AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456230 MtrunA17_Chr7g0267991 93.132 859 58 1 1 858 1 859 0.0 1655
Msa1456230 MtrunA17_Chr8g0380141 88.162 718 77 2 1 718 1 710 0.0 1327
Msa1456230 MtrunA17_Chr1g0201161 83.505 679 100 2 1 675 1 671 0.0 1178
Msa1456230 MtrunA17_Chr1g0201161 86.243 189 26 0 670 858 735 923 5.45e-103 340
Msa1456230 MtrunA17_Chr7g0270181 91.576 368 24 1 488 855 1 361 0.0 697
Msa1456230 MtrunA17_Chr3g0117141 42.093 860 395 13 1 844 1 773 0.0 669
Msa1456230 MtrunA17_Chr6g0449521 52.017 471 216 6 382 844 306 774 8.22e-166 501
Msa1456230 MtrunA17_Chr6g0449521 40.597 335 154 6 1 307 1 318 3.13e-66 236
Msa1456230 MtrunA17_Chr4g0058701 51.168 471 219 7 383 844 297 765 4.12e-163 494
Msa1456230 MtrunA17_Chr4g0058701 43.396 318 159 7 1 307 1 308 1.77e-68 242
Msa1456230 MtrunA17_Chr5g0447201 39.498 438 246 7 388 819 296 720 4.81e-95 315
Msa1456230 MtrunA17_Chr5g0447201 33.603 247 140 3 71 299 42 282 1.46e-38 154
Msa1456230 MtrunA17_Chr4g0064311 37.292 480 282 7 367 838 345 813 4.82e-95 317
Msa1456230 MtrunA17_Chr4g0064311 34.932 292 151 6 20 302 106 367 7.08e-44 171
Msa1456230 MtrunA17_Chr7g0257731 36.978 503 276 8 363 839 107 594 5.81e-95 310
Msa1456230 MtrunA17_Chr7g0257731 40.602 133 75 1 178 310 1 129 1.91e-24 109
Msa1456230 MtrunA17_Chr3g0116641 38.149 443 253 7 406 840 306 735 3.44e-92 307
Msa1456230 MtrunA17_Chr3g0116641 32.534 292 149 4 27 298 16 279 3.13e-40 159
Msa1456230 MtrunA17_Chr1g0173521 39.101 445 252 7 406 843 350 782 2.24e-90 303
Msa1456230 MtrunA17_Chr1g0173521 36.910 233 139 2 71 299 99 327 2.73e-41 162
Msa1456230 MtrunA17_Chr8g0380131 89.744 117 12 0 742 858 1 117 1.13e-67 220
Msa1456230 MtrunA17_Chr5g0427081 33.566 143 92 2 621 763 12 151 5.14e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456230 AT4G01970.2 57.512 852 342 12 18 858 81 923 0.0 1011
Msa1456230 AT4G01970.1 57.512 852 342 12 18 858 34 876 0.0 1011
Msa1456230 AT5G40390.1 52.484 463 216 4 384 844 310 770 2.15e-172 518
Msa1456230 AT5G40390.1 42.761 297 146 4 18 302 22 306 1.66e-64 231
Msa1456230 AT3G57520.1 34.496 516 290 10 363 847 264 762 5.06e-93 310
Msa1456230 AT3G57520.1 36.667 240 135 3 71 299 42 275 1.25e-41 164
Msa1456230 AT5G20250.3 38.479 447 261 6 388 832 287 721 1.91e-92 308
Msa1456230 AT5G20250.3 34.576 295 155 4 20 299 9 280 1.59e-43 169
Msa1456230 AT5G20250.1 38.479 447 261 6 388 832 287 721 1.91e-92 308
Msa1456230 AT5G20250.1 34.576 295 155 4 20 299 9 280 1.59e-43 169
Msa1456230 AT5G20250.2 38.479 447 261 6 388 832 287 721 1.91e-92 308
Msa1456230 AT5G20250.2 34.576 295 155 4 20 299 9 280 1.59e-43 169
Msa1456230 AT5G20250.4 38.479 447 261 6 388 832 382 816 7.46e-92 308
Msa1456230 AT5G20250.4 34.576 295 155 4 20 299 104 375 3.03e-43 169
Msa1456230 AT1G55740.1 38.938 452 253 8 403 843 303 742 7.10e-90 301
Msa1456230 AT1G55740.1 32.180 289 165 5 20 299 9 275 1.47e-39 157
Msa1456230 AT3G57520.2 35.381 407 243 7 363 766 264 653 4.11e-78 266
Msa1456230 AT3G57520.2 36.667 240 135 3 71 299 42 275 4.91e-42 164
Msa1456230 AT3G57520.3 38.333 300 168 5 363 659 264 549 5.71e-61 217
Msa1456230 AT3G57520.3 36.667 240 135 3 71 299 42 275 1.27e-42 164

Find 204 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACTTTAATTTGGAATTT+TGG 0.099821 tig0037058:+24233 Msa1456230:three_prime_UTR
CCCCTAAACTTGTGCTCTTT+TGG 0.125940 tig0037058:-23658 None:intergenic
AAACAACTGTTCTCAAAATT+TGG 0.128848 tig0037058:+23282 Msa1456230:CDS
AATTGAATTGGTTCAGATTT+TGG 0.163451 tig0037058:-23826 None:intergenic
CCAAATTTAGTTGATAAATT+TGG 0.169026 tig0037058:+21454 Msa1456230:CDS
AGAGGAAAATGTATGCATTT+TGG 0.172365 tig0037058:-23218 None:intergenic
TTTATCTGAGGGAAAGTTTA+AGG 0.176920 tig0037058:+20871 Msa1456230:CDS
CCAAATTTATCAACTAAATT+TGG 0.182749 tig0037058:-21454 None:intergenic
CATTTCTCTTAACTTTAATT+TGG 0.183688 tig0037058:+24225 Msa1456230:three_prime_UTR
TCCATTTCCATTAAAATTCT+TGG 0.200527 tig0037058:-22742 None:intergenic
ATCATTCCTATAATTGAAAA+AGG 0.215479 tig0037058:+21229 Msa1456230:CDS
ACTATTGGCTTGTAGCATTC+AGG 0.242224 tig0037058:-23685 None:intergenic
TATGAAAGTGGATTGTTATT+AGG 0.257420 tig0037058:+21712 Msa1456230:CDS
CCATTCAATTGAAACTTCTT+TGG 0.259667 tig0037058:-24048 None:intergenic
AAGAGGCTTATAGTGTTATA+AGG 0.261390 tig0037058:+21389 Msa1456230:CDS
ACATTATCACTCAAATAAAT+TGG 0.261796 tig0037058:-23140 None:intergenic
GGATTAAAAGGAGGTGAATT+AGG 0.268125 tig0037058:-21736 None:intergenic
TCTCACAAAGGAGGTTTCTT+TGG 0.273391 tig0037058:+21016 Msa1456230:CDS
ACAGCATAGGATTTGATTTC+AGG 0.273633 tig0037058:-21205 None:intergenic
TGAAAGTGGTGCAAAGATTA+AGG 0.276825 tig0037058:+23984 Msa1456230:CDS
GGAATTGAACATGAGCATTT+GGG 0.290038 tig0037058:+21787 Msa1456230:CDS
AACATCAAATTTGCACCAAT+TGG 0.297810 tig0037058:+23910 Msa1456230:CDS
TTTATCTAAGAGTTCTGATT+TGG 0.304861 tig0037058:+21831 Msa1456230:CDS
TGAAGTGGCGTTTGAGTGGC+TGG 0.307659 tig0037058:+24074 Msa1456230:CDS
GGCTGCTGGTGTTTCTGATT+TGG 0.316228 tig0037058:+24137 Msa1456230:CDS
ATGCTCATGTTCAATTCCTT+TGG 0.319521 tig0037058:-21782 None:intergenic
GAAGAAAGAAGCATCTGATT+TGG 0.320028 tig0037058:+23744 Msa1456230:CDS
CACTCTTATCTTGCTGAATC+TGG 0.323017 tig0037058:+22228 Msa1456230:CDS
ATTGTTCCTATAATAGCTTA+TGG 0.323339 tig0037058:+23024 Msa1456230:CDS
