AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467100 MtrunA17_Chr3g0121191 83.721 215 20 3 3 202 5 219 1.48e-103 304
Msa0467100 MtrunA17_Chr3g0121191 45.833 168 62 5 202 359 13 161 1.36e-24 100
Msa0467100 MtrunA17_Chr8g0391691 53.030 132 47 2 81 197 36 167 7.05e-35 126
Msa0467100 MtrunA17_Chr1g0161211 46.377 138 59 2 81 203 46 183 3.34e-29 111
Msa0467100 MtrunA17_Chr3g0111371 36.765 136 73 3 81 205 5 138 1.72e-20 86.7
Msa0467100 MtrunA17_Chr5g0434951 35.294 136 70 3 81 200 4 137 1.39e-19 84.0
Msa0467100 MtrunA17_Chr4g0057651 39.130 138 66 4 79 200 4 139 2.40e-19 83.6
Msa0467100 MtrunA17_Chr1g0169581 32.117 137 76 2 81 200 4 140 4.09e-19 82.8
Msa0467100 MtrunA17_Chr5g0402331 32.692 156 90 1 61 201 28 183 4.48e-19 84.0
Msa0467100 MtrunA17_Chr4g0057641 37.226 137 68 4 80 200 5 139 8.12e-19 82.0
Msa0467100 MtrunA17_Chr5g0402361 32.716 162 94 3 61 207 28 189 1.51e-18 85.9
Msa0467100 MtrunA17_Chr5g0402361 32.692 156 90 1 61 201 200 355 1.36e-17 83.2
Msa0467100 MtrunA17_Chr8g0392951 33.099 142 81 2 81 208 24 165 1.69e-18 82.0
Msa0467100 MtrunA17_Chr7g0225921 33.333 138 73 2 81 201 6 141 7.84e-18 79.3
Msa0467100 MtrunA17_Chr4g0057661 38.686 137 66 5 80 200 5 139 1.35e-17 78.6
Msa0467100 MtrunA17_Chr1g0169621 30.909 165 72 4 78 200 1 165 6.70e-16 74.7
Msa0467100 MtrunA17_Chr6g0482731 31.655 139 72 3 81 200 26 160 1.84e-15 73.6
Msa0467100 MtrunA17_Chr7g0256701 31.293 147 81 3 78 204 70 216 7.06e-15 72.8
Msa0467100 MtrunA17_Chr8g0351681 33.793 145 73 3 81 202 49 193 7.84e-15 72.4
Msa0467100 MtrunA17_Chr7g0245911 32.639 144 73 3 81 200 47 190 7.94e-15 72.4
Msa0467100 MtrunA17_Chr6g0459231 33.333 132 74 2 84 201 11 142 9.16e-15 70.9
Msa0467100 MtrunA17_Chr1g0188171 28.249 177 97 5 31 204 1 150 1.67e-14 70.5
Msa0467100 MtrunA17_Chr4g0033601 32.168 143 68 6 81 200 5 141 3.21e-13 66.6
Msa0467100 MtrunA17_Chr3g0093271 32.857 140 73 3 81 202 63 199 3.70e-13 67.8
Msa0467100 MtrunA17_Chr3g0093271 45.588 68 37 0 133 200 57 124 1.59e-12 65.9
Msa0467100 MtrunA17_Chr1g0166281 31.387 137 79 2 80 201 11 147 4.88e-13 66.2
Msa0467100 MtrunA17_Chr5g0440931 43.421 76 43 0 133 208 6 81 6.16e-13 65.9
Msa0467100 MtrunA17_Chr5g0440931 32.857 140 73 3 81 202 12 148 1.62e-12 64.7
Msa0467100 MtrunA17_Chr4g0062221 31.973 147 81 4 81 210 11 155 8.32e-13 65.9
Msa0467100 MtrunA17_Chr3g0116151 31.818 132 76 4 83 200 8 139 1.54e-12 64.3
Msa0467100 MtrunA17_Chr7g0254731 45.588 68 37 0 133 200 6 73 1.84e-12 64.3
Msa0467100 MtrunA17_Chr7g0254731 32.143 140 74 3 81 202 12 148 3.54e-12 63.5
Msa0467100 MtrunA17_Chr3g0116141 31.818 132 76 4 83 200 7 138 1.93e-12 64.3
Msa0467100 MtrunA17_Chr6g0460211 32.857 140 73 3 81 202 12 148 2.07e-12 64.3
Msa0467100 MtrunA17_Chr6g0460211 42.105 76 44 0 133 208 6 81 2.22e-12 64.3
Msa0467100 MtrunA17_Chr3g0121181 65.854 41 14 0 161 201 5 45 2.98e-12 60.8
Msa0467100 MtrunA17_Chr3g0125311 27.333 150 82 3 81 203 13 162 3.43e-12 63.9
Msa0467100 MtrunA17_Chr4g0044961 30.147 136 82 2 81 203 57 192 4.12e-12 64.7
Msa0467100 MtrunA17_Chr1g0160151 31.293 147 72 3 81 203 22 163 7.99e-12 63.2
Msa0467100 MtrunA17_Chr8g0336891 42.157 102 38 3 211 291 105 206 1.42e-11 63.5
Msa0467100 MtrunA17_Chr7g0245231 33.663 101 61 1 126 226 17 111 2.23e-11 62.0
Msa0467100 MtrunA17_Chr5g0396261 40.323 62 37 0 138 199 51 112 2.39e-11 60.5
Msa0467100 MtrunA17_Chr6g0450921 33.663 101 61 1 126 226 16 110 2.52e-11 61.6
Msa0467100 MtrunA17_Chr8g0373691 37.500 88 55 0 122 209 36 123 3.68e-11 61.6
Msa0467100 MtrunA17_Chr1g0185001 29.688 128 68 3 76 203 43 148 4.10e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467100 AT1G24620.1 39.444 180 81 6 49 204 1 176 6.14e-27 105
Msa0467100 AT1G66400.1 35.211 142 75 2 81 205 15 156 3.95e-23 94.7
Msa0467100 AT1G18210.2 34.351 131 75 2 81 200 23 153 8.87e-19 83.2
Msa0467100 AT1G18210.1 34.351 131 75 2 81 200 23 153 8.87e-19 83.2
Msa0467100 AT5G37770.1 32.624 141 72 3 81 200 17 155 1.70e-18 82.0
Msa0467100 AT5G37770.2 32.624 141 72 3 81 200 17 155 1.70e-18 82.0
Msa0467100 AT1G73630.1 32.237 152 87 3 77 217 16 162 2.80e-18 81.6
Msa0467100 AT2G41410.1 36.879 141 71 3 81 203 70 210 7.25e-18 81.6
Msa0467100 AT2G43290.1 35.211 142 70 4 81 200 65 206 1.67e-17 80.9
Msa0467100 AT3G10190.1 35.664 143 72 4 80 204 69 209 6.75e-15 73.2
Msa0467100 AT3G59440.1 32.847 137 76 3 80 200 50 186 7.93e-15 72.8
Msa0467100 AT5G17470.1 30.952 126 68 2 81 206 38 144 1.41e-14 70.9
Msa0467100 AT4G03290.1 35.417 144 73 3 81 204 5 148 2.42e-14 70.5
Msa0467100 AT2G15680.1 33.333 138 74 5 81 203 50 184 4.99e-14 70.5
Msa0467100 AT1G66410.4 33.071 127 64 3 76 202 7 112 7.12e-14 67.8
Msa0467100 AT1G66410.3 33.071 127 64 3 76 202 7 112 7.12e-14 67.8
Msa0467100 AT2G36180.1 33.333 120 62 3 81 200 36 137 1.23e-13 68.2
