AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468410 MtrunA17_Chr3g0121191 86.512 215 19 2 3 207 5 219 5.79e-110 321
Msa0468410 MtrunA17_Chr3g0121191 44.509 173 62 4 207 369 13 161 7.28e-24 98.6
Msa0468410 MtrunA17_Chr8g0391691 56.818 132 47 1 81 202 36 167 1.24e-40 142
Msa0468410 MtrunA17_Chr1g0161211 50.000 138 59 1 81 208 46 183 6.38e-35 127
Msa0468410 MtrunA17_Chr3g0111371 39.286 140 69 3 81 210 5 138 5.14e-24 96.3
Msa0468410 MtrunA17_Chr5g0434951 37.226 137 71 3 81 205 4 137 1.14e-21 89.7
Msa0468410 MtrunA17_Chr5g0402331 35.032 157 90 3 61 206 28 183 1.24e-21 91.3
Msa0468410 MtrunA17_Chr5g0402361 35.758 165 90 5 61 212 28 189 6.56e-21 92.8
Msa0468410 MtrunA17_Chr5g0402361 34.395 157 91 2 61 206 200 355 4.51e-20 90.5
Msa0468410 MtrunA17_Chr4g0057641 38.406 138 70 4 80 205 5 139 2.55e-20 86.3
Msa0468410 MtrunA17_Chr1g0169581 32.857 140 82 2 78 205 1 140 2.58e-20 86.3
Msa0468410 MtrunA17_Chr8g0392951 34.266 143 83 2 81 213 24 165 3.07e-20 86.7
Msa0468410 MtrunA17_Chr4g0057651 39.568 139 69 4 79 205 4 139 3.93e-20 85.9
Msa0468410 MtrunA17_Chr4g0057661 38.406 138 70 4 80 205 5 139 2.75e-19 83.6
Msa0468410 MtrunA17_Chr7g0225921 34.532 139 75 5 81 206 6 141 5.19e-18 79.7
Msa0468410 MtrunA17_Chr1g0169621 32.121 165 75 4 78 205 1 165 1.21e-17 79.7
Msa0468410 MtrunA17_Chr1g0188171 32.857 140 84 1 80 209 11 150 2.42e-17 78.2
Msa0468410 MtrunA17_Chr1g0188171 44.118 68 38 0 138 205 6 73 4.06e-11 60.8
Msa0468410 MtrunA17_Chr4g0033601 33.566 143 71 4 81 205 5 141 4.39e-17 77.4
Msa0468410 MtrunA17_Chr7g0245911 35.417 144 74 3 81 205 47 190 1.01e-16 77.8
Msa0468410 MtrunA17_Chr1g0166281 32.847 137 82 1 80 206 11 147 1.55e-16 76.3
Msa0468410 MtrunA17_Chr6g0482731 32.143 140 75 3 81 205 26 160 2.18e-16 76.3
Msa0468410 MtrunA17_Chr3g0093271 32.847 137 82 1 81 207 63 199 3.99e-16 76.3
Msa0468410 MtrunA17_Chr3g0093271 42.105 76 44 0 138 213 57 132 1.71e-12 65.9
Msa0468410 MtrunA17_Chr8g0336891 47.059 102 38 3 216 301 105 206 1.38e-15 75.5
Msa0468410 MtrunA17_Chr6g0459231 35.556 135 72 4 84 206 11 142 1.54e-15 73.2
Msa0468410 MtrunA17_Chr5g0440931 32.847 137 82 1 81 207 12 148 1.85e-15 73.2
Msa0468410 MtrunA17_Chr5g0440931 43.421 76 43 0 138 213 6 81 7.45e-13 65.9
Msa0468410 MtrunA17_Chr6g0460211 32.847 137 82 1 81 207 12 148 2.21e-15 72.8
Msa0468410 MtrunA17_Chr6g0460211 42.105 76 44 0 138 213 6 81 2.67e-12 63.9
Msa0468410 MtrunA17_Chr7g0254731 32.117 137 83 1 81 207 12 148 3.22e-15 72.4
Msa0468410 MtrunA17_Chr7g0254731 45.588 68 37 0 138 205 6 73 2.20e-12 64.3
Msa0468410 MtrunA17_Chr4g0062221 33.103 145 83 4 81 213 11 153 3.36e-15 72.8
Msa0468410 MtrunA17_Chr3g0116151 34.586 133 76 4 83 205 8 139 5.20e-15 71.6
Msa0468410 MtrunA17_Chr3g0116141 34.586 133 76 4 83 205 7 138 7.11e-15 71.2
Msa0468410 MtrunA17_Chr7g0256701 30.612 147 87 3 78 209 70 216 1.65e-14 72.0
Msa0468410 MtrunA17_Chr3g0125311 30.000 150 83 4 81 208 13 162 5.34e-14 69.3
Msa0468410 MtrunA17_Chr7g0256171 32.026 153 80 3 81 215 5 151 7.05e-14 68.6
Msa0468410 MtrunA17_Chr8g0351681 33.333 147 76 5 81 207 49 193 8.99e-14 69.3
Msa0468410 MtrunA17_Chr4g0044961 31.159 138 83 3 81 208 57 192 1.07e-13 69.3
Msa0468410 MtrunA17_Chr5g0409441 31.126 151 77 4 78 205 10 156 2.53e-13 67.4
Msa0468410 MtrunA17_Chr1g0185001 32.593 135 70 5 89 208 20 148 3.27e-13 66.6
Msa0468410 MtrunA17_Chr1g0160151 30.282 142 85 3 81 208 22 163 7.09e-13 66.2
Msa0468410 MtrunA17_Chr8g0336901 46.667 75 30 2 237 301 19 93 9.75e-13 65.1
Msa0468410 MtrunA17_Chr3g0121181 65.854 41 14 0 166 206 5 45 3.13e-12 60.8
Msa0468410 MtrunA17_Chr8g0366401 29.851 134 81 2 81 201 17 150 5.17e-12 63.5
Msa0468410 MtrunA17_Chr2g0329371 32.414 145 72 5 81 205 64 202 6.28e-12 64.3
Msa0468410 MtrunA17_Chr1g0157131 33.088 136 75 4 82 205 380 511 8.93e-12 66.2
Msa0468410 MtrunA17_Chr4g0074811 35.714 140 66 6 82 205 397 528 9.43e-12 66.2
Msa0468410 MtrunA17_Chr4g0064231 31.373 153 77 5 81 205 64 216 9.73e-12 64.3
Msa0468410 MtrunA17_Chr5g0444171 34.694 147 75 7 74 205 389 529 1.97e-11 65.5
Msa0468410 MtrunA17_Chr7g0274101 32.051 156 87 2 62 207 2 148 2.16e-11 61.6
Msa0468410 MtrunA17_Chr7g0245231 35.106 94 55 1 138 231 24 111 2.75e-11 61.6
Msa0468410 MtrunA17_Chr5g0396261 40.323 62 37 0 143 204 51 112 2.88e-11 60.1
Msa0468410 MtrunA17_Chr6g0450921 37.079 89 50 1 143 231 28 110 5.95e-11 60.8