TCCCATCCATAAGCTATTAT+AGG 0.323482 tig0037058:-23030 None:intergenic
AGGAATTGAACATGAGCATT+TGG 0.323538 tig0037058:+21786 Msa1456230:CDS
CCAAAGAAGTTTCAATTGAA+TGG 0.327615 tig0037058:+24048 Msa1456230:CDS
AAGTTTGCAAGGGACAATTT+TGG 0.329394 tig0037058:-22097 None:intergenic
AAAGAAATTGATGATCTCTT+TGG 0.331904 tig0037058:+21886 Msa1456230:CDS
TGGTGGAACAATTCTTGATT+TGG 0.333054 tig0037058:+23954 Msa1456230:CDS
TTTGTTCCAGTCACAAAGTT+TGG 0.335025 tig0037058:+23883 Msa1456230:CDS
GGTGCAAAGATTAAGGTTAA+AGG 0.343844 tig0037058:+23991 Msa1456230:CDS
CCCAAAAGAGCACAAGTTTA+GGG 0.345555 tig0037058:+23657 Msa1456230:CDS
ACCCAAAAGAGCACAAGTTT+AGG 0.346754 tig0037058:+23656 Msa1456230:CDS
TGTGTGCAGGGGACGACTTT+TGG 0.348233 tig0037058:+22940 Msa1456230:intron
GTATTAAGATGTGTGGTTCC+TGG 0.349633 tig0037058:-22075 None:intergenic
TGATAGATTGATGAATTCAT+TGG 0.350934 tig0037058:+21060 Msa1456230:CDS
AATTCATTGGGTAGTTTCAA+TGG 0.355636 tig0037058:+21073 Msa1456230:CDS
TGTTGCAAGGAAAAGGAGTA+TGG 0.358061 tig0037058:+21955 Msa1456230:CDS
ACTCAATGGGTTGGTAAATC+TGG 0.360875 tig0037058:+21139 Msa1456230:CDS
TTGGATCACCATTAGGATCT+TGG 0.360993 tig0037058:-22965 None:intergenic
TCTATCAGATGGGGTTTCAT+TGG 0.361535 tig0037058:-21044 None:intergenic
AAACTTTCGCCTGGCCTTGA+TGG 0.362411 tig0037058:+22114 Msa1456230:CDS
AATTGACTCTCAATGTTCCT+TGG 0.365903 tig0037058:+24106 Msa1456230:CDS
AAAATTGTTGAAGGTTCAAT+TGG 0.374085 tig0037058:+22162 Msa1456230:CDS
GCATGCATTATGTGGTGCTT+GGG 0.377719 tig0037058:+22041 Msa1456230:CDS
GCTTGGGGTGGTGTGAGGCC+AGG 0.381667 tig0037058:+22057 Msa1456230:CDS
GATGCAAAGAATCTTGTTCT+TGG 0.383283 tig0037058:+21631 Msa1456230:CDS
GAATATGTGTGTGATAAATA+TGG 0.383570 tig0037058:+22666 Msa1456230:CDS
CTTGCTGAATCTGGCGTCAC+AGG 0.389510 tig0037058:+22237 Msa1456230:CDS
ATAAATTTGGTTGGTGTACT+TGG 0.391671 tig0037058:+21467 Msa1456230:CDS
AAGAAAGAAGCATCTGATTT+GGG 0.399298 tig0037058:+23745 Msa1456230:CDS
GAGGACTAAGTTCAAAGGTT+TGG 0.399831 tig0037058:+22002 Msa1456230:CDS
CATGAAATTTAGCACAAATA+TGG 0.402279 tig0037058:-23091 None:intergenic
GCTTTCAACTGTCAAGGGGC+AGG 0.405154 tig0037058:+23628 Msa1456230:CDS
AGATCAACGGTTGTGGAATT+CGG 0.405372 tig0037058:-20824 None:intergenic
GCCTCTTTCATCAAATCATA+AGG 0.410886 tig0037058:-21373 None:intergenic
ATCTGGTTCTGATTTACAAA+TGG 0.419921 tig0037058:+21156 Msa1456230:CDS
GGCATGCATTATGTGGTGCT+TGG 0.419974 tig0037058:+22040 Msa1456230:CDS
TCCATTAAAATTCTTGGCAA+TGG 0.426719 tig0037058:-22736 None:intergenic
TATTTAACTGTTAATCCTGT+TGG 0.427385 tig0037058:+21499 Msa1456230:CDS
TCCTTATGATTTGATGAAAG+AGG 0.429052 tig0037058:+21372 Msa1456230:CDS
TAACCCTTCATAGTAAGCTT+TGG 0.430154 tig0037058:-22706 None:intergenic
GGTTGAATGATAAATTGAAT+TGG 0.432932 tig0037058:-23838 None:intergenic
GACAGATGATTCGACCTGAT+TGG 0.433474 tig0037058:+23051 Msa1456230:CDS
GACTGAAACATGTCCCAATC+AGG 0.434533 tig0037058:-23065 None:intergenic
TGGATGGCAAAGCATTAGTT+TGG 0.435861 tig0037058:+21588 Msa1456230:CDS
ACATGCACAGTACCAACTAT+TGG 0.438454 tig0037058:-23700 None:intergenic
AGGCTTTCACAAGGGATTTG+AGG 0.440238 tig0037058:+21983 Msa1456230:CDS
CTATTGGCTTGTAGCATTCA+GGG 0.449437 tig0037058:-23684 None:intergenic
CCTTGGATTGATGAGGCTGC+TGG 0.450440 tig0037058:+24123 Msa1456230:CDS
GCTCCCATTGGATCACCATT+AGG 0.450911 tig0037058:-22972 None:intergenic
AGAGGCTTATAGTGTTATAA+GGG 0.452259 tig0037058:+21390 Msa1456230:CDS
TTGCTGAATCTGGCGTCACA+GGG 0.453056 tig0037058:+22238 Msa1456230:CDS
TTGAAAAGACAATCTCTAGT+AGG 0.453990 tig0037058:-23242 None:intergenic
ATTTACAAATGGAAACTCAA+TGG 0.457763 tig0037058:+21167 Msa1456230:CDS
GTCCCTTGCAAACTTTCGCC+TGG 0.458122 tig0037058:+22105 Msa1456230:CDS
AGGTTCGTTATCATTGATGA+TGG 0.458921 tig0037058:+21568 Msa1456230:CDS
ACATCAAATTTGCACCAATT+GGG 0.460655 tig0037058:+23911 Msa1456230:CDS
CTTTCAACTGTCAAGGGGCA+GGG 0.461758 tig0037058:+23629 Msa1456230:CDS
ATCAGTCAATTGAAATAGAA+AGG 0.464390 tig0037058:-24311 None:intergenic
GAAATTGATGATCTCTTTGG+TGG 0.465614 tig0037058:+21889 Msa1456230:CDS
CTTGCCAAAGCTTACTATGA+AGG 0.466120 tig0037058:+22702 Msa1456230:CDS
TTCCTATAATAGCTTATGGA+TGG 0.466764 tig0037058:+23028 Msa1456230:CDS
AAACAGTATGGAGGAGTGAT+TGG 0.468721 tig0037058:+23604 Msa1456230:intron
AAACATGGTGGTCTACTCAA+TGG 0.471026 tig0037058:+21125 Msa1456230:CDS
GCTGTGGTTAAAATTGTTGA+AGG 0.473872 tig0037058:+22153 Msa1456230:CDS
TTTGATGAGATCAACGGTTG+TGG 0.474107 tig0037058:-20831 None:intergenic
GGAAAAGGAGTATGGTTTGA+AGG 0.477848 tig0037058:+21963 Msa1456230:CDS
ATTGAAATAGAAAGGCAATA+TGG 0.483856 tig0037058:-24303 None:intergenic
ACAGATGATTCGACCTGATT+GGG 0.492428 tig0037058:+23052 Msa1456230:CDS
GATAGATTGATGAATTCATT+GGG 0.493686 tig0037058:+21061 Msa1456230:CDS
TGGAACAAAGCAAGTTTCCA+TGG 0.495682 tig0037058:+22806 Msa1456230:CDS
TCCATTGTTCCATCAAGGCC+AGG 0.498579 tig0037058:-22123 None:intergenic
TATGTGTGGCATGCATTATG+TGG 0.498900 tig0037058:+22033 Msa1456230:CDS
ACTGGAAGGCTTCGTAGGCT+TGG 0.499891 tig0037058:+21667 Msa1456230:CDS
TGGAAACTTGCTTTGTTCCA+AGG 0.501688 tig0037058:-22803 None:intergenic
AAGCTTGTGTTGCAAGGAAA+AGG 0.501879 tig0037058:+21948 Msa1456230:CDS
TTGCTTACCAACTCTTCCCA+TGG 0.504038 tig0037058:-22823 None:intergenic
GAATTCATCAATCTATCAGA+TGG 0.508626 tig0037058:-21055 None:intergenic
TCATTATTTGATTTATCTGA+GGG 0.509766 tig0037058:+20860 Msa1456230:CDS