Msa0467100 AT5G37780.4 33.071 127 64 3 76 202 30 135 1.88e-13 67.4
Msa0467100 AT1G66410.2 33.071 127 64 3 76 202 53 158 3.70e-13 67.0
Msa0467100 AT5G37780.2 33.071 127 64 3 76 202 58 163 3.84e-13 67.4
Msa0467100 AT1G66410.1 33.071 127 64 3 76 202 43 148 4.68e-13 66.6
Msa0467100 AT1G66410.1 43.421 76 43 0 133 208 6 81 7.49e-13 65.9
Msa0467100 AT5G37780.1 33.071 127 64 3 76 202 43 148 4.68e-13 66.6
Msa0467100 AT5G37780.1 43.421 76 43 0 133 208 6 81 7.49e-13 65.9
Msa0467100 AT2G27030.3 33.099 142 74 3 81 204 12 150 5.65e-13 67.0
Msa0467100 AT2G27030.3 45.588 68 37 0 133 200 6 73 6.75e-12 63.9
Msa0467100 AT5G37780.3 33.071 127 64 3 76 202 69 174 5.94e-13 67.0
Msa0467100 AT3G43810.4 31.496 127 66 3 76 202 7 112 6.12e-13 65.1
Msa0467100 AT3G43810.3 31.496 127 66 3 76 202 7 112 6.12e-13 65.1
Msa0467100 AT3G43810.2 32.394 142 75 3 81 204 12 150 9.47e-13 67.4
Msa0467100 AT3G43810.2 45.588 68 37 0 133 200 6 73 6.38e-12 64.7
Msa0467100 AT1G05990.1 47.619 63 31 1 140 200 80 142 1.08e-12 65.5
Msa0467100 AT5G21274.1 33.571 140 72 3 81 202 12 148 1.09e-12 65.5
Msa0467100 AT5G21274.1 45.588 68 37 0 133 200 6 73 3.18e-12 64.3
Msa0467100 AT4G14640.1 32.117 137 76 3 81 201 13 148 1.25e-12 65.5
Msa0467100 AT2G41110.2 31.496 127 66 3 76 202 55 160 1.77e-12 65.1
Msa0467100 AT3G56800.1 32.857 140 73 3 81 202 12 148 2.22e-12 64.7
Msa0467100 AT3G56800.1 42.105 76 44 0 133 208 6 81 2.62e-12 64.3
Msa0467100 AT2G41110.1 32.857 140 73 3 81 202 12 148 2.22e-12 64.7
Msa0467100 AT2G41110.1 42.105 76 44 0 133 208 6 81 2.62e-12 64.3
Msa0467100 AT2G27030.1 32.857 140 73 3 81 202 12 148 2.22e-12 64.7
Msa0467100 AT2G27030.1 42.105 76 44 0 133 208 6 81 2.62e-12 64.3
Msa0467100 AT3G43810.1 32.857 140 73 3 81 202 12 148 2.86e-12 64.3
Msa0467100 AT3G43810.1 42.105 76 44 0 133 208 6 81 3.06e-12 64.3
Msa0467100 AT4G14640.2 28.788 132 73 3 70 201 20 130 9.31e-12 62.4
Msa0467100 AT3G22930.1 29.104 134 74 3 70 203 60 172 1.01e-11 63.5
Msa0467100 AT3G50770.1 30.625 160 88 4 66 202 46 205 1.79e-11 63.5
Msa0467100 AT4G12860.1 33.094 139 72 4 81 200 5 141 2.80e-11 61.6
Msa0467100 AT2G41100.2 30.159 126 82 3 76 200 7 127 6.26e-11 61.6

Find 123 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATAAACTGTTTACCATTT+TGG 0.147897 3_3:-68312977 Msa0467100:CDS
CTATTGTCACTTTGGCCTTA+TGG 0.176207 3_3:-68312753 Msa0467100:CDS
TCATATGATATGGCAATAAT+TGG 0.218393 3_3:-68315414 Msa0467100:five_prime_UTR
CACACATCTATGCCTTAAAA+TGG 0.227910 3_3:-68315642 Msa0467100:five_prime_UTR
GACCTTGCAATCACCTTCTT+TGG 0.242281 3_3:+68312588 None:intergenic
ATGCCTTAAAATGGGGTAAA+TGG 0.252221 3_3:-68315633 Msa0467100:five_prime_UTR
GATGAATGTGAAAGAATTAT+TGG 0.254128 3_3:-68314628 Msa0467100:CDS
TTATTGTATATTTCTTACTA+TGG 0.258217 3_3:-68312897 Msa0467100:CDS
AATTCTTTCACATTCATCTA+AGG 0.287517 3_3:+68314633 None:intergenic
ATCTGATCTAAGAGCGATAA+TGG 0.288423 3_3:-68312560 Msa0467100:CDS
CGCTATACTTAATTTATTAT+CGG 0.293867 3_3:-68315445 Msa0467100:five_prime_UTR
ACGAATTTCTAAAACGAATA+AGG 0.294760 3_3:-68315982 Msa0467100:five_prime_UTR
AGAGGAAATGGAAAACTTAA+AGG 0.303204 3_3:-68314746 Msa0467100:CDS
AATGAAACGTTCAACCCTAA+TGG 0.318380 3_3:+68312849 None:intergenic
TGCTTAGCTCAATAAATTCT+TGG 0.338403 3_3:+68312488 None:intergenic
GTTTACCAAGGCAGCCAAAA+TGG 0.338846 3_3:+68312963 None:intergenic
AATAACCGCGGCGATGAAAT+AGG 0.342707 3_3:+68312915 None:intergenic
CAATGTCAACACATTGGAAT+TGG 0.350732 3_3:-68314944 Msa0467100:CDS
TGTGCCTCTCCATCTCTTGT+AGG 0.355825 3_3:+68315904 None:intergenic
AAAGATGACAACAACGATAA+TGG 0.356762 3_3:+68315002 None:intergenic
CAGCTACGGAGAAACAAAAT+TGG 0.368263 3_3:-68314973 Msa0467100:CDS
CTATGAATCTGAAGAGGAAA+TGG 0.373890 3_3:-68314758 Msa0467100:CDS
ACTATTATATTCTTAAAGTT+AGG 0.380920 3_3:-68315379 Msa0467100:five_prime_UTR
CGGATTATCTGAGTTGGAAT+TGG 0.386893 3_3:+68315307 None:intergenic
GGGGTTTCGTTCATATGATA+TGG 0.387148 3_3:-68315424 Msa0467100:five_prime_UTR
ATAGATTGTGTATTGTTGTT+TGG 0.388629 3_3:+68315035 None:intergenic
GCTATACTTAATTTATTATC+GGG 0.388673 3_3:-68315444 Msa0467100:five_prime_UTR
AGGATCTGAAAAGAAATTAC+AGG 0.394754 3_3:+68315486 None:intergenic
ATAGGTCGTATAGTGTTGTT+TGG 0.404071 3_3:+68312933 None:intergenic
ACACATCTATGCCTTAAAAT+GGG 0.407398 3_3:-68315641 Msa0467100:five_prime_UTR
CAATTCCAACTCAGATAATC+CGG 0.409288 3_3:-68315306 Msa0467100:CDS
AAGAGATGGAGAGGCACAAC+TGG 0.409692 3_3:-68315899 Msa0467100:five_prime_UTR
TGGAGAAGGAGAGGGGAAGA+TGG 0.416912 3_3:-68315869 Msa0467100:five_prime_UTR
TGTGCTGGGACAGGAGGAAA+GGG 0.420452 3_3:-68315838 Msa0467100:five_prime_UTR
AAGAGCGATAATGGGAAAGT+TGG 0.422840 3_3:-68312551 Msa0467100:CDS
CGCGTAGAGTATTGTTTAGT+AGG 0.425049 3_3:+68315466 None:intergenic
CAACATTGCTATTGTCACTT+TGG 0.428619 3_3:-68312761 Msa0467100:CDS
