Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262410 | XP_013465166.1 | 90.763 | 249 | 5 | 2 | 1 | 231 | 1 | 249 | 1.79e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262410 | sp|Q9SIL7|FLA6_ARATH | 47.951 | 244 | 96 | 6 | 12 | 231 | 9 | 245 | 1.07e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262410 | A0A072VC68 | 90.763 | 249 | 5 | 2 | 1 | 231 | 1 | 249 | 8.57e-155 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0131050 | Msa0262410 | 0.832137 | 1.122163e-55 | -8.615850e-47 |
| Msa0220960 | Msa0262410 | 0.969962 | 6.714791e-131 | -8.615850e-47 |
| Msa0242820 | Msa0262410 | 0.808094 | 3.666636e-50 | -8.615850e-47 |
| Msa0262410 | Msa0287660 | 0.805440 | 1.333366e-49 | -8.615850e-47 |
| Msa0262410 | Msa0300310 | 0.971268 | 6.753805e-133 | -8.615850e-47 |
| Msa0262410 | Msa0337740 | 0.904647 | 9.868059e-80 | -8.615850e-47 |
| Msa0262410 | Msa1025270 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
| Msa0262410 | Msa1175380 | 0.827884 | 1.222577e-54 | -8.615850e-47 |
| Msa0262410 | Msa1204770 | 0.826929 | 2.071005e-54 | -8.615850e-47 |
| Msa0262410 | Msa1277350 | 0.818804 | 1.618653e-52 | -8.615850e-47 |
| Msa0262410 | Msa1304320 | 0.801235 | 9.908183e-49 | -8.615850e-47 |
| Msa0262410 | Msa1329350 | 0.829642 | 4.591877e-55 | -8.615850e-47 |
| Msa0262410 | Msa1329580 | 0.822695 | 2.064411e-53 | -8.615850e-47 |
| Msa0262410 | Msa1433900 | 0.969743 | 1.424081e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262410 | MtrunA17_Chr2g0325021 | 90.763 | 249 | 5 | 2 | 1 | 231 | 1 | 249 | 1.65e-158 | 439 |
| Msa0262410 | MtrunA17_Chr7g0263981 | 42.775 | 173 | 80 | 3 | 16 | 169 | 17 | 189 | 9.98e-38 | 132 |
| Msa0262410 | MtrunA17_Chr4g0029331 | 46.111 | 180 | 75 | 4 | 14 | 171 | 33 | 212 | 1.64e-37 | 132 |
| Msa0262410 | MtrunA17_Chr4g0029501 | 32.889 | 225 | 123 | 3 | 31 | 227 | 66 | 290 | 6.88e-32 | 117 |
| Msa0262410 | MtrunA17_Chr4g0029441 | 35.263 | 190 | 100 | 2 | 31 | 197 | 66 | 255 | 8.02e-30 | 112 |
| Msa0262410 | MtrunA17_Chr2g0326431 | 44.595 | 148 | 65 | 2 | 38 | 168 | 41 | 188 | 2.46e-29 | 110 |
| Msa0262410 | MtrunA17_Chr4g0026611 | 37.500 | 192 | 93 | 5 | 27 | 194 | 63 | 251 | 2.23e-28 | 108 |
| Msa0262410 | MtrunA17_Chr8g0379621 | 33.071 | 254 | 130 | 10 | 14 | 230 | 66 | 316 | 2.25e-25 | 101 |
| Msa0262410 | MtrunA17_Chr8g0379631 | 32.677 | 254 | 131 | 10 | 14 | 230 | 66 | 316 | 3.88e-25 | 100 |
| Msa0262410 | MtrunA17_Chr2g0284431 | 35.393 | 178 | 94 | 3 | 38 | 196 | 89 | 264 | 6.64e-25 | 99.8 |
| Msa0262410 | MtrunA17_Chr2g0284411 | 35.393 | 178 | 94 | 3 | 38 | 196 | 68 | 243 | 1.23e-24 | 98.6 |
| Msa0262410 | MtrunA17_Chr2g0326421 | 31.222 | 221 | 130 | 4 | 29 | 231 | 60 | 276 | 1.32e-24 | 98.6 |
| Msa0262410 | MtrunA17_Chr8g0379611 | 30.909 | 220 | 130 | 4 | 31 | 229 | 70 | 288 | 4.17e-23 | 95.1 |
| Msa0262410 | MtrunA17_Chr2g0284451 | 32.727 | 220 | 110 | 7 | 20 | 202 | 50 | 268 | 1.58e-22 | 93.2 |
| Msa0262410 | MtrunA17_Chr7g0246041 | 35.468 | 203 | 107 | 7 | 12 | 201 | 161 | 352 | 4.13e-22 | 93.6 |
