:-36863 | Msa1449930:CDS |
| AAGCCAAAGAAGAGCTTAAG+TGG | 0.524060 | tig0032747:-36347 | Msa1449930:CDS |
| CTTACAGACTAGTGTGAAGA+AGG | 0.530864 | tig0032747:-36174 | Msa1449930:CDS |
| GTTACTGATGTTTCAGAGCA+GGG | 0.534754 | tig0032747:-36935 | Msa1449930:CDS |
| CAGACTAGTGTGAAGAAGGT+AGG | 0.543608 | tig0032747:-36170 | Msa1449930:CDS |
| TAACTCGGCACTCTTGGACT+TGG | 0.545077 | tig0032747:+36023 | Msa1449930:intergenic |
| ACTCAATGTCCAAAATCTAT+CGG | 0.549474 | tig0032747:-38096 | Msa1449930:CDS |
| GAAAAGAAAACACAGCTCTA+GGG | 0.549824 | tig0032747:-36975 | Msa1449930:CDS |
| GAGCTTAAATGGCGGTGTCA+AGG | 0.550330 | tig0032747:-36639 | Msa1449930:CDS |
| AGAAAATGCCTTTGTTCACC+AGG | 0.551079 | tig0032747:-38040 | Msa1449930:intron |
| CGACTGAATCAGCAAAAGCT+AGG | 0.556769 | tig0032747:-35992 | Msa1449930:CDS |
| TCATCTTCAAGGGACGGGAC+TGG | 0.557763 | tig0032747:-35795 | None:intergenic |
| AAGCCAAAGAAGAGCGTAAG+TGG | 0.558887 | tig0032747:-36575 | Msa1449930:CDS |
| ACCTGCCGTGAAAGCTGATG+AGG | 0.565649 | tig0032747:-37164 | Msa1449930:CDS |
| GGTGGTGTCAAAGAAGAGAA+AGG | 0.565727 | tig0032747:-36785 | Msa1449930:CDS |
| GGAGTTAGCGAAGACTTGAA+TGG | 0.567098 | tig0032747:-36134 | Msa1449930:CDS |
| ATCAGCAAAAGCTAGGCTAA+GGG | 0.567639 | tig0032747:-35985 | Msa1449930:CDS |
| AAAGCTAGGCTAAGGGGACA+AGG | 0.569700 | tig0032747:-35978 | Msa1449930:CDS |
| TAAATCTCTGTCATCTTCAA+GGG | 0.577185 | tig0032747:-35805 | Msa1449930:CDS |
| GGCAGTGCCAAAGAAGAGAA+AGG | 0.578082 | tig0032747:-36248 | Msa1449930:CDS |
| CTAGTCTGTAAGACAGCAGT+AGG | 0.581177 | tig0032747:+36185 | Msa1449930:intergenic |
| TCTGTCCAAGACCTTTCTCA+GGG | 0.589944 | tig0032747:+36852 | Msa1449930:intergenic |
| CCTGCCGTGAAAGCTGATGA+GGG | 0.596782 | tig0032747:-37163 | Msa1449930:CDS |
| AACCTTACTTGGCTTCGAAG+TGG | 0.602005 | tig0032747:-37297 | Msa1449930:CDS |
| CACAAGTTAAAAGGACTACC+CGG | 0.602610 | tig0032747:-37192 | Msa1449930:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | tig0032747:-36326 | Msa1449930:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | tig0032747:-36554 | Msa1449930:CDS |
| AGATGAAAGTGAATGCCTCC+TGG | 0.603995 | tig0032747:+35911 | Msa1449930:intergenic |
| TCTCTGTCATCTTCAAGGGA+CGG | 0.611971 | tig0032747:-35801 | Msa1449930:CDS |
| AAAAGCTTGACCTTGTCCAA+CGG | 0.615531 | tig0032747:+37269 | Msa1449930:intergenic |
| AGTGGCTTGACCGTTGGACA+AGG | 0.615551 | tig0032747:-37279 | Msa1449930:CDS |
| TTACTGATGTTTCAGAGCAG+GGG | 0.623308 | tig0032747:-36934 | Msa1449930:CDS |
| TGAGGTCCTGAAAGTTCGCA+AGG | 0.629107 | tig0032747:-38373 | Msa1449930:CDS |
| TTAGCGATAGAGGAAACGCA+TGG | 0.630241 | tig0032747:+37335 | Msa1449930:intergenic |
| TGAGCGGAAGAGGAGTTGCA+AGG | 0.632349 | tig0032747:-35833 | Msa1449930:CDS |