Msa0468410 MtrunA17_Chr5g0397101 34.058 138 71 5 82 205 372 503 7.24e-11 63.5
Msa0468410 MtrunA17_Chr7g0245371 29.054 148 83 5 80 205 23 170 7.28e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468410 AT1G24620.1 41.667 180 82 5 49 209 1 176 1.71e-32 120
Msa0468410 AT1G66400.1 38.065 155 78 4 72 210 4 156 5.60e-26 102
Msa0468410 AT5G37770.1 34.752 141 74 3 81 205 17 155 1.83e-21 90.5
Msa0468410 AT5G37770.2 34.752 141 74 3 81 205 17 155 1.83e-21 90.5
Msa0468410 AT1G18210.2 34.815 135 74 2 81 205 23 153 1.69e-20 88.2
Msa0468410 AT1G18210.1 34.815 135 74 2 81 205 23 153 1.69e-20 88.2
Msa0468410 AT1G73630.1 32.051 156 87 3 77 222 16 162 5.97e-20 86.3
Msa0468410 AT2G41410.1 36.170 141 77 3 81 208 70 210 5.44e-18 82.4
Msa0468410 AT2G43290.1 34.507 142 76 3 81 205 65 206 1.43e-17 80.9
Msa0468410 AT4G03290.1 36.000 150 69 4 81 209 5 148 9.73e-17 77.0
Msa0468410 AT2G27030.3 33.094 139 83 1 81 209 12 150 5.08e-16 75.9
Msa0468410 AT2G27030.3 45.588 68 37 0 138 205 6 73 8.45e-12 63.9
Msa0468410 AT1G66410.1 33.577 137 81 1 81 207 12 148 5.10e-16 75.1
Msa0468410 AT1G66410.1 43.421 76 43 0 138 213 6 81 8.06e-13 65.9
Msa0468410 AT5G37780.1 33.577 137 81 1 81 207 12 148 5.10e-16 75.1
Msa0468410 AT5G37780.1 43.421 76 43 0 138 213 6 81 8.06e-13 65.9
Msa0468410 AT3G59440.1 34.058 138 78 3 80 205 50 186 8.82e-16 75.5
Msa0468410 AT5G21274.1 33.577 137 81 1 81 207 12 148 1.15e-15 73.9
Msa0468410 AT5G21274.1 42.105 76 44 0 138 213 6 81 3.69e-12 63.9
Msa0468410 AT2G15680.1 34.286 140 75 5 81 208 50 184 1.20e-15 75.1
Msa0468410 AT3G43810.2 32.374 139 84 1 81 209 12 150 1.20e-15 75.5
Msa0468410 AT3G43810.2 45.588 68 37 0 138 205 6 73 8.48e-12 64.7
Msa0468410 AT4G14640.1 31.618 136 83 1 81 206 13 148 1.60e-15 73.6
Msa0468410 AT3G10190.1 36.111 144 75 4 80 209 69 209 2.26e-15 74.7
Msa0468410 AT3G56800.1 32.847 137 82 1 81 207 12 148 2.41e-15 73.2
Msa0468410 AT3G56800.1 42.105 76 44 0 138 213 6 81 3.09e-12 64.3
Msa0468410 AT2G41110.1 32.847 137 82 1 81 207 12 148 2.41e-15 73.2
Msa0468410 AT2G41110.1 42.105 76 44 0 138 213 6 81 3.09e-12 64.3
Msa0468410 AT2G27030.1 32.847 137 82 1 81 207 12 148 2.41e-15 73.2
Msa0468410 AT2G27030.1 42.105 76 44 0 138 213 6 81 3.09e-12 64.3
Msa0468410 AT3G43810.1 32.847 137 82 1 81 207 12 148 3.06e-15 72.8
Msa0468410 AT3G43810.1 42.105 76 44 0 138 213 6 81 3.69e-12 63.9
Msa0468410 AT1G05990.1 36.806 144 66 5 81 205 5 142 6.30e-15 72.0
Msa0468410 AT3G22930.1 30.216 139 87 1 80 208 34 172 1.06e-14 72.0
Msa0468410 AT4G12860.1 32.867 143 72 3 81 205 5 141 4.03e-14 69.7
Msa0468410 AT1G66410.4 36.735 98 62 0 110 207 15 112 7.09e-14 67.8
Msa0468410 AT1G66410.3 36.735 98 62 0 110 207 15 112 7.09e-14 67.8
Msa0468410 AT5G37780.4 36.735 98 62 0 110 207 38 135 1.28e-13 67.8
Msa0468410 AT5G17470.1 30.137 146 86 4 80 211 1 144 1.44e-13 68.2
Msa0468410 AT3G07490.1 33.103 145 73 3 79 205 3 141 1.46e-13 68.2
Msa0468410 AT1G66410.2 36.735 98 62 0 110 207 61 158 2.73e-13 67.4
Msa0468410 AT5G37780.2 36.735 98 62 0 110 207 66 163 3.31e-13 67.4
Msa0468410 AT3G43810.4 35.714 98 63 0 110 207 15 112 3.46e-13 65.9
Msa0468410 AT3G43810.3 35.714 98 63 0 110 207 15 112 3.46e-13 65.9
Msa0468410 AT5G37780.3 36.735 98 62 0 110 207 77 174 4.30e-13 67.4
Msa0468410 AT2G36180.1 32.812 128 57 3 81 205 36 137 4.47e-13 66.6
Msa0468410 AT4G14640.2 34.021 97 64 0 110 206 34 130 4.84e-13 66.2
Msa0468410 AT1G32250.1 31.915 141 72 4 81 201 16 152 7.97e-13 66.2
Msa0468410 AT2G41110.2 35.714 98 63 0 110 207 63 160 1.00e-12 65.9
Msa0468410 AT3G50770.1 31.677 161 90 5 66 207 46 205 1.31e-12 66.6
Msa0468410 AT2G41100.7 31.818 154 74 4 81 205 66 217 2.33e-12 67.4
Msa0468410 AT2G41100.6 31.818 154 74 4 81 205 66 217 2.33e-12 67.4
Msa0468410 AT2G41100.3 31.818 154 74 4 81 205 66 217 2.33e-12 67.4
Msa0468410 AT1G76650.2 32.283 127 81 3 81 205 43 166 4.36e-12 64.3
Msa0468410 AT2G41100.4 31.818 154 74 4 81 205 101 252 4.50e-12 67.0
Msa0468410 AT2G41100.1 31.818 154 74 4 81 205 101 252 4.50e-12 67.0
Msa0468410 AT4G04695.1 33.793 145 72 6 82 210 337 473 7.71e-12 67.0
Msa0468410 AT5G42380.1 32.877 146 79 5 73 205 45 184 1.17e-11 63.5
Msa0468410 AT1G76040.1 32.639 144 81 4 82 213 179 318 2.41e-11 64.7
Msa0468410 AT1G76040.4 32.639 144 81 4 82 213 179 318 2.41e-11 64.7
