AlfalfaGEDB | Msa0238660

M. sativa cultivar zhongmu-4 / Msa0238660

KEGG: K14009
GO: GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
PFAM: PF17675.4

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238660	XP_013462866.1	99.099	222	2	0	1	222	1	222	2.35e-156	442

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238660	A0A072V5J3	99.099	222	2	0	1	222	1	222	1.12e-156	442

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0098470	Msa0238660	0.810252	1.264028e-50	-8.615850e-47
Msa0152870	Msa0238660	0.800646	1.307000e-48	-8.615850e-47
Msa0209140	Msa0238660	0.817117	3.894369e-52	-8.615850e-47
Msa0238660	Msa0276380	0.975271	1.196027e-139	-8.615850e-47
Msa0238660	Msa0296250	0.804005	2.658728e-49	-8.615850e-47
Msa0238660	Msa0309720	0.800552	1.365867e-48	-8.615850e-47
Msa0238660	Msa0316430	0.884643	1.609309e-71	-8.615850e-47
Msa0238660	Msa0435370	0.804129	2.505357e-49	-8.615850e-47
Msa0238660	Msa0435420	0.800335	1.512411e-48	-8.615850e-47
Msa0238660	Msa1206230	0.819863	9.288310e-53	-8.615850e-47
Msa0238660	Msa1297970	0.823982	1.032780e-53	-8.615850e-47
Msa0238660	Msa1368080	0.817700	2.878047e-52	-8.615850e-47
Msa0238660	Msa1373170	0.828405	9.157082e-55	-8.615850e-47
Msa0238660	Msa1373820	0.808819	2.567463e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238660	MtrunA17_Chr2g0288831	99.099	222	2	0	1	222	1	222	2.16e-160	442
Msa0238660	MtrunA17_Chr4g0024941	61.086	221	85	1	1	221	1	220	8.06e-97	281
Msa0238660	MtrunA17_Chr2g0322421	51.584	221	106	1	1	221	1	220	1.13e-68	210
Msa0238660	MtrunA17_Chr7g0235621	44.131	213	110	3	1	205	1	212	1.30e-49	161
Msa0238660	MtrunA17_Chr5g0444551	49.306	144	72	1	1	144	1	143	4.48e-44	144
Msa0238660	MtrunA17_Chr5g0444571	51.579	95	45	1	1	95	1	94	1.03e-28	103

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0238660	AT5G42570.1	64.593	209	73	1	1	209	1	208	4.32e-97	282
Msa0238660	AT1G11905.1	59.524	210	84	1	1	210	1	209	1.07e-84	251
Msa0238660	AT1G11905.2	55.714	210	91	2	1	210	1	208	4.39e-73	221
Msa0238660	AT5G48660.1	42.056	214	115	3	1	206	1	213	2.04e-44	148
Msa0238660	AT3G07190.1	41.121	214	117	3	1	206	1	213	3.04e-42	142
Msa0238660	AT3G20450.1	50.376	133	65	1	1	132	5	137	1.08e-37	128
Msa0238660	AT5G48660.2	37.226	137	79	1	77	206	1	137	4.29e-19	80.9

Find 71 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATCACACACACAGAGTTTA+TGG	0.163535	2_2:-12484581	None:intergenic
ACACTTTGTTAGGACAAAAT+TGG	0.172115	2_2:-12487388	None:intergenic
TGTTTCTCACATATTCTTCT+TGG	0.219887	2_2:-12487239	None:intergenic
TCCTACCGATCAGGTTCTTA+TGG	0.252341	2_2:+12484915	Msa0238660:CDS
CATAGCAGCTTGCTAGTAAC+AGG	0.279190	2_2:+12487302	Msa0238660:three_prime_UTR
TTATCATTGTTTCTTCTTTG+TGG	0.284036	2_2:+12487567	Msa0238660:three_prime_UTR
GTAGCTGGTTGCGGAGGTTT+TGG	0.307160	2_2:-12487183	None:intergenic
TACACCGATCAAGAGTGTTT+TGG	0.308796	2_2:-12484649	None:intergenic
ATTGAGGAAGCTTGTAATAA+TGG	0.322813	2_2:+12484753	Msa0238660:CDS
CTATCATAAGTGCAAGAAAA+AGG	0.327998	2_2:-12486880	None:intergenic