| Msa0262410 | MtrunA17_Chr4g0029431 | 33.742 | 163 | 90 | 1 | 27 | 171 | 56 | 218 | 7.71e-22 | 90.9 |
| Msa0262410 | MtrunA17_Chr2g0326411 | 34.211 | 152 | 82 | 1 | 38 | 171 | 69 | 220 | 8.00e-22 | 91.3 |
| Msa0262410 | MtrunA17_Chr5g0448001 | 31.034 | 174 | 97 | 4 | 37 | 192 | 47 | 215 | 3.80e-20 | 86.3 |
| Msa0262410 | MtrunA17_Chr5g0448211 | 27.801 | 241 | 132 | 7 | 26 | 230 | 185 | 419 | 3.52e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262410 | AT2G20520.1 | 47.951 | 244 | 96 | 6 | 12 | 231 | 9 | 245 | 1.09e-60 | 191 |
| Msa0262410 | AT1G03870.1 | 50.233 | 215 | 82 | 6 | 37 | 231 | 38 | 247 | 5.00e-57 | 182 |
| Msa0262410 | AT5G44130.1 | 51.556 | 225 | 87 | 4 | 6 | 209 | 3 | 226 | 6.32e-56 | 179 |
| Msa0262410 | AT5G03170.1 | 50.000 | 182 | 71 | 3 | 25 | 187 | 23 | 203 | 1.99e-49 | 162 |
| Msa0262410 | AT5G60490.1 | 41.611 | 149 | 69 | 2 | 38 | 168 | 39 | 187 | 1.33e-30 | 114 |
| Msa0262410 | AT3G60900.1 | 30.612 | 196 | 116 | 6 | 18 | 200 | 171 | 359 | 4.58e-16 | 77.0 |
| Msa0262410 | AT2G04780.1 | 31.250 | 192 | 106 | 6 | 37 | 206 | 45 | 232 | 6.72e-16 | 74.7 |
| Msa0262410 | AT2G04780.2 | 31.250 | 192 | 106 | 6 | 37 | 206 | 45 | 232 | 6.72e-16 | 74.7 |
| Msa0262410 | AT4G12730.1 | 35.625 | 160 | 84 | 6 | 26 | 170 | 179 | 334 | 3.21e-13 | 68.6 |
| Msa0262410 | AT2G45470.1 | 29.677 | 155 | 93 | 4 | 30 | 169 | 180 | 333 | 1.63e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCCTGAGGGTGCTGGTGC+TGG | 0.134067 | 2_2:+61349428 | None:intergenic |
| AGGGTGCTGGTGCTGGGGCT+TGG | 0.151988 | 2_2:+61349435 | None:intergenic |
| AAGATTGCTGTGATGTTTAT+TGG | 0.222736 | 2_2:+61349407 | None:intergenic |
| GGCCTGAGGGTGCTGGTGCT+GGG | 0.229466 | 2_2:+61349429 | None:intergenic |
| CTTCTGGTAAAGAAGGTAAT+TGG | 0.246525 | 2_2:-61348956 | Msa0262410:CDS |
| GGGTGCTGGTGCTGGGGCTT+GGG | 0.247233 | 2_2:+61349436 | None:intergenic |
| CCAGAAGCTTGTGTTCTAAC+TGG | 0.262827 | 2_2:+61348972 | None:intergenic |
| TCATTTGATCTTCTTTGTCT+TGG | 0.265276 | 2_2:-61348568 | Msa0262410:three_prime_UTR |
| CATTTGATCTTCTTTGTCTT+GGG | 0.284575 | 2_2:-61348567 | Msa0262410:three_prime_UTR |
| TCGGAAAGAGAGTAGTATTT+TGG | 0.290230 | 2_2:+61349014 | None:intergenic |
| CTGGTGCTGGGGCTTGGGCA+TGG | 0.308800 | 2_2:+61349441 | None:intergenic |
| GCTGGAAGGAATGTTGGTTT+TGG | 0.343086 | 2_2:-61348669 | Msa0262410:CDS |
| TCCTTTGGCTGTTTATCAAT+TGG | 0.345240 | 2_2:-61348844 | Msa0262410:CDS |
| TTTGGATTTGTTGCTGGGCT+TGG | 0.356493 | 2_2:-61348651 | Msa0262410:CDS |
| TTCTGGTAAAGAAGGTAATT+GGG | 0.362073 | 2_2:-61348955 | Msa0262410:CDS |
| GGGGCTTGGGCATGGATTTG+TGG | 0.365915 | 2_2:+61349449 | None:intergenic |
| AGATTGCTGTGATGTTTATT+GGG | 0.382866 | 2_2:+61349408 | None:intergenic |
| GTTTGAAACTGTTAAGAAAT+CGG | 0.392584 | 2_2:+61348995 | None:intergenic |
| GTGAGAAGAATGAGTGCAAC+AGG | 0.394196 | 2_2:+61349491 | None:intergenic |
| TTTGAGACAACAATTTCCTT+TGG | 0.394518 | 2_2:-61348859 | Msa0262410:CDS |