Msa0468410 AT4G04740.4 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT4G04740.6 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT4G04740.5 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT4G04740.3 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT4G04740.1 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT4G04740.7 31.325 166 91 8 69 217 360 519 2.42e-11 65.5
Msa0468410 AT5G19360.1 33.117 154 82 5 82 218 374 523 2.88e-11 65.1
Msa0468410 AT4G21940.1 33.333 138 72 5 82 205 407 538 4.86e-11 64.7
Msa0468410 AT1G50700.1 31.210 157 87 6 74 215 370 520 4.96e-11 64.3
Msa0468410 AT4G21940.2 33.333 138 72 5 82 205 407 538 4.98e-11 64.7
Msa0468410 AT3G51920.1 34.737 95 62 0 114 208 55 149 5.72e-11 60.8
Msa0468410 AT4G04700.1 32.886 149 76 6 82 214 337 477 6.14e-11 63.9
Msa0468410 AT3G51850.1 32.331 133 75 3 85 205 363 492 6.31e-11 64.3
Msa0468410 AT3G20410.2 33.333 147 77 6 74 205 388 528 6.84e-11 63.9
Msa0468410 AT3G20410.1 33.333 147 77 6 74 205 388 528 6.84e-11 63.9
Msa0468410 AT1G76040.2 33.333 144 80 5 82 213 417 556 8.22e-11 63.9
Msa0468410 AT2G41100.2 27.481 131 84 2 76 205 7 127 8.93e-11 61.2

Find 79 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATAAACTGTTTACCATTT+TGG 0.147897 3_3:-70044360 Msa0468410:CDS
CTATTGTCACTTTGGCCTTA+TGG 0.176207 3_3:-70044136 Msa0468410:CDS
TCATATGATATGGCAATAAT+TGG 0.218393 3_3:-70047073 Msa0468410:five_prime_UTR
GACCTTGCAATCACCTTCTT+TGG 0.242281 3_3:+70043971 None:intergenic
GATGAATGTGAAAGAATTAT+TGG 0.254128 3_3:-70046294 Msa0468410:CDS
TTATTGTATATTTCTTACTA+TGG 0.258217 3_3:-70044280 Msa0468410:CDS
AATTCTTTCACATTCATCTA+AGG 0.287517 3_3:+70046299 None:intergenic
ATCTGATCTAAGAGCGATAA+TGG 0.288423 3_3:-70043943 Msa0468410:CDS
CGCTATACTTAATTTATTAT+CGG 0.293867 3_3:-70047104 Msa0468410:five_prime_UTR
AGAGGAAATGGAAAACTTAA+AGG 0.303204 3_3:-70046412 Msa0468410:CDS
AATGAAACGTTCAACCCTAA+TGG 0.318380 3_3:+70044232 None:intergenic
TGCTTAGCTCAATAAATTCT+TGG 0.338403 3_3:+70043871 None:intergenic
GTTTACCAAGGCAGCCAAAA+TGG 0.338846 3_3:+70044346 None:intergenic
AATAACCGCGGCGATGAAAT+AGG 0.342707 3_3:+70044298 None:intergenic
CAATGTCAACACATTGGAAT+TGG 0.350732 3_3:-70046610 Msa0468410:CDS
AAAGATGACAACAACGATAA+TGG 0.356762 3_3:+70046668 None:intergenic
CAGCTACGGAGAAACAAAAT+TGG 0.368263 3_3:-70046639 Msa0468410:CDS
CTATGAATCTGAAGAGGAAA+TGG 0.373890 3_3:-70046424 Msa0468410:CDS
ACTATTATATTCTTAAAGTT+AGG 0.380920 3_3:-70047038 Msa0468410:five_prime_UTR
CGGATTATCTGAGTTGGAAT+TGG 0.386893 3_3:+70046966 None:intergenic
GGGGTTTCGTTCATATGATA+TGG 0.387148 3_3:-70047083 Msa0468410:five_prime_UTR
ATAGATTGTGTATTGTTGTT+TGG 0.388629 3_3:+70046701 None:intergenic
GCTATACTTAATTTATTATC+GGG 0.388673 3_3:-70047103 Msa0468410:five_prime_UTR
ATAGGTCGTATAGTGTTGTT+TGG 0.404071 3_3:+70044316 None:intergenic
CAATTCCAACTCAGATAATC+CGG 0.409288 3_3:-70046965 Msa0468410:CDS
AAGAGCGATAATGGGAAAGT+TGG 0.422840 3_3:-70043934 Msa0468410:CDS
CGCGTAGAGTATTGTTTAGT+AGG 0.425049 3_3:+70047125 None:intergenic
CAACATTGCTATTGTCACTT+TGG 0.428619 3_3:-70044144 Msa0468410:CDS
ATGAAACGTTCAACCCTAAT+GGG 0.429600 3_3:+70044233 None:intergenic
ATTTCAGTCTTACTCTTACT+AGG 0.444327 3_3:-70044206 Msa0468410:intron
ATAACGGGAAAGTTGGATAT+AGG 0.451167 3_3:-70046516 Msa0468410:CDS
GATGACGTTGATGGCATTGA+TGG 0.458924 3_3:-70046492 Msa0468410:CDS
TGCTAACAAAACAGCTAAAA+CGG 0.465298 3_3:+70046755 None:intergenic
ACTCAGATAATCCGGCTTCA+AGG 0.465470 3_3:-70046957 Msa0468410:intron
GAGGAAATGGAAAACTTAAA+GGG 0.465725 3_3:-70046411 Msa0468410:CDS
ATAATGGGAAAGTTGGGTAT+AGG 0.468705 3_3:-70043927 Msa0468410:CDS
ACTCCAGTAATCCAGTTTCA+AGG 0.469240 3_3:-70044553 Msa0468410:intron
AAAAGGATCAAAAGCAATGA+AGG 0.473441 3_3:-70046819 Msa0468410:intron
AAGCGTATTAAGCTCCTTTG+CGG 0.477365 3_3:+70046347 None:intergenic
GCATTGAATTACACAGAAGC+TGG 0.479418 3_3:-70046735 Msa0468410:CDS
GAGATCGATAACGGGAAAGT+TGG 0.487971 3_3:-70046523 Msa0468410:CDS
CTCAGATCTGAGATCGATAA+CGG 0.493665 3_3:-70046532 Msa0468410:CDS
TCTGATCTAAGAGCGATAAT+GGG 0.494788 3_3:-70043942 Msa0468410:CDS
TCAGATCTGAGATCGATAAC+GGG 0.497355 3_3:-70046531 Msa0468410:CDS
CGAGGTTCTGACCTTGAAGC+CGG 0.497573 3_3:+70046946 None:intergenic
GATATAGGAGATGACGTTGA+TGG 0.498114 3_3:-70046501 Msa0468410:CDS
AGAGCGATAATGGGAAAGTT+GGG 0.504415 3_3:-70043933 Msa0468410:CDS
AAGCAATGAAGGAAAGTTGA+AGG 0.508377 3_3:-70046808 Msa0468410:CDS