TTCATGAGAAGCATGTTTAC+AGG	0.331687	2_2:-12487334	None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG	0.347270	2_2:+12486977	Msa0238660:CDS
GAATATGTGAGAAACATTTA+AGG	0.355673	2_2:+12487246	Msa0238660:exon
GAAGCTTGTAATAATGGCTT+TGG	0.364769	2_2:+12484759	Msa0238660:CDS
CCATGCTCTTTCTCCGAATC+CGG	0.367578	2_2:-12486931	None:intergenic
CACTTTGTTAGGACAAAATT+GGG	0.372520	2_2:-12487387	None:intergenic
TTATTACAAGCTTCCTCAAT+GGG	0.391866	2_2:-12484750	None:intergenic
AAATAGTGCTTGATATCTCT+TGG	0.410580	2_2:+12487522	Msa0238660:three_prime_UTR
AAGCCAGTGTAAGTGCTCTA+AGG	0.421670	2_2:+12487110	Msa0238660:CDS
ATGGGGTGAGTGAGAGGTTG+TGG	0.423024	2_2:-12484562	None:intergenic
CTTCTGTTCCTTCATTATGA+AGG	0.425413	2_2:+12487488	Msa0238660:three_prime_UTR
TAAACATGCTTCTCATGAAT+AGG	0.439713	2_2:+12487338	Msa0238660:three_prime_UTR
TTCTGTTAATCCTACCGATC+AGG	0.442382	2_2:+12484906	Msa0238660:CDS
ATCACACACACAGAGTTTAT+GGG	0.442629	2_2:-12484580	None:intergenic
ACAGACTGCATCATTACATA+AGG	0.453424	2_2:+12486903	Msa0238660:CDS
ACATAAGGGAACTCCGGATT+CGG	0.458900	2_2:+12486918	Msa0238660:CDS
ACGAGGTCGTGGACCTGTTA+TGG	0.464283	2_2:+12484792	Msa0238660:CDS
TTCTGTCAACAGATTGTAGC+TGG	0.470135	2_2:-12487198	None:intergenic
ATTATTACAAGCTTCCTCAA+TGG	0.471169	2_2:-12484751	None:intergenic
CTGTTACTAGCAAGCTGCTA+TGG	0.480052	2_2:-12487301	None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG	0.490422	2_2:+12487045	Msa0238660:CDS
AGATATCAAGCACTATTTCA+AGG	0.505263	2_2:-12487517	None:intergenic
CAACAGATTGTAGCTGGTTG+CGG	0.507849	2_2:-12487192	None:intergenic
GTTATGGTGAAAACCGTTGC+TGG	0.514910	2_2:+12484808	Msa0238660:CDS
GGCACATTCCTTCATAATGA+AGG	0.518873	2_2:-12487496	None:intergenic
TTCAGATGAAACTAAAACAA+TGG	0.522908	2_2:+12487003	Msa0238660:CDS
GATCGGTTGAAACGAGGTCG+TGG	0.523142	2_2:+12484781	Msa0238660:CDS
ACTTCAGTCAAAAGATAAAG+AGG	0.526615	2_2:+12487075	Msa0238660:CDS
GTCAATATAATAGAACTCTC+TGG	0.527974	2_2:-12487604	None:intergenic
CAACAACGTGGGATCGAAGA+TGG	0.533524	2_2:+12484880	Msa0238660:CDS
TGAATATGATCGCTTACTTG+AGG	0.542275	2_2:+12487156	Msa0238660:CDS
TTGTAATAATGGCTTTGGAT+CGG	0.542465	2_2:+12484764	Msa0238660:CDS
AGCTGTTAAGAAACAAATGC+GGG	0.550293	2_2:+12486955	Msa0238660:CDS
TCTTCTTGAAGCTACACTCA+TGG	0.550488	2_2:+12484945	Msa0238660:CDS
TCATGAGAAGCATGTTTACA+GGG	0.551926	2_2:-12487333	None:intergenic
GAGTTTATGGGGTGAGTGAG+AGG	0.552067	2_2:-12484568	None:intergenic
CAGACTGCATCATTACATAA+GGG	0.555282	2_2:+12486904	Msa0238660:CDS
CTTCTTGAAGCTACACTCAT+GGG	0.557141	2_2:+12484946	Msa0238660:CDS
CAGATTGTAGCTGGTTGCGG+AGG	0.567147	2_2:-12487189	None:intergenic
GCTCTAAGGAAACAATCTGA+AGG	0.569864	2_2:+12487124	Msa0238660:CDS
ATCATTACATAAGGGAACTC+CGG	0.575747	2_2:+12486912	Msa0238660:CDS
GCCATAAGAACCTGATCGGT+AGG	0.586898	2_2:-12484916	None:intergenic
CTCTAAGGAAACAATCTGAA+GGG	0.587548	2_2:+12487125	Msa0238660:CDS
CAGTCAAAAGATAAAGAGGT+AGG	0.596716	2_2:+12487079	Msa0238660:CDS
CCGGATTCGGAGAAAGAGCA+TGG	0.597596	2_2:+12486931	Msa0238660:CDS
GCTTTGGATCGGTTGAAACG+AGG	0.607033	2_2:+12484775	Msa0238660:CDS