ATGAAACGTTCAACCCTAAT+GGG 0.429600 3_3:+68312850 None:intergenic
TGCCGGTGCCGGTGAGGAGA+AGG 0.430263 3_3:-68315807 Msa0467100:five_prime_UTR
CTCCTCACCGGCACCGGCAC+CGG 0.444730 3_3:+68315811 None:intergenic
GTGTGTTACGTGTGTATAAA+CGG 0.444731 3_3:-68315578 Msa0467100:five_prime_UTR
TCCATCTCTTGTAGGTATGA+TGG 0.446655 3_3:+68315912 None:intergenic
ATAACGGGAAAGTTGGATAT+AGG 0.451167 3_3:-68314850 Msa0467100:CDS
GGCGGAAGCGGCCATGATGA+TGG 0.451462 3_3:-68315785 Msa0467100:five_prime_UTR
GATGACGTTGATGGCATTGA+TGG 0.458924 3_3:-68314826 Msa0467100:CDS
AAGATGGAAAAGAGTTGTGC+TGG 0.462265 3_3:-68315853 Msa0467100:five_prime_UTR
TGCTAACAAAACAGCTAAAA+CGG 0.465298 3_3:+68315089 None:intergenic
ACTCAGATAATCCGGCTTCA+AGG 0.465470 3_3:-68315298 Msa0467100:intron
GAGGAAATGGAAAACTTAAA+GGG 0.465725 3_3:-68314745 Msa0467100:CDS
ATAATGGGAAAGTTGGGTAT+AGG 0.468705 3_3:-68312544 Msa0467100:CDS
ACTCCAGTAATCCAGTTTCA+AGG 0.469240 3_3:-68313161 Msa0467100:intron
AAAAGGATCAAAAGCAATGA+AGG 0.473441 3_3:-68315153 Msa0467100:intron
AAGCGTATTAAGCTCCTTTG+CGG 0.477365 3_3:+68314681 None:intergenic
GCATTGAATTACACAGAAGC+TGG 0.479418 3_3:-68315069 Msa0467100:CDS
CGCCGGTGCCGGTGCCGGTG+AGG 0.481246 3_3:-68315813 Msa0467100:five_prime_UTR
GCCCTTCTCCTCACCGGCAC+CGG 0.486043 3_3:+68315805 None:intergenic
GAGATCGATAACGGGAAAGT+TGG 0.487971 3_3:-68314857 Msa0467100:CDS
GGTGAGGAGAAGGGCGGAAG+CGG 0.489629 3_3:-68315797 Msa0467100:five_prime_UTR
CTCAGATCTGAGATCGATAA+CGG 0.493665 3_3:-68314866 Msa0467100:CDS
TCTGATCTAAGAGCGATAAT+GGG 0.494788 3_3:-68312559 Msa0467100:CDS
AGGGTATGTCACAGAGAGAA+AGG 0.496599 3_3:-68315749 Msa0467100:five_prime_UTR
TCAGATCTGAGATCGATAAC+GGG 0.497355 3_3:-68314865 Msa0467100:CDS
CGAGGTTCTGACCTTGAAGC+CGG 0.497573 3_3:+68315287 None:intergenic
GATATAGGAGATGACGTTGA+TGG 0.498114 3_3:-68314835 Msa0467100:CDS
GAAAAGAGTTGTGCTGGGAC+AGG 0.502407 3_3:-68315847 Msa0467100:five_prime_UTR
AGAGCGATAATGGGAAAGTT+GGG 0.504415 3_3:-68312550 Msa0467100:CDS
GTAAATGGAGCACATCGAAA+TGG 0.505877 3_3:-68315618 Msa0467100:five_prime_UTR
TGATGGAGAGGAAGATGGAA+GGG 0.507602 3_3:-68315768 Msa0467100:five_prime_UTR
AAGCAATGAAGGAAAGTTGA+AGG 0.508377 3_3:-68315142 Msa0467100:CDS
TATAAATACAGTGAGCCATA+AGG 0.509742 3_3:+68312738 None:intergenic
TGAACTAGTGTTTAAAGACT+TGG 0.513250 3_3:-68313010 Msa0467100:CDS
TTGTGCTGGGACAGGAGGAA+AGG 0.515636 3_3:-68315839 Msa0467100:five_prime_UTR
GCCGGTGCCGGTGAGGAGAA+GGG 0.520837 3_3:-68315806 Msa0467100:five_prime_UTR
AATACGCTTATGAGAAGCAT+TGG 0.523714 3_3:-68314667 Msa0467100:CDS
TGAAGCCGGATTATCTGAGT+TGG 0.528924 3_3:+68315301 None:intergenic
CAACACATTGGAATTGGAGA+TGG 0.533055 3_3:-68314938 Msa0467100:CDS
CATGATGATGGAGAGGAAGA+TGG 0.535029 3_3:-68315773 Msa0467100:five_prime_UTR
AAGAAATTGGAGACCAAAGA+AGG 0.535558 3_3:-68312601 Msa0467100:CDS
AAACAGTTTATATAAGATGT+TGG 0.539608 3_3:+68312987 None:intergenic
CATCTTCCTCTCCATCATCA+TGG 0.546407 3_3:+68315774 None:intergenic
ATGATGGAGAGGAAGATGGA+AGG 0.559245 3_3:-68315769 Msa0467100:five_prime_UTR
GAAGAAGAAAGTCATTCTGA+TGG 0.561016 3_3:-68315333 Msa0467100:exon
CTCTTCAGTTTCAGAATGTG+TGG 0.566849 3_3:+68312465 None:intergenic
AGGCATAGATGTGTGACACT+TGG 0.568527 3_3:+68315650 None:intergenic
TTGATAGTGATGGTGATGGT+AGG 0.571325 3_3:-68314600 Msa0467100:CDS
ATCTCTTGTAGGTATGATGG+TGG 0.571897 3_3:+68315915 None:intergenic
ACCATCATACCTACAAGAGA+TGG 0.576746 3_3:-68315913 Msa0467100:five_prime_UTR
CTATACTTAATTTATTATCG+GGG 0.576985 3_3:-68315443 Msa0467100:five_prime_UTR
TGCTGGGACAGGAGGAAAGG+GGG 0.577136 3_3:-68315836 Msa0467100:five_prime_UTR
GACCAAAGAAGGTGATTGCA+AGG 0.582968 3_3:-68312590 Msa0467100:CDS
GTTGCTTGAAATAAGTAGCA+AGG 0.584934 3_3:+68312780 None:intergenic
AACAAACTATGAATCTGAAG+AGG 0.586456 3_3:-68314764 Msa0467100:CDS
GTGTATGACATTGATGGCGA+TGG 0.590310 3_3:-68314712 Msa0467100:CDS
AAGAGTTGTGCTGGGACAGG+AGG 0.590658 3_3:-68315844 Msa0467100:five_prime_UTR
CACACATTCTGAAACTGAAG+AGG 0.599111 3_3:-68312464 Msa0467100:CDS
CAATGTCAATGTCAACACAT+TGG 0.601927 3_3:-68314950 Msa0467100:CDS
GATTACGATGGAGAAGGAGA+GGG 0.604311 3_3:-68315877 Msa0467100:five_prime_UTR
CACATCTATGCCTTAAAATG+GGG 0.607191 3_3:-68315640 Msa0467100:five_prime_UTR
GCTTCCGCCCTTCTCCTCAC+CGG 0.610008 3_3:+68315799 None:intergenic
TTCAAGAAATTGGACACAGA+TGG 0.611437 3_3:-68314907 Msa0467100:CDS
TGAAGGAAAGTTGAAGGACA+TGG 0.612935 3_3:-68315136 Msa0467100:CDS
ATTGGTCGTGTTGATAGTGA+TGG 0.614485 3_3:-68314610 Msa0467100:CDS
AGATGGAAAAGAGTTGTGCT+GGG 0.622598 3_3:-68315852 Msa0467100:five_prime_UTR
GGATTACGATGGAGAAGGAG+AGG 0.626081 3_3:-68315878 Msa0467100:five_prime_UTR
AATTTCTAAAACGAATAAGG+TGG 0.626391 3_3:-68315979 Msa0467100:five_prime_UTR
CGATGGTTTCATCACCGCAA+AGG 0.626557 3_3:-68314695 Msa0467100:CDS
AAGTAGCAAGGCTAAACATG+AGG 0.635088 3_3:+68312792 None:intergenic