| TCAGCAAAAGCTAGGCTAAG+GGG | 0.647323 | tig0032747:-35984 | Msa1449930:CDS |
| AGTTCCTACCTGGTGAACAA+AGG | 0.648285 | tig0032747:+38032 | Msa1449930:intergenic |
| ATTGAAGAAGAAACCTGACT+CGG | 0.655945 | tig0032747:-37230 | Msa1449930:CDS |
| TCAGTCGGAGCCATATAACT+CGG | 0.661998 | tig0032747:+36008 | Msa1449930:intergenic |
| CCAAAGAAGAGCTCAAATGG+TGG | 0.663791 | tig0032747:-36803 | Msa1449930:CDS |
| CGGCATTGTCACATCTACAC+CGG | 0.663960 | tig0032747:-38076 | Msa1449930:CDS |
| GATATCAGTAGCAAATCTTG+GGG | 0.666334 | tig0032747:+35953 | Msa1449930:intergenic |
| GAAAAGCTGATAAATTTGAG+CGG | 0.671178 | tig0032747:-35849 | Msa1449930:CDS |
| CAGAAAGCACTAGAACAGGA+AGG | 0.674738 | tig0032747:-36218 | Msa1449930:CDS |
| TAGCGATAGAGGAAACGCAT+GGG | 0.677774 | tig0032747:+37336 | Msa1449930:intergenic |
| TGAGAAAATGAAAGAAACGA+CGG | 0.688170 | tig0032747:-36897 | Msa1449930:CDS |
| CCAAAGAAGAGCGTAAGTGG+CGG | 0.702919 | tig0032747:-36572 | Msa1449930:CDS |
| CCAAAGAAGAGCTTAAGTGG+CGG | 0.710668 | tig0032747:-36344 | Msa1449930:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.712376 | tig0032747:-36494 | Msa1449930:CDS |
| GTTAGCGAAGACTTGAATGG+CGG | 0.720405 | tig0032747:-36131 | Msa1449930:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.731508 | tig0032747:-36419 | Msa1449930:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.731508 | tig0032747:-36647 | Msa1449930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTATCATCTATAT+CGG | + | tig0032747:36213-36232 | Msa1449930:intergenic | 10.0% |
| !! | AGTATTAATTGAATTAAAGA+AGG | - | tig0032747:36375-36394 | Msa1449930:CDS | 15.0% |
| !! | TTAGTCATATTTCAGATATT+AGG | + | tig0032747:36254-36273 | Msa1449930:intergenic | 20.0% |
| !!! | GTTGATAATTTTATTGTTCA+TGG | - | tig0032747:36310-36329 | Msa1449930:CDS | 20.0% |
| !!! | ATAATTTTATTGTTCATGGA+AGG | - | tig0032747:36314-36333 | Msa1449930:CDS | 20.0% |
| !! | TATATAACAAAGACAAATTC+AGG | + | tig0032747:36438-36457 | Msa1449930:intergenic | 20.0% |
| !! | GAAATTATATGAAGAAACTT+CGG | + | tig0032747:36560-36579 | Msa1449930:intergenic | 20.0% |
| !! | TCTTCATATAATTTCAGTTA+AGG | - | tig0032747:36565-36584 | Msa1449930:CDS | 20.0% |
| !! | AATGTTATATTCGATATGAA+TGG | - | tig0032747:36691-36710 | Msa1449930:CDS | 20.0% |
| !!! | GTTTTGAAATTAAATTGTCT+TGG | - | tig0032747:36777-36796 | Msa1449930:CDS | 20.0% |
| !!! | TTTTCTCAATTTCTTTCTTT+GGG | + | tig0032747:37147-37166 | Msa1449930:intergenic | 20.0% |
| !! | ATCAACTGATAACATTTTCA+TGG | + | tig0032747:36296-36315 | Msa1449930:intergenic | 25.0% |
| ! | TTAATACTACTAGTGTTTAC+CGG | + | tig0032747:36363-36382 | Msa1449930:intergenic | 25.0% |
| !! | TGTTAAGTGAAAAGTTGTTT+TGG | - | tig0032747:36598-36617 | Msa1449930:CDS | 25.0% |