AGATCCAAAACACTCTTGAT+CGG	0.608818	2_2:+12484645	Msa0238660:five_prime_UTR
TTTCCTTAGAGCACTTACAC+TGG	0.609208	2_2:-12487113	None:intergenic
CTTAGCCATAAGAACCTGAT+CGG	0.613122	2_2:-12484920	None:intergenic
AACAAGAACAGTACCAGCAA+CGG	0.621936	2_2:-12484821	None:intergenic
TCACACACACAGAGTTTATG+GGG	0.626002	2_2:-12484579	None:intergenic
CTGTTAAGAAACAAATGCGG+GGG	0.642686	2_2:+12486957	Msa0238660:CDS
TGTTATTCAAGACCCCATTG+AGG	0.652558	2_2:+12484737	Msa0238660:CDS
GAATTGCTTCATCACCGACA+AGG	0.655249	2_2:+12484620	Msa0238660:five_prime_UTR
TGATGAAGATTCAACAACGT+GGG	0.655476	2_2:+12484869	Msa0238660:CDS
TATGTGAGAAACATTTAAGG+CGG	0.655679	2_2:+12487249	Msa0238660:exon
GCTGTTAAGAAACAAATGCG+GGG	0.673517	2_2:+12486956	Msa0238660:CDS
TATTACAAGCTTCCTCAATG+GGG	0.687342	2_2:-12484749	None:intergenic
AAGCTGTTAAGAAACAAATG+CGG	0.709469	2_2:+12486954	Msa0238660:CDS
TGTTAAGAAACAAATGCGGG+GGG	0.715839	2_2:+12486958	Msa0238660:CDS
ATGATGAAGATTCAACAACG+TGG	0.740230	2_2:+12484868	Msa0238660:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCATAATATGAAATAAAA+GGG	-	chr2_2:12485841-12485860	None:intergenic	10.0%
!!	TATTCATAATATGAAATAAA+AGG	-	chr2_2:12485842-12485861	None:intergenic	10.0%
!!	TTTAATAAGTCTAAATATTA+AGG	-	chr2_2:12486800-12486819	None:intergenic	10.0%
!!!	TTGAATTTGATTTATGTTTA+TGG	+	chr2_2:12485050-12485069	Msa0238660:intron	15.0%
!!!	TTTTGTAAATATGATCAAAT+AGG	+	chr2_2:12485149-12485168	Msa0238660:intron	15.0%
!!!	TTTTACTAGTTGTATATAAT+TGG	+	chr2_2:12485790-12485809	Msa0238660:intron	15.0%
!!	TATAGTATTAAACTTATTAG+TGG	+	chr2_2:12485922-12485941	Msa0238660:intron	15.0%
!!!	GTGTGAATTTTTTTTTTTTT+TGG	+	chr2_2:12487407-12487426	Msa0238660:three_prime_UTR	15.0%
!!!	ATGGGTATGTTTTTTTTAAA+TGG	+	chr2_2:12484964-12484983	Msa0238660:intron	20.0%
!!!	TGGGTATGTTTTTTTTAAAT+GGG	+	chr2_2:12484965-12484984	Msa0238660:intron	20.0%
!!	TTGATTTATGTTTATGGATT+TGG	+	chr2_2:12485056-12485075	Msa0238660:intron	20.0%
!!!	ATTTTGCTTATAATTAAGAC+TGG	+	chr2_2:12485193-12485212	Msa0238660:intron	20.0%
!!!	GTTATTGTTTTACTATTGAT+AGG	-	chr2_2:12485770-12485789	None:intergenic	20.0%
!!!	AGTATTTCTTTTGAATAGTA+TGG	+	chr2_2:12485897-12485916	Msa0238660:intron	20.0%
!!	AATCATAAGATATATGCATA+TGG	-	chr2_2:12486160-12486179	None:intergenic	20.0%
!!	TTCTAAACCATTGAAAAAAT+CGG	-	chr2_2:12486388-12486407	None:intergenic	20.0%
!!	ATTGTTTATTGATGAGTTAT+TGG	+	chr2_2:12486494-12486513	Msa0238660:intron	20.0%
!!!	CTATATGATTTGCAATTTTT+AGG	+	chr2_2:12486549-12486568	Msa0238660:intron	20.0%
!!!	TCTTTGATTTTTAATAAGAC+CGG	+	chr2_2:12486686-12486705	Msa0238660:intron	20.0%
!!!	TTTTACTTCAGAGTTAAATT+TGG	+	chr2_2:12487363-12487382	Msa0238660:three_prime_UTR	20.0%
!!	AAAAAAATTCACACTTTGTT+AGG	-	chr2_2:12487401-12487420	None:intergenic	20.0%
!!	GAATGAATGAATTTTGTATG+AGG	+	chr2_2:12485025-12485044	Msa0238660:intron	25.0%
!	CTACATTAATGAAAGGAAAA+GGG	-	chr2_2:12485422-12485441	None:intergenic	25.0%
!	ACTACATTAATGAAAGGAAA+AGG	-	chr2_2:12485423-12485442	None:intergenic	25.0%
!!!	GAAGTTTTGAGTAATGTTTA+AGG	+	chr2_2:12485868-12485887	Msa0238660:intron	25.0%