| TGTCTCAAAGCATTGTTGAT+AGG | 0.394899 | 2_2:+61348873 | None:intergenic |
| AACCAAGTCAATGTTTCAAC+TGG | 0.415400 | 2_2:-61348909 | Msa0262410:CDS |
| CTTCAGAAGTTGAGTTGAGT+TGG | 0.431445 | 2_2:+61349312 | None:intergenic |
| AACATTGACTTGGTTACCTT+GGG | 0.438570 | 2_2:+61348917 | None:intergenic |
| AAGTTGAGTTGAGTTGGGTT+TGG | 0.439465 | 2_2:+61349318 | None:intergenic |
| TTTATTGGGCCTGAGGGTGC+TGG | 0.445785 | 2_2:+61349422 | None:intergenic |
| GCCTGAGGGTGCTGGTGCTG+GGG | 0.448279 | 2_2:+61349430 | None:intergenic |
| ATGGATTTGTGGAGTTAAGA+AGG | 0.451732 | 2_2:+61349460 | None:intergenic |
| TTCAGAAGTTGAGTTGAGTT+GGG | 0.456224 | 2_2:+61349313 | None:intergenic |
| TGGGCTTGGTTTGATTTGCA+TGG | 0.457325 | 2_2:-61348637 | Msa0262410:CDS |
| ACTCCGAGCAGCGACGTTGA+AGG | 0.459155 | 2_2:-61348735 | Msa0262410:CDS |
| CCAGTTAGAACACAAGCTTC+TGG | 0.459667 | 2_2:-61348972 | Msa0262410:CDS |
| CAGAAGCTTGTGTTCTAACT+GGG | 0.462249 | 2_2:+61348973 | None:intergenic |
| GCCCCAGCACCAGCACCCTC+AGG | 0.463369 | 2_2:-61349431 | Msa0262410:CDS |
| AAGAAGGATGATAGTGCAGC+TGG | 0.464254 | 2_2:-61348687 | Msa0262410:CDS |
| GGGCTTGGTTTGATTTGCAT+GGG | 0.469150 | 2_2:-61348636 | Msa0262410:CDS |
| AAACATTGACTTGGTTACCT+TGG | 0.472673 | 2_2:+61348916 | None:intergenic |
| CTCCAGTTGAAACATTGACT+TGG | 0.506376 | 2_2:+61348907 | None:intergenic |
| GAATGAGTTGAACTTTCTGT+TGG | 0.508496 | 2_2:+61349051 | None:intergenic |
| GGTTTGATTTGATATGAACC+TGG | 0.511093 | 2_2:-61348546 | Msa0262410:three_prime_UTR |
| ACACAAGCTTCTGGTAAAGA+AGG | 0.515910 | 2_2:-61348963 | Msa0262410:CDS |
| ATCTCCAGCGTCTAGTAAGA+AGG | 0.521844 | 2_2:-61348703 | Msa0262410:CDS |
| TTCTTACTAGACGCTGGAGA+TGG | 0.526597 | 2_2:+61348705 | None:intergenic |
| CAACTCAACTCAACTTCTGA+AGG | 0.527769 | 2_2:-61349311 | Msa0262410:intron |
| GGTCTTCACTTCACTTCCCA+AGG | 0.534840 | 2_2:-61348933 | Msa0262410:CDS |
| TAAGTCTCCATCTTCATCTC+CGG | 0.540687 | 2_2:-61348787 | Msa0262410:CDS |
| TTTCATTGAGGAGACGAATG+AGG | 0.550194 | 2_2:+61349360 | None:intergenic |
| TCACCTTCAACGTCGCTGCT+CGG | 0.550784 | 2_2:+61348732 | None:intergenic |
| TGGATTTGTGGAGTTAAGAA+GGG | 0.551170 | 2_2:+61349461 | None:intergenic |
| TTAGGAGCCGGAGATGAAGA+TGG | 0.552898 | 2_2:+61348780 | None:intergenic |
| ATAAATACAAAGAATAAGCC+AGG | 0.554395 | 2_2:+61348528 | None:intergenic |
| GTGATGTTTATTGGGCCTGA+GGG | 0.556035 | 2_2:+61349416 | None:intergenic |
| TCCAATTGATAAACAGCCAA+AGG | 0.570662 | 2_2:+61348843 | None:intergenic |
| GGCTGTTTATCAATTGGACA+AGG | 0.577680 | 2_2:-61348838 | Msa0262410:CDS |
| ATTGAGGAGACGAATGAGGA+AGG | 0.579677 | 2_2:+61349364 | None:intergenic |
| GAACTTTCTGTTGGTCTGAG+AGG | 0.589738 | 2_2:+61349060 | None:intergenic |
| AGTGCAGCTGGAAGGAATGT+TGG | 0.593131 | 2_2:-61348675 | Msa0262410:CDS |
| TGTGATGTTTATTGGGCCTG+AGG | 0.596385 | 2_2:+61349415 | None:intergenic |
| TCATCCTTCTTACTAGACGC+TGG | 0.596871 | 2_2:+61348699 | None:intergenic |
| AGTATAAATAAGTTTCACAT+TGG | 0.607356 | 2_2:-61348430 | Msa0262410:three_prime_UTR |