| ! | CAACTTAAAATCATAACATG+AGG | + | tig0032747:36640-36659 | Msa1449930:intergenic | 25.0% |
| ! | ATGAATGGTATAACAAAGTT+TGG | - | tig0032747:36706-36725 | Msa1449930:CDS | 25.0% |
| !! | CTTTTCTCAATTTCTTTCTT+TGG | + | tig0032747:37148-37167 | Msa1449930:intergenic | 25.0% |
| ! | TCTTGATCATTAAAATTAGC+AGG | + | tig0032747:38138-38157 | Msa1449930:intergenic | 25.0% |
| AATGTTAGACGTTCTGATAT+TGG | - | tig0032747:35818-35837 | Msa1449930:CDS | 30.0% | |
| ATGTTAGACGTTCTGATATT+GGG | - | tig0032747:35819-35838 | Msa1449930:CDS | 30.0% | |
| CAATGTACAAATCATTGCAT+TGG | + | tig0032747:35893-35912 | Msa1449930:intergenic | 30.0% | |
| AATTTCTCAGTGGAAATGTT+AGG | - | tig0032747:35922-35941 | Msa1449930:CDS | 30.0% | |
| ! | GTACATTCTTTTTGTATGAC+AGG | + | tig0032747:35978-35997 | Msa1449930:intergenic | 30.0% |
| TAGTTAGTGAAGCAATACAA+GGG | + | tig0032747:36061-36080 | Msa1449930:intergenic | 30.0% | |
| !! | TACTTCAATCTACTTTTCTC+AGG | - | tig0032747:36079-36098 | Msa1449930:CDS | 30.0% |
| ACTCAATGTCCAAAATCTAT+CGG | - | tig0032747:36104-36123 | Msa1449930:CDS | 30.0% | |
| ATTAATTAGAAGTTCCTACC+TGG | + | tig0032747:36181-36200 | Msa1449930:intergenic | 30.0% | |
| TAATACTACTAGTGTTTACC+GGG | + | tig0032747:36362-36381 | Msa1449930:intergenic | 30.0% | |
| AATCATAACATGAGGTTGAA+TGG | + | tig0032747:36632-36651 | Msa1449930:intergenic | 30.0% | |
| !!! | GCTGATTTTTTTTTTCCCTA+TGG | - | tig0032747:36733-36752 | Msa1449930:CDS | 30.0% |
| !!! | TTTTTTTCCCTATGGTTGTT+TGG | - | tig0032747:36741-36760 | Msa1449930:CDS | 30.0% |
| AACTAAACCAAACAACCATA+GGG | + | tig0032747:36751-36770 | Msa1449930:intergenic | 30.0% | |
| AAACTAAACCAAACAACCAT+AGG | + | tig0032747:36752-36771 | Msa1449930:intergenic | 30.0% | |
| !! | TTCTTCTTCAATTTTGGAAG+AGG | + | tig0032747:36962-36981 | Msa1449930:intergenic | 30.0% |
| ! | TCAGGTTTCTTCTTCAATTT+TGG | + | tig0032747:36968-36987 | Msa1449930:intergenic | 30.0% |
| ACAAAAACAACGTCCAAAAA+AGG | - | tig0032747:37081-37100 | Msa1449930:CDS | 30.0% | |
| !!! | GAGTGATTTGAATCCTTTTT+TGG | + | tig0032747:37097-37116 | Msa1449930:intergenic | 30.0% |
| AAAGGATTCAAATCACTCAT+TGG | - | tig0032747:37099-37118 | Msa1449930:CDS | 30.0% | |
| ! | TTCTTTCATTTTCTCAGAAG+AGG | + | tig0032747:37299-37318 | Msa1449930:intergenic | 30.0% |
| TGAGAAAATGAAAGAAACGA+CGG | - | tig0032747:37303-37322 | Msa1449930:CDS | 30.0% | |
| TTCAAAGAAGAGAAAGATGT+TGG | - | tig0032747:37730-37749 | Msa1449930:intron | 30.0% | |
| TGATATCAGTAGCAAATCTT+GGG | + | tig0032747:38251-38270 | Msa1449930:intergenic | 30.0% | |
| ATGATATCAGTAGCAAATCT+TGG | + | tig0032747:38252-38271 | Msa1449930:intergenic | 30.0% | |
| TAGACAAAAACAGTTTAACC+AGG | - | tig0032747:38271-38290 | Msa1449930:intron | 30.0% | |