!!	AATCATTGTGATTCTTTTTC+AGG	-	chr2_2:12486106-12486125	None:intergenic	25.0%
!	AAGTTTAACAACATACTAGA+TGG	-	chr2_2:12486598-12486617	None:intergenic	25.0%
!	TTTGGAAATATGTTGAACTT+AGG	-	chr2_2:12486645-12486664	None:intergenic	25.0%
!!!	CAGCAATGTTTTGAAAAATT+TGG	-	chr2_2:12486663-12486682	None:intergenic	25.0%
!	TTATTAAAAGATATCCTCTG+TGG	+	chr2_2:12486812-12486831	Msa0238660:intron	25.0%
!	TTCAGATGAAACTAAAACAA+TGG	+	chr2_2:12487003-12487022	Msa0238660:CDS	25.0%
!	GAATATGTGAGAAACATTTA+AGG	+	chr2_2:12487246-12487265	Msa0238660:exon	25.0%
!!	TTCTTCTCTTCTATACTTTT+TGG	+	chr2_2:12487273-12487292	Msa0238660:three_prime_UTR	25.0%
!!!	TCTTCTCTTCTATACTTTTT+GGG	+	chr2_2:12487274-12487293	Msa0238660:three_prime_UTR	25.0%
!!	TTATCATTGTTTCTTCTTTG+TGG	+	chr2_2:12487567-12487586	Msa0238660:three_prime_UTR	25.0%
	TTATTACAAGCTTCCTCAAT+GGG	-	chr2_2:12484753-12484772	None:intergenic	30.0%
	ATTATTACAAGCTTCCTCAA+TGG	-	chr2_2:12484754-12484773	None:intergenic	30.0%
	ATTGAGGAAGCTTGTAATAA+TGG	+	chr2_2:12484753-12484772	Msa0238660:CDS	30.0%
!!	TTGTAATAATGGCTTTGGAT+CGG	+	chr2_2:12484764-12484783	Msa0238660:CDS	30.0%
	TGCTTATAATTAAGACTGGA+CGG	+	chr2_2:12485197-12485216	Msa0238660:intron	30.0%
!	TGATCAATCACAAAACCTTT+TGG	+	chr2_2:12485337-12485356	Msa0238660:intron	30.0%
	AGATCTTCTCAATTTCCAAA+AGG	-	chr2_2:12485355-12485374	None:intergenic	30.0%
	AGATCGACTACATTAATGAA+AGG	-	chr2_2:12485429-12485448	None:intergenic	30.0%
!!!	GATTCTTTTTCAGGAAAACA+CGG	-	chr2_2:12486097-12486116	None:intergenic	30.0%
	ACAATGATTCAGCATTCATA+AGG	+	chr2_2:12486117-12486136	Msa0238660:intron	30.0%
	TTGTTTGCCTAATTCTTTGT+TGG	+	chr2_2:12486328-12486347	Msa0238660:intron	30.0%
	TGTTTGCCTAATTCTTTGTT+GGG	+	chr2_2:12486329-12486348	Msa0238660:intron	30.0%
	GAATAACCCAACAAAGAATT+AGG	-	chr2_2:12486338-12486357	None:intergenic	30.0%
!!!	TTTGCTACCGATTTTTTCAA+TGG	+	chr2_2:12486378-12486397	Msa0238660:intron	30.0%
!	ATGGTTTAGAATGAATGTTG+AGG	+	chr2_2:12486397-12486416	Msa0238660:intron	30.0%
	AAGTTGAAAAATGTGAGCTT+TGG	+	chr2_2:12486448-12486467	Msa0238660:intron	30.0%
	GTTTATTGATGAGTTATTGG+TGG	+	chr2_2:12486497-12486516	Msa0238660:intron	30.0%
!!!	ATGTTGTTTTAAGATGTGAC+CGG	-	chr2_2:12486708-12486727	None:intergenic	30.0%
	TTAAAACAACATAGCTGAAG+AGG	+	chr2_2:12486716-12486735	Msa0238660:intron	30.0%
	CAGTATTGTTTATGTTGGAT+TGG	-	chr2_2:12486755-12486774	None:intergenic	30.0%
	CTCAACAGTATTGTTTATGT+TGG	-	chr2_2:12486760-12486779	None:intergenic	30.0%
	ATTCTTGGTCAATTATTTGC+AGG	+	chr2_2:12486851-12486870	Msa0238660:intron	30.0%
	CTATCATAAGTGCAAGAAAA+AGG	-	chr2_2:12486883-12486902	None:intergenic	30.0%
	AAGCTGTTAAGAAACAAATG+CGG	+	chr2_2:12486954-12486973	Msa0238660:CDS	30.0%
	ACTTCAGTCAAAAGATAAAG+AGG	+	chr2_2:12487075-12487094	Msa0238660:CDS	30.0%
	TGTTTCTCACATATTCTTCT+TGG	-	chr2_2:12487242-12487261	None:intergenic	30.0%
	TATGTGAGAAACATTTAAGG+CGG	+	chr2_2:12487249-12487268	Msa0238660:exon	30.0%
	TAAACATGCTTCTCATGAAT+AGG	+	chr2_2:12487338-12487357	Msa0238660:three_prime_UTR	30.0%