TATAAATACAGTGAGCCATA+AGG 0.509742 3_3:+70044121 None:intergenic
TGAACTAGTGTTTAAAGACT+TGG 0.513250 3_3:-70044393 Msa0468410:CDS
AATACGCTTATGAGAAGCAT+TGG 0.523714 3_3:-70046333 Msa0468410:CDS
TGAAGCCGGATTATCTGAGT+TGG 0.528924 3_3:+70046960 None:intergenic
CAACACATTGGAATTGGAGA+TGG 0.533055 3_3:-70046604 Msa0468410:CDS
AAGAAATTGGAGACCAAAGA+AGG 0.535558 3_3:-70043984 Msa0468410:CDS
AAACAGTTTATATAAGATGT+TGG 0.539608 3_3:+70044370 None:intergenic
GAAGAAGAAAGTCATTCTGA+TGG 0.561016 3_3:-70046992 Msa0468410:exon
CTCTTCAGTTTCAGAATGTG+TGG 0.566849 3_3:+70043848 None:intergenic
TTGATAGTGATGGTGATGGT+AGG 0.571325 3_3:-70046266 Msa0468410:CDS
CTATACTTAATTTATTATCG+GGG 0.576985 3_3:-70047102 Msa0468410:five_prime_UTR
GACCAAAGAAGGTGATTGCA+AGG 0.582968 3_3:-70043973 Msa0468410:CDS
GTTGCTTGAAATAAGTAGCA+AGG 0.584934 3_3:+70044163 None:intergenic
AACAAACTATGAATCTGAAG+AGG 0.586456 3_3:-70046430 Msa0468410:CDS
GTGTATGACATTGATGGCGA+TGG 0.590310 3_3:-70046378 Msa0468410:CDS
CACACATTCTGAAACTGAAG+AGG 0.599111 3_3:-70043847 Msa0468410:CDS
CAATGTCAATGTCAACACAT+TGG 0.601927 3_3:-70046616 Msa0468410:CDS
TTCAAGAAATTGGACACAGA+TGG 0.611437 3_3:-70046573 Msa0468410:CDS
TGAAGGAAAGTTGAAGGACA+TGG 0.612935 3_3:-70046802 Msa0468410:CDS
ATTGGTCGTGTTGATAGTGA+TGG 0.614485 3_3:-70046276 Msa0468410:CDS
CGATGGTTTCATCACCGCAA+AGG 0.626557 3_3:-70046361 Msa0468410:CDS
AAGTAGCAAGGCTAAACATG+AGG 0.635088 3_3:+70044175 None:intergenic
CGTGTTGATAGTGATGGTGA+TGG 0.638546 3_3:-70046270 Msa0468410:CDS
TTTGGAAAGCTTGTTTACCA+AGG 0.645930 3_3:+70044334 None:intergenic
AAATTGGACACAGATGGTGA+TGG 0.649231 3_3:-70046567 Msa0468410:CDS
GACGTTGATGGCATTGATGG+AGG 0.660924 3_3:-70046489 Msa0468410:CDS
GATGACAACAACGATAATGG+AGG 0.662741 3_3:+70046671 None:intergenic
ATAGGAGACGATGTTGACAA+CGG 0.711944 3_3:-70043909 Msa0468410:CDS
GGAGACGATGTTGACAACGG+AGG 0.719496 3_3:-70043906 Msa0468410:CDS
TAAGAAATATACAATAACCG+CGG 0.725581 3_3:+70044286 None:intergenic
TACGACCTATTTCATCGCCG+CGG 0.727735 3_3:-70044303 Msa0468410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACAAAAAAC+CGG + chr3_3:70045506-70045525 None:intergenic 10.0%
!! TATATTGAATTTATTATACA+GGG - chr3_3:70046314-70046333 Msa0468410:CDS 10.0%
!! ACTATTATATTCTTAAAGTT+AGG - chr3_3:70043919-70043938 Msa0468410:CDS 15.0%
!!! AATCATTTTGTATAAGATTT+TGG + chr3_3:70044181-70044200 None:intergenic 15.0%
!!! AATTGTGTTGTTATTTTTTT+TGG - chr3_3:70044857-70044876 Msa0468410:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr3_3:70045144-70045163 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr3_3:70045143-70045162 Msa0468410:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr3_3:70045167-70045186 Msa0468410:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr3_3:70045270-70045289 Msa0468410:intron 15.0%
!! CTATATTGAATTTATTATAC+AGG - chr3_3:70046313-70046332 Msa0468410:CDS 15.0%
!!! TAACTTGTTTTAATTTTGAA+AGG + chr3_3:70046475-70046494 None:intergenic 15.0%
!! TTATTGTATATTTCTTACTA+TGG - chr3_3:70046677-70046696 Msa0468410:intron 15.0%
!!! ATATATAATTATCGATTTCA+AGG - chr3_3:70046868-70046887 Msa0468410:intron 15.0%
!! CGCTATACTTAATTTATTAT+CGG - chr3_3:70043853-70043872 Msa0468410:CDS 20.0%
!! GCTATACTTAATTTATTATC+GGG - chr3_3:70043854-70043873 Msa0468410:CDS 20.0%
!! CTATACTTAATTTATTATCG+GGG - chr3_3:70043855-70043874 Msa0468410:CDS 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr3_3:70045153-70045172 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr3_3:70045230-70045249 Msa0468410:intron 20.0%
!! ATCAAAATTAGATACATACT+AGG - chr3_3:70045568-70045587 Msa0468410:intron 20.0%
!! TCAAAATTAGATACATACTA+GGG - chr3_3:70045569-70045588 Msa0468410:intron 20.0%
!! GATAATCGTTAATTTAGTTA+AGG + chr3_3:70045772-70045791 None:intergenic 20.0%
!! GTTTCTATTAGAAAAAACAA+TGG - chr3_3:70045868-70045887 Msa0468410:intron 20.0%
!! ATGACTTATATTCAAATGTT+TGG - chr3_3:70046125-70046144 Msa0468410:intron 20.0%
!! TGTTGTTAACAAATTGAAAA+AGG - chr3_3:70046160-70046179 Msa0468410:intron 20.0%
!!! TGATGTTTTAGATATTGTTT+AGG + chr3_3:70046194-70046213 None:intergenic 20.0%
!! AAACAGTTTATATAAGATGT+TGG + chr3_3:70046590-70046609 None:intergenic 20.0%
!!! ATATAAACTGTTTACCATTT+TGG - chr3_3:70046597-70046616 Msa0468410:CDS 20.0%
!!! TATTTTAAAACAACCCATTA+GGG - chr3_3:70046711-70046730 Msa0468410:CDS 20.0%
! TCATATGATATGGCAATAAT+TGG - chr3_3:70043884-70043903 Msa0468410:CDS 25.0%