| TCTGGTAAAGAAGGTAATTG+GGG | 0.623440 | 2_2:-61348954 | Msa0262410:CDS |
| AGGATGATAGTGCAGCTGGA+AGG | 0.628901 | 2_2:-61348683 | Msa0262410:CDS |
| TGAGTTGTTGAGTTTCATTG+AGG | 0.637415 | 2_2:+61349348 | None:intergenic |
| GAGTGCAACAGGTGTTGTAG+TGG | 0.647059 | 2_2:+61349502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATATATAATACCTGA+TGG | + | chr2_2:61348669-61348688 | None:intergenic | 15.0% |
| !! | TTTATATATATAATACCTGA+TGG | + | chr2_2:61348669-61348688 | None:intergenic | 15.0% |
| !! | TACATGCAAGTTATAATTAT+AGG | + | chr2_2:61348781-61348800 | None:intergenic | 20.0% |
| !! | TAACATTTATGTCTATTATC+AGG | - | chr2_2:61348816-61348835 | Msa0262410:CDS | 20.0% |
| !! | AGTATAAATAAGTTTCACAT+TGG | - | chr2_2:61349481-61349500 | Msa0262410:CDS | 20.0% |
| !! | TACATGCAAGTTATAATTAT+AGG | + | chr2_2:61348781-61348800 | None:intergenic | 20.0% |
| !! | TAACATTTATGTCTATTATC+AGG | - | chr2_2:61348816-61348835 | Msa0262410:CDS | 20.0% |
| !! | AGTATAAATAAGTTTCACAT+TGG | - | chr2_2:61349481-61349500 | Msa0262410:CDS | 20.0% |
| !! | GTTTGAAACTGTTAAGAAAT+CGG | + | chr2_2:61348919-61348938 | None:intergenic | 25.0% |
| ! | ATAAATACAAAGAATAAGCC+AGG | + | chr2_2:61349386-61349405 | None:intergenic | 25.0% |
| !!! | GATTGTCTTACATATTTTGA+AGG | - | chr2_2:61349436-61349455 | Msa0262410:CDS | 25.0% |
| !! | GTTTGAAACTGTTAAGAAAT+CGG | + | chr2_2:61348919-61348938 | None:intergenic | 25.0% |
| ! | ATAAATACAAAGAATAAGCC+AGG | + | chr2_2:61349386-61349405 | None:intergenic | 25.0% |
| !!! | GATTGTCTTACATATTTTGA+AGG | - | chr2_2:61349436-61349455 | Msa0262410:CDS | 25.0% |
| AGATTGCTGTGATGTTTATT+GGG | + | chr2_2:61348506-61348525 | None:intergenic | 30.0% | |
| AAGATTGCTGTGATGTTTAT+TGG | + | chr2_2:61348507-61348526 | None:intergenic | 30.0% | |
| ! | TAATACCTGATGGAAGATTT+TGG | + | chr2_2:61348659-61348678 | None:intergenic | 30.0% |
| !!! | AGTAGTATTTTGGTGTAACA+TGG | + | chr2_2:61348890-61348909 | None:intergenic | 30.0% |
| TTCTGGTAAAGAAGGTAATT+GGG | - | chr2_2:61348956-61348975 | Msa0262410:CDS | 30.0% | |
| ! | TTTGAGACAACAATTTCCTT+TGG | - | chr2_2:61349052-61349071 | Msa0262410:CDS | 30.0% |
| ! | TTGTTACCTTCTGAACTTTT+TGG | - | chr2_2:61349098-61349117 | Msa0262410:intron | 30.0% |
| TCATTTGATCTTCTTTGTCT+TGG | - | chr2_2:61349343-61349362 | Msa0262410:CDS | 30.0% | |
| CATTTGATCTTCTTTGTCTT+GGG | - | chr2_2:61349344-61349363 | Msa0262410:CDS | 30.0% | |
| AGATTGCTGTGATGTTTATT+GGG | + | chr2_2:61348506-61348525 | None:intergenic | 30.0% | |
| AAGATTGCTGTGATGTTTAT+TGG | + | chr2_2:61348507-61348526 | None:intergenic | 30.0% | |
| ! | TAATACCTGATGGAAGATTT+TGG | + | chr2_2:61348659-61348678 | None:intergenic | 30.0% |
| !!! | AGTAGTATTTTGGTGTAACA+TGG | + | chr2_2:61348890-61348909 | None:intergenic | 30.0% |
| TTCTGGTAAAGAAGGTAATT+GGG | - | chr2_2:61348956-61348975 | Msa0262410:CDS | 30.0% | |
| ! | TTTGAGACAACAATTTCCTT+TGG | - | chr2_2:61349052-61349071 | Msa0262410:CDS | 30.0% |