| ! | TTATCAGCTTTTCTACTCTT+GGG | + | tig0032747:38344-38363 | Msa1449930:intergenic | 30.0% |
| ! | TTTATCAGCTTTTCTACTCT+TGG | + | tig0032747:38345-38364 | Msa1449930:intergenic | 30.0% |
| GAAAAGCTGATAAATTTGAG+CGG | - | tig0032747:38351-38370 | Msa1449930:intron | 30.0% | |
| ATAAATCTCTGTCATCTTCA+AGG | - | tig0032747:38394-38413 | Msa1449930:CDS | 30.0% | |
| TAAATCTCTGTCATCTTCAA+GGG | - | tig0032747:38395-38414 | Msa1449930:CDS | 30.0% | |
| TTCGCAAGGTAAAAGTTCTT+TGG | - | tig0032747:35858-35877 | Msa1449930:CDS | 35.0% | |
| GTATGACAGGAAAGATCTAT+TGG | + | tig0032747:35965-35984 | Msa1449930:intergenic | 35.0% | |
| GTAGTTAGTGAAGCAATACA+AGG | + | tig0032747:36062-36081 | Msa1449930:intergenic | 35.0% | |
| TTTACCGGGAGAAAAAAAAG+GGG | + | tig0032747:36348-36367 | Msa1449930:intergenic | 35.0% | |
| GTTTACCGGGAGAAAAAAAA+GGG | + | tig0032747:36349-36368 | Msa1449930:intergenic | 35.0% | |
| TGTTTACCGGGAGAAAAAAA+AGG | + | tig0032747:36350-36369 | Msa1449930:intergenic | 35.0% | |
| CAGCTGAAATGGATATCATA+TGG | + | tig0032747:36831-36850 | Msa1449930:intergenic | 35.0% | |
| AGATCACTATTTAGCGATAG+AGG | + | tig0032747:36878-36897 | Msa1449930:intergenic | 35.0% | |
| CTATCGCTAAATAGTGATCT+TGG | - | tig0032747:36878-36897 | Msa1449930:CDS | 35.0% | |
| ATTGAAGAAGAAACCTGACT+CGG | - | tig0032747:36970-36989 | Msa1449930:CDS | 35.0% | |
| ! | CTGAAAAGGCACAAGTTAAA+AGG | - | tig0032747:36999-37018 | Msa1449930:CDS | 35.0% |
| AGAAAAGAAAACACAGCTCT+AGG | - | tig0032747:37224-37243 | Msa1449930:CDS | 35.0% | |
| GAAAAGAAAACACAGCTCTA+GGG | - | tig0032747:37225-37244 | Msa1449930:CDS | 35.0% | |
| ! | CTGTCATTTAAGCTCTTCTT+TGG | + | tig0032747:37478-37497 | Msa1449930:intergenic | 35.0% |
| ! | TTGTTCTCTTCTGGTGTTTT+CGG | + | tig0032747:37526-37545 | Msa1449930:intergenic | 35.0% |
| AAGCCAAAGAAGAGCTTAAA+TGG | - | tig0032747:37472-37491 | Msa1449930:intron | 35.0% | |
| GTCAAGGAAGAGAAAAATCT+TGG | - | tig0032747:37577-37596 | Msa1449930:intron | 35.0% | |
| AAAGCGCAAGAAGAGAATAA+TGG | - | tig0032747:37679-37698 | Msa1449930:intron | 35.0% | |
| AAGCCAAAGAAGAGCTTAAA+TGG | - | tig0032747:37472-37491 | Msa1449930:intron | 35.0% | |
| AAGCCAAAGAAGAGCTTAAA+TGG | - | tig0032747:37472-37491 | Msa1449930:intron | 35.0% | |
| GTCAAAGAAGAGAAAGATCT+TGG | - | tig0032747:37805-37824 | Msa1449930:intron | 35.0% | |
| AAAGCGCAAGAAGAGAATAA+TGG | - | tig0032747:37679-37698 | Msa1449930:intron | 35.0% | |
| AAGGTAGGAGATGAAGAAAT+AGG | - | tig0032747:38045-38064 | Msa1449930:CDS | 35.0% | |
| GATATCAGTAGCAAATCTTG+GGG | + | tig0032747:38250-38269 | Msa1449930:intergenic | 35.0% | |
| ACAAAAACAGTTTAACCAGG+AGG | - | tig0032747:38274-38293 | Msa1449930:intron | 35.0% | |
| ! | TATCAGCTTTTCTACTCTTG+GGG | + | tig0032747:38343-38362 | Msa1449930:intergenic | 35.0% |