! TTTGAACTTGAAAGGTAAAA+TGG + chr3_3:70044067-70044086 None:intergenic 25.0%
!!! TTTTTTGTTTTCCCTCAAAA+AGG - chr3_3:70044121-70044140 Msa0468410:intron 25.0%
!! ATAGATTGTGTATTGTTGTT+TGG + chr3_3:70044259-70044278 None:intergenic 25.0%
! TCATCTTTATTAATCAGCTA+CGG - chr3_3:70044304-70044323 Msa0468410:CDS 25.0%
! AATTCTTTCACATTCATCTA+AGG + chr3_3:70044661-70044680 None:intergenic 25.0%
! GATGAATGTGAAAGAATTAT+TGG - chr3_3:70044663-70044682 Msa0468410:intron 25.0%
!!! GATTTTAGAATCATGATGAT+GGG - chr3_3:70044726-70044745 Msa0468410:intron 25.0%
!!! GTGTTGTTATTTTTTTTGGT+TGG - chr3_3:70044861-70044880 Msa0468410:intron 25.0%
! TGTTGATGTTATTCATGATA+TGG - chr3_3:70044900-70044919 Msa0468410:intron 25.0%
! ATGGATCATTAAAAAAAGAG+AGG - chr3_3:70044981-70045000 Msa0468410:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr3_3:70045110-70045129 Msa0468410:intron 25.0%
! GGTGAAGATGTTAAAAAAAA+TGG + chr3_3:70045537-70045556 None:intergenic 25.0%
!!! TAATTTTGATTTGCCAATCA+TGG + chr3_3:70045558-70045577 None:intergenic 25.0%
! TCATGACTAAATAATTGGTT+CGG + chr3_3:70045654-70045673 None:intergenic 25.0%
! CATGTTCATGACTAAATAAT+TGG + chr3_3:70045659-70045678 None:intergenic 25.0%
!!! GACAAGATCAAATTGATTTT+AGG - chr3_3:70045738-70045757 Msa0468410:intron 25.0%
! AATCGTTAATTTAGTTAAGG+TGG + chr3_3:70045769-70045788 None:intergenic 25.0%
! AACAATGGTATAGTAATAGT+TGG - chr3_3:70045883-70045902 Msa0468410:intron 25.0%
! ACAAAAAGAATTGTTTGCAA+TGG + chr3_3:70046089-70046108 None:intergenic 25.0%
!! CAAGTTACTAACTATAGTTT+TGG - chr3_3:70046488-70046507 Msa0468410:CDS 25.0%
!!! TTTGTTTTTTGTTTTCCCTT+TGG - chr3_3:70046524-70046543 Msa0468410:CDS 25.0%
! TAAGAAATATACAATAACCG+CGG + chr3_3:70046674-70046693 None:intergenic 25.0%
!!! CTATTTTAAAACAACCCATT+AGG - chr3_3:70046710-70046729 Msa0468410:CDS 25.0%
! GGAAAAAATCTTCAAGAAAT+TGG - chr3_3:70046960-70046979 Msa0468410:CDS 25.0%
!! CTAACTTGTTTGAACTTGAA+AGG + chr3_3:70044075-70044094 None:intergenic 30.0%
!! TTGCTTTTGATCCTTTTTGA+GGG + chr3_3:70044135-70044154 None:intergenic 30.0%
!! ATTGCTTTTGATCCTTTTTG+AGG + chr3_3:70044136-70044155 None:intergenic 30.0%
AAAAGGATCAAAAGCAATGA+AGG - chr3_3:70044138-70044157 Msa0468410:CDS 30.0%
TGCTAACAAAACAGCTAAAA+CGG + chr3_3:70044205-70044224 None:intergenic 30.0%
AAAGATGACAACAACGATAA+TGG + chr3_3:70044292-70044311 None:intergenic 30.0%
GGAAAAACTCTTCAAGAAAT+TGG - chr3_3:70044374-70044393 Msa0468410:CDS 30.0%
AACAAACTATGAATCTGAAG+AGG - chr3_3:70044527-70044546 Msa0468410:intron 30.0%
AGAGGAAATGGAAAACTTAA+AGG - chr3_3:70044545-70044564 Msa0468410:intron 30.0%
GAGGAAATGGAAAACTTAAA+GGG - chr3_3:70044546-70044565 Msa0468410:intron 30.0%
! TTTTCTGTGTATGACATTGA+TGG - chr3_3:70044573-70044592 Msa0468410:intron 30.0%
!!! GGATTTTAGAATCATGATGA+TGG - chr3_3:70044725-70044744 Msa0468410:intron 30.0%
TTTGATGTTGGACTCTATTA+TGG + chr3_3:70044758-70044777 None:intergenic 30.0%
AGAAATGTCAAGTTTGATGT+TGG + chr3_3:70044770-70044789 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr3_3:70045061-70045080 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr3_3:70045062-70045081 Msa0468410:intron 30.0%
TTTAACATCTTCACCATGAT+TGG - chr3_3:70045542-70045561 Msa0468410:intron 30.0%
ACTAGGGATGTATTAGAAAT+AGG - chr3_3:70045585-70045604 Msa0468410:intron 30.0%
GGATGTATTAGAAATAGGTT+AGG - chr3_3:70045590-70045609 Msa0468410:intron 30.0%
TATTAGAAATAGGTTAGGTC+TGG - chr3_3:70045595-70045614 Msa0468410:intron 30.0%
! GTTCGGTCTAATTTAAGATT+GGG + chr3_3:70045637-70045656 None:intergenic 30.0%
GACGTAATACATGTTCAATA+AGG - chr3_3:70045700-70045719 Msa0468410:intron 30.0%
AATAAGGATGAGATGATACA+AGG - chr3_3:70045716-70045735 Msa0468410:intron 30.0%
! TTGCTAATATTTGCCATTTC+TGG - chr3_3:70045799-70045818 Msa0468410:intron 30.0%
! TGCTAATATTTGCCATTTCT+GGG - chr3_3:70045800-70045819 Msa0468410:intron 30.0%
TCATAATTTGAACCCAGAAA+TGG + chr3_3:70045815-70045834 None:intergenic 30.0%
! GTCTTCTTTACTTTATTTCC+TGG - chr3_3:70046249-70046268 Msa0468410:CDS 30.0%
GTTATTGAAAAGAAAGTTCC+AGG + chr3_3:70046270-70046289 None:intergenic 30.0%
TCGGAATATATTTATGCAGT+CGG + chr3_3:70046369-70046388 None:intergenic 30.0%
ACTGCATAAATATATTCCGA+TGG - chr3_3:70046369-70046388 Msa0468410:CDS 30.0%
!!! TTTTGTTTTCCCTTTGGAAA+AGG - chr3_3:70046530-70046549 Msa0468410:CDS 30.0%
