Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298950 | KEH36686.1 | 97.930 | 483 | 10 | 0 | 1 | 483 | 1 | 483 | 0.0 | 977 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298950 | sp|A7XDQ9|B3GTK_ARATH | 59.388 | 490 | 180 | 5 | 1 | 483 | 1 | 478 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298950 | A0A072V4T8 | 97.930 | 483 | 10 | 0 | 1 | 483 | 1 | 483 | 0.0 | 977 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030280 | Msa0298950 | 0.818207 | 2.210497e-52 | -8.615850e-47 |
| Msa0057370 | Msa0298950 | 0.801738 | 7.816467e-49 | -8.615850e-47 |
| Msa0065010 | Msa0298950 | 0.802295 | 6.004705e-49 | -8.615850e-47 |
| Msa0076780 | Msa0298950 | 0.803119 | 4.058974e-49 | -8.615850e-47 |
| Msa0077880 | Msa0298950 | 0.803124 | 4.048519e-49 | -8.615850e-47 |
| Msa0104700 | Msa0298950 | 0.808163 | 3.544174e-50 | -8.615850e-47 |
| Msa0126770 | Msa0298950 | 0.806608 | 7.574278e-50 | -8.615850e-47 |
| Msa0147980 | Msa0298950 | 0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0150990 | Msa0298950 | 0.806967 | 6.360539e-50 | -8.615850e-47 |
| Msa0160670 | Msa0298950 | 0.800912 | 1.153701e-48 | -8.615850e-47 |
| Msa0171850 | Msa0298950 | 0.806789 | 6.934869e-50 | -8.615850e-47 |
| Msa0177200 | Msa0298950 | -0.804206 | 2.414319e-49 | -8.615850e-47 |
| Msa0251230 | Msa0298950 | 0.802439 | 5.607012e-49 | -8.615850e-47 |
| Msa0298920 | Msa0298950 | 0.810532 | 1.099830e-50 | -8.615850e-47 |
| Msa0298950 | Msa0387910 | 0.808419 | 3.126166e-50 | -8.615850e-47 |
| Msa0298950 | Msa0431770 | 0.813349 | 2.677745e-51 | -8.615850e-47 |
| Msa0298950 | Msa0437510 | 0.813961 | 1.963062e-51 | -8.615850e-47 |
| Msa0298950 | Msa0485240 | 0.821090 | 4.856097e-53 | -8.615850e-47 |
| Msa0298950 | Msa0578090 | 0.806058 | 9.892581e-50 | -8.615850e-47 |
| Msa0298950 | Msa0581690 | 0.801770 | 7.696433e-49 | -8.615850e-47 |
| Msa0298950 | Msa0609220 | 0.830376 | 3.040449e-55 | -8.615850e-47 |
| Msa0298950 | Msa0619420 | 0.821237 | 4.491362e-53 | -8.615850e-47 |
| Msa0298950 | Msa0638350 | 0.807911 | 4.009891e-50 | -8.615850e-47 |
| Msa0298950 | Msa0638360 | 0.815138 | 1.077786e-51 | -8.615850e-47 |
| Msa0298950 | Msa0659550 | 0.823211 | 1.565058e-53 | -8.615850e-47 |
| Msa0298950 | Msa0742510 | 0.808482 | 3.031140e-50 | -8.615850e-47 |
| Msa0298950 | Msa0753770 | 0.805512 | 1.288067e-49 | -8.615850e-47 |
| Msa0298950 | Msa0779550 | 0.800854 | 1.185576e-48 | -8.615850e-47 |
| Msa0298950 | Msa0825270 | 0.801625 | 8.241521e-49 | -8.615850e-47 |
| Msa0298950 | Msa0825280 | 0.806434 | 8.241575e-50 | -8.615850e-47 |
| Msa0298950 | Msa0869010 | 0.801483 | 8.815470e-49 | -8.615850e-47 |
| Msa0298950 | Msa0870650 | 0.813933 | 1.991464e-51 | -8.615850e-47 |
| Msa0298950 | Msa0903780 | 0.826236 | 3.031337e-54 | -8.615850e-47 |
| Msa0298950 | Msa1027360 | 0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0298950 | Msa1088290 | 0.800802 | 1.214913e-48 | -8.615850e-47 |
| Msa0298950 | Msa1188560 | 0.811066 | 8.429174e-51 | -8.615850e-47 |
| Msa0298950 | Msa1201810 | 0.809552 | 1.788174e-50 | -8.615850e-47 |
| Msa0298950 | Msa1253810 | 0.809594 | 1.751890e-50 | -8.615850e-47 |
| Msa0298950 | Msa1369690 | 0.804017 | 2.643009e-49 | -8.615850e-47 |
| Msa0298950 | Msa1381650 | 0.834004 | 3.851584e-56 | -8.615850e-47 |
| Msa0298950 | Msa1418240 | 0.826883 | 2.124803e-54 | -8.615850e-47 |
| Msa0298950 | Msa1424780 | 0.805386 | 1.368928e-49 | -8.615850e-47 |
| Msa0298950 | Msa1449910 | 0.809363 | 1.963572e-50 | -8.615850e-47 |
| Msa0298950 | Msa1461540 | 0.813943 | 1.981937e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298950 | MtrunA17_Chr2g0285521 | 97.930 | 483 | 10 | 0 | 1 | 483 | 1 | 483 | 0.0 | 974 |
| Msa0298950 | MtrunA17_Chr8g0363761 | 55.233 | 344 | 149 | 2 | 140 | 483 | 108 | 446 | 2.97e-131 | 394 |
| Msa0298950 | MtrunA17_Chr5g0415331 | 56.657 | 353 | 146 | 4 | 135 | 483 | 88 | 437 | 3.05e-130 | 391 |
| Msa0298950 | MtrunA17_Chr4g0059801 | 53.333 | 330 | 136 | 2 | 154 | 483 | 98 | 409 | 1.82e-120 | 365 |
| Msa0298950 | MtrunA17_Chr5g0417441 | 34.783 | 345 | 190 | 14 | 147 | 483 | 111 | 428 | 3.51e-42 | 159 |
| Msa0298950 | MtrunA17_Chr4g0068981 | 32.635 | 334 | 190 | 8 | 157 | 483 | 131 | 436 | 2.41e-41 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298950 | AT4G21060.2 | 59.388 | 490 | 180 | 5 | 1 | 483 | 1 | 478 | 0.0 | 588 |
| Msa0298950 | AT4G21060.1 | 59.408 | 473 | 176 | 5 | 14 | 483 | 76 | 535 | 0.0 | 565 |