CAAGTTTCCATGGGAAGAGT+TGG 0.510287 tig0037058:+22816 Msa1456230:CDS
CAATGTTCCTTGGATTGATG+AGG 0.510869 tig0037058:+24116 Msa1456230:CDS
TTGCCACCAAACTTTGTGAC+TGG 0.510959 tig0037058:-23889 None:intergenic
GAACTGAAAGAAACATTCTC+AGG 0.511175 tig0037058:-20923 None:intergenic
AACATGGTGGTCTACTCAAT+GGG 0.514470 tig0037058:+21126 Msa1456230:CDS
ATTTGTGCTAAATTTCATGC+TGG 0.516195 tig0037058:+23095 Msa1456230:CDS
GCGATTCACTTGAATAAGCA+AGG 0.518180 tig0037058:-24026 None:intergenic
ATTAAGGAGTTGATTTCCAA+AGG 0.521590 tig0037058:+21766 Msa1456230:CDS
CAACTGTCAAGGGGCAGGGT+GGG 0.523724 tig0037058:+23633 Msa1456230:CDS
GATCTTCCATTGTTCCATCA+AGG 0.523766 tig0037058:-22128 None:intergenic
GTGGAATTCGGTGGAGCCAT+GGG 0.526067 tig0037058:-20812 None:intergenic
TGCATGTAACTGAAGTTGAA+TGG 0.527632 tig0037058:+23716 Msa1456230:CDS
ATTGGTGCTTTCAACTGTCA+AGG 0.528036 tig0037058:+23622 Msa1456230:CDS
GAATGCTACAAGCCAATAGT+TGG 0.529509 tig0037058:+23688 Msa1456230:CDS
GCGTTTGAGTGGCTGGGTGA+TGG 0.533274 tig0037058:+24081 Msa1456230:CDS
CCAAAAGAGCACAAGTTTAG+GGG 0.533366 tig0037058:+23658 Msa1456230:CDS
AACATGTTGGTCAACCCAAT+TGG 0.534399 tig0037058:-23925 None:intergenic
GTTCCAGTCACAAAGTTTGG+TGG 0.534941 tig0037058:+23886 Msa1456230:CDS
GCTGGCTCAAGAGCTATTTG+TGG 0.541307 tig0037058:+23113 Msa1456230:CDS
GTGGTGCTTGGGGTGGTGTG+AGG 0.542369 tig0037058:+22052 Msa1456230:CDS
TAAATTTGGTTGGTGTACTT+GGG 0.545091 tig0037058:+21468 Msa1456230:CDS
GTCATTATTTGATTTATCTG+AGG 0.545173 tig0037058:+20859 Msa1456230:CDS
AATTCATCAATCTATCAGAT+GGG 0.545924 tig0037058:-21054 None:intergenic
AGATCCTAATGGTGATCCAA+TGG 0.546823 tig0037058:+22968 Msa1456230:CDS
TCGTTATCATTGATGATGGA+TGG 0.546866 tig0037058:+21572 Msa1456230:CDS
TCCTATAATAGCTTATGGAT+GGG 0.546975 tig0037058:+23029 Msa1456230:CDS
GCATGTAACTGAAGTTGAAT+GGG 0.548533 tig0037058:+23717 Msa1456230:CDS
AAGATTAAGGTTAAAGGTGG+CGG 0.548754 tig0037058:+23997 Msa1456230:CDS
AGACAATCTCTAGTAGGAAG+AGG 0.549867 tig0037058:-23236 None:intergenic
TGTGGAATTCGGTGGAGCCA+TGG 0.550203 tig0037058:-20813 None:intergenic
GTCATGATTTATGCTGAAAG+TGG 0.552756 tig0037058:+21289 Msa1456230:CDS
TCAATTGAATGGTTCTGAAG+TGG 0.554683 tig0037058:+24059 Msa1456230:CDS
CAAAAGGCGGCGTTGAACCA+AGG 0.555881 tig0037058:+21548 Msa1456230:CDS
TTGGTGCTTTCAACTGTCAA+GGG 0.555981 tig0037058:+23623 Msa1456230:CDS
AGAAGCATCTGATTTGGGTA+AGG 0.557243 tig0037058:+23750 Msa1456230:CDS
AAGAAACTTGTGTTCCCTGA+TGG 0.557362 tig0037058:+23188 Msa1456230:CDS
CATGCATTATGTGGTGCTTG+GGG 0.560019 tig0037058:+22042 Msa1456230:CDS
ATTTAGTTGATAAATTTGGT+TGG 0.560697 tig0037058:+21458 Msa1456230:CDS
ATTTATTTGAGTGATAATGT+TGG 0.562359 tig0037058:+23143 Msa1456230:CDS
GATCCTAATGGTGATCCAAT+GGG 0.563604 tig0037058:+22969 Msa1456230:CDS
AAACATTCTCAGGAACATCA+TGG 0.565376 tig0037058:-20913 None:intergenic
TTGCCAAAGCTTACTATGAA+GGG 0.565388 tig0037058:+22703 Msa1456230:CDS
CAAAATTTGGAACTTCAACA+AGG 0.568909 tig0037058:+23295 Msa1456230:CDS
GCAAAGAATCTTGTTCTTGG+TGG 0.572951 tig0037058:+21634 Msa1456230:CDS
TTCAGCAAGATAAGAGTGCA+TGG 0.574107 tig0037058:-22223 None:intergenic
AAATGACTGGAAGGCTTCGT+AGG 0.575794 tig0037058:+21662 Msa1456230:CDS
AGGCAATATGGTCCAAAACA+AGG 0.578922 tig0037058:-24291 None:intergenic
TGCTGAAAGTGGTTCAACAA+AGG 0.580908 tig0037058:+21300 Msa1456230:CDS
TATGGTCCAAAACAAGGGAG+GGG 0.582567 tig0037058:-24285 None:intergenic
GATTTGAGGACTAAGTTCAA+AGG 0.583446 tig0037058:+21997 Msa1456230:CDS
TCCACCACTATTGAACATGT+TGG 0.584769 tig0037058:-23938 None:intergenic
GGAACAAAGCAAGTTTCCAT+GGG 0.587236 tig0037058:+22807 Msa1456230:CDS
AGGCCAGGCGAAAGTTTGCA+AGG 0.591165 tig0037058:-22108 None:intergenic
AAAATTGTATAGCTCAAATG+TGG 0.591781 tig0037058:-23863 None:intergenic
GGCAATATGGTCCAAAACAA+GGG 0.592551 tig0037058:-24290 None:intergenic
AGGTGGGGCATTTGAATCAG+AGG 0.593587 tig0037058:-20966 None:intergenic
GGTGGGGCATTTGAATCAGA+GGG 0.593672 tig0037058:-20965 None:intergenic
TATAGGAATGATCACAGCAT+AGG 0.594324 tig0037058:-21218 None:intergenic
TGGCAAAGCATTAGTTTGGA+TGG 0.596303 tig0037058:+21592 Msa1456230:CDS
ATGACATGATCATCAGAACC+TGG 0.596806 tig0037058:-21271 None:intergenic
GGCTCAAGAGCTATTTGTGG+TGG 0.597968 tig0037058:+23116 Msa1456230:CDS
GATTTGGAATATGTTGAAAG+TGG 0.598008 tig0037058:+23970 Msa1456230:CDS
TCAACTGTCAAGGGGCAGGG+TGG 0.598050 tig0037058:+23632 Msa1456230:CDS
GAATTGAACATGAGCATTTG+GGG 0.600360 tig0037058:+21788 Msa1456230:CDS
ATGGTTTGAAGGCTTTCACA+AGG 0.601600 tig0037058:+21974 Msa1456230:CDS
CTTGGTGGTGAACAAATGAC+TGG 0.601615 tig0037058:+21649 Msa1456230:CDS
TTGACCAACATGTTCAATAG+TGG 0.601821 tig0037058:+23934 Msa1456230:CDS
GCCTGGCCTTGATGGAACAA+TGG 0.602128 tig0037058:+22122 Msa1456230:CDS
TGGTTTGAAGGCTTTCACAA+GGG 0.602786 tig0037058:+21975 Msa1456230:CDS
GGGTAAGGCAGAAGAGTATG+TGG 0.602965 tig0037058:+23765 Msa1456230:CDS
ACCAACATGTTCAATAGTGG+TGG 0.603550 tig0037058:+23937 Msa1456230:CDS
GCATTATGTGGTGCTTGGGG+TGG 0.604624 tig0037058:+22045 Msa1456230:CDS
GAGGGAAAGTTTAAGGTGAG+AGG 0.604806 tig0037058:+20878 Msa1456230:CDS
CTTCATAGTAAGCTTTGGCA+AGG 0.607720 tig0037058:-22701 None:intergenic
TCATCAATGATAACGAACCT+TGG 0.607763 tig0037058:-21565 None:intergenic
ATATGGTCCAAAACAAGGGA+GGG 0.611470 tig0037058:-24286 None:intergenic