	CACTTTGTTAGGACAAAATT+GGG	-	chr2_2:12487390-12487409	None:intergenic	30.0%
	ACACTTTGTTAGGACAAAAT+TGG	-	chr2_2:12487391-12487410	None:intergenic	30.0%
	AGATATCAAGCACTATTTCA+AGG	-	chr2_2:12487520-12487539	None:intergenic	30.0%
	AAATAGTGCTTGATATCTCT+TGG	+	chr2_2:12487522-12487541	Msa0238660:three_prime_UTR	30.0%
	ATCACACACACAGAGTTTAT+GGG	-	chr2_2:12484583-12484602	None:intergenic	35.0%
!!	TGTTTTGGATCTTACCTTGT+CGG	-	chr2_2:12484637-12484656	None:intergenic	35.0%
	AGATCCAAAACACTCTTGAT+CGG	+	chr2_2:12484645-12484664	Msa0238660:five_prime_UTR	35.0%
	TATTACAAGCTTCCTCAATG+GGG	-	chr2_2:12484752-12484771	None:intergenic	35.0%
	GAAGCTTGTAATAATGGCTT+TGG	+	chr2_2:12484759-12484778	Msa0238660:CDS	35.0%
	ATGATGAAGATTCAACAACG+TGG	+	chr2_2:12484868-12484887	Msa0238660:CDS	35.0%
	TGATGAAGATTCAACAACGT+GGG	+	chr2_2:12484869-12484888	Msa0238660:CDS	35.0%
!	GTCATATCTAGTTTCCGTAT+CGG	-	chr2_2:12485244-12485263	None:intergenic	35.0%
	TTTGTATGAGTTGTGAGTGT+TGG	+	chr2_2:12485295-12485314	Msa0238660:intron	35.0%
!	GAACCCATTTTCTGATCTTT+CGG	+	chr2_2:12485387-12485406	Msa0238660:intron	35.0%
	ACTCCGAAAGATCAGAAAAT+GGG	-	chr2_2:12485393-12485412	None:intergenic	35.0%
	AAGAACCATTCGAGAATTGA+AGG	-	chr2_2:12485563-12485582	None:intergenic	35.0%
	CTGTTGTCAATGCAGAAATA+CGG	-	chr2_2:12485983-12486002	None:intergenic	35.0%
	TTCAGCATTCATAAGGCATA+AGG	+	chr2_2:12486124-12486143	Msa0238660:intron	35.0%
!!!	TTGGTATTTTAGCCTCCTAA+TGG	+	chr2_2:12486229-12486248	Msa0238660:intron	35.0%
!!!	TGGTATTTTAGCCTCCTAAT+GGG	+	chr2_2:12486230-12486249	Msa0238660:intron	35.0%
	GAGAATGTTCTACTTTCTTG+TGG	+	chr2_2:12486470-12486489	Msa0238660:intron	35.0%
	TTGCGAGCATTATTCATTCT+TGG	+	chr2_2:12486836-12486855	Msa0238660:intron	35.0%
	ACAGACTGCATCATTACATA+AGG	+	chr2_2:12486903-12486922	Msa0238660:CDS	35.0%
	CAGACTGCATCATTACATAA+GGG	+	chr2_2:12486904-12486923	Msa0238660:CDS	35.0%
	ATCATTACATAAGGGAACTC+CGG	+	chr2_2:12486912-12486931	Msa0238660:CDS	35.0%
	AGCTGTTAAGAAACAAATGC+GGG	+	chr2_2:12486955-12486974	Msa0238660:CDS	35.0%
	CAGTCAAAAGATAAAGAGGT+AGG	+	chr2_2:12487079-12487098	Msa0238660:CDS	35.0%
!	CTCTAAGGAAACAATCTGAA+GGG	+	chr2_2:12487125-12487144	Msa0238660:CDS	35.0%
	TGAATATGATCGCTTACTTG+AGG	+	chr2_2:12487156-12487175	Msa0238660:CDS	35.0%
!	TCATGAGAAGCATGTTTACA+GGG	-	chr2_2:12487336-12487355	None:intergenic	35.0%
!	TTCATGAGAAGCATGTTTAC+AGG	-	chr2_2:12487337-12487356	None:intergenic	35.0%
	CTTCTGTTCCTTCATTATGA+AGG	+	chr2_2:12487488-12487507	Msa0238660:three_prime_UTR	35.0%
	TCACACACACAGAGTTTATG+GGG	-	chr2_2:12484582-12484601	None:intergenic	40.0%
	CATCACACACACAGAGTTTA+TGG	-	chr2_2:12484584-12484603	None:intergenic	40.0%
!!!	TACACCGATCAAGAGTGTTT+TGG	-	chr2_2:12484652-12484671	None:intergenic	40.0%
	TGTTATTCAAGACCCCATTG+AGG	+	chr2_2:12484737-12484756	Msa0238660:CDS	40.0%
	AACAAGAACAGTACCAGCAA+CGG	-	chr2_2:12484824-12484843	None:intergenic	40.0%
	TTCTGTTAATCCTACCGATC+AGG	+	chr2_2:12484906-12484925	Msa0238660:CDS	40.0%
	CTTAGCCATAAGAACCTGAT+CGG	-	chr2_2:12484923-12484942	None:intergenic	40.0%