TGAACTAGTGTTTAAAGACT+TGG - chr3_3:70046564-70046583 Msa0468410:CDS 30.0%
AGTAAGAGTAAGACTGAAAT+TGG + chr3_3:70046751-70046770 None:intergenic 30.0%
ATTTCAGTCTTACTCTTACT+AGG - chr3_3:70046751-70046770 Msa0468410:CDS 30.0%
TATAAATACAGTGAGCCATA+AGG + chr3_3:70046839-70046858 None:intergenic 30.0%
TGCTTAGCTCAATAAATTCT+TGG + chr3_3:70044506-70044525 None:intergenic 30.0%
GAAGAAGAAAGTCATTCTGA+TGG - chr3_3:70043965-70043984 Msa0468410:CDS 35.0%
CAATTCCAACTCAGATAATC+CGG - chr3_3:70043992-70044011 Msa0468410:CDS 35.0%
AAGCAATGAAGGAAAGTTGA+AGG - chr3_3:70044149-70044168 Msa0468410:CDS 35.0%
CAATGTCAATGTCAACACAT+TGG - chr3_3:70044341-70044360 Msa0468410:CDS 35.0%
CAATGTCAACACATTGGAAT+TGG - chr3_3:70044347-70044366 Msa0468410:CDS 35.0%
TTCAAGAAATTGGACACAGA+TGG - chr3_3:70044384-70044403 Msa0468410:CDS 35.0%
! ATAACGGGAAAGTTGGATAT+AGG - chr3_3:70044441-70044460 Msa0468410:intron 35.0%
CTATGAATCTGAAGAGGAAA+TGG - chr3_3:70044533-70044552 Msa0468410:intron 35.0%
! AATACGCTTATGAGAAGCAT+TGG - chr3_3:70044624-70044643 Msa0468410:intron 35.0%
!! TGATGGTAGGATTGATTTTG+AGG - chr3_3:70044704-70044723 Msa0468410:intron 35.0%
GTAGAATGAATTTGATCCAG+TGG + chr3_3:70044837-70044856 None:intergenic 35.0%
CATGATATGGTATGTAGAAG+TGG - chr3_3:70044913-70044932 Msa0468410:intron 35.0%
ACGAGAGTTAAGTACTAACA+TGG - chr3_3:70044962-70044981 Msa0468410:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr3_3:70045192-70045211 Msa0468410:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr3_3:70045196-70045215 Msa0468410:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr3_3:70045260-70045279 Msa0468410:intron 35.0%
TAGCATGACTGCTTAAAGTT+CGG - chr3_3:70045344-70045363 Msa0468410:intron 35.0%
TCGGTAATTGTCAGAAAACA+CGG - chr3_3:70045363-70045382 Msa0468410:intron 35.0%
ACAGTTATTCGCTTGGTATT+CGG - chr3_3:70045410-70045429 Msa0468410:intron 35.0%
! GGTTCGGTCTAATTTAAGAT+TGG + chr3_3:70045638-70045657 None:intergenic 35.0%
GTCGAGTTCAATTAGATTCA+CGG + chr3_3:70045683-70045702 None:intergenic 35.0%
! TTTTCGAAACCATCGCAAAA+TGG - chr3_3:70045976-70045995 Msa0468410:intron 35.0%
!! GTTGAAAAGTGGATTTGCTA+CGG + chr3_3:70046067-70046086 None:intergenic 35.0%
TGTTTGCAATGGTTGAAAAG+TGG + chr3_3:70046078-70046097 None:intergenic 35.0%
! TATACAGGGCATCATTATTG+TGG - chr3_3:70046328-70046347 Msa0468410:CDS 35.0%
TTATTGTGGCCATTTATACC+TGG - chr3_3:70046342-70046361 Msa0468410:CDS 35.0%
CGGAATATATTTATGCAGTC+GGG + chr3_3:70046368-70046387 None:intergenic 35.0%
TGGATTACTGGAGTTTGAAT+TGG + chr3_3:70046398-70046417 None:intergenic 35.0%
TAACCTTGAAACTGGATTAC+TGG + chr3_3:70046410-70046429 None:intergenic 35.0%
! TTTGGAAAGCTTGTTTACCA+AGG + chr3_3:70046626-70046645 None:intergenic 35.0%
! ATAGGTCGTATAGTGTTGTT+TGG + chr3_3:70046644-70046663 None:intergenic 35.0%
ATGAAACGTTCAACCCTAAT+GGG + chr3_3:70046727-70046746 None:intergenic 35.0%
AATGAAACGTTCAACCCTAA+TGG + chr3_3:70046728-70046747 None:intergenic 35.0%
GTTGCTTGAAATAAGTAGCA+AGG + chr3_3:70046797-70046816 None:intergenic 35.0%
! CAACATTGCTATTGTCACTT+TGG - chr3_3:70046813-70046832 Msa0468410:CDS 35.0%
TTTCAAGGAGAGAGAAACAA+TGG - chr3_3:70046883-70046902 Msa0468410:intron 35.0%
! TTTTTCCATCTCCAATTCCA+AGG + chr3_3:70044361-70044380 None:intergenic 35.0%
AAGAAATTGGAGACCAAAGA+AGG - chr3_3:70046973-70046992 Msa0468410:CDS 35.0%
ATCTGATCTAAGAGCGATAA+TGG - chr3_3:70047014-70047033 Msa0468410:five_prime_UTR 35.0%
TCTGATCTAAGAGCGATAAT+GGG - chr3_3:70047015-70047034 Msa0468410:five_prime_UTR 35.0%
! ATAATGGGAAAGTTGGGTAT+AGG - chr3_3:70047030-70047049 Msa0468410:five_prime_UTR 35.0%
!! CGCGTAGAGTATTGTTTAGT+AGG + chr3_3:70043835-70043854 None:intergenic 40.0%
GGGGTTTCGTTCATATGATA+TGG - chr3_3:70043874-70043893 Msa0468410:CDS 40.0%
! CGGATTATCTGAGTTGGAAT+TGG + chr3_3:70043994-70044013 None:intergenic 40.0%
CAATTCATAGTAGTGAAGCG+AGG + chr3_3:70044032-70044051 None:intergenic 40.0%
TGAAGGAAAGTTGAAGGACA+TGG - chr3_3:70044155-70044174 Msa0468410:CDS 40.0%
GCATTGAATTACACAGAAGC+TGG - chr3_3:70044222-70044241 Msa0468410:intron 40.0%
! GATGACAACAACGATAATGG+AGG + chr3_3:70044289-70044308 None:intergenic 40.0%
CAGCTACGGAGAAACAAAAT+TGG - chr3_3:70044318-70044337 Msa0468410:CDS 40.0%
CAACACATTGGAATTGGAGA+TGG - chr3_3:70044353-70044372 Msa0468410:CDS 40.0%
AAATTGGACACAGATGGTGA+TGG - chr3_3:70044390-70044409 Msa0468410:CDS 40.0%