TCAGGAACATCATGGAACAA+AGG 0.625935 tig0037058:-20905 None:intergenic
TGGTGGTCTACTCAATGGGT+TGG 0.627621 tig0037058:+21130 Msa1456230:CDS
GGCCAGGCGAAAGTTTGCAA+GGG 0.627878 tig0037058:-22107 None:intergenic
AGGCTTCGTAGGCTTGGTGA+AGG 0.628128 tig0037058:+21673 Msa1456230:CDS
GTGGTGAACAAATGACTGGA+AGG 0.628570 tig0037058:+21653 Msa1456230:CDS
GAAGTGGCGTTTGAGTGGCT+GGG 0.630895 tig0037058:+24075 Msa1456230:CDS
TCAACGGTTGTGGAATTCGG+TGG 0.631067 tig0037058:-20821 None:intergenic
GTTCTGAAGTGGCGTTTGAG+TGG 0.631457 tig0037058:+24070 Msa1456230:CDS
TCATATATAAAACAGTATGG+AGG 0.631649 tig0037058:+23595 Msa1456230:intron
CAAAAGAGCACAAGTTTAGG+GGG 0.633226 tig0037058:+23659 Msa1456230:CDS
TGGTGCTTTCAACTGTCAAG+GGG 0.636041 tig0037058:+23624 Msa1456230:CDS
TTGTATAGCTCAAATGTGGA+TGG 0.640248 tig0037058:-23859 None:intergenic
ATTCATCAATCTATCAGATG+GGG 0.644616 tig0037058:-21053 None:intergenic
CCAGCAGCCTCATCAATCCA+AGG 0.644799 tig0037058:-24123 None:intergenic
AATATGGTCCAAAACAAGGG+AGG 0.648079 tig0037058:-24287 None:intergenic
GCAAAGATTAAGGTTAAAGG+TGG 0.650425 tig0037058:+23994 Msa1456230:CDS
ATGTGGAAGCTTGTGTTGCA+AGG 0.653096 tig0037058:+21942 Msa1456230:CDS
GTTTGGATGATGTTTATGTG+TGG 0.662366 tig0037058:+22019 Msa1456230:CDS
TATGTGTGTGATAAATATGG+AGG 0.686908 tig0037058:+22669 Msa1456230:CDS
TGCTGAATCTGGCGTCACAG+GGG 0.702078 tig0037058:+22239 Msa1456230:CDS
AACAATGGAAGATCTTGCTG+TGG 0.739747 tig0037058:+22137 Msa1456230:CDS
GGATGGTGCTGATCATAACG+AGG 0.786161 tig0037058:+21609 Msa1456230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTAACTATTAGTTAATT+TGG - tig0037058:22369-22388 None:intergenic 15.0%
!! TATGTACAAAAAAGTTTATA+AGG - tig0037058:22461-22480 None:intergenic 15.0%
!! ATAAAAAAGCGATTATTATT+TGG - tig0037058:22632-22651 None:intergenic 15.0%
!!! TTTTCATATATAAAACAGTA+TGG + tig0037058:23592-23611 Msa1456230:intron 15.0%
!!! TTAACTTTAATTTGGAATTT+TGG + tig0037058:24233-24252 Msa1456230:three_prime_UTR 15.0%
!!! TCATTATTTGATTTATCTGA+GGG + tig0037058:20860-20879 Msa1456230:CDS 20.0%
!! ATCATTCCTATAATTGAAAA+AGG + tig0037058:21229-21248 Msa1456230:CDS 20.0%
!!! CTAAAACCTTTTTCAATTAT+AGG - tig0037058:21238-21257 None:intergenic 20.0%
!!! CTATAATTGAAAAAGGTTTT+AGG + tig0037058:21236-21255 Msa1456230:CDS 20.0%
!! CCAAATTTATCAACTAAATT+TGG - tig0037058:21457-21476 None:intergenic 20.0%
!!! CCAAATTTAGTTGATAAATT+TGG + tig0037058:21454-21473 Msa1456230:CDS 20.0%
!!! ATTTAGTTGATAAATTTGGT+TGG + tig0037058:21458-21477 Msa1456230:CDS 20.0%
!! AAGTTCAAAAAATATGAAAG+TGG + tig0037058:21700-21719 Msa1456230:CDS 20.0%
!!! TTAATCGTTTTTGGATTAAA+AGG - tig0037058:21751-21770 None:intergenic 20.0%
!!! TTTTAATCCAAAAACGATTA+AGG + tig0037058:21750-21769 Msa1456230:CDS 20.0%
!! TGTTGAAATATAATAGTTAG+CGG + tig0037058:22419-22438 Msa1456230:intron 20.0%
!!! CAGTGTATTTGATTTAAAAA+AGG - tig0037058:22547-22566 None:intergenic 20.0%
!! ACATTATCACTCAAATAAAT+TGG - tig0037058:23143-23162 None:intergenic 20.0%
!!! ATTTATTTGAGTGATAATGT+TGG + tig0037058:23143-23162 Msa1456230:CDS 20.0%
!!! CTTTGCATATTTATTTTTGA+TGG + tig0037058:23374-23393 Msa1456230:intron 20.0%
!! CTTCAAAAAAAAAAGCTTAT+AGG - tig0037058:23537-23556 None:intergenic 20.0%
!! GTTATTACATAATAGCTTAT+AGG - tig0037058:23567-23586 None:intergenic 20.0%
!! CATTTCTCTTAACTTTAATT+TGG + tig0037058:24225-24244 Msa1456230:three_prime_UTR 20.0%
!! GTCATTATTTGATTTATCTG+AGG + tig0037058:20859-20878 Msa1456230:CDS 25.0%
!! AAAAAGCAAGAACTTTTTGA+AGG - tig0037058:20997-21016 None:intergenic 25.0%
! AATTCATCAATCTATCAGAT+GGG - tig0037058:21057-21076 None:intergenic 25.0%
! TGATAGATTGATGAATTCAT+TGG + tig0037058:21060-21079 Msa1456230:CDS 25.0%
! GATAGATTGATGAATTCATT+GGG + tig0037058:21061-21080 Msa1456230:CDS 25.0%
! ATTTACAAATGGAAACTCAA+TGG + tig0037058:21167-21186 Msa1456230:CDS 25.0%
! TATTTAACTGTTAATCCTGT+TGG + tig0037058:21499-21518 Msa1456230:CDS 25.0%
!!! TATGAAAGTGGATTGTTATT+AGG + tig0037058:21712-21731 Msa1456230:CDS 25.0%
!! TTTATCTAAGAGTTCTGATT+TGG + tig0037058:21831-21850 Msa1456230:CDS 25.0%
!! AAAGAAATTGATGATCTCTT+TGG + tig0037058:21886-21905 Msa1456230:CDS 25.0%
!!! AATTTTGGTATTAAGATGTG+TGG - tig0037058:22085-22104 None:intergenic 25.0%
! AAAATTGTTGAAGGTTCAAT+TGG + tig0037058:22162-22181 Msa1456230:CDS 25.0%
! CATGGAATCATAAAAATCAT+TGG - tig0037058:22208-22227 None:intergenic 25.0%
! GAATATGTGTGTGATAAATA+TGG + tig0037058:22666-22685 Msa1456230:CDS 25.0%
! TCCATTTCCATTAAAATTCT+TGG - tig0037058:22745-22764 None:intergenic 25.0%
! ATTGTTCCTATAATAGCTTA+TGG + tig0037058:23024-23043 Msa1456230:CDS 25.0%
! CATGAAATTTAGCACAAATA+TGG - tig0037058:23094-23113 None:intergenic 25.0%
! AAACAACTGTTCTCAAAATT+TGG + tig0037058:23282-23301 Msa1456230:CDS 25.0%
! TTATAGGAATACAAGAAACA+CGG - tig0037058:23521-23540 None:intergenic 25.0%
! TCATATATAAAACAGTATGG+AGG + tig0037058:23595-23614 Msa1456230:intron 25.0%
!!! AATTGAATTGGTTCAGATTT+TGG - tig0037058:23829-23848 None:intergenic 25.0%
! GGTTGAATGATAAATTGAAT+TGG - tig0037058:23841-23860 None:intergenic 25.0%
! AAAATTGTATAGCTCAAATG+TGG - tig0037058:23866-23885 None:intergenic 25.0%
! ATTGAAATAGAAAGGCAATA+TGG - tig0037058:24306-24325 None:intergenic 25.0%
! ATCAGTCAATTGAAATAGAA+AGG - tig0037058:24314-24333 None:intergenic 25.0%
CCATGGGAAGAAAAAAAAAA+CGG - tig0037058:20799-20818 None:intergenic 30.0%
TTTATCTGAGGGAAAGTTTA+AGG + tig0037058:20871-20890 Msa1456230:CDS 30.0%
ATTCATCAATCTATCAGATG+GGG - tig0037058:21056-21075 None:intergenic 30.0%
GAATTCATCAATCTATCAGA+TGG - tig0037058:21058-21077 None:intergenic 30.0%
AATTCATTGGGTAGTTTCAA+TGG + tig0037058:21073-21092 Msa1456230:CDS 30.0%
! AAGACTTTGTCAGTATTTTC+AGG + tig0037058:21098-21117 Msa1456230:CDS 30.0%
!!! GTATTTTCAGGTTCAAAACA+TGG + tig0037058:21110-21129 Msa1456230:CDS 30.0%
!! ATCTGGTTCTGATTTACAAA+TGG + tig0037058:21156-21175 Msa1456230:CDS 30.0%
TCCTTATGATTTGATGAAAG+AGG + tig0037058:21372-21391 Msa1456230:CDS 30.0%
AAGAGGCTTATAGTGTTATA+AGG + tig0037058:21389-21408 Msa1456230:CDS 30.0%
AGAGGCTTATAGTGTTATAA+GGG + tig0037058:21390-21409 Msa1456230:CDS 30.0%
!!! TCTCAACACTTTTAGGTTAT+TGG + tig0037058:21417-21436 Msa1456230:CDS 30.0%
! ATAAATTTGGTTGGTGTACT+TGG + tig0037058:21467-21486 Msa1456230:CDS 30.0%
! TAAATTTGGTTGGTGTACTT+GGG + tig0037058:21468-21487 Msa1456230:CDS 30.0%
!! ATCGTTTTTGGATTAAAAGG+AGG - tig0037058:21748-21767 None:intergenic 30.0%
! ATCAACTCCTTAATCGTTTT+TGG - tig0037058:21760-21779 None:intergenic 30.0%
! ATTAAGGAGTTGATTTCCAA+AGG + tig0037058:21766-21785 Msa1456230:CDS 30.0%
AGTGTTCAAAAAAGTGAATG+TGG + tig0037058:21925-21944 Msa1456230:CDS 30.0%
!! TAAAAATCATTGGCTTGATC+AGG - tig0037058:22198-22217 None:intergenic 30.0%
TATGTGTGTGATAAATATGG+AGG + tig0037058:22669-22688 Msa1456230:CDS 30.0%
! TCCATTGCCAAGAATTTTAA+TGG + tig0037058:22735-22754 Msa1456230:CDS 30.0%
TCCATTAAAATTCTTGGCAA+TGG - tig0037058:22739-22758 None:intergenic 30.0%
!! GCCAAGAATTTTAATGGAAA+TGG + tig0037058:22741-22760 Msa1456230:CDS 30.0%
!!! TGCAATGATTTTTTCTTCCT+TGG + tig0037058:22786-22805 Msa1456230:CDS 30.0%
TTCCTATAATAGCTTATGGA+TGG + tig0037058:23028-23047 Msa1456230:CDS 30.0%
TCCTATAATAGCTTATGGAT+GGG + tig0037058:23029-23048 Msa1456230:CDS 30.0%
ATTTGTGCTAAATTTCATGC+TGG + tig0037058:23095-23114 Msa1456230:CDS 30.0%
! GAGGAAAATGTATGCATTTT+GGG - tig0037058:23220-23239 None:intergenic 30.0%
! AGAGGAAAATGTATGCATTT+TGG - tig0037058:23221-23240 None:intergenic 30.0%
TTGAAAAGACAATCTCTAGT+AGG - tig0037058:23245-23264 None:intergenic 30.0%
!! CAGTTGTTTTGTCAAATAGA+GGG - tig0037058:23271-23290 None:intergenic 30.0%
!! ACAGTTGTTTTGTCAAATAG+AGG - tig0037058:23272-23291 None:intergenic 30.0%
! CAAAATTTGGAACTTCAACA+AGG + tig0037058:23295-23314 Msa1456230:CDS 30.0%
TATTATCTTACACTGACACA+TGG + tig0037058:23420-23439 Msa1456230:intron 30.0%
!! AAGAAAGAAGCATCTGATTT+GGG + tig0037058:23745-23764 Msa1456230:CDS 30.0%
AACATCAAATTTGCACCAAT+TGG + tig0037058:23910-23929 Msa1456230:CDS 30.0%
ACATCAAATTTGCACCAATT+GGG + tig0037058:23911-23930 Msa1456230:CDS 30.0%
! GATTTGGAATATGTTGAAAG+TGG + tig0037058:23970-23989 Msa1456230:CDS 30.0%
CCATTCAATTGAAACTTCTT+TGG - tig0037058:24051-24070 None:intergenic 30.0%
CCAAAGAAGTTTCAATTGAA+TGG + tig0037058:24048-24067 Msa1456230:CDS 30.0%
!!! CCGTTTTTTTTTTCTTCCCA+TGG + tig0037058:20796-20815 Msa1456230:exon 35.0%
!! CTCAGTTTTGATGAGATCAA+CGG - tig0037058:20840-20859 None:intergenic 35.0%
AAACATTCTCAGGAACATCA+TGG - tig0037058:20916-20935 None:intergenic 35.0%
GAACTGAAAGAAACATTCTC+AGG - tig0037058:20926-20945 None:intergenic 35.0%
!! AGAACTTTTTGAAGGAGTGA+AGG - tig0037058:20989-21008 None:intergenic 35.0%
!!! GTTCTTGCTTTTTCTCACAA+AGG + tig0037058:21004-21023 Msa1456230:CDS 35.0%
!!! TTTTCAGGTTCAAAACATGG+TGG + tig0037058:21113-21132 Msa1456230:CDS 35.0%
! ACAGCATAGGATTTGATTTC+AGG - tig0037058:21208-21227 None:intergenic 35.0%
TATAGGAATGATCACAGCAT+AGG - tig0037058:21221-21240 None:intergenic 35.0%
GTCATGATTTATGCTGAAAG+TGG + tig0037058:21289-21308 Msa1456230:CDS 35.0%
GCCTCTTTCATCAAATCATA+AGG - tig0037058:21376-21395 None:intergenic 35.0%
!! AATCCTGTTGGTGTTTTTCA+TGG + tig0037058:21511-21530 Msa1456230:CDS 35.0%
! TCATCAATGATAACGAACCT+TGG - tig0037058:21568-21587 None:intergenic 35.0%
AGGTTCGTTATCATTGATGA+TGG + tig0037058:21568-21587 Msa1456230:CDS 35.0%
!! TCGTTATCATTGATGATGGA+TGG + tig0037058:21572-21591 Msa1456230:CDS 35.0%
GATGCAAAGAATCTTGTTCT+TGG + tig0037058:21631-21650 Msa1456230:CDS 35.0%
GGATTAAAAGGAGGTGAATT+AGG - tig0037058:21739-21758 None:intergenic 35.0%
ATGCTCATGTTCAATTCCTT+TGG - tig0037058:21785-21804 None:intergenic 35.0%
AGGAATTGAACATGAGCATT+TGG + tig0037058:21786-21805 Msa1456230:CDS 35.0%
GGAATTGAACATGAGCATTT+GGG + tig0037058:21787-21806 Msa1456230:CDS 35.0%
GAATTGAACATGAGCATTTG+GGG + tig0037058:21788-21807 Msa1456230:CDS 35.0%
! GAAATTGATGATCTCTTTGG+TGG + tig0037058:21889-21908 Msa1456230:CDS 35.0%
GATTTGAGGACTAAGTTCAA+AGG + tig0037058:21997-22016 Msa1456230:CDS 35.0%
GTTTGGATGATGTTTATGTG+TGG + tig0037058:22019-22038 Msa1456230:CDS 35.0%
! AAGTTTGCAAGGGACAATTT+TGG - tig0037058:22100-22119 None:intergenic 35.0%
GCTGTGGTTAAAATTGTTGA+AGG + tig0037058:22153-22172 Msa1456230:CDS 35.0%
! GACTATTGTAGTGTTTGTTG+TGG + tig0037058:22606-22625 Msa1456230:intron 35.0%
TTGCCAAAGCTTACTATGAA+GGG + tig0037058:22703-22722 Msa1456230:CDS 35.0%
TAACCCTTCATAGTAAGCTT+TGG - tig0037058:22709-22728 None:intergenic 35.0%
! AAGTTGTGATTTTTGTGTGC+AGG + tig0037058:22927-22946 Msa1456230:intron 35.0%
! AGTTGTGATTTTTGTGTGCA+GGG + tig0037058:22928-22947 Msa1456230:intron 35.0%
!!! TTTTGGTTCCAAGATCCTAA+TGG + tig0037058:22957-22976 Msa1456230:CDS 35.0%
TCCCATCCATAAGCTATTAT+AGG - tig0037058:23033-23052 None:intergenic 35.0%
!!! ATTTTGGGATTGTACCATCA+GGG - tig0037058:23205-23224 None:intergenic 35.0%
! TAGCTGCTAGTATTGAAGTT+TGG - tig0037058:23346-23365 None:intergenic 35.0%
TGCATGTAACTGAAGTTGAA+TGG + tig0037058:23716-23735 Msa1456230:CDS 35.0%
GCATGTAACTGAAGTTGAAT+GGG + tig0037058:23717-23736 Msa1456230:CDS 35.0%
!! GAAGAAAGAAGCATCTGATT+TGG + tig0037058:23744-23763 Msa1456230:CDS 35.0%
TTGTATAGCTCAAATGTGGA+TGG - tig0037058:23862-23881 None:intergenic 35.0%
TTTGTTCCAGTCACAAAGTT+TGG + tig0037058:23883-23902 Msa1456230:CDS 35.0%
TTGACCAACATGTTCAATAG+TGG + tig0037058:23934-23953 Msa1456230:CDS 35.0%
TGGTGGAACAATTCTTGATT+TGG + tig0037058:23954-23973 Msa1456230:CDS 35.0%
TGAAAGTGGTGCAAAGATTA+AGG + tig0037058:23984-24003 Msa1456230:CDS 35.0%
GGTGCAAAGATTAAGGTTAA+AGG + tig0037058:23991-24010 Msa1456230:CDS 35.0%
GCAAAGATTAAGGTTAAAGG+TGG + tig0037058:23994-24013 Msa1456230:CDS 35.0%
AAGATTAAGGTTAAAGGTGG+CGG + tig0037058:23997-24016 Msa1456230:CDS 35.0%
!! TCAATTGAATGGTTCTGAAG+TGG + tig0037058:24059-24078 Msa1456230:CDS 35.0%
! AATTGACTCTCAATGTTCCT+TGG + tig0037058:24106-24125 Msa1456230:CDS 35.0%
AGATCAACGGTTGTGGAATT+CGG - tig0037058:20827-20846 None:intergenic 40.0%
TTTGATGAGATCAACGGTTG+TGG - tig0037058:20834-20853 None:intergenic 40.0%
TCAGGAACATCATGGAACAA+AGG - tig0037058:20908-20927 None:intergenic 40.0%
!! TTTTTGAAGGAGTGAAGGTG+GGG - tig0037058:20984-21003 None:intergenic 40.0%
!! CTTTTTGAAGGAGTGAAGGT+GGG - tig0037058:20985-21004 None:intergenic 40.0%
!! ACTTTTTGAAGGAGTGAAGG+TGG - tig0037058:20986-21005 None:intergenic 40.0%
!!! CTTGCTTTTTCTCACAAAGG+AGG + tig0037058:21007-21026 Msa1456230:CDS 40.0%
TCTCACAAAGGAGGTTTCTT+TGG + tig0037058:21016-21035 Msa1456230:CDS 40.0%
TCTATCAGATGGGGTTTCAT+TGG - tig0037058:21047-21066 None:intergenic 40.0%
AAACATGGTGGTCTACTCAA+TGG + tig0037058:21125-21144 Msa1456230:CDS 40.0%
AACATGGTGGTCTACTCAAT+GGG + tig0037058:21126-21145 Msa1456230:CDS 40.0%
!! ACTCAATGGGTTGGTAAATC+TGG + tig0037058:21139-21158 Msa1456230:CDS 40.0%
!!! TTTAGGTCTGCACTTTTTCC+AGG + tig0037058:21253-21272 Msa1456230:CDS 40.0%
ATGACATGATCATCAGAACC+TGG - tig0037058:21274-21293 None:intergenic 40.0%
TGCTGAAAGTGGTTCAACAA+AGG + tig0037058:21300-21319 Msa1456230:CDS 40.0%
! GGGTTCATCTCAACACTTTT+AGG + tig0037058:21410-21429 Msa1456230:CDS 40.0%
AGACCATGAAAAACACCAAC+AGG - tig0037058:21517-21536 None:intergenic 40.0%
!! TGGTGTTTTTCATGGTCTTG+AGG + tig0037058:21519-21538 Msa1456230:CDS 40.0%
!! GGTGTTTTTCATGGTCTTGA+GGG + tig0037058:21520-21539 Msa1456230:CDS 40.0%
!! GGTCTTGAGGGTTTTTCAAA+AGG + tig0037058:21532-21551 Msa1456230:CDS 40.0%
!! CTTGAGGGTTTTTCAAAAGG+CGG + tig0037058:21535-21554 Msa1456230:CDS 40.0%
! TGGATGGCAAAGCATTAGTT+TGG + tig0037058:21588-21607 Msa1456230:CDS 40.0%
! TGGCAAAGCATTAGTTTGGA+TGG + tig0037058:21592-21611 Msa1456230:CDS 40.0%
GCAAAGAATCTTGTTCTTGG+TGG + tig0037058:21634-21653 Msa1456230:CDS 40.0%
AAGCTTGTGTTGCAAGGAAA+AGG + tig0037058:21948-21967 Msa1456230:CDS 40.0%
TGTTGCAAGGAAAAGGAGTA+TGG + tig0037058:21955-21974 Msa1456230:CDS 40.0%
! GGAAAAGGAGTATGGTTTGA+AGG + tig0037058:21963-21982 Msa1456230:CDS 40.0%
ATGGTTTGAAGGCTTTCACA+AGG + tig0037058:21974-21993 Msa1456230:CDS 40.0%
TGGTTTGAAGGCTTTCACAA+GGG + tig0037058:21975-21994 Msa1456230:CDS 40.0%
GAGGACTAAGTTCAAAGGTT+TGG + tig0037058:22002-22021 Msa1456230:CDS 40.0%
TATGTGTGGCATGCATTATG+TGG + tig0037058:22033-22052 Msa1456230:CDS 40.0%
GTATTAAGATGTGTGGTTCC+TGG - tig0037058:22078-22097 None:intergenic 40.0%
GATCTTCCATTGTTCCATCA+AGG - tig0037058:22131-22150 None:intergenic 40.0%
AACAATGGAAGATCTTGCTG+TGG + tig0037058:22137-22156 Msa1456230:CDS 40.0%
! TTCAGCAAGATAAGAGTGCA+TGG - tig0037058:22226-22245 None:intergenic 40.0%
CACTCTTATCTTGCTGAATC+TGG + tig0037058:22228-22247 Msa1456230:CDS 40.0%
! CTTCATAGTAAGCTTTGGCA+AGG - tig0037058:22704-22723 None:intergenic 40.0%
CTTGCCAAAGCTTACTATGA+AGG + tig0037058:22702-22721 Msa1456230:CDS 40.0%
! TGGAAACTTGCTTTGTTCCA+AGG - tig0037058:22806-22825 None:intergenic 40.0%
TGGAACAAAGCAAGTTTCCA+TGG + tig0037058:22806-22825 Msa1456230:CDS 40.0%
GGAACAAAGCAAGTTTCCAT+GGG + tig0037058:22807-22826 Msa1456230:CDS 40.0%
! GTTGTGATTTTTGTGTGCAG+GGG + tig0037058:22929-22948 Msa1456230:intron 40.0%
TTGGATCACCATTAGGATCT+TGG - tig0037058:22968-22987 None:intergenic 40.0%
AGATCCTAATGGTGATCCAA+TGG + tig0037058:22968-22987 Msa1456230:CDS 40.0%
GATCCTAATGGTGATCCAAT+GGG + tig0037058:22969-22988 Msa1456230:CDS 40.0%
TGTAACCAAAAAGCTCCCAT+TGG - tig0037058:22987-23006 None:intergenic 40.0%
!!! ATGGGAGCTTTTTGGTTACA+AGG + tig0037058:22987-23006 Msa1456230:CDS 40.0%
ACAGATGATTCGACCTGATT+GGG + tig0037058:23052-23071 Msa1456230:CDS 40.0%
AAGAAACTTGTGTTCCCTGA+TGG + tig0037058:23188-23207 Msa1456230:CDS 40.0%
!!! CATTTTGGGATTGTACCATC+AGG - tig0037058:23206-23225 None:intergenic 40.0%
AGACAATCTCTAGTAGGAAG+AGG - tig0037058:23239-23258 None:intergenic 40.0%
AAACAGTATGGAGGAGTGAT+TGG + tig0037058:23604-23623 Msa1456230:intron 40.0%
! ATTGGTGCTTTCAACTGTCA+AGG + tig0037058:23622-23641 Msa1456230:CDS 40.0%
! TTGGTGCTTTCAACTGTCAA+GGG + tig0037058:23623-23642 Msa1456230:CDS 40.0%
! ACCCAAAAGAGCACAAGTTT+AGG + tig0037058:23656-23675 Msa1456230:CDS 40.0%
! CCCTAAACTTGTGCTCTTTT+GGG - tig0037058:23660-23679 None:intergenic 40.0%
! CCCAAAAGAGCACAAGTTTA+GGG + tig0037058:23657-23676 Msa1456230:CDS 40.0%
! CCAAAAGAGCACAAGTTTAG+GGG + tig0037058:23658-23677 Msa1456230:CDS 40.0%
! CAAAAGAGCACAAGTTTAGG+GGG + tig0037058:23659-23678 Msa1456230:CDS 40.0%
!! CTATTGGCTTGTAGCATTCA+GGG - tig0037058:23687-23706 None:intergenic 40.0%
!! ACTATTGGCTTGTAGCATTC+AGG - tig0037058:23688-23707 None:intergenic 40.0%
GAATGCTACAAGCCAATAGT+TGG + tig0037058:23688-23707 Msa1456230:CDS 40.0%
ACATGCACAGTACCAACTAT+TGG - tig0037058:23703-23722 None:intergenic 40.0%
!! AGAAGCATCTGATTTGGGTA+AGG + tig0037058:23750-23769 Msa1456230:CDS 40.0%
AACATGTTGGTCAACCCAAT+TGG - tig0037058:23928-23947 None:intergenic 40.0%
ACCAACATGTTCAATAGTGG+TGG + tig0037058:23937-23956 Msa1456230:CDS 40.0%
TCCACCACTATTGAACATGT+TGG - tig0037058:23941-23960 None:intergenic 40.0%
GCGATTCACTTGAATAAGCA+AGG - tig0037058:24029-24048 None:intergenic 40.0%
CAATGTTCCTTGGATTGATG+AGG + tig0037058:24116-24135 Msa1456230:CDS 40.0%
!!! TTTTTTCCCCTCCCTTGTTT+TGG + tig0037058:24279-24298 Msa1456230:three_prime_UTR 40.0%
ATATGGTCCAAAACAAGGGA+GGG - tig0037058:24289-24308 None:intergenic 40.0%
AATATGGTCCAAAACAAGGG+AGG - tig0037058:24290-24309 None:intergenic 40.0%
GGCAATATGGTCCAAAACAA+GGG - tig0037058:24293-24312 None:intergenic 40.0%
AGGCAATATGGTCCAAAACA+AGG - tig0037058:24294-24313 None:intergenic 40.0%
! GAGGGAAAGTTTAAGGTGAG+AGG + tig0037058:20878-20897 Msa1456230:CDS 45.0%
!! CTTGGTGGTGAACAAATGAC+TGG + tig0037058:21649-21668 Msa1456230:CDS 45.0%
GTGGTGAACAAATGACTGGA+AGG + tig0037058:21653-21672 Msa1456230:CDS 45.0%
AAATGACTGGAAGGCTTCGT+AGG + tig0037058:21662-21681 Msa1456230:CDS 45.0%
ATGTGGAAGCTTGTGTTGCA+AGG + tig0037058:21942-21961 Msa1456230:CDS 45.0%
AGGCTTTCACAAGGGATTTG+AGG + tig0037058:21983-22002 Msa1456230:CDS 45.0%
GCATGCATTATGTGGTGCTT+GGG + tig0037058:22041-22060 Msa1456230:CDS 45.0%
CATGCATTATGTGGTGCTTG+GGG + tig0037058:22042-22061 Msa1456230:CDS 45.0%
CAAGTTTCCATGGGAAGAGT+TGG + tig0037058:22816-22835 Msa1456230:CDS 45.0%
TTGCTTACCAACTCTTCCCA+TGG - tig0037058:22826-22845 None:intergenic 45.0%
! GTGATCCAATGGGAGCTTTT+TGG + tig0037058:22979-22998 Msa1456230:CDS 45.0%
GACAGATGATTCGACCTGAT+TGG + tig0037058:23051-23070 Msa1456230:CDS 45.0%
GACTGAAACATGTCCCAATC+AGG - tig0037058:23068-23087 None:intergenic 45.0%
TGGTGCTTTCAACTGTCAAG+GGG + tig0037058:23624-23643 Msa1456230:CDS 45.0%
! CCCCTAAACTTGTGCTCTTT+TGG - tig0037058:23661-23680 None:intergenic 45.0%
GTTCCAGTCACAAAGTTTGG+TGG + tig0037058:23886-23905 Msa1456230:CDS 45.0%
TTGCCACCAAACTTTGTGAC+TGG - tig0037058:23892-23911 None:intergenic 45.0%
TATGGTCCAAAACAAGGGAG+GGG - tig0037058:24288-24307 None:intergenic 45.0%
TCAACGGTTGTGGAATTCGG+TGG - tig0037058:20824-20843 None:intergenic 50.0%
! GGTGGGGCATTTGAATCAGA+GGG - tig0037058:20968-20987 None:intergenic 50.0%
! AGGTGGGGCATTTGAATCAG+AGG - tig0037058:20969-20988 None:intergenic 50.0%
TGGTGGTCTACTCAATGGGT+TGG + tig0037058:21130-21149 Msa1456230:CDS 50.0%
!! GGATGGTGCTGATCATAACG+AGG + tig0037058:21609-21628 Msa1456230:CDS 50.0%
GGCATGCATTATGTGGTGCT+TGG + tig0037058:22040-22059 Msa1456230:CDS 50.0%
!! AAACTTTCGCCTGGCCTTGA+TGG + tig0037058:22114-22133 Msa1456230:CDS 50.0%
TCCATTGTTCCATCAAGGCC+AGG - tig0037058:22126-22145 None:intergenic 50.0%
TTGCTGAATCTGGCGTCACA+GGG + tig0037058:22238-22257 Msa1456230:CDS 50.0%
GCTCCCATTGGATCACCATT+AGG - tig0037058:22975-22994 None:intergenic 50.0%
! GCTGGCTCAAGAGCTATTTG+TGG + tig0037058:23113-23132 Msa1456230:CDS 50.0%
GGCTCAAGAGCTATTTGTGG+TGG + tig0037058:23116-23135 Msa1456230:CDS 50.0%
CTTTCAACTGTCAAGGGGCA+GGG + tig0037058:23629-23648 Msa1456230:CDS 50.0%
! GGGTAAGGCAGAAGAGTATG+TGG + tig0037058:23765-23784 Msa1456230:CDS 50.0%
!! GTTCTGAAGTGGCGTTTGAG+TGG + tig0037058:24070-24089 Msa1456230:CDS 50.0%
! GGCTGCTGGTGTTTCTGATT+TGG + tig0037058:24137-24156 Msa1456230:CDS 50.0%
! GTGGAATTCGGTGGAGCCAT+GGG - tig0037058:20815-20834 None:intergenic 55.0%
! TGTGGAATTCGGTGGAGCCA+TGG - tig0037058:20816-20835 None:intergenic 55.0%
! CAAAAGGCGGCGTTGAACCA+AGG + tig0037058:21548-21567 Msa1456230:CDS 55.0%
ACTGGAAGGCTTCGTAGGCT+TGG + tig0037058:21667-21686 Msa1456230:CDS 55.0%
!! AGGCTTCGTAGGCTTGGTGA+AGG + tig0037058:21673-21692 Msa1456230:CDS 55.0%
GCATTATGTGGTGCTTGGGG+TGG + tig0037058:22045-22064 Msa1456230:CDS 55.0%
GTCCCTTGCAAACTTTCGCC+TGG + tig0037058:22105-22124 Msa1456230:CDS 55.0%
GGCCAGGCGAAAGTTTGCAA+GGG - tig0037058:22110-22129 None:intergenic 55.0%
AGGCCAGGCGAAAGTTTGCA+AGG - tig0037058:22111-22130 None:intergenic 55.0%
!! GCCTGGCCTTGATGGAACAA+TGG + tig0037058:22122-22141 Msa1456230:CDS 55.0%
CTTGCTGAATCTGGCGTCAC+AGG + tig0037058:22237-22256 Msa1456230:CDS 55.0%
TGCTGAATCTGGCGTCACAG+GGG + tig0037058:22239-22258 Msa1456230:CDS 55.0%
! TGTGTGCAGGGGACGACTTT+TGG + tig0037058:22940-22959 Msa1456230:intron 55.0%
GCTTTCAACTGTCAAGGGGC+AGG + tig0037058:23628-23647 Msa1456230:CDS 55.0%
TGAAGTGGCGTTTGAGTGGC+TGG + tig0037058:24074-24093 Msa1456230:CDS 55.0%
GAAGTGGCGTTTGAGTGGCT+GGG + tig0037058:24075-24094 Msa1456230:CDS 55.0%
CCAGCAGCCTCATCAATCCA+AGG - tig0037058:24126-24145 None:intergenic 55.0%
CCTTGGATTGATGAGGCTGC+TGG + tig0037058:24123-24142 Msa1456230:CDS 55.0%
TCAACTGTCAAGGGGCAGGG+TGG + tig0037058:23632-23651 Msa1456230:CDS 60.0%
CAACTGTCAAGGGGCAGGGT+GGG + tig0037058:23633-23652 Msa1456230:CDS 60.0%
GCGTTTGAGTGGCTGGGTGA+TGG + tig0037058:24081-24100 Msa1456230:CDS 60.0%
GTGGTGCTTGGGGTGGTGTG+AGG + tig0037058:22052-22071 Msa1456230:CDS 65.0%
GCTTGGGGTGGTGTGAGGCC+AGG + tig0037058:22057-22076 Msa1456230:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0037058 gene 20773 24342 20773 ID=Msa1456230;Name=Msa1456230
tig0037058 mRNA 20773 24342 20773 ID=Msa1456230-mRNA-1;Parent=Msa1456230;Name=Msa1456230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=42|1|1|1|1|1|4|169|858
tig0037058 exon 20773 22281 20773 ID=Msa1456230-mRNA-1:exon:20634;Parent=Msa1456230-mRNA-1
tig0037058 exon 22660 22837 22660 ID=Msa1456230-mRNA-1:exon:20635;Parent=Msa1456230-mRNA-1
tig0037058 exon 22949 23316 22949 ID=Msa1456230-mRNA-1:exon:20636;Parent=Msa1456230-mRNA-1
tig0037058 exon 23610 24342 23610 ID=Msa1456230-mRNA-1:exon:20637;Parent=Msa1456230-mRNA-1
tig0037058 five_prime_UTR 20773 20814 20773 ID=Msa1456230-mRNA-1:five_prime_utr;Parent=Msa1456230-mRNA-1
tig0037058 CDS 20815 22281 20815 ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058 CDS 22660 22837 22660 ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058 CDS 22949 23316 22949 ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058 CDS 23610 24173 23610 ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058 three_prime_UTR 24174 24342 24174 ID=Msa1456230-mRNA-1:three_prime_utr;Parent=Msa1456230-mRNA-1
Gene Sequence

>Msa1456230

ATGGCTCCACCGAATTCCACAACCGTTGATCTCATCAAAACTGAGTCATTATTTGATTTATCTGAGGGAAAGTTTAAGGTGAGAGGTGTTCCTTTGTTCCATGATGTTCCTGAGAATGTTTCTTTCAGTTCATTCTCTTCTATATGCAAACCCTCTGATTCAAATGCCCCACCTTCACTCCTTCAAAAAGTTCTTGCTTTTTCTCACAAAGGAGGTTTCTTTGGATTCTCCAATGAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGACTTTGTCAGTATTTTCAGGTTCAAAACATGGTGGTCTACTCAATGGGTTGGTAAATCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTTGATATTCCTGAAATCAAATCCTATGCTGTGATCATTCCTATAATTGAAAAAGGTTTTAGGTCTGCACTTTTTCCAGGTTCTGATGATCATGTCATGATTTATGCTGAAAGTGGTTCAACAAAGGTGAAAGAATCATGTTTCAATGCTATTGCTTATGTTCATTTTTCTGAAAATCCTTATGATTTGATGAAAGAGGCTTATAGTGTTATAAGGGTTCATCTCAACACTTTTAGGTTATTGGAAGAGAAAACACTACCAAATTTAGTTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTGTTGGTGTTTTTCATGGTCTTGAGGGTTTTTCAAAAGGCGGCGTTGAACCAAGGTTCGTTATCATTGATGATGGATGGCAAAGCATTAGTTTGGATGGTGCTGATCATAACGAGGATGCAAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGAAGGCTTCGTAGGCTTGGTGAAGGAGACAAGTTCAAAAAATATGAAAGTGGATTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACGATTAAGGAGTTGATTTCCAAAGGAATTGAACATGAGCATTTGGGGAAGCAAAGAGATCAAGCAATTTTATCTAAGAGTTCTGATTTGGCTGAGATTGAGTCAAAGATCAAGAAACTGATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTAGTGTTCAAAAAAGTGAATGTGGAAGCTTGTGTTGCAAGGAAAAGGAGTATGGTTTGAAGGCTTTCACAAGGGATTTGAGGACTAAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCATTATGTGGTGCTTGGGGTGGTGTGAGGCCAGGAACCACACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCGCCTGGCCTTGATGGAACAATGGAAGATCTTGCTGTGGTTAAAATTGTTGAAGGTTCAATTGGACTAGTTGATCCTGATCAAGCCAATGATTTTTATGATTCCATGCACTCTTATCTTGCTGAATCTGGCGTCACAGGGGTCAAAGTTGATGTCATTCATTGTCTTGAATATGTGTGTGATAAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTAACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGATTTTTTCTTCCTTGGAACAAAGCAAGTTTCCATGGGAAGAGTTGGGGACGACTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAGCTTTTTGGTTACAAGGTGTGCACATGATTCATTGTTCCTATAATAGCTTATGGATGGGACAGATGATTCGACCTGATTGGGACATGTTTCAGTCAGACCATATTTGTGCTAAATTTCATGCTGGCTCAAGAGCTATTTGTGGTGGTCCAATTTATTTGAGTGATAATGTTGGCTCTCACGACTTTGATCTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAATGCATACATTTTCCTCTTCCTACTAGAGATTGTCTTTTCAAAAACCCTCTATTTGACAAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCAAAAGAGCACAAGTTTAGGGGGTTCCCTGAATGCTACAAGCCAATAGTTGGTACTGTGCATGTAACTGAAGTTGAATGGGATCAGAAGAAAGAAGCATCTGATTTGGGTAAGGCAGAAGAGTATGTGGTCTACTTCAATCAAGCTGAAGAACTTTCTTTGATGACTCCAAAATCTGAACCAATTCAATTTATCATTCAACCATCCACATTTGAGCTATACAATTTTGTTCCAGTCACAAAGTTTGGTGGCAACATCAAATTTGCACCAATTGGGTTGACCAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCAAAGATTAAGGTTAAAGGTGGCGGAAATTTCCTTGCTTATTCAAGTGAATCGCCAAAGAAGTTTCAATTGAATGGTTCTGAAGTGGCGTTTGAGTGGCTGGGTGATGGAAAATTGACTCTCAATGTTCCTTGGATTGATGAGGCTGCTGGTGTTTCTGATTTGGCAATTTTTTTCTAG

Protein sequence

>Msa1456230

MAPPNSTTVDLIKTESLFDLSEGKFKVRGVPLFHDVPENVSFSSFSSICKPSDSNAPPSLLQKVLAFSHKGGFFGFSNETPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGKSGSDLQMETQWILFDIPEIKSYAVIIPIIEKGFRSALFPGSDDHVMIYAESGSTKVKESCFNAIAYVHFSENPYDLMKEAYSVIRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFYLTVNPVGVFHGLEGFSKGGVEPRFVIIDDGWQSISLDGADHNEDAKNLVLGGEQMTGRLRRLGEGDKFKKYESGLLLGPNSPPFNPKTIKELISKGIEHEHLGKQRDQAILSKSSDLAEIESKIKKLIKEIDDLFGGEQSSSVQKSECGSLCCKEKEYGLKAFTRDLRTKFKGLDDVYVWHALCGAWGGVRPGTTHLNTKIVPCKLSPGLDGTMEDLAVVKIVEGSIGLVDPDQANDFYDSMHSYLAESGVTGVKVDVIHCLEYVCDKYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWMGQMIRPDWDMFQSDHICAKFHAGSRAICGGPIYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDKTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPIVGTVHVTEVEWDQKKEASDLGKAEEYVVYFNQAEELSLMTPKSEPIQFIIQPSTFELYNFVPVTKFGGNIKFAPIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKLTLNVPWIDEAAGVSDLAIFF*