AAGCGGCCATGATGATGGAG+AGG 0.635852 3_3:-68315780 Msa0467100:five_prime_UTR
CGTGTTGATAGTGATGGTGA+TGG 0.638546 3_3:-68314604 Msa0467100:CDS
GTGCTGGGACAGGAGGAAAG+GGG 0.645191 3_3:-68315837 Msa0467100:five_prime_UTR
TTTGGAAAGCTTGTTTACCA+AGG 0.645930 3_3:+68312951 None:intergenic
AAATTGGACACAGATGGTGA+TGG 0.649231 3_3:-68314901 Msa0467100:CDS
ATTACGATGGAGAAGGAGAG+GGG 0.658748 3_3:-68315876 Msa0467100:five_prime_UTR
GACGTTGATGGCATTGATGG+AGG 0.660924 3_3:-68314823 Msa0467100:CDS
GATGACAACAACGATAATGG+AGG 0.662741 3_3:+68315005 None:intergenic
CATACCTACAAGAGATGGAG+AGG 0.663238 3_3:-68315908 Msa0467100:five_prime_UTR
CAACTGGATTACGATGGAGA+AGG 0.673416 3_3:-68315883 Msa0467100:five_prime_UTR
GAGGCACAACTGGATTACGA+TGG 0.678852 3_3:-68315889 Msa0467100:five_prime_UTR
ATAGGAGACGATGTTGACAA+CGG 0.711944 3_3:-68312526 Msa0467100:CDS
GGAGACGATGTTGACAACGG+AGG 0.719496 3_3:-68312523 Msa0467100:CDS
TAAGAAATATACAATAACCG+CGG 0.725581 3_3:+68312903 None:intergenic
TACGACCTATTTCATCGCCG+CGG 0.727735 3_3:-68312920 Msa0467100:CDS
GGTGCCGGTGAGGAGAAGGG+CGG 0.730053 3_3:-68315803 Msa0467100:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTACAAAAAAC+CGG + chr3_3:68314403-68314422 None:intergenic 10.0%
!! TATATTGAATTTATTATACA+GGG - chr3_3:68315212-68315231 Msa0467100:intron 10.0%
!! ACTATTATATTCTTAAAGTT+AGG - chr3_3:68313084-68313103 Msa0467100:intron 15.0%
!!! AATCATTTTGTATAAGATTT+TGG + chr3_3:68313353-68313372 None:intergenic 15.0%
!!! AATTGTGTTGTTATTTTTTT+TGG - chr3_3:68314029-68314048 Msa0467100:intron 15.0%
!! CTATATTGAATTTATTATAC+AGG - chr3_3:68315211-68315230 Msa0467100:intron 15.0%
!!! TAACTTGTTTTAATTTTGAA+AGG + chr3_3:68315373-68315392 None:intergenic 15.0%
!! TTATTGTATATTTCTTACTA+TGG - chr3_3:68315566-68315585 Msa0467100:five_prime_UTR 15.0%
!!! ATATATAATTATCGATTTCA+AGG - chr3_3:68315757-68315776 Msa0467100:five_prime_UTR 15.0%
!! CGCTATACTTAATTTATTAT+CGG - chr3_3:68313018-68313037 Msa0467100:CDS 20.0%
!! GCTATACTTAATTTATTATC+GGG - chr3_3:68313019-68313038 Msa0467100:CDS 20.0%
!! CTATACTTAATTTATTATCG+GGG - chr3_3:68313020-68313039 Msa0467100:CDS 20.0%
!! ATCAAAATTAGATACATACT+AGG - chr3_3:68314465-68314484 Msa0467100:intron 20.0%
!! TCAAAATTAGATACATACTA+GGG - chr3_3:68314466-68314485 Msa0467100:intron 20.0%
!! GATAATCGTTAATTTAGTTA+AGG + chr3_3:68314669-68314688 None:intergenic 20.0%
!! GTTTCTATTAGAAAAAACAA+TGG - chr3_3:68314765-68314784 Msa0467100:CDS 20.0%
!! ATGACTTATATTCAAATGTT+TGG - chr3_3:68315022-68315041 Msa0467100:CDS 20.0%
!! TGTTGTTAACAAATTGAAAA+AGG - chr3_3:68315057-68315076 Msa0467100:CDS 20.0%
!!! TGATGTTTTAGATATTGTTT+AGG + chr3_3:68315091-68315110 None:intergenic 20.0%
!!! TTTTTTTTTTGTTTTCCCTT+TGG - chr3_3:68315413-68315432 Msa0467100:five_prime_UTR 20.0%
!! AAACAGTTTATATAAGATGT+TGG + chr3_3:68315479-68315498 None:intergenic 20.0%
!!! ATATAAACTGTTTACCATTT+TGG - chr3_3:68315486-68315505 Msa0467100:five_prime_UTR 20.0%
!!! TATTTTAAAACAACCCATTA+GGG - chr3_3:68315600-68315619 Msa0467100:five_prime_UTR 20.0%
!!! GAAATTCGTTTTTCTCTAAT+CGG + chr3_3:68312470-68312489 None:intergenic 25.0%
!!! ACGAATTTCTAAAACGAATA+AGG - chr3_3:68312481-68312500 Msa0467100:CDS 25.0%
!!! AATTTCTAAAACGAATAAGG+TGG - chr3_3:68312484-68312503 Msa0467100:CDS 25.0%
! CTTGGCAAAAACAAATTTAA+GGG + chr3_3:68312798-68312817 None:intergenic 25.0%
! ACTTGGCAAAAACAAATTTA+AGG + chr3_3:68312799-68312818 None:intergenic 25.0%
!!! TTTTTTTATGTGAGAGAATC+TGG + chr3_3:68312913-68312932 None:intergenic 25.0%
! TCATATGATATGGCAATAAT+TGG - chr3_3:68313049-68313068 Msa0467100:intron 25.0%
! TTTGAACTTGAAAGGTAAAA+TGG + chr3_3:68313232-68313251 None:intergenic 25.0%
!!! TTTTTTGTTTTCCCTCAAAA+AGG - chr3_3:68313293-68313312 Msa0467100:intron 25.0%
!! ATAGATTGTGTATTGTTGTT+TGG + chr3_3:68313431-68313450 None:intergenic 25.0%
! TCATCTTTATTAATCAGCTA+CGG - chr3_3:68313476-68313495 Msa0467100:intron 25.0%
! AATTCTTTCACATTCATCTA+AGG + chr3_3:68313833-68313852 None:intergenic 25.0%
! GATGAATGTGAAAGAATTAT+TGG - chr3_3:68313835-68313854 Msa0467100:intron 25.0%
!!! GATTTTAGAATCATGATGAT+GGG - chr3_3:68313898-68313917 Msa0467100:intron 25.0%
!!! GTGTTGTTATTTTTTTTGGT+TGG - chr3_3:68314033-68314052 Msa0467100:intron 25.0%
! TGTTGATGTTATTCATGATA+TGG - chr3_3:68314072-68314091 Msa0467100:intron 25.0%
! ATGGATCATTAAAAAAAGAG+AGG - chr3_3:68314153-68314172 Msa0467100:intron 25.0%
! GGTGAAGATGTTAAAAAAAA+TGG + chr3_3:68314434-68314453 None:intergenic 25.0%
!!! TAATTTTGATTTGCCAATCA+TGG + chr3_3:68314455-68314474 None:intergenic 25.0%
! TCATGACTAAATAATTGGTT+CGG + chr3_3:68314551-68314570 None:intergenic 25.0%
! CATGTTCATGACTAAATAAT+TGG + chr3_3:68314556-68314575 None:intergenic 25.0%
!!! GACAAGATCAAATTGATTTT+AGG - chr3_3:68314635-68314654 Msa0467100:CDS 25.0%
! AATCGTTAATTTAGTTAAGG+TGG + chr3_3:68314666-68314685 None:intergenic 25.0%