| Msa0298950 | AT5G62620.2 | 47.336 | 488 | 204 | 10 | 13 | 483 | 23 | 474 | 5.35e-142 | 421 |
| Msa0298950 | AT5G62620.1 | 47.336 | 488 | 204 | 10 | 13 | 483 | 23 | 474 | 1.57e-140 | 419 |
| Msa0298950 | AT1G74800.1 | 59.357 | 342 | 126 | 4 | 143 | 483 | 136 | 465 | 6.77e-138 | 412 |
| Msa0298950 | AT1G27120.2 | 50.856 | 409 | 152 | 9 | 105 | 483 | 47 | 436 | 2.73e-129 | 389 |
| Msa0298950 | AT1G27120.1 | 50.735 | 408 | 154 | 8 | 105 | 483 | 78 | 467 | 4.56e-129 | 390 |
| Msa0298950 | AT1G26810.2 | 32.759 | 406 | 219 | 17 | 99 | 483 | 62 | 434 | 2.68e-41 | 156 |
| Msa0298950 | AT1G26810.1 | 32.759 | 406 | 219 | 17 | 99 | 483 | 62 | 434 | 2.68e-41 | 156 |
| Msa0298950 | AT3G06440.1 | 29.762 | 336 | 197 | 9 | 149 | 483 | 116 | 413 | 7.96e-31 | 126 |
| Msa0298950 | AT3G06440.2 | 32.093 | 215 | 132 | 4 | 269 | 483 | 184 | 384 | 1.04e-24 | 107 |
Find 136 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGAATCCTCGTCTAAA+AGG | 0.181282 | 2_3:-53257055 | Msa0298950:CDS |
| AAAATGAATCTCTTAATTCT+AGG | 0.251837 | 2_3:-53257834 | Msa0298950:CDS |
| GGGTAGAGCACTGGCTTTCC+AGG | 0.254753 | 2_3:+53255494 | None:intergenic |
| CAGGGGTTTGGTAGGATTAC+TGG | 0.278668 | 2_3:-53257487 | Msa0298950:CDS |
| CTCTTAATTCTAGGAAGTTT+AGG | 0.282736 | 2_3:-53257825 | Msa0298950:CDS |
| TCCTTCTTCGGTTCCTCTTT+CGG | 0.299800 | 2_3:+53257559 | None:intergenic |
| GCCACAGGGTTGGCAGTTAA+AGG | 0.310341 | 2_3:-53255606 | Msa0298950:CDS |
| GTTGGAGGATAATCGGGATT+TGG | 0.313056 | 2_3:-53257596 | Msa0298950:CDS |
| GGAAATGGCCAGGTCACTTC+TGG | 0.326944 | 2_3:+53256411 | None:intergenic |
| TCATGGTTCAAACGGTTCAT+AGG | 0.328949 | 2_3:-53256447 | Msa0298950:CDS |
| GGATTCAAGTGAAGAATCTT+TGG | 0.329114 | 2_3:+53257067 | None:intergenic |
| GAAGGGTGATGGATTGGTTT+CGG | 0.331357 | 2_3:-53257146 | Msa0298950:CDS |
| CTTCCATGTGGGCTTGCTGC+AGG | 0.331900 | 2_3:-53257241 | Msa0298950:CDS |
| ATAGAAAGTTGGAGGATAAT+CGG | 0.345426 | 2_3:-53257603 | Msa0298950:CDS |
| TAGATGGAGGGATAGCTATT+GGG | 0.351687 | 2_3:-53257687 | Msa0298950:CDS |
| AGTAGAAATGGTTGATGATA+AGG | 0.355129 | 2_3:-53257368 | Msa0298950:CDS |
| GCGGATGAGGCGTGGACATT+AGG | 0.364663 | 2_3:-53257409 | Msa0298950:CDS |
| CTTCCCAGCTTGCGAAGATT+AGG | 0.382826 | 2_3:-53257168 | Msa0298950:CDS |
| CGGTTCCTCTTTCGGCCTCA+AGG | 0.392333 | 2_3:+53257567 | None:intergenic |
| GGCGACCGCCAACATTAATA+TGG | 0.393646 | 2_3:+53256334 | None:intergenic |
| GACATTTCCAGTACTCTTTG+AGG | 0.395680 | 2_3:+53255522 | None:intergenic |
| TTTGTCTGTGCTTGAGAAAA+TGG | 0.399412 | 2_3:-53257431 | Msa0298950:CDS |
| GAGAGTGATGGTAGGTTAGA+TGG | 0.401073 | 2_3:-53257703 | Msa0298950:CDS |
| TACATGTTATCGAATGCATT+GGG | 0.402342 | 2_3:-53256999 | Msa0298950:CDS |
| CAGTTTATGTTTGAGTTACA+AGG | 0.405019 | 2_3:-53257118 | Msa0298950:CDS |
| AAGGATATTCCGCAGGGGTT+TGG | 0.413306 | 2_3:-53257499 | Msa0298950:CDS |
| CTACCCTCTGCAAAAGGAAA+TGG | 0.415835 | 2_3:+53256396 | None:intergenic |
| AGGCTGAGTCTTGTCCTTCC+TGG | 0.415936 | 2_3:-53257312 | Msa0298950:CDS |
| GGACATTAGGATTGAAGGCT+TGG | 0.430265 | 2_3:-53257396 | Msa0298950:CDS |
| TTAGATGGAGGGATAGCTAT+TGG | 0.438700 | 2_3:-53257688 | Msa0298950:CDS |
| ACACTGCGGGCTGGTGTTGA+TGG | 0.438999 | 2_3:-53256360 | Msa0298950:CDS |
| CATGTATTATGCTCAATAAC+CGG | 0.439018 | 2_3:+53257016 | None:intergenic |
| CCTTCCTAATCTTCGCAAGC+TGG | 0.440330 | 2_3:+53257164 | None:intergenic |
| ACTTGAATCCTCGTCTAAAA+GGG | 0.443136 | 2_3:-53257054 | Msa0298950:CDS |
| AACAGAACCAACAAAAGGTT+TGG | 0.449277 | 2_3:+53257642 | None:intergenic |
| AGTACGATTCTTTGTTGCAT+TGG | 0.452233 | 2_3:-53255355 | None:intergenic |
| GAGAAACTTGGGTGTGAAGT+AGG | 0.454516 | 2_3:+53255546 | None:intergenic |
| TTTGAACCATGATGTTGCTT+TGG | 0.457696 | 2_3:+53256458 | None:intergenic |
| TAGAAAGTTGGAGGATAATC+GGG | 0.459291 | 2_3:-53257602 | Msa0298950:CDS |
| ACTCTTTGAGGTGAGAAACT+TGG | 0.462066 | 2_3:+53255534 | None:intergenic |
| GATTAGGAAGGGTGATGGAT+TGG | 0.463906 | 2_3:-53257152 | Msa0298950:CDS |
| GGCGTGGACATTAGGATTGA+AGG | 0.465276 | 2_3:-53257401 | Msa0298950:CDS |
| AACATTCTACCCTCTGCAAA+AGG | 0.472572 | 2_3:+53256390 | None:intergenic |
| GTGGGGAAGATATGTTGAAA+GGG | 0.472732 | 2_3:-53257279 | Msa0298950:CDS |
| TTTCTCACCTCAAAGAGTAC+TGG | 0.474235 | 2_3:-53255529 | Msa0298950:CDS |
| TTCCCCACTCATCGATATCC+AGG | 0.481168 | 2_3:+53257294 | None:intergenic |
| CTCTTTGAGGTGAGAAACTT+GGG | 0.484361 | 2_3:+53255535 | None:intergenic |
| AAAAGTCTAATAGCGTGTTT+GGG | 0.487985 | 2_3:+53255474 | None:intergenic |