! CTCAGATCTGAGATCGATAA+CGG - chr3_3:70044425-70044444 Msa0468410:intron 40.0%
! TCAGATCTGAGATCGATAAC+GGG - chr3_3:70044426-70044445 Msa0468410:intron 40.0%
GATATAGGAGATGACGTTGA+TGG - chr3_3:70044456-70044475 Msa0468410:intron 40.0%
AAGCGTATTAAGCTCCTTTG+CGG + chr3_3:70044613-70044632 None:intergenic 40.0%
!! ATTGGTCGTGTTGATAGTGA+TGG - chr3_3:70044681-70044700 Msa0468410:intron 40.0%
!! TTGATAGTGATGGTGATGGT+AGG - chr3_3:70044691-70044710 Msa0468410:intron 40.0%
TATCCATAGACAATTGCCAC+TGG - chr3_3:70044818-70044837 Msa0468410:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_3:70045300-70045319 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr3_3:70045195-70045214 Msa0468410:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_3:70045300-70045319 Msa0468410:intron 40.0%
CGGTAATTGTCAGAAAACAC+GGG - chr3_3:70045364-70045383 Msa0468410:intron 40.0%
TAATTGTCAGAAAACACGGG+AGG - chr3_3:70045367-70045386 Msa0468410:intron 40.0%
AATTGTCAGAAAACACGGGA+GGG - chr3_3:70045368-70045387 Msa0468410:intron 40.0%
ACCAATCACAGTTATTCGCT+TGG - chr3_3:70045403-70045422 Msa0468410:intron 40.0%
ACCAAGCGAATAACTGTGAT+TGG + chr3_3:70045407-70045426 None:intergenic 40.0%
CAGTTATTCGCTTGGTATTC+GGG - chr3_3:70045411-70045430 Msa0468410:intron 40.0%
CAAGACGAAAACGTTATAGC+CGG - chr3_3:70045484-70045503 Msa0468410:intron 40.0%
GAAATAGGTTAGGTCTGGTT+TGG - chr3_3:70045600-70045619 Msa0468410:intron 40.0%
AACTATCGCAATACTCCATG+TGG - chr3_3:70045938-70045957 Msa0468410:intron 40.0%
GAGTTTGAATTGGACTCCAT+CGG + chr3_3:70046388-70046407 None:intergenic 40.0%
ACTCCAGTAATCCAGTTTCA+AGG - chr3_3:70046404-70046423 Msa0468410:CDS 40.0%
CAGTTTCAAGGTTAGTACCT+CGG - chr3_3:70046416-70046435 Msa0468410:CDS 40.0%
ATGCATAGTATAGCAAACCG+AGG + chr3_3:70046436-70046455 None:intergenic 40.0%
! GCTTTTGCTCCTTTTCCAAA+GGG + chr3_3:70046542-70046561 None:intergenic 40.0%
AAGTAGCAAGGCTAAACATG+AGG + chr3_3:70046785-70046804 None:intergenic 40.0%
!! CTATTGTCACTTTGGCCTTA+TGG - chr3_3:70046821-70046840 Msa0468410:intron 40.0%
AGAAACAATGGCATCGCTAA+TGG - chr3_3:70046895-70046914 Msa0468410:intron 40.0%
TGATGACAATAGTAGCACCT+TGG - chr3_3:70046927-70046946 Msa0468410:intron 40.0%
CAATAGTAGCACCTTGGAAT+TGG - chr3_3:70046933-70046952 Msa0468410:intron 40.0%
!! AAGAGCGATAATGGGAAAGT+TGG - chr3_3:70047023-70047042 Msa0468410:five_prime_UTR 40.0%
!! AGAGCGATAATGGGAAAGTT+GGG - chr3_3:70047024-70047043 Msa0468410:five_prime_UTR 40.0%
ATAGGAGACGATGTTGACAA+CGG - chr3_3:70047048-70047067 Msa0468410:five_prime_UTR 40.0%
CTCTTCAGTTTCAGAATGTG+TGG + chr3_3:70047112-70047131 None:intergenic 40.0%
!! CACACATTCTGAAACTGAAG+AGG - chr3_3:70047110-70047129 Msa0468410:five_prime_UTR 40.0%
TGAAGCCGGATTATCTGAGT+TGG + chr3_3:70044000-70044019 None:intergenic 45.0%
ACTCAGATAATCCGGCTTCA+AGG - chr3_3:70044000-70044019 Msa0468410:CDS 45.0%
!! GAGATCGATAACGGGAAAGT+TGG - chr3_3:70044434-70044453 Msa0468410:intron 45.0%
!! GATGACGTTGATGGCATTGA+TGG - chr3_3:70044465-70044484 Msa0468410:intron 45.0%
!! GTGTATGACATTGATGGCGA+TGG - chr3_3:70044579-70044598 Msa0468410:intron 45.0%
!! CGTGTTGATAGTGATGGTGA+TGG - chr3_3:70044687-70044706 Msa0468410:intron 45.0%
GATCCAGTGGCAATTGTCTA+TGG + chr3_3:70044824-70044843 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_3:70045299-70045318 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_3:70045299-70045318 Msa0468410:intron 45.0%
CCATGTGGTAGTTGTAACGA+CGG - chr3_3:70045953-70045972 Msa0468410:intron 45.0%
TATATTTATGCAGTCGGGCC+AGG + chr3_3:70046363-70046382 None:intergenic 45.0%
! CGAGGTACTAACCTTGAAAC+TGG + chr3_3:70046418-70046437 None:intergenic 45.0%
! CGCTTTTGCTCCTTTTCCAA+AGG + chr3_3:70046543-70046562 None:intergenic 45.0%
!!! GTTTACCATTTTGGCTGCCT+TGG - chr3_3:70046606-70046625 Msa0468410:CDS 45.0%
GTTTACCAAGGCAGCCAAAA+TGG + chr3_3:70046614-70046633 None:intergenic 45.0%
AATAACCGCGGCGATGAAAT+AGG + chr3_3:70046662-70046681 None:intergenic 45.0%
TAGCACCTTGGAATTGGAGA+TGG - chr3_3:70046939-70046958 Msa0468410:intron 45.0%
GACCAAAGAAGGTGATTGCA+AGG - chr3_3:70046984-70047003 Msa0468410:exon 45.0%
GACCTTGCAATCACCTTCTT+TGG + chr3_3:70046989-70047008 None:intergenic 45.0%
!! GACGTTGATGGCATTGATGG+AGG - chr3_3:70044468-70044487 Msa0468410:intron 50.0%
CGATGGTTTCATCACCGCAA+AGG - chr3_3:70044596-70044615 Msa0468410:intron 50.0%
CCGTCGTTACAACTACCACA+TGG + chr3_3:70045956-70045975 None:intergenic 50.0%