! AACAATGGTATAGTAATAGT+TGG - chr3_3:68314780-68314799 Msa0467100:intron 25.0%
! ACAAAAAGAATTGTTTGCAA+TGG + chr3_3:68314986-68315005 None:intergenic 25.0%
!! CAAGTTACTAACTATAGTTT+TGG - chr3_3:68315386-68315405 Msa0467100:five_prime_UTR 25.0%
! TAAGAAATATACAATAACCG+CGG + chr3_3:68315563-68315582 None:intergenic 25.0%
!!! CTATTTTAAAACAACCCATT+AGG - chr3_3:68315599-68315618 Msa0467100:five_prime_UTR 25.0%
! GGAAAAAATCTTCAAGAAAT+TGG - chr3_3:68315849-68315868 Msa0467100:five_prime_UTR 25.0%
ACACATCTATGCCTTAAAAT+GGG - chr3_3:68312822-68312841 Msa0467100:intron 30.0%
AGGATCTGAAAAGAAATTAC+AGG + chr3_3:68312980-68312999 None:intergenic 30.0%
!! CTAACTTGTTTGAACTTGAA+AGG + chr3_3:68313240-68313259 None:intergenic 30.0%
!! TTGCTTTTGATCCTTTTTGA+GGG + chr3_3:68313307-68313326 None:intergenic 30.0%
!! ATTGCTTTTGATCCTTTTTG+AGG + chr3_3:68313308-68313327 None:intergenic 30.0%
AAAAGGATCAAAAGCAATGA+AGG - chr3_3:68313310-68313329 Msa0467100:intron 30.0%
TGCTAACAAAACAGCTAAAA+CGG + chr3_3:68313377-68313396 None:intergenic 30.0%
AAAGATGACAACAACGATAA+TGG + chr3_3:68313464-68313483 None:intergenic 30.0%
GGAAAAACTCTTCAAGAAAT+TGG - chr3_3:68313546-68313565 Msa0467100:intron 30.0%
AACAAACTATGAATCTGAAG+AGG - chr3_3:68313699-68313718 Msa0467100:intron 30.0%
AGAGGAAATGGAAAACTTAA+AGG - chr3_3:68313717-68313736 Msa0467100:intron 30.0%
GAGGAAATGGAAAACTTAAA+GGG - chr3_3:68313718-68313737 Msa0467100:intron 30.0%
! TTTTCTGTGTATGACATTGA+TGG - chr3_3:68313745-68313764 Msa0467100:intron 30.0%
!!! GGATTTTAGAATCATGATGA+TGG - chr3_3:68313897-68313916 Msa0467100:intron 30.0%
TTTGATGTTGGACTCTATTA+TGG + chr3_3:68313930-68313949 None:intergenic 30.0%
AGAAATGTCAAGTTTGATGT+TGG + chr3_3:68313942-68313961 None:intergenic 30.0%
TTTAACATCTTCACCATGAT+TGG - chr3_3:68314439-68314458 Msa0467100:intron 30.0%
ACTAGGGATGTATTAGAAAT+AGG - chr3_3:68314482-68314501 Msa0467100:intron 30.0%
GGATGTATTAGAAATAGGTT+AGG - chr3_3:68314487-68314506 Msa0467100:intron 30.0%
TATTAGAAATAGGTTAGGTC+TGG - chr3_3:68314492-68314511 Msa0467100:intron 30.0%
! GTTCGGTCTAATTTAAGATT+GGG + chr3_3:68314534-68314553 None:intergenic 30.0%
GACGTAATACATGTTCAATA+AGG - chr3_3:68314597-68314616 Msa0467100:CDS 30.0%
AATAAGGATGAGATGATACA+AGG - chr3_3:68314613-68314632 Msa0467100:CDS 30.0%
! TTGCTAATATTTGCCATTTC+TGG - chr3_3:68314696-68314715 Msa0467100:CDS 30.0%
! TGCTAATATTTGCCATTTCT+GGG - chr3_3:68314697-68314716 Msa0467100:CDS 30.0%
TCATAATTTGAACCCAGAAA+TGG + chr3_3:68314712-68314731 None:intergenic 30.0%
! GTCTTCTTTACTTTATTTCC+TGG - chr3_3:68315147-68315166 Msa0467100:CDS 30.0%
GTTATTGAAAAGAAAGTTCC+AGG + chr3_3:68315168-68315187 None:intergenic 30.0%
TCGGAATATATTTATGCAGT+CGG + chr3_3:68315267-68315286 None:intergenic 30.0%
ACTGCATAAATATATTCCGA+TGG - chr3_3:68315267-68315286 Msa0467100:intron 30.0%
!!! TTTTGTTTTCCCTTTGGAAA+AGG - chr3_3:68315419-68315438 Msa0467100:five_prime_UTR 30.0%
TGAACTAGTGTTTAAAGACT+TGG - chr3_3:68315453-68315472 Msa0467100:five_prime_UTR 30.0%
AGTAAGAGTAAGACTGAAAT+TGG + chr3_3:68315640-68315659 None:intergenic 30.0%
ATTTCAGTCTTACTCTTACT+AGG - chr3_3:68315640-68315659 Msa0467100:five_prime_UTR 30.0%
TATAAATACAGTGAGCCATA+AGG + chr3_3:68315728-68315747 None:intergenic 30.0%
TGCTTAGCTCAATAAATTCT+TGG + chr3_3:68315978-68315997 None:intergenic 30.0%
CACACATCTATGCCTTAAAA+TGG - chr3_3:68312821-68312840 Msa0467100:intron 35.0%
CACATCTATGCCTTAAAATG+GGG - chr3_3:68312823-68312842 Msa0467100:intron 35.0%
ATGCCTTAAAATGGGGTAAA+TGG - chr3_3:68312830-68312849 Msa0467100:intron 35.0%
GTGTGTTACGTGTGTATAAA+CGG - chr3_3:68312885-68312904 Msa0467100:CDS 35.0%
GAAGAAGAAAGTCATTCTGA+TGG - chr3_3:68313130-68313149 Msa0467100:intron 35.0%
CAATTCCAACTCAGATAATC+CGG - chr3_3:68313157-68313176 Msa0467100:intron 35.0%
AAGCAATGAAGGAAAGTTGA+AGG - chr3_3:68313321-68313340 Msa0467100:intron 35.0%
CAATGTCAATGTCAACACAT+TGG - chr3_3:68313513-68313532 Msa0467100:intron 35.0%
CAATGTCAACACATTGGAAT+TGG - chr3_3:68313519-68313538 Msa0467100:intron 35.0%
TTCAAGAAATTGGACACAGA+TGG - chr3_3:68313556-68313575 Msa0467100:intron 35.0%
! ATAACGGGAAAGTTGGATAT+AGG - chr3_3:68313613-68313632 Msa0467100:intron 35.0%
CTATGAATCTGAAGAGGAAA+TGG - chr3_3:68313705-68313724 Msa0467100:intron 35.0%
! AATACGCTTATGAGAAGCAT+TGG - chr3_3:68313796-68313815 Msa0467100:intron 35.0%
!! TGATGGTAGGATTGATTTTG+AGG - chr3_3:68313876-68313895 Msa0467100:intron 35.0%
GTAGAATGAATTTGATCCAG+TGG + chr3_3:68314009-68314028 None:intergenic 35.0%
CATGATATGGTATGTAGAAG+TGG - chr3_3:68314085-68314104 Msa0467100:intron 35.0%
ACGAGAGTTAAGTACTAACA+TGG - chr3_3:68314134-68314153 Msa0467100:intron 35.0%
TAGCATGACTGCTTAAAGTT+CGG - chr3_3:68314241-68314260 Msa0467100:intron 35.0%
TCGGTAATTGTCAGAAAACA+CGG - chr3_3:68314260-68314279 Msa0467100:intron 35.0%