| ! | TTGTTACCTTCTGAACTTTT+TGG | - | chr2_2:61349098-61349117 | Msa0262410:intron | 30.0% |
| TCATTTGATCTTCTTTGTCT+TGG | - | chr2_2:61349343-61349362 | Msa0262410:CDS | 30.0% | |
| CATTTGATCTTCTTTGTCTT+GGG | - | chr2_2:61349344-61349363 | Msa0262410:CDS | 30.0% | |
| TGGATTTGTGGAGTTAAGAA+GGG | + | chr2_2:61348453-61348472 | None:intergenic | 35.0% | |
| ATGGATTTGTGGAGTTAAGA+AGG | + | chr2_2:61348454-61348473 | None:intergenic | 35.0% | |
| ! | ACAGCAATCTTTGAAAAAGC+TGG | - | chr2_2:61348516-61348535 | Msa0262410:three_prime_UTR | 35.0% |
| TGAGTTGTTGAGTTTCATTG+AGG | + | chr2_2:61348566-61348585 | None:intergenic | 35.0% | |
| !! | TTCAGAAGTTGAGTTGAGTT+GGG | + | chr2_2:61348601-61348620 | None:intergenic | 35.0% |
| ! | GAATGAGTTGAACTTTCTGT+TGG | + | chr2_2:61348863-61348882 | None:intergenic | 35.0% |
| ! | TCGGAAAGAGAGTAGTATTT+TGG | + | chr2_2:61348900-61348919 | None:intergenic | 35.0% |
| CTTCTGGTAAAGAAGGTAAT+TGG | - | chr2_2:61348955-61348974 | Msa0262410:CDS | 35.0% | |
| TCTGGTAAAGAAGGTAATTG+GGG | - | chr2_2:61348957-61348976 | Msa0262410:CDS | 35.0% | |
| !! | AACATTGACTTGGTTACCTT+GGG | + | chr2_2:61348997-61349016 | None:intergenic | 35.0% |
| !! | AAACATTGACTTGGTTACCT+TGG | + | chr2_2:61348998-61349017 | None:intergenic | 35.0% |
| AACCAAGTCAATGTTTCAAC+TGG | - | chr2_2:61349002-61349021 | Msa0262410:CDS | 35.0% | |
| !! | TGTCTCAAAGCATTGTTGAT+AGG | + | chr2_2:61349041-61349060 | None:intergenic | 35.0% |
| TCCTTTGGCTGTTTATCAAT+TGG | - | chr2_2:61349067-61349086 | Msa0262410:CDS | 35.0% | |
| TCCAATTGATAAACAGCCAA+AGG | + | chr2_2:61349071-61349090 | None:intergenic | 35.0% | |
| TTAGCACCAAAAAGTTCAGA+AGG | + | chr2_2:61349107-61349126 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATTTGTTGCT+GGG | - | chr2_2:61349255-61349274 | Msa0262410:intron | 35.0% |
| !! | GGTTTGATTTGATATGAACC+TGG | - | chr2_2:61349365-61349384 | Msa0262410:CDS | 35.0% |
| TGGATTTGTGGAGTTAAGAA+GGG | + | chr2_2:61348453-61348472 | None:intergenic | 35.0% | |
| ATGGATTTGTGGAGTTAAGA+AGG | + | chr2_2:61348454-61348473 | None:intergenic | 35.0% | |
| ! | ACAGCAATCTTTGAAAAAGC+TGG | - | chr2_2:61348516-61348535 | Msa0262410:three_prime_UTR | 35.0% |
| TGAGTTGTTGAGTTTCATTG+AGG | + | chr2_2:61348566-61348585 | None:intergenic | 35.0% | |
| !! | TTCAGAAGTTGAGTTGAGTT+GGG | + | chr2_2:61348601-61348620 | None:intergenic | 35.0% |
| ! | GAATGAGTTGAACTTTCTGT+TGG | + | chr2_2:61348863-61348882 | None:intergenic | 35.0% |
| ! | TCGGAAAGAGAGTAGTATTT+TGG | + | chr2_2:61348900-61348919 | None:intergenic | 35.0% |
| CTTCTGGTAAAGAAGGTAAT+TGG | - | chr2_2:61348955-61348974 | Msa0262410:CDS | 35.0% | |
| TCTGGTAAAGAAGGTAATTG+GGG | - | chr2_2:61348957-61348976 | Msa0262410:CDS | 35.0% | |
| !! | AACATTGACTTGGTTACCTT+GGG | + | chr2_2:61348997-61349016 | None:intergenic | 35.0% |
| !! | AAACATTGACTTGGTTACCT+TGG | + | chr2_2:61348998-61349017 | None:intergenic | 35.0% |
| AACCAAGTCAATGTTTCAAC+TGG | - | chr2_2:61349002-61349021 | Msa0262410:CDS | 35.0% | |