	TCTTCTTGAAGCTACACTCA+TGG	+	chr2_2:12484945-12484964	Msa0238660:CDS	40.0%
	CTTCTTGAAGCTACACTCAT+GGG	+	chr2_2:12484946-12484965	Msa0238660:CDS	40.0%
	GACTCCGAAAGATCAGAAAA+TGG	-	chr2_2:12485394-12485413	None:intergenic	40.0%
	AATACACGTTCACGAGGTAT+AGG	-	chr2_2:12486069-12486088	None:intergenic	40.0%
	GCTAAAATACCAAGAGTGAC+CGG	-	chr2_2:12486222-12486241	None:intergenic	40.0%
	AATCATATGAGCCCATTAGG+AGG	-	chr2_2:12486244-12486263	None:intergenic	40.0%
	CTGAATCATATGAGCCCATT+AGG	-	chr2_2:12486247-12486266	None:intergenic	40.0%
	AATTAGGCAAACAACCAACG+AGG	-	chr2_2:12486322-12486341	None:intergenic	40.0%
!	AGTTATTGGTGGCATTAGCA+GGG	+	chr2_2:12486508-12486527	Msa0238660:intron	40.0%
	GCTGTTAAGAAACAAATGCG+GGG	+	chr2_2:12486956-12486975	Msa0238660:CDS	40.0%
	CTGTTAAGAAACAAATGCGG+GGG	+	chr2_2:12486957-12486976	Msa0238660:CDS	40.0%
	TGTTAAGAAACAAATGCGGG+GGG	+	chr2_2:12486958-12486977	Msa0238660:CDS	40.0%
!	TTTCCTTAGAGCACTTACAC+TGG	-	chr2_2:12487116-12487135	None:intergenic	40.0%
!!	GCTCTAAGGAAACAATCTGA+AGG	+	chr2_2:12487124-12487143	Msa0238660:CDS	40.0%
	TTCTGTCAACAGATTGTAGC+TGG	-	chr2_2:12487201-12487220	None:intergenic	40.0%
	GGCACATTCCTTCATAATGA+AGG	-	chr2_2:12487499-12487518	None:intergenic	40.0%
	GAATTGCTTCATCACCGACA+AGG	+	chr2_2:12484620-12484639	Msa0238660:five_prime_UTR	45.0%
!	GCAACGGTTTTCACCATAAC+AGG	-	chr2_2:12484808-12484827	None:intergenic	45.0%
	GTTATGGTGAAAACCGTTGC+TGG	+	chr2_2:12484808-12484827	Msa0238660:CDS	45.0%
	TCCTACCGATCAGGTTCTTA+TGG	+	chr2_2:12484915-12484934	Msa0238660:CDS	45.0%
!	TCTAGTTTCCGTATCGGATC+CGG	-	chr2_2:12485238-12485257	None:intergenic	45.0%
!!	TGAGTTGTGAGTGTTGGTCA+CGG	+	chr2_2:12485301-12485320	Msa0238660:intron	45.0%
	TCTTGAGTTTACTGTGCCTC+TGG	+	chr2_2:12485579-12485598	Msa0238660:intron	45.0%
	TTTGACAGGGTAAAGCCTCT+CGG	-	chr2_2:12485618-12485637	None:intergenic	45.0%
	AGAGGCTTTACCCTGTCAAA+CGG	+	chr2_2:12485618-12485637	Msa0238660:intron	45.0%
!	TTTTGACAACAGAGGACAGG+AGG	-	chr2_2:12485647-12485666	None:intergenic	45.0%
	CTGTCCTCTGTTGTCAAAAG+CGG	+	chr2_2:12485648-12485667	Msa0238660:intron	45.0%
	CGGAGCATAGCAGAAAAATC+AGG	+	chr2_2:12485689-12485708	Msa0238660:intron	45.0%
	GTCAATGCAGAAATACGGTG+TGG	-	chr2_2:12485978-12485997	None:intergenic	45.0%
	TCTAGAAGCTGAACCTAGAC+AGG	-	chr2_2:12486010-12486029	None:intergenic	45.0%
	GTTCGAAATACACGTTCACG+AGG	-	chr2_2:12486075-12486094	None:intergenic	45.0%
!	GAGTTATTGGTGGCATTAGC+AGG	+	chr2_2:12486507-12486526	Msa0238660:intron	45.0%
	ACATAAGGGAACTCCGGATT+CGG	+	chr2_2:12486918-12486937	Msa0238660:CDS	45.0%
	AAGCCAGTGTAAGTGCTCTA+AGG	+	chr2_2:12487110-12487129	Msa0238660:CDS	45.0%
	CAACAGATTGTAGCTGGTTG+CGG	-	chr2_2:12487195-12487214	None:intergenic	45.0%
	CTGTTACTAGCAAGCTGCTA+TGG	-	chr2_2:12487304-12487323	None:intergenic	45.0%
!!	CATAGCAGCTTGCTAGTAAC+AGG	+	chr2_2:12487302-12487321	Msa0238660:three_prime_UTR	45.0%
	GAGTTTATGGGGTGAGTGAG+AGG	-	chr2_2:12484571-12484590	None:intergenic	50.0%
!	GCTTTGGATCGGTTGAAACG+AGG	+	chr2_2:12484775-12484794	Msa0238660:CDS	50.0%