| ! | CTTTTACCTTGCGAACTTTC+AGG | + | tig0032747:35853-35872 | Msa1449930:intergenic | 40.0% |
| GTTCTCTCTGAATTTCTCAG+TGG | - | tig0032747:35912-35931 | Msa1449930:CDS | 40.0% | |
| GACTCATAGAACATACTCTG+CGG | - | tig0032747:36002-36021 | Msa1449930:CDS | 40.0% | |
| AGTGAAGCAATACAAGGGTA+TGG | + | tig0032747:36056-36075 | Msa1449930:intergenic | 40.0% | |
| ! | GTGACAATGCCGATAGATTT+TGG | + | tig0032747:36116-36135 | Msa1449930:intergenic | 40.0% |
| AGAAAATGCCTTTGTTCACC+AGG | - | tig0032747:36160-36179 | Msa1449930:CDS | 40.0% | |
| TTACCGGGAGAAAAAAAAGG+GGG | + | tig0032747:36347-36366 | Msa1449930:intergenic | 40.0% | |
| ATGATATCCATTTCAGCTGC+TGG | - | tig0032747:36832-36851 | Msa1449930:CDS | 40.0% | |
| TGATCTTGGAGAACCTTACT+TGG | - | tig0032747:36892-36911 | Msa1449930:CDS | 40.0% | |
| AAAAGCTTGACCTTGTCCAA+CGG | + | tig0032747:36934-36953 | Msa1449930:intergenic | 40.0% | |
| ! | TTGGACAAGGTCAAGCTTTT+GGG | - | tig0032747:36934-36953 | Msa1449930:CDS | 40.0% |
| CACAAGTTAAAAGGACTACC+CGG | - | tig0032747:37008-37027 | Msa1449930:CDS | 40.0% | |
| TGTTACTGATGTTTCAGAGC+AGG | - | tig0032747:37264-37283 | Msa1449930:CDS | 40.0% | |
| GTTACTGATGTTTCAGAGCA+GGG | - | tig0032747:37265-37284 | Msa1449930:CDS | 40.0% | |
| TTACTGATGTTTCAGAGCAG+GGG | - | tig0032747:37266-37285 | Msa1449930:CDS | 40.0% | |
| ! | ATTTTCTCAGAAGAGGAACC+TGG | + | tig0032747:37292-37311 | Msa1449930:intergenic | 40.0% |
| AAGCCAAAGAAGAGCTCAAA+TGG | - | tig0032747:37394-37413 | Msa1449930:intron | 40.0% | |
| GTCAAAGAAGAGAAAGGTCT+TGG | - | tig0032747:37421-37440 | Msa1449930:intron | 40.0% | |
| ACCAAAGAAGAGAACAGTCT+TGG | - | tig0032747:37499-37518 | Msa1449930:intron | 40.0% | |
| TCCAAGACTGTTCTCTTCTT+TGG | + | tig0032747:37503-37522 | Msa1449930:intergenic | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | - | tig0032747:37553-37572 | Msa1449930:intron | 40.0% | |
| TCCAAGACCTTTCTCTTCTT+TGG | + | tig0032747:37425-37444 | Msa1449930:intergenic | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | - | tig0032747:37553-37572 | Msa1449930:intron | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | - | tig0032747:37553-37572 | Msa1449930:intron | 40.0% | |
| AAGCCAAAGAAGAGCTTAAG+TGG | - | tig0032747:37853-37872 | Msa1449930:intron | 40.0% | |
| TCCAAGACCTTTCTCTTCTT+TGG | + | tig0032747:37425-37444 | Msa1449930:intergenic | 40.0% | |
| AAGCCAAAGAAGAGCTTGAA+TGG | - | tig0032747:37931-37950 | Msa1449930:intron | 40.0% | |
| ! | TCTGAGACCTTTCTCTTCTT+TGG | + | tig0032747:37962-37981 | Msa1449930:intergenic | 40.0% |
| CTTACAGACTAGTGTGAAGA+AGG | - | tig0032747:38026-38045 | Msa1449930:intron | 40.0% | |
| !!! | CTAGCTTTTGCTGATTCAGT+CGG | + | tig0032747:38210-38229 | Msa1449930:intergenic | 40.0% |