ACAGTTATTCGCTTGGTATT+CGG - chr3_3:68314307-68314326 Msa0467100:intron 35.0%
! GGTTCGGTCTAATTTAAGAT+TGG + chr3_3:68314535-68314554 None:intergenic 35.0%
GTCGAGTTCAATTAGATTCA+CGG + chr3_3:68314580-68314599 None:intergenic 35.0%
! TTTTCGAAACCATCGCAAAA+TGG - chr3_3:68314873-68314892 Msa0467100:CDS 35.0%
!! GTTGAAAAGTGGATTTGCTA+CGG + chr3_3:68314964-68314983 None:intergenic 35.0%
TGTTTGCAATGGTTGAAAAG+TGG + chr3_3:68314975-68314994 None:intergenic 35.0%
! TATACAGGGCATCATTATTG+TGG - chr3_3:68315226-68315245 Msa0467100:intron 35.0%
TTATTGTGGCCATTTATACC+TGG - chr3_3:68315240-68315259 Msa0467100:intron 35.0%
CGGAATATATTTATGCAGTC+GGG + chr3_3:68315266-68315285 None:intergenic 35.0%
TGGATTACTGGAGTTTGAAT+TGG + chr3_3:68315296-68315315 None:intergenic 35.0%
TAACCTTGAAACTGGATTAC+TGG + chr3_3:68315308-68315327 None:intergenic 35.0%
! TTTGGAAAGCTTGTTTACCA+AGG + chr3_3:68315515-68315534 None:intergenic 35.0%
! ATAGGTCGTATAGTGTTGTT+TGG + chr3_3:68315533-68315552 None:intergenic 35.0%
ATGAAACGTTCAACCCTAAT+GGG + chr3_3:68315616-68315635 None:intergenic 35.0%
AATGAAACGTTCAACCCTAA+TGG + chr3_3:68315617-68315636 None:intergenic 35.0%
GTTGCTTGAAATAAGTAGCA+AGG + chr3_3:68315686-68315705 None:intergenic 35.0%
! CAACATTGCTATTGTCACTT+TGG - chr3_3:68315702-68315721 Msa0467100:five_prime_UTR 35.0%
TTTCAAGGAGAGAGAAACAA+TGG - chr3_3:68315772-68315791 Msa0467100:five_prime_UTR 35.0%
! TTTTTCCATCTCCAATTCCA+AGG + chr3_3:68313533-68313552 None:intergenic 35.0%
AAGAAATTGGAGACCAAAGA+AGG - chr3_3:68315862-68315881 Msa0467100:five_prime_UTR 35.0%
ATCTGATCTAAGAGCGATAA+TGG - chr3_3:68315903-68315922 Msa0467100:five_prime_UTR 35.0%
TCTGATCTAAGAGCGATAAT+GGG - chr3_3:68315904-68315923 Msa0467100:five_prime_UTR 35.0%
! ATAATGGGAAAGTTGGGTAT+AGG - chr3_3:68315919-68315938 Msa0467100:five_prime_UTR 35.0%
ATCTCTTGTAGGTATGATGG+TGG + chr3_3:68312551-68312570 None:intergenic 40.0%
ACCATCATACCTACAAGAGA+TGG - chr3_3:68312550-68312569 Msa0467100:CDS 40.0%
TCCATCTCTTGTAGGTATGA+TGG + chr3_3:68312554-68312573 None:intergenic 40.0%
AAGATGGAAAAGAGTTGTGC+TGG - chr3_3:68312610-68312629 Msa0467100:CDS 40.0%
AGATGGAAAAGAGTTGTGCT+GGG - chr3_3:68312611-68312630 Msa0467100:CDS 40.0%
! GCTCCATTTACCCCATTTTA+AGG + chr3_3:68312836-68312855 None:intergenic 40.0%
GTAAATGGAGCACATCGAAA+TGG - chr3_3:68312845-68312864 Msa0467100:intron 40.0%
!! CGCGTAGAGTATTGTTTAGT+AGG + chr3_3:68313000-68313019 None:intergenic 40.0%
GGGGTTTCGTTCATATGATA+TGG - chr3_3:68313039-68313058 Msa0467100:intron 40.0%
! CGGATTATCTGAGTTGGAAT+TGG + chr3_3:68313159-68313178 None:intergenic 40.0%
CAATTCATAGTAGTGAAGCG+AGG + chr3_3:68313197-68313216 None:intergenic 40.0%
TGAAGGAAAGTTGAAGGACA+TGG - chr3_3:68313327-68313346 Msa0467100:intron 40.0%
GCATTGAATTACACAGAAGC+TGG - chr3_3:68313394-68313413 Msa0467100:intron 40.0%
! GATGACAACAACGATAATGG+AGG + chr3_3:68313461-68313480 None:intergenic 40.0%
CAGCTACGGAGAAACAAAAT+TGG - chr3_3:68313490-68313509 Msa0467100:intron 40.0%
CAACACATTGGAATTGGAGA+TGG - chr3_3:68313525-68313544 Msa0467100:intron 40.0%
AAATTGGACACAGATGGTGA+TGG - chr3_3:68313562-68313581 Msa0467100:intron 40.0%
! CTCAGATCTGAGATCGATAA+CGG - chr3_3:68313597-68313616 Msa0467100:intron 40.0%
! TCAGATCTGAGATCGATAAC+GGG - chr3_3:68313598-68313617 Msa0467100:intron 40.0%
GATATAGGAGATGACGTTGA+TGG - chr3_3:68313628-68313647 Msa0467100:intron 40.0%
AAGCGTATTAAGCTCCTTTG+CGG + chr3_3:68313785-68313804 None:intergenic 40.0%
!! ATTGGTCGTGTTGATAGTGA+TGG - chr3_3:68313853-68313872 Msa0467100:intron 40.0%
!! TTGATAGTGATGGTGATGGT+AGG - chr3_3:68313863-68313882 Msa0467100:intron 40.0%
TATCCATAGACAATTGCCAC+TGG - chr3_3:68313990-68314009 Msa0467100:intron 40.0%
CGGTAATTGTCAGAAAACAC+GGG - chr3_3:68314261-68314280 Msa0467100:intron 40.0%
TAATTGTCAGAAAACACGGG+AGG - chr3_3:68314264-68314283 Msa0467100:intron 40.0%
AATTGTCAGAAAACACGGGA+GGG - chr3_3:68314265-68314284 Msa0467100:intron 40.0%
ACCAATCACAGTTATTCGCT+TGG - chr3_3:68314300-68314319 Msa0467100:intron 40.0%
ACCAAGCGAATAACTGTGAT+TGG + chr3_3:68314304-68314323 None:intergenic 40.0%
CAGTTATTCGCTTGGTATTC+GGG - chr3_3:68314308-68314327 Msa0467100:intron 40.0%
CAAGACGAAAACGTTATAGC+CGG - chr3_3:68314381-68314400 Msa0467100:intron 40.0%
GAAATAGGTTAGGTCTGGTT+TGG - chr3_3:68314497-68314516 Msa0467100:intron 40.0%
AACTATCGCAATACTCCATG+TGG - chr3_3:68314835-68314854 Msa0467100:CDS 40.0%
GAGTTTGAATTGGACTCCAT+CGG + chr3_3:68315286-68315305 None:intergenic 40.0%
ACTCCAGTAATCCAGTTTCA+AGG - chr3_3:68315302-68315321 Msa0467100:CDS 40.0%
CAGTTTCAAGGTTAGTACCT+CGG - chr3_3:68315314-68315333 Msa0467100:CDS 40.0%
ATGCATAGTATAGCAAACCG+AGG + chr3_3:68315334-68315353 None:intergenic 40.0%
! GCTTTTGCTCCTTTTCCAAA+GGG + chr3_3:68315431-68315450 None:intergenic 40.0%