| !! | TGTCTCAAAGCATTGTTGAT+AGG | + | chr2_2:61349041-61349060 | None:intergenic | 35.0% |
| TCCTTTGGCTGTTTATCAAT+TGG | - | chr2_2:61349067-61349086 | Msa0262410:CDS | 35.0% | |
| TCCAATTGATAAACAGCCAA+AGG | + | chr2_2:61349071-61349090 | None:intergenic | 35.0% | |
| TTAGCACCAAAAAGTTCAGA+AGG | + | chr2_2:61349107-61349126 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGGATTTGTTGCT+GGG | - | chr2_2:61349255-61349274 | Msa0262410:intron | 35.0% |
| !! | GGTTTGATTTGATATGAACC+TGG | - | chr2_2:61349365-61349384 | Msa0262410:CDS | 35.0% |
| TTTCATTGAGGAGACGAATG+AGG | + | chr2_2:61348554-61348573 | None:intergenic | 40.0% | |
| !! | AAGTTGAGTTGAGTTGGGTT+TGG | + | chr2_2:61348596-61348615 | None:intergenic | 40.0% |
| !! | CTTCAGAAGTTGAGTTGAGT+TGG | + | chr2_2:61348602-61348621 | None:intergenic | 40.0% |
| CAACTCAACTCAACTTCTGA+AGG | - | chr2_2:61348600-61348619 | Msa0262410:three_prime_UTR | 40.0% | |
| !! | TTTGGAAGGCATTGTCAGTT+GGG | + | chr2_2:61348641-61348660 | None:intergenic | 40.0% |
| !!! | TTTTGGAAGGCATTGTCAGT+TGG | + | chr2_2:61348642-61348661 | None:intergenic | 40.0% |
| ! | ACCTGATGGAAGATTTTGGA+AGG | + | chr2_2:61348655-61348674 | None:intergenic | 40.0% |
| CAGAAGCTTGTGTTCTAACT+GGG | + | chr2_2:61348941-61348960 | None:intergenic | 40.0% | |
| ACACAAGCTTCTGGTAAAGA+AGG | - | chr2_2:61348948-61348967 | Msa0262410:CDS | 40.0% | |
| ! | CTCCAGTTGAAACATTGACT+TGG | + | chr2_2:61349007-61349026 | None:intergenic | 40.0% |
| GGCTGTTTATCAATTGGACA+AGG | - | chr2_2:61349073-61349092 | Msa0262410:CDS | 40.0% | |
| TAAGTCTCCATCTTCATCTC+CGG | - | chr2_2:61349124-61349143 | Msa0262410:intron | 40.0% | |
| !!! | GTTGGTTTTGGATTTGTTGC+TGG | - | chr2_2:61349254-61349273 | Msa0262410:intron | 40.0% |
| TTTCATTGAGGAGACGAATG+AGG | + | chr2_2:61348554-61348573 | None:intergenic | 40.0% | |
| !! | AAGTTGAGTTGAGTTGGGTT+TGG | + | chr2_2:61348596-61348615 | None:intergenic | 40.0% |
| !! | CTTCAGAAGTTGAGTTGAGT+TGG | + | chr2_2:61348602-61348621 | None:intergenic | 40.0% |
| CAACTCAACTCAACTTCTGA+AGG | - | chr2_2:61348600-61348619 | Msa0262410:three_prime_UTR | 40.0% | |
| !! | TTTGGAAGGCATTGTCAGTT+GGG | + | chr2_2:61348641-61348660 | None:intergenic | 40.0% |
| !!! | TTTTGGAAGGCATTGTCAGT+TGG | + | chr2_2:61348642-61348661 | None:intergenic | 40.0% |
| ! | ACCTGATGGAAGATTTTGGA+AGG | + | chr2_2:61348655-61348674 | None:intergenic | 40.0% |
| CAGAAGCTTGTGTTCTAACT+GGG | + | chr2_2:61348941-61348960 | None:intergenic | 40.0% | |
| ACACAAGCTTCTGGTAAAGA+AGG | - | chr2_2:61348948-61348967 | Msa0262410:CDS | 40.0% | |
| ! | CTCCAGTTGAAACATTGACT+TGG | + | chr2_2:61349007-61349026 | None:intergenic | 40.0% |
| GGCTGTTTATCAATTGGACA+AGG | - | chr2_2:61349073-61349092 | Msa0262410:CDS | 40.0% | |
| TAAGTCTCCATCTTCATCTC+CGG | - | chr2_2:61349124-61349143 | Msa0262410:intron | 40.0% | |
| !!! | GTTGGTTTTGGATTTGTTGC+TGG | - | chr2_2:61349254-61349273 | Msa0262410:intron | 40.0% |
| GTGAGAAGAATGAGTGCAAC+AGG | + | chr2_2:61348423-61348442 | None:intergenic | 45.0% | |
| GTGATGTTTATTGGGCCTGA+GGG | + | chr2_2:61348498-61348517 | None:intergenic | 45.0% | |
| TGTGATGTTTATTGGGCCTG+AGG | + | chr2_2:61348499-61348518 | None:intergenic | 45.0% | |
| ATTGAGGAGACGAATGAGGA+AGG | + | chr2_2:61348550-61348569 | None:intergenic | 45.0% | |
| !! | TTGGAAGGCATTGTCAGTTG+GGG | + | chr2_2:61348640-61348659 | None:intergenic | 45.0% |
| GCCTTCCAAAATCTTCCATC+AGG | - | chr2_2:61348651-61348670 | Msa0262410:CDS | 45.0% | |
| ! | GAACTTTCTGTTGGTCTGAG+AGG | + | chr2_2:61348854-61348873 | None:intergenic | 45.0% |
| CCAGAAGCTTGTGTTCTAAC+TGG | + | chr2_2:61348942-61348961 | None:intergenic | 45.0% | |
| CCAGTTAGAACACAAGCTTC+TGG | - | chr2_2:61348939-61348958 | Msa0262410:CDS | 45.0% | |
| ! | GAAGGAGTTTTCGACGACTT+AGG | + | chr2_2:61349152-61349171 | None:intergenic | 45.0% |
| TTCTTACTAGACGCTGGAGA+TGG | + | chr2_2:61349209-61349228 | None:intergenic | 45.0% | |
| ATCTCCAGCGTCTAGTAAGA+AGG | - | chr2_2:61349208-61349227 | Msa0262410:intron | 45.0% | |
| TCATCCTTCTTACTAGACGC+TGG | + | chr2_2:61349215-61349234 | None:intergenic | 45.0% | |
| ! | AAGAAGGATGATAGTGCAGC+TGG | - | chr2_2:61349224-61349243 | Msa0262410:intron | 45.0% |
| !!! | GCTGGAAGGAATGTTGGTTT+TGG | - | chr2_2:61349242-61349261 | Msa0262410:intron | 45.0% |
| !! | TTTGGATTTGTTGCTGGGCT+TGG | - | chr2_2:61349260-61349279 | Msa0262410:intron | 45.0% |
| !! | TGGGCTTGGTTTGATTTGCA+TGG | - | chr2_2:61349274-61349293 | Msa0262410:intron | 45.0% |
| !! | GGGCTTGGTTTGATTTGCAT+GGG | - | chr2_2:61349275-61349294 | Msa0262410:intron | 45.0% |
| GTGAGAAGAATGAGTGCAAC+AGG | + | chr2_2:61348423-61348442 | None:intergenic | 45.0% | |
| GTGATGTTTATTGGGCCTGA+GGG | + | chr2_2:61348498-61348517 | None:intergenic | 45.0% | |
| TGTGATGTTTATTGGGCCTG+AGG | + | chr2_2:61348499-61348518 | None:intergenic | 45.0% | |
| ATTGAGGAGACGAATGAGGA+AGG | + | chr2_2:61348550-61348569 | None:intergenic | 45.0% | |
| !! | TTGGAAGGCATTGTCAGTTG+GGG | + | chr2_2:61348640-61348659 | None:intergenic | 45.0% |
| GCCTTCCAAAATCTTCCATC+AGG | - | chr2_2:61348651-61348670 | Msa0262410:CDS | 45.0% | |
| ! | GAACTTTCTGTTGGTCTGAG+AGG | + | chr2_2:61348854-61348873 | None:intergenic | 45.0% |
| CCAGAAGCTTGTGTTCTAAC+TGG | + | chr2_2:61348942-61348961 | None:intergenic | 45.0% | |
| CCAGTTAGAACACAAGCTTC+TGG | - | chr2_2:61348939-61348958 | Msa0262410:CDS | 45.0% | |
| ! | GAAGGAGTTTTCGACGACTT+AGG | + | chr2_2:61349152-61349171 | None:intergenic | 45.0% |
| TTCTTACTAGACGCTGGAGA+TGG | + | chr2_2:61349209-61349228 | None:intergenic | 45.0% | |
| ATCTCCAGCGTCTAGTAAGA+AGG | - | chr2_2:61349208-61349227 | Msa0262410:intron | 45.0% | |
| TCATCCTTCTTACTAGACGC+TGG | + | chr2_2:61349215-61349234 | None:intergenic | 45.0% | |
| ! | AAGAAGGATGATAGTGCAGC+TGG | - | chr2_2:61349224-61349243 | Msa0262410:intron | 45.0% |
| !!! | GCTGGAAGGAATGTTGGTTT+TGG | - | chr2_2:61349242-61349261 | Msa0262410:intron | 45.0% |
| !! | TTTGGATTTGTTGCTGGGCT+TGG | - | chr2_2:61349260-61349279 | Msa0262410:intron | 45.0% |