| AATCAGCAAAAGCTAGGCTA+AGG | - | tig0032747:38214-38233 | Msa1449930:intron | 40.0% | |
| ATCAGCAAAAGCTAGGCTAA+GGG | - | tig0032747:38215-38234 | Msa1449930:intron | 40.0% | |
| TCTTCACTTAACAGCAAGTC+AGG | - | tig0032747:38309-38328 | Msa1449930:intron | 40.0% | |
| CTGATAAATTTGAGCGGAAG+AGG | - | tig0032747:38357-38376 | Msa1449930:CDS | 40.0% | |
| ACGTTCTGATATTGGGCTTG+AGG | - | tig0032747:35826-35845 | Msa1449930:CDS | 45.0% | |
| ! | TTTTCTGACAGCTTGTCTGC+CGG | + | tig0032747:36146-36165 | Msa1449930:intergenic | 45.0% |
| AATGCCTTTGTTCACCAGGT+AGG | - | tig0032747:36164-36183 | Msa1449930:CDS | 45.0% | |
| AGTTCCTACCTGGTGAACAA+AGG | + | tig0032747:36171-36190 | Msa1449930:intergenic | 45.0% | |
| TACCGGGAGAAAAAAAAGGG+GGG | + | tig0032747:36346-36365 | Msa1449930:intergenic | 45.0% | |
| !! | TCACTCTCGACTCGACTTTT+AGG | - | tig0032747:36410-36429 | Msa1449930:CDS | 45.0% |
| !! | CACTCTCGACTCGACTTTTA+GGG | - | tig0032747:36411-36430 | Msa1449930:CDS | 45.0% |
| AGAAACTTCGGACTCAGTTG+AGG | + | tig0032747:36548-36567 | Msa1449930:intergenic | 45.0% | |
| TAGCGATAGAGGAAACGCAT+GGG | + | tig0032747:36867-36886 | Msa1449930:intergenic | 45.0% | |
| TTAGCGATAGAGGAAACGCA+TGG | + | tig0032747:36868-36887 | Msa1449930:intergenic | 45.0% | |
| AACCTTACTTGGCTTCGAAG+TGG | - | tig0032747:36903-36922 | Msa1449930:CDS | 45.0% | |
| ! | GTTGGACAAGGTCAAGCTTT+TGG | - | tig0032747:36933-36952 | Msa1449930:CDS | 45.0% |
| !! | TCACTCATTGGTTTCAGCTC+AGG | - | tig0032747:37111-37130 | Msa1449930:CDS | 45.0% |
| TCTGTCCAAGACCTTTCTCA+GGG | + | tig0032747:37351-37370 | Msa1449930:intergenic | 45.0% | |
| TTCTGTCCAAGACCTTTCTC+AGG | + | tig0032747:37352-37371 | Msa1449930:intergenic | 45.0% | |
| CCACCATTTGAGCTCTTCTT+TGG | + | tig0032747:37400-37419 | Msa1449930:intergenic | 45.0% | |
| CCAAAGAAGAGCTCAAATGG+TGG | - | tig0032747:37397-37416 | Msa1449930:intron | 45.0% | |
| ! | GGTGGTGTCAAAGAAGAGAA+AGG | - | tig0032747:37415-37434 | Msa1449930:intron | 45.0% |
| GGCTTATCGTTGTTCTCTTC+TGG | + | tig0032747:37535-37554 | Msa1449930:intergenic | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | + | tig0032747:37556-37575 | Msa1449930:intergenic | 45.0% | |
| ! | AAGCCAAAGAAGAGCGTAAG+TGG | - | tig0032747:37625-37644 | Msa1449930:intron | 45.0% |
| GCCAAAGAAGAGAAAGGTCT+TGG | - | tig0032747:37652-37671 | Msa1449930:intron | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | + | tig0032747:37556-37575 | Msa1449930:intergenic | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | + | tig0032747:37556-37575 | Msa1449930:intergenic | 45.0% | |
| CCAAAGAAGAGCTTAAGTGG+CGG | - | tig0032747:37856-37875 | Msa1449930:intron | 45.0% | |