! GTCGCTAGACCATTTTGCGA+TGG + chr3_3:70045988-70046007 None:intergenic 50.0%
ACACCGATATCCTCGATCGT+TGG - chr3_3:70046006-70046025 Msa0468410:intron 50.0%
CACCGATATCCTCGATCGTT+GGG - chr3_3:70046007-70046026 Msa0468410:intron 50.0%
ACCGATATCCTCGATCGTTG+GGG - chr3_3:70046008-70046027 Msa0468410:intron 50.0%
TCCCCAACGATCGAGGATAT+CGG + chr3_3:70046012-70046031 None:intergenic 50.0%
!! TCGCAATGTGCCATTTGCGA+CGG + chr3_3:70046035-70046054 None:intergenic 50.0%
TACGACCTATTTCATCGCCG+CGG - chr3_3:70046654-70046673 Msa0468410:intron 50.0%
! CGAGGTTCTGACCTTGAAGC+CGG + chr3_3:70044014-70044033 None:intergenic 55.0%
TGTCAGAAAACACGGGAGGG+TGG - chr3_3:70045371-70045390 Msa0468410:intron 55.0%
GCAGTCGGGCCAGGTATAAA+TGG + chr3_3:70046354-70046373 None:intergenic 55.0%
GGAGACGATGTTGACAACGG+AGG - chr3_3:70047051-70047070 Msa0468410:five_prime_UTR 55.0%
TCGTTGGGGACCGTCGCAAA+TGG - chr3_3:70046022-70046041 Msa0468410:intron 60.0%
GGCATCGCTAATGGCGACGT+TGG - chr3_3:70046904-70046923 Msa0468410:intron 60.0%
GCGACGGTCCCCAACGATCG+AGG + chr3_3:70046019-70046038 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 70043818 70047161 70043818 ID=Msa0468410;Name=Msa0468410
chr3_3 mRNA 70043818 70047161 70043818 ID=Msa0468410-mRNA-1;Parent=Msa0468410;Name=Msa0468410-mRNA-1;_AED=0.12;_eAED=0.12;_QI=166|0.16|0.14|1|0.16|0|7|0|369
chr3_3 exon 70043818 70044021 70043818 ID=Msa0468410-mRNA-1:exon:16808;Parent=Msa0468410-mRNA-1
chr3_3 exon 70044130 70044221 70044130 ID=Msa0468410-mRNA-1:exon:16807;Parent=Msa0468410-mRNA-1
chr3_3 exon 70044240 70044427 70044240 ID=Msa0468410-mRNA-1:exon:16806;Parent=Msa0468410-mRNA-1
chr3_3 exon 70044554 70044560 70044554 ID=Msa0468410-mRNA-1:exon:16805;Parent=Msa0468410-mRNA-1
chr3_3 exon 70046232 70046658 70046232 ID=Msa0468410-mRNA-1:exon:16804;Parent=Msa0468410-mRNA-1
chr3_3 exon 70046683 70046836 70046683 ID=Msa0468410-mRNA-1:exon:16803;Parent=Msa0468410-mRNA-1
chr3_3 exon 70046958 70047161 70046958 ID=Msa0468410-mRNA-1:exon:16802;Parent=Msa0468410-mRNA-1
chr3_3 five_prime_UTR 70046996 70047161 70046996 ID=Msa0468410-mRNA-1:five_prime_utr;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70046958 70046995 70046958 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70046683 70046836 70046683 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70046232 70046658 70046232 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70044554 70044560 70044554 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70044240 70044427 70044240 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70044130 70044221 70044130 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
chr3_3 CDS 70043818 70044021 70043818 ID=Msa0468410-mRNA-1:cds;Parent=Msa0468410-mRNA-1
Gene Sequence

>Msa0468410

ATGGTTTCCAATTCCAACTCAGATAATCCGGCTTCAAGGATCAAAAGCAATGAAGGAAAGTTGAAGGACATGGCCAAAATCTTATACAAAATGATTGCCGTTTTAGCTGTTTTGTTAGCATTGAATTACACAGAAGCTGGAAACATGTTTTCCAAACAACAATACACAATCTATTTCATCTCCTCCATTATCCTACGGAGAAACAAAATTGGCAATGTCAATGTCAACACATTGGAATTGGAGATGGAAAAACTCTTCAAGAAATTGGACACAGATGGTGATGGAAAGATATCGATCTCAGATCTGAGATCGATAACGGGAAAGTTGGATATAGGAGATGACGTTGATGGCATTGATGGAGGATCTATCACGCTTCAAGAATTTATTGAGCTAAGCACAACAAACTATGAATCTGAAGAGGAAATGGAAAACTTAAAGGGCACGTTTTCTGTGTATGACATTGATGGCGATGGTTTCATCACCGCAAAGGAGCTTAATACGCTTATGAGAAGCATTGGTCAAGAGTGTTCCTTAGATGAATGTGAAAGAATTATTGGTCGTGTTGATAGTGATGGTGATGGTAGGATTGATTTTGAGGATTTTAGAATCATGATGATGGTTTCAAGGAGCAAAAGCGATGAACTAGTGTTTAAAGACTTGGCCAACATCTTATATAAACTGTTTACCATTTTGGCTGCCTTGGTAAACAAGCTTTCCAAACAACACTATACGACCTATTTCATCGCCGCGGTTATTGTATATTTCTTACTATGGATTCTTCAAACTATTTTAAAACAACCCATTAGGGTTGAACTCTTACTCTTACTAGGATCTGTTGCCTCATGTTTAGCCTTGCTACTTATTTCAAGCAACATTGCTATTGTCACTTTGGCCTTATGGCTCACTATGGAAAAAATCTTCAAGAAATTGGAGACCAAAGAAGGTGATTGCAAGGTCTTGATATCTGATCTAAGAGCGATAATGGGAAAGTTGGGTATAGGAGACGATGTTGACAACGGAGGATCTATCACACTCCAAGAATTTATTGAGCTAAGCACCACACATTCTGAAACTGAAGAGGACATAGAAAACATCAAAGATGTGTTTTGA
Protein sequence

>Msa0468410

MVSNSNSDNPASRIKSNEGKLKDMAKILYKMIAVLAVLLALNYTEAGNMFSKQQYTIYFISSIILRRNKIGNVNVNTLELEMEKLFKKLDTDGDGKISISDLRSITGKLDIGDDVDGIDGGSITLQEFIELSTTNYESEEEMENLKGTFSVYDIDGDGFITAKELNTLMRSIGQECSLDECERIIGRVDSDGDGRIDFEDFRIMMMVSRSKSDELVFKDLANILYKLFTILAALVNKLSKQHYTTYFIAAVIVYFLLWILQTILKQPIRVELLLLLGSVASCLALLLISSNIAIVTLALWLTMEKIFKKLETKEGDCKVLISDLRAIMGKLGIGDDVDNGGSITLQEFIELSTTHSETEEDIENIKDVF*