	CAACAACGTGGGATCGAAGA+TGG	+	chr2_2:12484880-12484899	Msa0238660:CDS	50.0%
	GCCATAAGAACCTGATCGGT+AGG	-	chr2_2:12484919-12484938	None:intergenic	50.0%
!	ACGGAGTATCTGTCAAGCAC+CGG	+	chr2_2:12485216-12485235	Msa0238660:intron	50.0%
	TGACACTGACACAGACACGT+TGG	+	chr2_2:12485260-12485279	Msa0238660:intron	50.0%
	TTGCTGCATCTGATGCAGCA+TGG	+	chr2_2:12485534-12485553	Msa0238660:intron	50.0%
	GGCTGCCTTCAATTCTCGAA+TGG	+	chr2_2:12485555-12485574	Msa0238660:intron	50.0%
	GAGGCTTTACCCTGTCAAAC+GGG	+	chr2_2:12485619-12485638	Msa0238660:intron	50.0%
!	CGCTTTTGACAACAGAGGAC+AGG	-	chr2_2:12485650-12485669	None:intergenic	50.0%
	TCTGCTATGCTCCGCTATAG+CGG	-	chr2_2:12485683-12485702	None:intergenic	50.0%
	CGGGTATCAGAAGTGGAAAG+CGG	+	chr2_2:12485735-12485754	Msa0238660:intron	50.0%
	AGAAGTGGAAAGCGGCAAAG+CGG	+	chr2_2:12485743-12485762	Msa0238660:intron	50.0%
	AAATACGGTGTGGCGCATAG+CGG	-	chr2_2:12485968-12485987	None:intergenic	50.0%
	TGACAACAGAGCTCCTGTCT+AGG	+	chr2_2:12485994-12486013	Msa0238660:intron	50.0%
	AGAGAAAGAGCCTTCACCCT+TGG	+	chr2_2:12486191-12486210	Msa0238660:intron	50.0%
	GAGAAAGAGCCTTCACCCTT+GGG	+	chr2_2:12486192-12486211	Msa0238660:intron	50.0%
!	AGAGTGACCGGTTTACCCAA+GGG	-	chr2_2:12486210-12486229	None:intergenic	50.0%
!	AAGAGTGACCGGTTTACCCA+AGG	-	chr2_2:12486211-12486230	None:intergenic	50.0%
	TTGGGTAAACCGGTCACTCT+TGG	+	chr2_2:12486210-12486229	Msa0238660:intron	50.0%
	ACTTGTGAGTGAAGCCTCGT+TGG	+	chr2_2:12486305-12486324	Msa0238660:intron	50.0%
	ATAATGCTCGCAAGCCACAG+AGG	-	chr2_2:12486829-12486848	None:intergenic	50.0%
	CCATGCTCTTTCTCCGAATC+CGG	-	chr2_2:12486934-12486953	None:intergenic	50.0%
!	GAGAGCAGAAGTTGATCGTC+TGG	+	chr2_2:12487045-12487064	Msa0238660:CDS	50.0%
	GATCGGTTGAAACGAGGTCG+TGG	+	chr2_2:12484781-12484800	Msa0238660:CDS	55.0%
	ACGAGGTCGTGGACCTGTTA+TGG	+	chr2_2:12484792-12484811	Msa0238660:CDS	55.0%
!!	GTCAAGCACCGGATCCGATA+CGG	+	chr2_2:12485227-12485246	Msa0238660:intron	55.0%
	AGGGTAAAGCCTCTCGGACT+GGG	-	chr2_2:12485612-12485631	None:intergenic	55.0%
	AAAATCAGGACCACTGCGCC+AGG	+	chr2_2:12485703-12485722	Msa0238660:intron	55.0%
	AATACGGTGTGGCGCATAGC+GGG	-	chr2_2:12485967-12485986	None:intergenic	55.0%
!!	ACTGGAAGAGGTGCCAACAG+GGG	-	chr2_2:12486045-12486064	None:intergenic	55.0%
!!	CACTGGAAGAGGTGCCAACA+GGG	-	chr2_2:12486046-12486065	None:intergenic	55.0%
!!	CGAGGTATAGGCACTGGAAG+AGG	-	chr2_2:12486057-12486076	None:intergenic	55.0%
	CGTTCACGAGGTATAGGCAC+TGG	-	chr2_2:12486063-12486082	None:intergenic	55.0%
	GCCTTCACCCTTGGGTAAAC+CGG	+	chr2_2:12486200-12486219	Msa0238660:intron	55.0%
!	ACCGGTTTACCCAAGGGTGA+AGG	-	chr2_2:12486204-12486223	None:intergenic	55.0%
	CCGGATTCGGAGAAAGAGCA+TGG	+	chr2_2:12486931-12486950	Msa0238660:CDS	55.0%
!	GTAGCTGGTTGCGGAGGTTT+TGG	-	chr2_2:12487186-12487205	None:intergenic	55.0%
	CAGATTGTAGCTGGTTGCGG+AGG	-	chr2_2:12487192-12487211	None:intergenic	55.0%
	GGGTAAAGCCTCTCGGACTG+GGG	-	chr2_2:12485611-12485630	None:intergenic	60.0%
	CAGGGTAAAGCCTCTCGGAC+TGG	-	chr2_2:12485613-12485632	None:intergenic	60.0%
	CAGGAGGAGCCCGTTTGACA+GGG	-	chr2_2:12485631-12485650	None:intergenic	60.0%