| GCCAAAGAAGAGAAAGGTCT+TGG | - | tig0032747:37652-37671 | Msa1449930:intron | 45.0% | |
| CTGCCATTCAAGCTCTTCTT+TGG | + | tig0032747:37937-37956 | Msa1449930:intergenic | 45.0% | |
| !! | CAGACAGAAAGCACTAGAAC+AGG | - | tig0032747:37978-37997 | Msa1449930:intron | 45.0% |
| !! | CAGAAAGCACTAGAACAGGA+AGG | - | tig0032747:37982-38001 | Msa1449930:intron | 45.0% |
| CTAGTCTGTAAGACAGCAGT+AGG | + | tig0032747:38018-38037 | Msa1449930:intergenic | 45.0% | |
| CAGACTAGTGTGAAGAAGGT+AGG | - | tig0032747:38030-38049 | Msa1449930:intron | 45.0% | |
| GGAGTTAGCGAAGACTTGAA+TGG | - | tig0032747:38066-38085 | Msa1449930:CDS | 45.0% | |
| GTTAGCGAAGACTTGAATGG+CGG | - | tig0032747:38069-38088 | Msa1449930:CDS | 45.0% | |
| !! | TCCAAGAGTGCCGAGTTATA+TGG | - | tig0032747:38182-38201 | Msa1449930:intron | 45.0% |
| TCAGTCGGAGCCATATAACT+CGG | + | tig0032747:38195-38214 | Msa1449930:intergenic | 45.0% | |
| CGACTGAATCAGCAAAAGCT+AGG | - | tig0032747:38208-38227 | Msa1449930:intron | 45.0% | |
| TCAGCAAAAGCTAGGCTAAG+GGG | - | tig0032747:38216-38235 | Msa1449930:intron | 45.0% | |
| AGATGAAAGTGAATGCCTCC+TGG | + | tig0032747:38292-38311 | Msa1449930:intergenic | 45.0% | |
| TCTCTGTCATCTTCAAGGGA+CGG | - | tig0032747:38399-38418 | Msa1449930:CDS | 45.0% | |
| !!! | AAATAATAATAGATTATTTT+AGG | - | tig0032747:36224-36243 | Msa1449930:CDS | 5.0% |
| TGAGGTCCTGAAAGTTCGCA+AGG | - | tig0032747:35844-35863 | Msa1449930:CDS | 50.0% | |
| TAGAACATACTCTGCGGCGT+AGG | - | tig0032747:36008-36027 | Msa1449930:CDS | 50.0% | |
| CGGCATTGTCACATCTACAC+CGG | - | tig0032747:36124-36143 | Msa1449930:CDS | 50.0% | |
| !!! | CTCCCCCCTTTTTTTTCTCC+CGG | - | tig0032747:36341-36360 | Msa1449930:CDS | 50.0% |
| GATGAAGCCAGCAGCTGAAA+TGG | + | tig0032747:36842-36861 | Msa1449930:intergenic | 50.0% | |
| AGCCACTTCGAAGCCAAGTA+AGG | + | tig0032747:36908-36927 | Msa1449930:intergenic | 50.0% | |
| !! | GAAGAAACCTGACTCGGTCT+CGG | - | tig0032747:36976-36995 | Msa1449930:CDS | 50.0% |
| TTTCACGGCAGGTGATTTCC+GGG | + | tig0032747:37029-37048 | Msa1449930:intergenic | 50.0% | |
| CTTTCACGGCAGGTGATTTC+CGG | + | tig0032747:37030-37049 | Msa1449930:intergenic | 50.0% | |
| TGAGCCCTCATCAGCTTTCA+CGG | + | tig0032747:37044-37063 | Msa1449930:intergenic | 50.0% | |
| GGGCAAGACTCTTCTGACTT+TGG | + | tig0032747:37331-37350 | Msa1449930:intergenic | 50.0% | |
| GAAGAGTCTTGCCCTGAGAA+AGG | - | tig0032747:37337-37356 | Msa1449930:CDS | 50.0% | |
| TCTTGCCCTGAGAAAGGTCT+TGG | - | tig0032747:37343-37362 | Msa1449930:CDS | 50.0% | |
| ! | GAGCTTAAATGGCGGTGTCA+AGG | - | tig0032747:37561-37580 | Msa1449930:intron | 50.0% |
| ! | CCAAAGAAGAGCGTAAGTGG+CGG | - | tig0032747:37628-37647 | Msa1449930:intron | 50.0% |
| CCGCCACTTAAGCTCTTCTT+TGG | + | tig0032747:37859-37878 | Msa1449930:intergenic | 50.0% | |