AAGTAGCAAGGCTAAACATG+AGG + chr3_3:68315674-68315693 None:intergenic 40.0%
!! CTATTGTCACTTTGGCCTTA+TGG - chr3_3:68315710-68315729 Msa0467100:five_prime_UTR 40.0%
AGAAACAATGGCATCGCTAA+TGG - chr3_3:68315784-68315803 Msa0467100:five_prime_UTR 40.0%
TGATGACAATAGTAGCACCT+TGG - chr3_3:68315816-68315835 Msa0467100:five_prime_UTR 40.0%
CAATAGTAGCACCTTGGAAT+TGG - chr3_3:68315822-68315841 Msa0467100:five_prime_UTR 40.0%
!! AAGAGCGATAATGGGAAAGT+TGG - chr3_3:68315912-68315931 Msa0467100:five_prime_UTR 40.0%
!! AGAGCGATAATGGGAAAGTT+GGG - chr3_3:68315913-68315932 Msa0467100:five_prime_UTR 40.0%
ATAGGAGACGATGTTGACAA+CGG - chr3_3:68315937-68315956 Msa0467100:five_prime_UTR 40.0%
CTCTTCAGTTTCAGAATGTG+TGG + chr3_3:68316001-68316020 None:intergenic 40.0%
!! CACACATTCTGAAACTGAAG+AGG - chr3_3:68315999-68316018 Msa0467100:five_prime_UTR 40.0%
CATACCTACAAGAGATGGAG+AGG - chr3_3:68312555-68312574 Msa0467100:CDS 45.0%
CAACTGGATTACGATGGAGA+AGG - chr3_3:68312580-68312599 Msa0467100:CDS 45.0%
GATTACGATGGAGAAGGAGA+GGG - chr3_3:68312586-68312605 Msa0467100:CDS 45.0%
ATTACGATGGAGAAGGAGAG+GGG - chr3_3:68312587-68312606 Msa0467100:CDS 45.0%
CATCTTCCTCTCCATCATCA+TGG + chr3_3:68312692-68312711 None:intergenic 45.0%
!! CATGATGATGGAGAGGAAGA+TGG - chr3_3:68312690-68312709 Msa0467100:intron 45.0%
! ATGATGGAGAGGAAGATGGA+AGG - chr3_3:68312694-68312713 Msa0467100:intron 45.0%
TGATGGAGAGGAAGATGGAA+GGG - chr3_3:68312695-68312714 Msa0467100:intron 45.0%
AGGGTATGTCACAGAGAGAA+AGG - chr3_3:68312714-68312733 Msa0467100:intron 45.0%
AGGCATAGATGTGTGACACT+TGG + chr3_3:68312816-68312835 None:intergenic 45.0%
TGAAGCCGGATTATCTGAGT+TGG + chr3_3:68313165-68313184 None:intergenic 45.0%
ACTCAGATAATCCGGCTTCA+AGG - chr3_3:68313165-68313184 Msa0467100:intron 45.0%
!! GAGATCGATAACGGGAAAGT+TGG - chr3_3:68313606-68313625 Msa0467100:intron 45.0%
!! GATGACGTTGATGGCATTGA+TGG - chr3_3:68313637-68313656 Msa0467100:intron 45.0%
!! GTGTATGACATTGATGGCGA+TGG - chr3_3:68313751-68313770 Msa0467100:intron 45.0%
!! CGTGTTGATAGTGATGGTGA+TGG - chr3_3:68313859-68313878 Msa0467100:intron 45.0%
GATCCAGTGGCAATTGTCTA+TGG + chr3_3:68313996-68314015 None:intergenic 45.0%
CCATGTGGTAGTTGTAACGA+CGG - chr3_3:68314850-68314869 Msa0467100:CDS 45.0%
TATATTTATGCAGTCGGGCC+AGG + chr3_3:68315261-68315280 None:intergenic 45.0%
! CGAGGTACTAACCTTGAAAC+TGG + chr3_3:68315316-68315335 None:intergenic 45.0%
! CGCTTTTGCTCCTTTTCCAA+AGG + chr3_3:68315432-68315451 None:intergenic 45.0%
!!! GTTTACCATTTTGGCTGCCT+TGG - chr3_3:68315495-68315514 Msa0467100:five_prime_UTR 45.0%
GTTTACCAAGGCAGCCAAAA+TGG + chr3_3:68315503-68315522 None:intergenic 45.0%
AATAACCGCGGCGATGAAAT+AGG + chr3_3:68315551-68315570 None:intergenic 45.0%
TAGCACCTTGGAATTGGAGA+TGG - chr3_3:68315828-68315847 Msa0467100:five_prime_UTR 45.0%
GACCAAAGAAGGTGATTGCA+AGG - chr3_3:68315873-68315892 Msa0467100:five_prime_UTR 45.0%
GACCTTGCAATCACCTTCTT+TGG + chr3_3:68315878-68315897 None:intergenic 45.0%
TGTGCCTCTCCATCTCTTGT+AGG + chr3_3:68312562-68312581 None:intergenic 50.0%
! AAGAGATGGAGAGGCACAAC+TGG - chr3_3:68312564-68312583 Msa0467100:CDS 50.0%
GAGGCACAACTGGATTACGA+TGG - chr3_3:68312574-68312593 Msa0467100:CDS 50.0%
GGATTACGATGGAGAAGGAG+AGG - chr3_3:68312585-68312604 Msa0467100:CDS 50.0%
GAAAAGAGTTGTGCTGGGAC+AGG - chr3_3:68312616-68312635 Msa0467100:CDS 50.0%
!! GACGTTGATGGCATTGATGG+AGG - chr3_3:68313640-68313659 Msa0467100:intron 50.0%
CGATGGTTTCATCACCGCAA+AGG - chr3_3:68313768-68313787 Msa0467100:intron 50.0%
CCGTCGTTACAACTACCACA+TGG + chr3_3:68314853-68314872 None:intergenic 50.0%
! GTCGCTAGACCATTTTGCGA+TGG + chr3_3:68314885-68314904 None:intergenic 50.0%
ACACCGATATCCTCGATCGT+TGG - chr3_3:68314903-68314922 Msa0467100:CDS 50.0%
CACCGATATCCTCGATCGTT+GGG - chr3_3:68314904-68314923 Msa0467100:CDS 50.0%
ACCGATATCCTCGATCGTTG+GGG - chr3_3:68314905-68314924 Msa0467100:CDS 50.0%
TCCCCAACGATCGAGGATAT+CGG + chr3_3:68314909-68314928 None:intergenic 50.0%
!! TCGCAATGTGCCATTTGCGA+CGG + chr3_3:68314932-68314951 None:intergenic 50.0%
TACGACCTATTTCATCGCCG+CGG - chr3_3:68315543-68315562 Msa0467100:five_prime_UTR 50.0%
TGGAGAAGGAGAGGGGAAGA+TGG - chr3_3:68312594-68312613 Msa0467100:CDS 55.0%
AAGAGTTGTGCTGGGACAGG+AGG - chr3_3:68312619-68312638 Msa0467100:CDS 55.0%
TTGTGCTGGGACAGGAGGAA+AGG - chr3_3:68312624-68312643 Msa0467100:intron 55.0%
TGTGCTGGGACAGGAGGAAA+GGG - chr3_3:68312625-68312644 Msa0467100:intron 55.0%
!! AAGCGGCCATGATGATGGAG+AGG - chr3_3:68312683-68312702 Msa0467100:intron 55.0%
! CGAGGTTCTGACCTTGAAGC+CGG + chr3_3:68313179-68313198 None:intergenic 55.0%
TGTCAGAAAACACGGGAGGG+TGG - chr3_3:68314268-68314287 Msa0467100:intron 55.0%
GCAGTCGGGCCAGGTATAAA+TGG + chr3_3:68315252-68315271 None:intergenic 55.0%
GGAGACGATGTTGACAACGG+AGG - chr3_3:68315940-68315959 Msa0467100:five_prime_UTR 55.0%