| AGGGTTGAAGTCGGTGGAAG+GGG | 0.488025 | 2_3:-53257098 | Msa0298950:CDS |
| AGATGGAGGGATAGCTATTG+GGG | 0.491959 | 2_3:-53257686 | Msa0298950:CDS |
| AGATGCATTTCATAGAAAGT+TGG | 0.492025 | 2_3:-53257614 | Msa0298950:CDS |
| GGTTCCTCTTTCGGCCTCAA+GGG | 0.492558 | 2_3:+53257568 | None:intergenic |
| GGCTTGGAAAGAAGTAGAAA+TGG | 0.492690 | 2_3:-53257380 | Msa0298950:CDS |
| GACACCACATTATGCTCATA+AGG | 0.495610 | 2_3:-53257197 | Msa0298950:CDS |
| CATGGTTCAAACGGTTCATA+GGG | 0.504552 | 2_3:-53256446 | Msa0298950:CDS |
| AGAGGAACCGAAGAAGGAGG+GGG | 0.505039 | 2_3:-53257554 | Msa0298950:CDS |
| GAAAGAGGAACCGAAGAAGG+AGG | 0.509793 | 2_3:-53257557 | Msa0298950:CDS |
| AGCGTGTTTGGGTAGAGCAC+TGG | 0.509918 | 2_3:+53255485 | None:intergenic |
| TTATAAACAGAACCAACAAA+AGG | 0.510179 | 2_3:+53257637 | None:intergenic |
| AATTAACTTACTGTTCGGTA+TGG | 0.510369 | 2_3:+53256297 | None:intergenic |
| ATGACATTGTTGACTCGAAA+GGG | 0.510618 | 2_3:-53256482 | Msa0298950:CDS |
| AATGTTTGTCCTTACACTGC+GGG | 0.510804 | 2_3:-53256373 | Msa0298950:CDS |
| TTTGTCCTTACACTGCGGGC+TGG | 0.513684 | 2_3:-53256369 | Msa0298950:CDS |
| AGGGGATTGGAGCAAACGTC+CGG | 0.513908 | 2_3:-53257035 | Msa0298950:CDS |
| GGTTCTTCGATTACTGTGGT+GGG | 0.516141 | 2_3:-53257220 | Msa0298950:CDS |
| AGTGATGGTAGGTTAGATGG+AGG | 0.517658 | 2_3:-53257700 | Msa0298950:CDS |
| ATCTATGAAGGATATTCCGC+AGG | 0.522206 | 2_3:-53257506 | Msa0298950:CDS |
| CAACACCAGCCCGCAGTGTA+AGG | 0.522526 | 2_3:+53256364 | None:intergenic |
| ATACATGTTATCGAATGCAT+TGG | 0.525785 | 2_3:-53257000 | Msa0298950:CDS |
| TGCATTTCATAGAAAGTTGG+AGG | 0.526404 | 2_3:-53257611 | Msa0298950:CDS |
| CAAGGGTTGAAGTCGGTGGA+AGG | 0.527215 | 2_3:-53257100 | Msa0298950:CDS |
| TGCTCCCTTGAGGCCGAAAG+AGG | 0.530322 | 2_3:-53257572 | Msa0298950:CDS |
| AGGTTCTTCGATTACTGTGG+TGG | 0.532340 | 2_3:-53257221 | Msa0298950:CDS |
| GCCGAAAGAGGAACCGAAGA+AGG | 0.535038 | 2_3:-53257560 | Msa0298950:CDS |
| AAGCAACATCATGGTTCAAA+CGG | 0.535915 | 2_3:-53256455 | Msa0298950:CDS |
| CTCTGCAAAAGGAAATGGCC+AGG | 0.536919 | 2_3:+53256401 | None:intergenic |
| AAGGGTTGAAGTCGGTGGAA+GGG | 0.538675 | 2_3:-53257099 | Msa0298950:CDS |
| GAACCTGCAGCAAGCCCACA+TGG | 0.540094 | 2_3:+53257238 | None:intergenic |
| AAAGAGGAACCGAAGAAGGA+GGG | 0.542829 | 2_3:-53257556 | Msa0298950:CDS |
| ATCCTCGTCTAAAAGGGGAT+TGG | 0.543761 | 2_3:-53257048 | Msa0298950:CDS |
| GATTGATGTTTCTTCCATGT+GGG | 0.544000 | 2_3:-53257252 | Msa0298950:CDS |
| CTTCCTGGATATCGATGAGT+GGG | 0.552463 | 2_3:-53257297 | Msa0298950:CDS |
| TTTACACTTGAAGATGCCAC+AGG | 0.554144 | 2_3:-53255621 | Msa0298950:CDS |
| CTTCCTAATCTTCGCAAGCT+GGG | 0.554887 | 2_3:+53257165 | None:intergenic |
| GAAGATATGTTGAAAGGGGA+TGG | 0.555516 | 2_3:-53257274 | Msa0298950:CDS |
| AGTGGGGAAGATATGTTGAA+AGG | 0.555848 | 2_3:-53257280 | Msa0298950:CDS |
| TTCAAGTGAAGAATCTTTGG+AGG | 0.558004 | 2_3:+53257070 | None:intergenic |
| GAGGATGATGACGGAATGCT+TGG | 0.559077 | 2_3:-53256944 | Msa0298950:intron |
| CCAGCTTGCGAAGATTAGGA+AGG | 0.560757 | 2_3:-53257164 | Msa0298950:CDS |
| GGATTGATGTTTCTTCCATG+TGG | 0.561588 | 2_3:-53257253 | Msa0298950:CDS |
| AGCAGAAACCAGAAGTGACC+TGG | 0.573657 | 2_3:-53256419 | Msa0298950:CDS |
| AGAAAATGGCGGATGAGGCG+TGG | 0.573660 | 2_3:-53257417 | Msa0298950:CDS |
| GATGGATACCATATTAATGT+TGG | 0.575132 | 2_3:-53256342 | Msa0298950:CDS |
| GGATACCATATTAATGTTGG+CGG | 0.576915 | 2_3:-53256339 | Msa0298950:CDS |
| GTGATGGTAGGTTAGATGGA+GGG | 0.578945 | 2_3:-53257699 | Msa0298950:CDS |
| GCTTGAGAAAATGGCGGATG+AGG | 0.579306 | 2_3:-53257422 | Msa0298950:CDS |
| GCGAAGATTAGGAAGGGTGA+TGG | 0.581743 | 2_3:-53257157 | Msa0298950:CDS |
| ACTTGAAGATGCCACAGGGT+TGG | 0.582065 | 2_3:-53255616 | Msa0298950:CDS |
| TACTGGAAATGTCAGAGACC+TGG | 0.582672 | 2_3:-53255512 | Msa0298950:CDS |
| ATATTCCGCAGGGGTTTGGT+AGG | 0.583906 | 2_3:-53257495 | Msa0298950:CDS |
| GTTCTTCGATTACTGTGGTG+GGG | 0.585350 | 2_3:-53257219 | Msa0298950:CDS |
| CTTGAATCCTCGTCTAAAAG+GGG | 0.586390 | 2_3:-53257053 | Msa0298950:CDS |
| AAGAGGAACCGAAGAAGGAG+GGG | 0.589833 | 2_3:-53257555 | Msa0298950:CDS |
| AATGACATTGTTGACTCGAA+AGG | 0.591961 | 2_3:-53256483 | Msa0298950:CDS |
| AAGGGTCCAAAGCAACATCA+TGG | 0.592988 | 2_3:-53256464 | Msa0298950:CDS |
| TCCTTTAACTGCCAACCCTG+TGG | 0.597459 | 2_3:+53255605 | None:intergenic |
| AGTTTATGTTTGAGTTACAA+GGG | 0.604135 | 2_3:-53257117 | Msa0298950:CDS |
| TGGGGAAGATATGTTGAAAG+GGG | 0.605818 | 2_3:-53257278 | Msa0298950:CDS |
| GAATATCCTTCATAGATTCA+CGG | 0.609074 | 2_3:+53257512 | None:intergenic |
| CGGCCATCTGAGGATGATGA+CGG | 0.609357 | 2_3:-53256953 | Msa0298950:CDS |
| ATTCCGTCATCATCCTCAGA+TGG | 0.614980 | 2_3:+53256950 | None:intergenic |
| GTTACAAGGGTTGAAGTCGG+TGG | 0.616755 | 2_3:-53257104 | Msa0298950:CDS |
| TGAGTTACAAGGGTTGAAGT+CGG | 0.618299 | 2_3:-53257107 | Msa0298950:CDS |
| CCTTCCTGGATATCGATGAG+TGG | 0.619399 | 2_3:-53257298 | Msa0298950:CDS |
| GGAACAGCTCAAAGATGTGA+TGG | 0.622156 | 2_3:-53256977 | Msa0298950:CDS |
| CAGCTTGCGAAGATTAGGAA+GGG | 0.622864 | 2_3:-53257163 | Msa0298950:CDS |
| TGATGACCGTGAATCTATGA+AGG | 0.632748 | 2_3:-53257518 | Msa0298950:CDS |
| TCAAGTGAAGAATCTTTGGA+GGG | 0.633051 | 2_3:+53257071 | None:intergenic |
| TCTATGAAGGATATTCCGCA+GGG | 0.637749 | 2_3:-53257505 | Msa0298950:CDS |
| TTGAGTGGTGATGAGAGTGA+TGG | 0.641708 | 2_3:-53257715 | Msa0298950:CDS |
| CAGCTCAAAGATGTGATGGT+CGG | 0.643532 | 2_3:-53256973 | Msa0298950:CDS |
| AAAATTGTATCAACTTTGAG+TGG | 0.643613 | 2_3:-53257730 | Msa0298950:CDS |
| TGCAGGTTCTTCGATTACTG+TGG | 0.645525 | 2_3:-53257224 | Msa0298950:CDS |
| GGGATTTGGATGCTCCCTTG+AGG | 0.646205 | 2_3:-53257582 | Msa0298950:CDS |
| ATGTGATGGTCGGCCATCTG+AGG | 0.658285 | 2_3:-53256963 | Msa0298950:CDS |
| TACTCCTTATGAGCATAATG+TGG | 0.664490 | 2_3:+53257193 | None:intergenic |
| CCACTCATCGATATCCAGGA+AGG | 0.668228 | 2_3:+53257298 | None:intergenic |
| ACATGTTATCGAATGCATTG+GGG | 0.682508 | 2_3:-53256998 | Msa0298950:CDS |
| GAATGTTTGTCCTTACACTG+CGG | 0.683638 | 2_3:-53256374 | Msa0298950:CDS |
| TTACACTTGAAGATGCCACA+GGG | 0.687072 | 2_3:-53255620 | Msa0298950:CDS |
| GGTATGGAAACGAAGTCATG+TGG | 0.696682 | 2_3:+53256313 | None:intergenic |
| GTCTGTGCTTGAGAAAATGG+CGG | 0.697272 | 2_3:-53257428 | Msa0298950:CDS |
| GTGGTGATGAGAGTGATGGT+AGG | 0.709952 | 2_3:-53257711 | Msa0298950:CDS |
| TTCCTGGATATCGATGAGTG+GGG | 0.727939 | 2_3:-53257296 | Msa0298950:CDS |
| CTATGAAGGATATTCCGCAG+GGG | 0.733545 | 2_3:-53257504 | Msa0298950:CDS |
| GTAATCCTACCAAACCCCTG+CGG | 0.767039 | 2_3:+53257490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATGTTGAAAATGAAT+AGG | - | chr2_3:53255741-53255760 | Msa0298950:intron | 15.0% |
| !!! | CATTTTCTATTATACTATTT+TGG | - | chr2_3:53256308-53256327 | Msa0298950:CDS | 15.0% |
| !! | AAAATAAAAGTAACAACATT+AGG | + | chr2_3:53257034-53257053 | None:intergenic | 15.0% |
| !! | TATCATTATTAACTGTAAAA+TGG | + | chr2_3:53257426-53257445 | None:intergenic | 15.0% |
| !! | AAAATGAATCTCTTAATTCT+AGG | - | chr2_3:53255369-53255388 | Msa0298950:CDS | 20.0% |
| !!! | TTCTATTATACTATTTTGGT+AGG | - | chr2_3:53256312-53256331 | Msa0298950:CDS | 20.0% |
| !! | TTATGTCAAAATGTAGATTA+AGG | + | chr2_3:53256603-53256622 | None:intergenic | 20.0% |
| !! | GATGATTATAATTTATTGCA+AGG | - | chr2_3:53257078-53257097 | Msa0298950:CDS | 20.0% |
| !!! | TTTTTATTGAATCTCATAGA+TGG | - | chr2_3:53257362-53257381 | Msa0298950:CDS | 20.0% |
| !!! | TTTTATTGAATCTCATAGAT+GGG | - | chr2_3:53257363-53257382 | Msa0298950:CDS | 20.0% |
| !! | GCTTAAACTCAATTAATAAT+TGG | - | chr2_3:53257480-53257499 | Msa0298950:CDS | 20.0% |
| !!! | AGGTTATCTCATTTTTTGTT+TGG | - | chr2_3:53255398-53255417 | Msa0298950:CDS | 25.0% |
| ! | AAAATTGTATCAACTTTGAG+TGG | - | chr2_3:53255473-53255492 | Msa0298950:CDS | 25.0% |
| ! | TTATAAACAGAACCAACAAA+AGG | + | chr2_3:53255569-53255588 | None:intergenic | 25.0% |
| !! | TTAGAAAGCTCTTTTATTGA+AGG | - | chr2_3:53255863-53255882 | Msa0298950:intron | 25.0% |
| !! | AGTTTATGTTTGAGTTACAA+GGG | - | chr2_3:53256086-53256105 | Msa0298950:intron | 25.0% |
| !! | GAGACTTTGTTAACATATTT+TGG | - | chr2_3:53256408-53256427 | Msa0298950:CDS | 25.0% |
| !!! | CTTTGTTAACATATTTTGGT+AGG | - | chr2_3:53256412-53256431 | Msa0298950:CDS | 25.0% |
| ! | TCCAAGATTAACAAATATTG+TGG | - | chr2_3:53256649-53256668 | Msa0298950:intron | 25.0% |
| ! | ATCTCAATTAACTTACTGTT+CGG | + | chr2_3:53256914-53256933 | None:intergenic | 25.0% |
| !! | TGTATTGCTATCAATTTTCA+TGG | - | chr2_3:53256998-53257017 | Msa0298950:CDS | 25.0% |
| !! | TCTTTGAAAAAAGTTCAGTA+TGG | + | chr2_3:53257058-53257077 | None:intergenic | 25.0% |
| !!! | CATGTTAGGTATTGATAATT+AGG | + | chr2_3:53257222-53257241 | None:intergenic | 25.0% |
| ! | AGATTCAATAAAAATGCAAG+AGG | + | chr2_3:53257356-53257375 | None:intergenic | 25.0% |
| ! | TTTATTGAATCTCATAGATG+GGG | - | chr2_3:53257364-53257383 | Msa0298950:CDS | 25.0% |
| !!! | ATGGGGATTTTTAGTATATA+GGG | - | chr2_3:53257381-53257400 | Msa0298950:CDS | 25.0% |
| !! | AAGAAGCATGGAAATTATAA+TGG | + | chr2_3:53257515-53257534 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTCCACTTTATC+AGG | - | chr2_3:53257557-53257576 | Msa0298950:CDS | 25.0% |
| !! | TTTTCTTTTCCACTTTATCA+GGG | - | chr2_3:53257558-53257577 | Msa0298950:CDS | 25.0% |
| ! | CTCTTAATTCTAGGAAGTTT+AGG | - | chr2_3:53255378-53255397 | Msa0298950:CDS | 30.0% |
| !!! | TCTCATTTTTTGTTTGGTGT+TGG | - | chr2_3:53255404-53255423 | Msa0298950:CDS | 30.0% |
| !!! | CTCATTTTTTGTTTGGTGTT+GGG | - | chr2_3:53255405-53255424 | Msa0298950:CDS | 30.0% |
| !!! | TCATTTTTTGTTTGGTGTTG+GGG | - | chr2_3:53255406-53255425 | Msa0298950:CDS | 30.0% |
| AGATGCATTTCATAGAAAGT+TGG | - | chr2_3:53255589-53255608 | Msa0298950:CDS | 30.0% | |
| ATAGAAAGTTGGAGGATAAT+CGG | - | chr2_3:53255600-53255619 | Msa0298950:CDS | 30.0% | |
| GAATATCCTTCATAGATTCA+CGG | + | chr2_3:53255694-53255713 | None:intergenic | 30.0% | |
| !! | AGTAGAAATGGTTGATGATA+AGG | - | chr2_3:53255835-53255854 | Msa0298950:intron | 30.0% |
| ! | CAGTTTATGTTTGAGTTACA+AGG | - | chr2_3:53256085-53256104 | Msa0298950:intron | 30.0% |
| CATGTATTATGCTCAATAAC+CGG | + | chr2_3:53256190-53256209 | None:intergenic | 30.0% | |
| ATACATGTTATCGAATGCAT+TGG | - | chr2_3:53256203-53256222 | Msa0298950:intron | 30.0% | |
| TACATGTTATCGAATGCATT+GGG | - | chr2_3:53256204-53256223 | Msa0298950:intron | 30.0% | |
| GTAAAAAAGTTCCATTTCCT+TGG | - | chr2_3:53256366-53256385 | Msa0298950:CDS | 30.0% | |
| TTGGATTTATACCAAGGAAA+TGG | + | chr2_3:53256380-53256399 | None:intergenic | 30.0% | |
| AATAAATGGTTGCTAAAGCA+TGG | + | chr2_3:53256448-53256467 | None:intergenic | 30.0% | |
| TACTACAAGCTGCTAATAAA+TGG | + | chr2_3:53256462-53256481 | None:intergenic | 30.0% | |
| ! | GCCACAATATTTGTTAATCT+TGG | + | chr2_3:53256653-53256672 | None:intergenic | 30.0% |
| ! | GGTATAGAAAGTGTGAAAAA+TGG | - | chr2_3:53256691-53256710 | Msa0298950:intron | 30.0% |
| GATGGATACCATATTAATGT+TGG | - | chr2_3:53256861-53256880 | Msa0298950:intron | 30.0% | |
| AATTAACTTACTGTTCGGTA+TGG | + | chr2_3:53256909-53256928 | None:intergenic | 30.0% | |
| ACTTGATTGCAATCAATAAG+TGG | - | chr2_3:53257142-53257161 | Msa0298950:CDS | 30.0% | |
| GGAGTAATAAAGATTCAAGA+AGG | - | chr2_3:53257163-53257182 | Msa0298950:CDS | 30.0% | |
| AAGATTCAAGAAGGACAATT+AGG | - | chr2_3:53257172-53257191 | Msa0298950:CDS | 30.0% | |
| ! | ATGTCTAATGTTGATTACCT+GGG | + | chr2_3:53257255-53257274 | None:intergenic | 30.0% |
| ! | TATGTCTAATGTTGATTACC+TGG | + | chr2_3:53257256-53257275 | None:intergenic | 30.0% |
| !!! | GATGGGGATTTTTAGTATAT+AGG | - | chr2_3:53257380-53257399 | Msa0298950:CDS | 30.0% |
| ! | TTAACTGTAAAATGGCTTTG+CGG | + | chr2_3:53257418-53257437 | None:intergenic | 30.0% |
| AATTGAGTTTAAGCCAAATG+AGG | + | chr2_3:53257474-53257493 | None:intergenic | 30.0% | |
| AAGAATGTAACAAAGAAGCA+TGG | + | chr2_3:53257527-53257546 | None:intergenic | 30.0% | |
| AGTGGAAAAGAAAAATCAGT+TGG | + | chr2_3:53257552-53257571 | None:intergenic | 30.0% | |
| CAAAAACTGAATGAACATCA+AGG | + | chr2_3:53257626-53257645 | None:intergenic | 30.0% | |
| AAAAGTCTAATAGCGTGTTT+GGG | + | chr2_3:53257732-53257751 | None:intergenic | 30.0% | |
| AAAAAGTCTAATAGCGTGTT+TGG | + | chr2_3:53257733-53257752 | None:intergenic | 30.0% | |
| ! | CACGCTATTAGACTTTTTAT+TGG | - | chr2_3:53257735-53257754 | Msa0298950:CDS | 30.0% |
| ! | AAATCATTTTGCAGAACGAA+TGG | - | chr2_3:53257773-53257792 | Msa0298950:CDS | 30.0% |
| ! | GATTTGACCAAACCTTTTGT+TGG | - | chr2_3:53255554-53255573 | Msa0298950:CDS | 35.0% |
| AACAGAACCAACAAAAGGTT+TGG | + | chr2_3:53255564-53255583 | None:intergenic | 35.0% | |
| TGCATTTCATAGAAAGTTGG+AGG | - | chr2_3:53255592-53255611 | Msa0298950:CDS | 35.0% | |
| TAGAAAGTTGGAGGATAATC+GGG | - | chr2_3:53255601-53255620 | Msa0298950:CDS | 35.0% | |
| TTTGTCTGTGCTTGAGAAAA+TGG | - | chr2_3:53255772-53255791 | Msa0298950:intron | 35.0% | |
| ! | GAAAGCTCTTTTATTGAAGG+AGG | - | chr2_3:53255866-53255885 | Msa0298950:intron | 35.0% |
| ! | CTCTTTTATTGAAGGAGGAA+AGG | - | chr2_3:53255871-53255890 | Msa0298950:intron | 35.0% |
| GATTGATGTTTCTTCCATGT+GGG | - | chr2_3:53255951-53255970 | Msa0298950:intron | 35.0% | |
| TACTCCTTATGAGCATAATG+TGG | + | chr2_3:53256013-53256032 | None:intergenic | 35.0% | |
| TCAAGTGAAGAATCTTTGGA+GGG | + | chr2_3:53256135-53256154 | None:intergenic | 35.0% | |
| TTCAAGTGAAGAATCTTTGG+AGG | + | chr2_3:53256136-53256155 | None:intergenic | 35.0% | |
| GGATTCAAGTGAAGAATCTT+TGG | + | chr2_3:53256139-53256158 | None:intergenic | 35.0% | |
| ACTTGAATCCTCGTCTAAAA+GGG | - | chr2_3:53256149-53256168 | Msa0298950:intron | 35.0% | |
| ACATGTTATCGAATGCATTG+GGG | - | chr2_3:53256205-53256224 | Msa0298950:intron | 35.0% | |
| !! | TGGTAGGAAAAAGTGTTGAA+TGG | - | chr2_3:53256328-53256347 | Msa0298950:CDS | 35.0% |
| CATTCGTTGGATTTATACCA+AGG | + | chr2_3:53256386-53256405 | None:intergenic | 35.0% | |
| AACAAAGTCTCAACATTCGT+TGG | + | chr2_3:53256399-53256418 | None:intergenic | 35.0% | |
| !! | TCATCATCCTTGTCACTTTA+GGG | + | chr2_3:53256501-53256520 | None:intergenic | 35.0% |
| TACCCATCAACTGAAAAGTA+TGG | + | chr2_3:53256675-53256694 | None:intergenic | 35.0% | |
| ! | GAAAGTGTGAAAAATGGATG+CGG | - | chr2_3:53256697-53256716 | Msa0298950:intron | 35.0% |
| !! | AATGACATTGTTGACTCGAA+AGG | - | chr2_3:53256720-53256739 | Msa0298950:intron | 35.0% |
| !! | ATGACATTGTTGACTCGAAA+GGG | - | chr2_3:53256721-53256740 | Msa0298950:intron | 35.0% |
| ! | TTTGAACCATGATGTTGCTT+TGG | + | chr2_3:53256748-53256767 | None:intergenic | 35.0% |
| AAGCAACATCATGGTTCAAA+CGG | - | chr2_3:53256748-53256767 | Msa0298950:intron | 35.0% | |
| GGATACCATATTAATGTTGG+CGG | - | chr2_3:53256864-53256883 | Msa0298950:intron | 35.0% | |
| ! | CTATCAATTTTCATGGCGAT+AGG | - | chr2_3:53257005-53257024 | Msa0298950:CDS | 35.0% |
| TAAATACGAGATCAAGAGTG+CGG | + | chr2_3:53257120-53257139 | None:intergenic | 35.0% | |
| TGGGAATTAGGAAACATGTT+AGG | + | chr2_3:53257236-53257255 | None:intergenic | 35.0% | |
| TAACATGTTTCCTAATTCCC+AGG | - | chr2_3:53257235-53257254 | Msa0298950:CDS | 35.0% | |
| ! | ATGTTGATTACCTGGGAATT+AGG | + | chr2_3:53257248-53257267 | None:intergenic | 35.0% |
| TCAAAAACACATTGCTGTCA+CGG | - | chr2_3:53257324-53257343 | Msa0298950:CDS | 35.0% | |
| AGTGTAAAACCCTGATAAAG+TGG | + | chr2_3:53257570-53257589 | None:intergenic | 35.0% | |
| TTAGATGGAGGGATAGCTAT+TGG | - | chr2_3:53255515-53255534 | Msa0298950:CDS | 40.0% | |
| TAGATGGAGGGATAGCTATT+GGG | - | chr2_3:53255516-53255535 | Msa0298950:CDS | 40.0% | |
| TGATGACCGTGAATCTATGA+AGG | - | chr2_3:53255685-53255704 | Msa0298950:intron | 40.0% | |
| ATCTATGAAGGATATTCCGC+AGG | - | chr2_3:53255697-53255716 | Msa0298950:intron | 40.0% | |
| TCTATGAAGGATATTCCGCA+GGG | - | chr2_3:53255698-53255717 | Msa0298950:intron | 40.0% | |
| GGCTTGGAAAGAAGTAGAAA+TGG | - | chr2_3:53255823-53255842 | Msa0298950:intron | 40.0% | |
| AGTGGGGAAGATATGTTGAA+AGG | - | chr2_3:53255923-53255942 | Msa0298950:intron | 40.0% | |
| GTGGGGAAGATATGTTGAAA+GGG | - | chr2_3:53255924-53255943 | Msa0298950:intron | 40.0% | |
| TGGGGAAGATATGTTGAAAG+GGG | - | chr2_3:53255925-53255944 | Msa0298950:intron | 40.0% | |
| GAAGATATGTTGAAAGGGGA+TGG | - | chr2_3:53255929-53255948 | Msa0298950:intron | 40.0% | |
| GGATTGATGTTTCTTCCATG+TGG | - | chr2_3:53255950-53255969 | Msa0298950:intron | 40.0% | |
| GACACCACATTATGCTCATA+AGG | - | chr2_3:53256006-53256025 | Msa0298950:intron | 40.0% | |
| TGAGTTACAAGGGTTGAAGT+CGG | - | chr2_3:53256096-53256115 | Msa0298950:intron | 40.0% | |
| CACTTGAATCCTCGTCTAAA+AGG | - | chr2_3:53256148-53256167 | Msa0298950:intron | 40.0% | |
| CTTGAATCCTCGTCTAAAAG+GGG | - | chr2_3:53256150-53256169 | Msa0298950:intron | 40.0% | |
| AGTGTATCCCTAAAGTGACA+AGG | - | chr2_3:53256491-53256510 | Msa0298950:CDS | 40.0% | |
| !! | CTCATCATCCTTGTCACTTT+AGG | + | chr2_3:53256502-53256521 | None:intergenic | 40.0% |
| ! | TGGCCATACTTTTCAGTTGA+TGG | - | chr2_3:53256669-53256688 | Msa0298950:intron | 40.0% |
| ! | GGCCATACTTTTCAGTTGAT+GGG | - | chr2_3:53256670-53256689 | Msa0298950:intron | 40.0% |
| TCATGGTTCAAACGGTTCAT+AGG | - | chr2_3:53256756-53256775 | Msa0298950:intron | 40.0% | |
| CATGGTTCAAACGGTTCATA+GGG | - | chr2_3:53256757-53256776 | Msa0298950:intron | 40.0% | |
| AACATTCTACCCTCTGCAAA+AGG | + | chr2_3:53256816-53256835 | None:intergenic | 40.0% | |
| GAATGTTTGTCCTTACACTG+CGG | - | chr2_3:53256829-53256848 | Msa0298950:intron | 40.0% | |
| AATGTTTGTCCTTACACTGC+GGG | - | chr2_3:53256830-53256849 | Msa0298950:intron | 40.0% | |
| TGATATGTAACACGTGTCGA+AGG | - | chr2_3:53257447-53257466 | Msa0298950:CDS | 40.0% | |
| TTTACACTTGAAGATGCCAC+AGG | - | chr2_3:53257582-53257601 | Msa0298950:CDS | 40.0% | |
| TTACACTTGAAGATGCCACA+GGG | - | chr2_3:53257583-53257602 | Msa0298950:CDS | 40.0% | |
| !! | CTCTTTGAGGTGAGAAACTT+GGG | + | chr2_3:53257671-53257690 | None:intergenic | 40.0% |
| !! | ACTCTTTGAGGTGAGAAACT+TGG | + | chr2_3:53257672-53257691 | None:intergenic | 40.0% |
| ! | TTTCTCACCTCAAAGAGTAC+TGG | - | chr2_3:53257674-53257693 | Msa0298950:CDS | 40.0% |
| GACATTTCCAGTACTCTTTG+AGG | + | chr2_3:53257684-53257703 | None:intergenic | 40.0% | |
| GAATGGCAGTTCGAAAAACA+TGG | - | chr2_3:53257790-53257809 | Msa0298950:CDS | 40.0% | |
| ! | TTGAGTGGTGATGAGAGTGA+TGG | - | chr2_3:53255488-53255507 | Msa0298950:CDS | 45.0% |
| GAGAGTGATGGTAGGTTAGA+TGG | - | chr2_3:53255500-53255519 | Msa0298950:CDS | 45.0% | |
| AGTGATGGTAGGTTAGATGG+AGG | - | chr2_3:53255503-53255522 | Msa0298950:CDS | 45.0% | |
| GTGATGGTAGGTTAGATGGA+GGG | - | chr2_3:53255504-53255523 | Msa0298950:CDS | 45.0% | |
| AGATGGAGGGATAGCTATTG+GGG | - | chr2_3:53255517-53255536 | Msa0298950:CDS | 45.0% | |
| GTTGGAGGATAATCGGGATT+TGG | - | chr2_3:53255607-53255626 | Msa0298950:CDS | 45.0% | |
| TCCTTCTTCGGTTCCTCTTT+CGG | + | chr2_3:53255647-53255666 | None:intergenic | 45.0% | |
| AAAGAGGAACCGAAGAAGGA+GGG | - | chr2_3:53255647-53255666 | Msa0298950:intron | 45.0% | |
| CTATGAAGGATATTCCGCAG+GGG | - | chr2_3:53255699-53255718 | Msa0298950:intron | 45.0% | |
| GTCTGTGCTTGAGAAAATGG+CGG | - | chr2_3:53255775-53255794 | Msa0298950:intron | 45.0% | |
| GGACATTAGGATTGAAGGCT+TGG | - | chr2_3:53255807-53255826 | Msa0298950:intron | 45.0% | |
| CTTCCTGGATATCGATGAGT+GGG | - | chr2_3:53255906-53255925 | Msa0298950:intron | 45.0% | |
| TTCCTGGATATCGATGAGTG+GGG | - | chr2_3:53255907-53255926 | Msa0298950:intron | 45.0% | |
| TGCAGGTTCTTCGATTACTG+TGG | - | chr2_3:53255979-53255998 | Msa0298950:intron | 45.0% | |
| AGGTTCTTCGATTACTGTGG+TGG | - | chr2_3:53255982-53256001 | Msa0298950:intron | 45.0% | |
| GGTTCTTCGATTACTGTGGT+GGG | - | chr2_3:53255983-53256002 | Msa0298950:intron | 45.0% | |
| GTTCTTCGATTACTGTGGTG+GGG | - | chr2_3:53255984-53256003 | Msa0298950:intron | 45.0% | |
| CTTCCTAATCTTCGCAAGCT+GGG | + | chr2_3:53256041-53256060 | None:intergenic | 45.0% | |
| CAGCTTGCGAAGATTAGGAA+GGG | - | chr2_3:53256040-53256059 | Msa0298950:intron | 45.0% | |
| !! | GATTAGGAAGGGTGATGGAT+TGG | - | chr2_3:53256051-53256070 | Msa0298950:intron | 45.0% |
| !! | GAAGGGTGATGGATTGGTTT+CGG | - | chr2_3:53256057-53256076 | Msa0298950:intron | 45.0% |
| ATCCTCGTCTAAAAGGGGAT+TGG | - | chr2_3:53256155-53256174 | Msa0298950:intron | 45.0% | |
| GGAACAGCTCAAAGATGTGA+TGG | - | chr2_3:53256226-53256245 | Msa0298950:intron | 45.0% | |
| CAGCTCAAAGATGTGATGGT+CGG | - | chr2_3:53256230-53256249 | Msa0298950:intron | 45.0% | |
| ATTCCGTCATCATCCTCAGA+TGG | + | chr2_3:53256256-53256275 | None:intergenic | 45.0% | |
| AAGGGTCCAAAGCAACATCA+TGG | - | chr2_3:53256739-53256758 | Msa0298950:intron | 45.0% | |
| ! | TGGCCATTTCCTTTTGCAGA+GGG | - | chr2_3:53256804-53256823 | Msa0298950:intron | 45.0% |
| CTACCCTCTGCAAAAGGAAA+TGG | + | chr2_3:53256810-53256829 | None:intergenic | 45.0% | |
| GGTATGGAAACGAAGTCATG+TGG | + | chr2_3:53256893-53256912 | None:intergenic | 45.0% | |
| GAGAAACTTGGGTGTGAAGT+AGG | + | chr2_3:53257660-53257679 | None:intergenic | 45.0% | |
| TACTGGAAATGTCAGAGACC+TGG | - | chr2_3:53257691-53257710 | Msa0298950:CDS | 45.0% | |
| ! | GTGGTGATGAGAGTGATGGT+AGG | - | chr2_3:53255492-53255511 | Msa0298950:CDS | 50.0% |
| GAAAGAGGAACCGAAGAAGG+AGG | - | chr2_3:53255646-53255665 | Msa0298950:intron | 50.0% | |
| AAGAGGAACCGAAGAAGGAG+GGG | - | chr2_3:53255648-53255667 | Msa0298950:intron | 50.0% | |
| AAGGATATTCCGCAGGGGTT+TGG | - | chr2_3:53255704-53255723 | Msa0298950:intron | 50.0% | |
| ! | ATATTCCGCAGGGGTTTGGT+AGG | - | chr2_3:53255708-53255727 | Msa0298950:intron | 50.0% |
| GTAATCCTACCAAACCCCTG+CGG | + | chr2_3:53255716-53255735 | None:intergenic | 50.0% | |
| ! | CAGGGGTTTGGTAGGATTAC+TGG | - | chr2_3:53255716-53255735 | Msa0298950:intron | 50.0% |
| !! | GCTTGAGAAAATGGCGGATG+AGG | - | chr2_3:53255781-53255800 | Msa0298950:intron | 50.0% |
| GGCGTGGACATTAGGATTGA+AGG | - | chr2_3:53255802-53255821 | Msa0298950:intron | 50.0% | |
| CCACTCATCGATATCCAGGA+AGG | + | chr2_3:53255908-53255927 | None:intergenic | 50.0% | |
| CCTTCCTGGATATCGATGAG+TGG | - | chr2_3:53255905-53255924 | Msa0298950:intron | 50.0% | |
| TTCCCCACTCATCGATATCC+AGG | + | chr2_3:53255912-53255931 | None:intergenic | 50.0% | |
| CTTCCCAGCTTGCGAAGATT+AGG | - | chr2_3:53256035-53256054 | Msa0298950:intron | 50.0% | |
| CCTTCCTAATCTTCGCAAGC+TGG | + | chr2_3:53256042-53256061 | None:intergenic | 50.0% | |
| CCAGCTTGCGAAGATTAGGA+AGG | - | chr2_3:53256039-53256058 | Msa0298950:intron | 50.0% | |
| GCGAAGATTAGGAAGGGTGA+TGG | - | chr2_3:53256046-53256065 | Msa0298950:intron | 50.0% | |
| GTTACAAGGGTTGAAGTCGG+TGG | - | chr2_3:53256099-53256118 | Msa0298950:intron | 50.0% | |
| AAGGGTTGAAGTCGGTGGAA+GGG | - | chr2_3:53256104-53256123 | Msa0298950:intron | 50.0% | |
| ! | CTCCAATCCCCTTTTAGACG+AGG | + | chr2_3:53256160-53256179 | None:intergenic | 50.0% |
| !! | GAGGATGATGACGGAATGCT+TGG | - | chr2_3:53256259-53256278 | Msa0298950:intron | 50.0% |
| AGCAGAAACCAGAAGTGACC+TGG | - | chr2_3:53256784-53256803 | Msa0298950:intron | 50.0% | |
| CTCTGCAAAAGGAAATGGCC+AGG | + | chr2_3:53256805-53256824 | None:intergenic | 50.0% | |
| ! | CTGGCCATTTCCTTTTGCAG+AGG | - | chr2_3:53256803-53256822 | Msa0298950:intron | 50.0% |
| GGCGACCGCCAACATTAATA+TGG | + | chr2_3:53256872-53256891 | None:intergenic | 50.0% | |
| ACGTGTCGAAGGACCTCATT+TGG | - | chr2_3:53257458-53257477 | Msa0298950:CDS | 50.0% | |
| ACTTGAAGATGCCACAGGGT+TGG | - | chr2_3:53257587-53257606 | Msa0298950:CDS | 50.0% | |
| TCCTTTAACTGCCAACCCTG+TGG | + | chr2_3:53257601-53257620 | None:intergenic | 50.0% | |
| GGGATTTGGATGCTCCCTTG+AGG | - | chr2_3:53255621-53255640 | Msa0298950:CDS | 55.0% | |
| GGTTCCTCTTTCGGCCTCAA+GGG | + | chr2_3:53255638-53255657 | None:intergenic | 55.0% | |
| GCCGAAAGAGGAACCGAAGA+AGG | - | chr2_3:53255643-53255662 | Msa0298950:intron | 55.0% | |
| AGAGGAACCGAAGAAGGAGG+GGG | - | chr2_3:53255649-53255668 | Msa0298950:intron | 55.0% | |
| !! | AGAAAATGGCGGATGAGGCG+TGG | - | chr2_3:53255786-53255805 | Msa0298950:intron | 55.0% |
| ! | AGGCTGAGTCTTGTCCTTCC+TGG | - | chr2_3:53255891-53255910 | Msa0298950:intron | 55.0% |
| CAAGGGTTGAAGTCGGTGGA+AGG | - | chr2_3:53256103-53256122 | Msa0298950:intron | 55.0% | |
| AGGGTTGAAGTCGGTGGAAG+GGG | - | chr2_3:53256105-53256124 | Msa0298950:intron | 55.0% | |
| AGGGGATTGGAGCAAACGTC+CGG | - | chr2_3:53256168-53256187 | Msa0298950:intron | 55.0% | |
| ATGTGATGGTCGGCCATCTG+AGG | - | chr2_3:53256240-53256259 | Msa0298950:intron | 55.0% | |
| CGGCCATCTGAGGATGATGA+CGG | - | chr2_3:53256250-53256269 | Msa0298950:intron | 55.0% | |
| GGAAATGGCCAGGTCACTTC+TGG | + | chr2_3:53256795-53256814 | None:intergenic | 55.0% | |
| TTTGTCCTTACACTGCGGGC+TGG | - | chr2_3:53256834-53256853 | Msa0298950:intron | 55.0% | |
| ! | GCCACAGGGTTGGCAGTTAA+AGG | - | chr2_3:53257597-53257616 | Msa0298950:CDS | 55.0% |
| AGCGTGTTTGGGTAGAGCAC+TGG | + | chr2_3:53257721-53257740 | None:intergenic | 55.0% | |
| TGCTCCCTTGAGGCCGAAAG+AGG | - | chr2_3:53255631-53255650 | Msa0298950:intron | 60.0% | |
| CGGTTCCTCTTTCGGCCTCA+AGG | + | chr2_3:53255639-53255658 | None:intergenic | 60.0% | |
| TCCTCCTCCCCCTCCTTCTT+CGG | + | chr2_3:53255659-53255678 | None:intergenic | 60.0% | |
| GCGGATGAGGCGTGGACATT+AGG | - | chr2_3:53255794-53255813 | Msa0298950:intron | 60.0% | |
| !! | CTTCCATGTGGGCTTGCTGC+AGG | - | chr2_3:53255962-53255981 | Msa0298950:intron | 60.0% |
| GAACCTGCAGCAAGCCCACA+TGG | + | chr2_3:53255968-53255987 | None:intergenic | 60.0% | |
| CAACACCAGCCCGCAGTGTA+AGG | + | chr2_3:53256842-53256861 | None:intergenic | 60.0% | |
| !! | ACACTGCGGGCTGGTGTTGA+TGG | - | chr2_3:53256843-53256862 | Msa0298950:intron | 60.0% |
| !! | GGGTAGAGCACTGGCTTTCC+AGG | + | chr2_3:53257712-53257731 | None:intergenic | 60.0% |
| GGAACCGAAGAAGGAGGGGG+AGG | - | chr2_3:53255652-53255671 | Msa0298950:intron | 65.0% | |
| ACCGAAGAAGGAGGGGGAGG+AGG | - | chr2_3:53255655-53255674 | Msa0298950:intron | 65.0% | |
| GAAGAAGGAGGGGGAGGAGG+AGG | - | chr2_3:53255658-53255677 | Msa0298950:intron | 65.0% | |
| AAGGAGGGGGAGGAGGAGGA+TGG | - | chr2_3:53255662-53255681 | Msa0298950:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 53255356 | 53257869 | 53255356 | ID=Msa0298950;Name=Msa0298950 |
| chr2_3 | mRNA | 53255356 | 53257869 | 53255356 | ID=Msa0298950-mRNA-1;Parent=Msa0298950;Name=Msa0298950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|0.66|3|0|483 |
| chr2_3 | exon | 53256945 | 53257869 | 53256945 | ID=Msa0298950-mRNA-1:exon:17099;Parent=Msa0298950-mRNA-1 |
| chr2_3 | exon | 53256308 | 53256540 | 53256308 | ID=Msa0298950-mRNA-1:exon:17098;Parent=Msa0298950-mRNA-1 |
| chr2_3 | exon | 53255356 | 53255646 | 53255356 | ID=Msa0298950-mRNA-1:exon:17097;Parent=Msa0298950-mRNA-1 |
| chr2_3 | CDS | 53256945 | 53257869 | 53256945 | ID=Msa0298950-mRNA-1:cds;Parent=Msa0298950-mRNA-1 |
| chr2_3 | CDS | 53256308 | 53256540 | 53256308 | ID=Msa0298950-mRNA-1:cds;Parent=Msa0298950-mRNA-1 |
| chr2_3 | CDS | 53255356 | 53255646 | 53255356 | ID=Msa0298950-mRNA-1:cds;Parent=Msa0298950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