| GGCAGTGCCAAAGAAGAGAA+AGG | - | tig0032747:37952-37971 | Msa1449930:intron | 50.0% | |
| CAGGCAGTGAAGCTCTTCTT+TGG | + | tig0032747:38119-38138 | Msa1449930:intergenic | 50.0% | |
| TAACTCGGCACTCTTGGACT+TGG | + | tig0032747:38180-38199 | Msa1449930:intergenic | 50.0% | |
| GCCATATAACTCGGCACTCT+TGG | + | tig0032747:38186-38205 | Msa1449930:intergenic | 50.0% | |
| AAAGCTAGGCTAAGGGGACA+AGG | - | tig0032747:38222-38241 | Msa1449930:intron | 50.0% | |
| CTCTGTCATCTTCAAGGGAC+GGG | - | tig0032747:38400-38419 | Msa1449930:CDS | 50.0% | |
| CGGGAGAAAAAAAAGGGGGG+AGG | + | tig0032747:36343-36362 | Msa1449930:intergenic | 55.0% | |
| CTTCGAAGTGGCTTGACCGT+TGG | - | tig0032747:36915-36934 | Msa1449930:CDS | 55.0% | |
| AGTGGCTTGACCGTTGGACA+AGG | - | tig0032747:36921-36940 | Msa1449930:CDS | 55.0% | |
| ! | TTTTCAGCCGAGACCGAGTC+AGG | + | tig0032747:36986-37005 | Msa1449930:intergenic | 55.0% |
| !! | TGACTCGGTCTCGGCTGAAA+AGG | - | tig0032747:36985-37004 | Msa1449930:CDS | 55.0% |
| ACCTGCCGTGAAAGCTGATG+AGG | - | tig0032747:37036-37055 | Msa1449930:CDS | 55.0% | |
| CCTGCCGTGAAAGCTGATGA+GGG | - | tig0032747:37037-37056 | Msa1449930:CDS | 55.0% | |
| GCTGATGAGGGCTCAAGTTC+TGG | - | tig0032747:37049-37068 | Msa1449930:CDS | 55.0% | |
| CCGCCACTTACGCTCTTCTT+TGG | + | tig0032747:37631-37650 | Msa1449930:intergenic | 55.0% | |
| ! | GGCGGTGCCAAAGAAGAGAA+AGG | - | tig0032747:37646-37665 | Msa1449930:intron | 55.0% |
| ! | GGCGGTGCCAAAGAAGAGAA+AGG | - | tig0032747:37646-37665 | Msa1449930:intron | 55.0% |
| TGAGCGGAAGAGGAGTTGCA+AGG | - | tig0032747:38367-38386 | Msa1449930:CDS | 55.0% | |
| CCCTCATCAGCTTTCACGGC+AGG | + | tig0032747:37040-37059 | Msa1449930:intergenic | 60.0% | |
| GATGTTTCAGAGCAGGGGCC+AGG | - | tig0032747:37271-37290 | Msa1449930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032747 | gene | 35797 | 38425 | 35797 | ID=Msa1449930;Name=Msa1449930 |
| tig0032747 | mRNA | 35797 | 38425 | 35797 | ID=Msa1449930-mRNA-1;Parent=Msa1449930;Name=Msa1449930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.33|1|1|0.66|3|0|576 |
| tig0032747 | exon | 38357 | 38425 | 38357 | ID=Msa1449930-mRNA-1:exon:17207;Parent=Msa1449930-mRNA-1 |
| tig0032747 | exon | 38041 | 38121 | 38041 | ID=Msa1449930-mRNA-1:exon:17206;Parent=Msa1449930-mRNA-1 |
| tig0032747 | exon | 35797 | 37374 | 35797 | ID=Msa1449930-mRNA-1:exon:17205;Parent=Msa1449930-mRNA-1 |
| tig0032747 | CDS | 38357 | 38425 | 38357 | ID=Msa1449930-mRNA-1:cds;Parent=Msa1449930-mRNA-1 |
| tig0032747 | CDS | 38041 | 38121 | 38041 | ID=Msa1449930-mRNA-1:cds;Parent=Msa1449930-mRNA-1 |
| tig0032747 | CDS | 35797 | 37374 | 35797 | ID=Msa1449930-mRNA-1:cds;Parent=Msa1449930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