GTGCTGGGACAGGAGGAAAG+GGG - chr3_3:68312626-68312645 Msa0467100:intron 60.0%
TGCTGGGACAGGAGGAAAGG+GGG - chr3_3:68312627-68312646 Msa0467100:intron 60.0%
TCGTTGGGGACCGTCGCAAA+TGG - chr3_3:68314919-68314938 Msa0467100:CDS 60.0%
GGCATCGCTAATGGCGACGT+TGG - chr3_3:68315793-68315812 Msa0467100:five_prime_UTR 60.0%
GCTTCCGCCCTTCTCCTCAC+CGG + chr3_3:68312667-68312686 None:intergenic 65.0%
GGTGAGGAGAAGGGCGGAAG+CGG - chr3_3:68312666-68312685 Msa0467100:intron 65.0%
GGCGGAAGCGGCCATGATGA+TGG - chr3_3:68312678-68312697 Msa0467100:intron 65.0%
! GACAGGAGGAAAGGGGGCGC+CGG - chr3_3:68312633-68312652 Msa0467100:intron 70.0%
!! TGCCGGTGCCGGTGAGGAGA+AGG - chr3_3:68312656-68312675 Msa0467100:intron 70.0%
!! GCCGGTGCCGGTGAGGAGAA+GGG - chr3_3:68312657-68312676 Msa0467100:intron 70.0%
GCCCTTCTCCTCACCGGCAC+CGG + chr3_3:68312661-68312680 None:intergenic 70.0%
!! GGTGCCGGTGAGGAGAAGGG+CGG - chr3_3:68312660-68312679 Msa0467100:intron 70.0%
GCGACGGTCCCCAACGATCG+AGG + chr3_3:68314916-68314935 None:intergenic 70.0%
!! AGGAAAGGGGGCGCCGGTGC+CGG - chr3_3:68312639-68312658 Msa0467100:intron 75.0%
!! CTCCTCACCGGCACCGGCAC+CGG + chr3_3:68312655-68312674 None:intergenic 75.0%
!!! CGCCGGTGCCGGTGCCGGTG+AGG - chr3_3:68312650-68312669 Msa0467100:intron 85.0%
!!! GGGGGCGCCGGTGCCGGTGC+CGG - chr3_3:68312645-68312664 Msa0467100:intron 90.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68312435 68316050 68312435 ID=Msa0467100;Name=Msa0467100
chr3_3 mRNA 68312435 68316050 68312435 ID=Msa0467100-mRNA-1;Parent=Msa0467100;Name=Msa0467100-mRNA-1;_AED=0.09;_eAED=0.10;_QI=714|0.14|0.12|1|0.28|0.12|8|0|359
chr3_3 exon 68312435 68312638 68312435 ID=Msa0467100-mRNA-1:exon:15827;Parent=Msa0467100-mRNA-1
chr3_3 exon 68312747 68312823 68312747 ID=Msa0467100-mRNA-1:exon:15826;Parent=Msa0467100-mRNA-1
chr3_3 exon 68312857 68313044 68312857 ID=Msa0467100-mRNA-1:exon:15825;Parent=Msa0467100-mRNA-1
chr3_3 exon 68313162 68313168 68313162 ID=Msa0467100-mRNA-1:exon:15824;Parent=Msa0467100-mRNA-1
chr3_3 exon 68314566 68314789 68314566 ID=Msa0467100-mRNA-1:exon:15823;Parent=Msa0467100-mRNA-1
chr3_3 exon 68314805 68314992 68314805 ID=Msa0467100-mRNA-1:exon:15822;Parent=Msa0467100-mRNA-1
chr3_3 exon 68315017 68315170 68315017 ID=Msa0467100-mRNA-1:exon:15821;Parent=Msa0467100-mRNA-1
chr3_3 exon 68315299 68316050 68315299 ID=Msa0467100-mRNA-1:exon:15820;Parent=Msa0467100-mRNA-1
chr3_3 five_prime_UTR 68315337 68316050 68315337 ID=Msa0467100-mRNA-1:five_prime_utr;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68315299 68315336 68315299 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68315017 68315170 68315017 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68314805 68314992 68314805 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68314566 68314789 68314566 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68313162 68313168 68313162 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68312857 68313044 68312857 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68312747 68312823 68312747 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
chr3_3 CDS 68312435 68312638 68312435 ID=Msa0467100-mRNA-1:cds;Parent=Msa0467100-mRNA-1
Gene Sequence

>Msa0467100

ATGGTTTCCAATTCCAACTCAGATAATCCGGCTTCAAGGATCAAAAGCAATGAAGGAAAGTTGAAGGACATGGCCAAAATCTTATACAAAATGATTGCCGTTTTAGCTGTTTTGTTAGCATTGAATTACACAGAAGCTGGAAACATGTTTTCCAAACAACAATACACAATCTATTTCATCTCCTCCATTATCCTACGGAGAAACAAAATTGGCAATGTCAATGTCAACACATTGGAATTGGAGATGGAAAAACTCTTCAAGAAATTGGACACAGATGGTGATGGAAAGATATCGATCTCAGATCTGAGATCGATAACGGGAAAGTTGGATATAGGAGATGACGTTGATGGCATTGATGGAGGATCTATCACGCTTCAAGACACAACAAACTATGAATCTGAAGAGGAAATGGAAAACTTAAAGGGCACGTTTTCTGTGTATGACATTGATGGCGATGGTTTCATCACCGCAAAGGAGCTTAATACGCTTATGAGAAGCATTGGTCAAGAGTGTTCCTTAGATGAATGTGAAAGAATTATTGGTCGTGTTGATAGTGATGGTGATGGTAGGATTGATTTTGAGGATTTTAGAATCATGATGATGGTTTCAAGGAGCAAAAGCGATGAACTAGTGTTTAAAGACTTGGCCAACATCTTATATAAACTGTTTACCATTTTGGCTGCCTTGGTAAACAAGCTTTCCAAACAACACTATACGACCTATTTCATCGCCGCGGTTATTGTATATTTCTTACTATGGATTCTTCAAACTATTTTAAAACAACCCATTAGGGTTGAACGATCTGTTGCCTCATGTTTAGCCTTGCTACTTATTTCAAGCAACATTGCTATTGTCACTTTGGCCTTATGGCTCACTATGGAAAAAATCTTCAAGAAATTGGAGACCAAAGAAGGTGATTGCAAGGTCTTGATATCTGATCTAAGAGCGATAATGGGAAAGTTGGGTATAGGAGACGATGTTGACAACGGAGGATCTATCACACTCCAAGAATTTATTGAGCTAAGCACCACACATTCTGAAACTGAAGAGGACATAGAAAACATCAAAGATGTGTTTTGA

Protein sequence

>Msa0467100

MVSNSNSDNPASRIKSNEGKLKDMAKILYKMIAVLAVLLALNYTEAGNMFSKQQYTIYFISSIILRRNKIGNVNVNTLELEMEKLFKKLDTDGDGKISISDLRSITGKLDIGDDVDGIDGGSITLQDTTNYESEEEMENLKGTFSVYDIDGDGFITAKELNTLMRSIGQECSLDECERIIGRVDSDGDGRIDFEDFRIMMMVSRSKSDELVFKDLANILYKLFTILAALVNKLSKQHYTTYFIAAVIVYFLLWILQTILKQPIRVERSVASCLALLLISSNIAIVTLALWLTMEKIFKKLETKEGDCKVLISDLRAIMGKLGIGDDVDNGGSITLQEFIELSTTHSETEEDIENIKDVF*