	ACAGGAGGAGCCCGTTTGAC+AGG	-	chr2_2:12485632-12485651	None:intergenic	60.0%
!!!	GCGGCCGCTTTTGACAACAG+AGG	-	chr2_2:12485655-12485674	None:intergenic	60.0%
	GTTGTCAAAAGCGGCCGCAC+CGG	+	chr2_2:12485657-12485676	Msa0238660:intron	60.0%
	CTATGCTCCGCTATAGCGGC+CGG	-	chr2_2:12485679-12485698	None:intergenic	60.0%
	ACTTCTGATACCCGCCGACG+CGG	-	chr2_2:12485729-12485748	None:intergenic	60.0%
!!	CATAGCGGGCGCTATTTCGG+TGG	-	chr2_2:12485953-12485972	None:intergenic	60.0%
!!	GCGCATAGCGGGCGCTATTT+CGG	-	chr2_2:12485956-12485975	None:intergenic	60.0%
	ACCTCTCTCAGCTCCCCTGT+TGG	+	chr2_2:12486029-12486048	Msa0238660:intron	60.0%
!!	GCACTGGAAGAGGTGCCAAC+AGG	-	chr2_2:12486047-12486066	None:intergenic	60.0%
	GAAACAAATGCGGGGGGCTG+AGG	+	chr2_2:12486964-12486983	Msa0238660:CDS	60.0%
!	CGGACTGGGGAAAGAGCCAG+AGG	-	chr2_2:12485598-12485617	None:intergenic	65.0%
	GGCTCTTTCCCCAGTCCGAG+AGG	+	chr2_2:12485600-12485619	Msa0238660:intron	65.0%
!	GCGTCGGCGGGTATCAGAAG+TGG	+	chr2_2:12485728-12485747	Msa0238660:intron	65.0%
	GCCAACAGGGGAGCTGAGAG+AGG	-	chr2_2:12486033-12486052	None:intergenic	65.0%
	GGGGCTGAGGATGCGAAAGC+TGG	+	chr2_2:12486977-12486996	Msa0238660:CDS	65.0%
	CTCCGCTATAGCGGCCGGTG+CGG	-	chr2_2:12485674-12485693	None:intergenic	70.0%
!	GGCCGCACCGGCCGCTATAG+CGG	+	chr2_2:12485669-12485688	Msa0238660:intron	75.0%
	ACCACTGCGCCAGGCCGCGT+CGG	+	chr2_2:12485712-12485731	Msa0238660:intron	75.0%
	TGATACCCGCCGACGCGGCC+TGG	-	chr2_2:12485724-12485743	None:intergenic	75.0%
!	ACTGCGCCAGGCCGCGTCGG+CGG	+	chr2_2:12485715-12485734	Msa0238660:intron	80.0%
!	GCCGACGCGGCCTGGCGCAG+TGG	-	chr2_2:12485716-12485735	None:intergenic	85.0%
!!	CTGCGCCAGGCCGCGTCGGC+GGG	+	chr2_2:12485716-12485735	Msa0238660:intron	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	12484563	12487616	12484563	ID=Msa0238660;Name=Msa0238660
chr2_2	mRNA	12484563	12487616	12484563	ID=Msa0238660-mRNA-1;Parent=Msa0238660;Name=Msa0238660-mRNA-1;_AED=0.11;_eAED=0.11;_QI=119\|1\|1\|1\|0\|1\|2\|361\|222
chr2_2	exon	12484563	12484967	12484563	ID=Msa0238660-mRNA-1:exon:5254;Parent=Msa0238660-mRNA-1
chr2_2	exon	12486873	12487616	12486873	ID=Msa0238660-mRNA-1:exon:5255;Parent=Msa0238660-mRNA-1
chr2_2	five_prime_UTR	12484563	12484681	12484563	ID=Msa0238660-mRNA-1:five_prime_utr;Parent=Msa0238660-mRNA-1
chr2_2	CDS	12484682	12484967	12484682	ID=Msa0238660-mRNA-1:cds;Parent=Msa0238660-mRNA-1
chr2_2	CDS	12486873	12487255	12486873	ID=Msa0238660-mRNA-1:cds;Parent=Msa0238660-mRNA-1
chr2_2	three_prime_UTR	12487256	12487616	12487256	ID=Msa0238660-mRNA-1:three_prime_utr;Parent=Msa0238660-mRNA-1

Gene Sequence

>Msa0238660

ATGATTCATCTATTATTCACAGTGATTTTTTCAGAAGCAACAATGATCGCATTGCTGTTATTCAAGACCCCATTGAGGAAGCTTGTAATAATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAAGATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA

Protein sequence

>Msa0238660

MIHLLFTVIFSEATMIALLLFKTPLRKLVIMALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEDGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM*