AlfalfaGEDB | Msa1456230

M. sativa cultivar zhongmu-4 / Msa1456230

KEGG: K06611
GO: GO:0003674 GO:0003824 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009628 GO:0016740 GO:0016757 GO:0016758 GO:0047268 GO:0050896 GO:0080167
PFAM: PF05691.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456230	XP_013450269.1	93.132	859	58	1	1	858	1	859	0.0	1655

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456230	sp\|Q93XK2\|STSYN_PEA	85.681	859	116	2	1	858	1	853	0.0	1524

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456230	A0A072U3J2	93.132	859	58	1	1	858	1	859	0.0	1655

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011930	Msa1456230	0.817737	2.824120e-52	-8.615850e-47
Msa0015390	Msa1456230	0.800092	1.695127e-48	-8.615850e-47
Msa0017320	Msa1456230	0.814534	1.467429e-51	-8.615850e-47
Msa0021210	Msa1456230	0.834030	3.794303e-56	-8.615850e-47
Msa0026430	Msa1456230	0.819181	1.328777e-52	-8.615850e-47
Msa0028620	Msa1456230	0.818277	2.131408e-52	-8.615850e-47
Msa0035120	Msa1456230	0.800691	1.279897e-48	-8.615850e-47
Msa0041690	Msa1456230	0.829622	4.642949e-55	-8.615850e-47
Msa0043530	Msa1456230	0.809952	1.466921e-50	-8.615850e-47
Msa0045550	Msa1456230	0.828875	7.047492e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456230	MtrunA17_Chr7g0267991	93.132	859	58	1	1	858	1	859	0.0	1655
Msa1456230	MtrunA17_Chr8g0380141	88.162	718	77	2	1	718	1	710	0.0	1327
Msa1456230	MtrunA17_Chr1g0201161	83.505	679	100	2	1	675	1	671	0.0	1178
Msa1456230	MtrunA17_Chr1g0201161	86.243	189	26	0	670	858	735	923	5.45e-103	340
Msa1456230	MtrunA17_Chr7g0270181	91.576	368	24	1	488	855	1	361	0.0	697
Msa1456230	MtrunA17_Chr3g0117141	42.093	860	395	13	1	844	1	773	0.0	669
Msa1456230	MtrunA17_Chr6g0449521	52.017	471	216	6	382	844	306	774	8.22e-166	501
Msa1456230	MtrunA17_Chr6g0449521	40.597	335	154	6	1	307	1	318	3.13e-66	236
Msa1456230	MtrunA17_Chr4g0058701	51.168	471	219	7	383	844	297	765	4.12e-163	494
Msa1456230	MtrunA17_Chr4g0058701	43.396	318	159	7	1	307	1	308	1.77e-68	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456230	AT4G01970.2	57.512	852	342	12	18	858	81	923	0.0	1011
Msa1456230	AT4G01970.1	57.512	852	342	12	18	858	34	876	0.0	1011
Msa1456230	AT5G40390.1	52.484	463	216	4	384	844	310	770	2.15e-172	518
Msa1456230	AT5G40390.1	42.761	297	146	4	18	302	22	306	1.66e-64	231
Msa1456230	AT3G57520.1	34.496	516	290	10	363	847	264	762	5.06e-93	310
Msa1456230	AT3G57520.1	36.667	240	135	3	71	299	42	275	1.25e-41	164
Msa1456230	AT5G20250.3	38.479	447	261	6	388	832	287	721	1.91e-92	308
Msa1456230	AT5G20250.3	34.576	295	155	4	20	299	9	280	1.59e-43	169
Msa1456230	AT5G20250.1	38.479	447	261	6	388	832	287	721	1.91e-92	308
Msa1456230	AT5G20250.1	34.576	295	155	4	20	299	9	280	1.59e-43	169

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Find 204 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTATAGCTCAAATG+TGG	0.591781	tig0037058:-23863	None:intergenic
AAAATTGTTGAAGGTTCAAT+TGG	0.374085	tig0037058:+22162	Msa1456230:CDS
AAACAACTGTTCTCAAAATT+TGG	0.128848	tig0037058:+23282	Msa1456230:CDS
AAACAGTATGGAGGAGTGAT+TGG	0.468721	tig0037058:+23604	Msa1456230:intron
AAACATGGTGGTCTACTCAA+TGG	0.471026	tig0037058:+21125	Msa1456230:CDS
AAACATTCTCAGGAACATCA+TGG	0.565376	tig0037058:-20913	None:intergenic
AAACTTTCGCCTGGCCTTGA+TGG	0.362411	tig0037058:+22114	Msa1456230:CDS
AAAGAAATTGATGATCTCTT+TGG	0.331904	tig0037058:+21886	Msa1456230:CDS
AAATGACTGGAAGGCTTCGT+AGG	0.575794	tig0037058:+21662	Msa1456230:CDS
AACAATGGAAGATCTTGCTG+TGG	0.739747	tig0037058:+22137	Msa1456230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCATGGGAAGAAAAAAAAAA+CGG	-	tig0037058:20799-20818	None:intergenic	30.0%
TTTATCTGAGGGAAAGTTTA+AGG	+	tig0037058:20871-20890	Msa1456230:CDS	30.0%
ATTCATCAATCTATCAGATG+GGG	-	tig0037058:21056-21075	None:intergenic	30.0%
GAATTCATCAATCTATCAGA+TGG	-	tig0037058:21058-21077	None:intergenic	30.0%
AATTCATTGGGTAGTTTCAA+TGG	+	tig0037058:21073-21092	Msa1456230:CDS	30.0%
TCCTTATGATTTGATGAAAG+AGG	+	tig0037058:21372-21391	Msa1456230:CDS	30.0%
AAGAGGCTTATAGTGTTATA+AGG	+	tig0037058:21389-21408	Msa1456230:CDS	30.0%
AGAGGCTTATAGTGTTATAA+GGG	+	tig0037058:21390-21409	Msa1456230:CDS	30.0%
AGTGTTCAAAAAAGTGAATG+TGG	+	tig0037058:21925-21944	Msa1456230:CDS	30.0%
TATGTGTGTGATAAATATGG+AGG	+	tig0037058:22669-22688	Msa1456230:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0037058	gene	20773	24342	20773	ID=Msa1456230;Name=Msa1456230
tig0037058	mRNA	20773	24342	20773	ID=Msa1456230-mRNA-1;Parent=Msa1456230;Name=Msa1456230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=42\|1\|1\|1\|1\|1\|4\|169\|858
tig0037058	exon	20773	22281	20773	ID=Msa1456230-mRNA-1:exon:20634;Parent=Msa1456230-mRNA-1
tig0037058	exon	22660	22837	22660	ID=Msa1456230-mRNA-1:exon:20635;Parent=Msa1456230-mRNA-1
tig0037058	exon	22949	23316	22949	ID=Msa1456230-mRNA-1:exon:20636;Parent=Msa1456230-mRNA-1
tig0037058	exon	23610	24342	23610	ID=Msa1456230-mRNA-1:exon:20637;Parent=Msa1456230-mRNA-1
tig0037058	five_prime_UTR	20773	20814	20773	ID=Msa1456230-mRNA-1:five_prime_utr;Parent=Msa1456230-mRNA-1
tig0037058	CDS	20815	22281	20815	ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058	CDS	22660	22837	22660	ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058	CDS	22949	23316	22949	ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058	CDS	23610	24173	23610	ID=Msa1456230-mRNA-1:cds;Parent=Msa1456230-mRNA-1
tig0037058	three_prime_UTR	24174	24342	24174	ID=Msa1456230-mRNA-1:three_prime_utr;Parent=Msa1456230-mRNA-1

Gene Sequence

>Msa1456230

ATGGCTCCACCGAATTCCACAACCGTTGATCTCATCAAAACTGAGTCATTATTTGATTTATCTGAGGGAAAGTTTAAGGTGAGAGGTGTTCCTTTGTTCCATGATGTTCCTGAGAATGTTTCTTTCAGTTCATTCTCTTCTATATGCAAACCCTCTGATTCAAATGCCCCACCTTCACTCCTTCAAAAAGTTCTTGCTTTTTCTCACAAAGGAGGTTTCTTTGGATTCTCCAATGAAACCCCATCTGATAGATTGATGAATTCATTGGGTAGTTTCAATGGAAAAGACTTTGTCAGTATTTTCAGGTTCAAAACATGGTGGTCTACTCAATGGGTTGGTAAATCTGGTTCTGATTTACAAATGGAAACTCAATGGATTCTTTTTGATATTCCTGAAATCAAATCCTATGCTGTGATCATTCCTATAATTGAAAAAGGTTTTAGGTCTGCACTTTTTCCAGGTTCTGATGATCATGTCATGATTTATGCTGAAAGTGGTTCAACAAAGGTGAAAGAATCATGTTTCAATGCTATTGCTTATGTTCATTTTTCTGAAAATCCTTATGATTTGATGAAAGAGGCTTATAGTGTTATAAGGGTTCATCTCAACACTTTTAGGTTATTGGAAGAGAAAACACTACCAAATTTAGTTGATAAATTTGGTTGGTGTACTTGGGATGCTTTCTATTTAACTGTTAATCCTGTTGGTGTTTTTCATGGTCTTGAGGGTTTTTCAAAAGGCGGCGTTGAACCAAGGTTCGTTATCATTGATGATGGATGGCAAAGCATTAGTTTGGATGGTGCTGATCATAACGAGGATGCAAAGAATCTTGTTCTTGGTGGTGAACAAATGACTGGAAGGCTTCGTAGGCTTGGTGAAGGAGACAAGTTCAAAAAATATGAAAGTGGATTGTTATTAGGTCCTAATTCACCTCCTTTTAATCCAAAAACGATTAAGGAGTTGATTTCCAAAGGAATTGAACATGAGCATTTGGGGAAGCAAAGAGATCAAGCAATTTTATCTAAGAGTTCTGATTTGGCTGAGATTGAGTCAAAGATCAAGAAACTGATAAAAGAAATTGATGATCTCTTTGGTGGAGAACAAAGTAGTAGTGTTCAAAAAAGTGAATGTGGAAGCTTGTGTTGCAAGGAAAAGGAGTATGGTTTGAAGGCTTTCACAAGGGATTTGAGGACTAAGTTCAAAGGTTTGGATGATGTTTATGTGTGGCATGCATTATGTGGTGCTTGGGGTGGTGTGAGGCCAGGAACCACACATCTTAATACCAAAATTGTCCCTTGCAAACTTTCGCCTGGCCTTGATGGAACAATGGAAGATCTTGCTGTGGTTAAAATTGTTGAAGGTTCAATTGGACTAGTTGATCCTGATCAAGCCAATGATTTTTATGATTCCATGCACTCTTATCTTGCTGAATCTGGCGTCACAGGGGTCAAAGTTGATGTCATTCATTGTCTTGAATATGTGTGTGATAAATATGGAGGCAGAGTTGACCTTGCCAAAGCTTACTATGAAGGGTTAACAAAATCCATTGCCAAGAATTTTAATGGAAATGGAATCATTGCTAGCATGCAACAGTGCAATGATTTTTTCTTCCTTGGAACAAAGCAAGTTTCCATGGGAAGAGTTGGGGACGACTTTTGGTTCCAAGATCCTAATGGTGATCCAATGGGAGCTTTTTGGTTACAAGGTGTGCACATGATTCATTGTTCCTATAATAGCTTATGGATGGGACAGATGATTCGACCTGATTGGGACATGTTTCAGTCAGACCATATTTGTGCTAAATTTCATGCTGGCTCAAGAGCTATTTGTGGTGGTCCAATTTATTTGAGTGATAATGTTGGCTCTCACGACTTTGATCTGATTAAGAAACTTGTGTTCCCTGATGGTACAATCCCAAAATGCATACATTTTCCTCTTCCTACTAGAGATTGTCTTTTCAAAAACCCTCTATTTGACAAAACAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCAAAAGAGCACAAGTTTAGGGGGTTCCCTGAATGCTACAAGCCAATAGTTGGTACTGTGCATGTAACTGAAGTTGAATGGGATCAGAAGAAAGAAGCATCTGATTTGGGTAAGGCAGAAGAGTATGTGGTCTACTTCAATCAAGCTGAAGAACTTTCTTTGATGACTCCAAAATCTGAACCAATTCAATTTATCATTCAACCATCCACATTTGAGCTATACAATTTTGTTCCAGTCACAAAGTTTGGTGGCAACATCAAATTTGCACCAATTGGGTTGACCAACATGTTCAATAGTGGTGGAACAATTCTTGATTTGGAATATGTTGAAAGTGGTGCAAAGATTAAGGTTAAAGGTGGCGGAAATTTCCTTGCTTATTCAAGTGAATCGCCAAAGAAGTTTCAATTGAATGGTTCTGAAGTGGCGTTTGAGTGGCTGGGTGATGGAAAATTGACTCTCAATGTTCCTTGGATTGATGAGGCTGCTGGTGTTTCTGATTTGGCAATTTTTTTCTAG

Protein sequence

>Msa1456230

MAPPNSTTVDLIKTESLFDLSEGKFKVRGVPLFHDVPENVSFSSFSSICKPSDSNAPPSLLQKVLAFSHKGGFFGFSNETPSDRLMNSLGSFNGKDFVSIFRFKTWWSTQWVGKSGSDLQMETQWILFDIPEIKSYAVIIPIIEKGFRSALFPGSDDHVMIYAESGSTKVKESCFNAIAYVHFSENPYDLMKEAYSVIRVHLNTFRLLEEKTLPNLVDKFGWCTWDAFYLTVNPVGVFHGLEGFSKGGVEPRFVIIDDGWQSISLDGADHNEDAKNLVLGGEQMTGRLRRLGEGDKFKKYESGLLLGPNSPPFNPKTIKELISKGIEHEHLGKQRDQAILSKSSDLAEIESKIKKLIKEIDDLFGGEQSSSVQKSECGSLCCKEKEYGLKAFTRDLRTKFKGLDDVYVWHALCGAWGGVRPGTTHLNTKIVPCKLSPGLDGTMEDLAVVKIVEGSIGLVDPDQANDFYDSMHSYLAESGVTGVKVDVIHCLEYVCDKYGGRVDLAKAYYEGLTKSIAKNFNGNGIIASMQQCNDFFFLGTKQVSMGRVGDDFWFQDPNGDPMGAFWLQGVHMIHCSYNSLWMGQMIRPDWDMFQSDHICAKFHAGSRAICGGPIYLSDNVGSHDFDLIKKLVFPDGTIPKCIHFPLPTRDCLFKNPLFDKTTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPIVGTVHVTEVEWDQKKEASDLGKAEEYVVYFNQAEELSLMTPKSEPIQFIIQPSTFELYNFVPVTKFGGNIKFAPIGLTNMFNSGGTILDLEYVESGAKIKVKGGGNFLAYSSESPKKFQLNGSEVAFEWLGDGKLTLNVPWIDEAAGVSDLAIFF*