| !! | TGGGCTTGGTTTGATTTGCA+TGG | - | chr2_2:61349274-61349293 | Msa0262410:intron | 45.0% |
| !! | GGGCTTGGTTTGATTTGCAT+GGG | - | chr2_2:61349275-61349294 | Msa0262410:intron | 45.0% |
| !!! | ATAGTAATTTTTTTTATTAA+AGG | + | chr2_2:61349507-61349526 | None:intergenic | 5.0% |
| !!! | ATAGTAATTTTTTTTATTAA+AGG | + | chr2_2:61349507-61349526 | None:intergenic | 5.0% |
| ! | GAGTGCAACAGGTGTTGTAG+TGG | + | chr2_2:61348412-61348431 | None:intergenic | 50.0% |
| GGTCTTCACTTCACTTCCCA+AGG | - | chr2_2:61348978-61348997 | Msa0262410:CDS | 50.0% | |
| TTAGGAGCCGGAGATGAAGA+TGG | + | chr2_2:61349134-61349153 | None:intergenic | 50.0% | |
| ! | GTTTTCGACGACTTAGGAGC+CGG | + | chr2_2:61349146-61349165 | None:intergenic | 50.0% |
| !!! | TCGCTGCTCGGAGTTTTAGA+AGG | + | chr2_2:61349170-61349189 | None:intergenic | 50.0% |
| ! | AGGATGATAGTGCAGCTGGA+AGG | - | chr2_2:61349228-61349247 | Msa0262410:intron | 50.0% |
| AGTGCAGCTGGAAGGAATGT+TGG | - | chr2_2:61349236-61349255 | Msa0262410:intron | 50.0% | |
| ! | GAGTGCAACAGGTGTTGTAG+TGG | + | chr2_2:61348412-61348431 | None:intergenic | 50.0% |
| GGTCTTCACTTCACTTCCCA+AGG | - | chr2_2:61348978-61348997 | Msa0262410:CDS | 50.0% | |
| TTAGGAGCCGGAGATGAAGA+TGG | + | chr2_2:61349134-61349153 | None:intergenic | 50.0% | |
| ! | GTTTTCGACGACTTAGGAGC+CGG | + | chr2_2:61349146-61349165 | None:intergenic | 50.0% |
| !!! | TCGCTGCTCGGAGTTTTAGA+AGG | + | chr2_2:61349170-61349189 | None:intergenic | 50.0% |
| ! | AGGATGATAGTGCAGCTGGA+AGG | - | chr2_2:61349228-61349247 | Msa0262410:intron | 50.0% |
| AGTGCAGCTGGAAGGAATGT+TGG | - | chr2_2:61349236-61349255 | Msa0262410:intron | 50.0% | |
| ! | TTTATTGGGCCTGAGGGTGC+TGG | + | chr2_2:61348492-61348511 | None:intergenic | 55.0% |
| TCACCTTCAACGTCGCTGCT+CGG | + | chr2_2:61349182-61349201 | None:intergenic | 55.0% | |
| ! | TTTATTGGGCCTGAGGGTGC+TGG | + | chr2_2:61348492-61348511 | None:intergenic | 55.0% |
| TCACCTTCAACGTCGCTGCT+CGG | + | chr2_2:61349182-61349201 | None:intergenic | 55.0% | |
| GGGGCTTGGGCATGGATTTG+TGG | + | chr2_2:61348465-61348484 | None:intergenic | 60.0% | |
| ACTCCGAGCAGCGACGTTGA+AGG | - | chr2_2:61349176-61349195 | Msa0262410:intron | 60.0% | |
| GGGGCTTGGGCATGGATTTG+TGG | + | chr2_2:61348465-61348484 | None:intergenic | 60.0% | |
| ACTCCGAGCAGCGACGTTGA+AGG | - | chr2_2:61349176-61349195 | Msa0262410:intron | 60.0% | |
| ! | CTGGTGCTGGGGCTTGGGCA+TGG | + | chr2_2:61348473-61348492 | None:intergenic | 70.0% |
| !! | GGGTGCTGGTGCTGGGGCTT+GGG | + | chr2_2:61348478-61348497 | None:intergenic | 70.0% |
| !! | AGGGTGCTGGTGCTGGGGCT+TGG | + | chr2_2:61348479-61348498 | None:intergenic | 70.0% |
| !! | GCCTGAGGGTGCTGGTGCTG+GGG | + | chr2_2:61348484-61348503 | None:intergenic | 70.0% |
| !! | GGCCTGAGGGTGCTGGTGCT+GGG | + | chr2_2:61348485-61348504 | None:intergenic | 70.0% |
| ! | CTGGTGCTGGGGCTTGGGCA+TGG | + | chr2_2:61348473-61348492 | None:intergenic | 70.0% |
| !! | GGGTGCTGGTGCTGGGGCTT+GGG | + | chr2_2:61348478-61348497 | None:intergenic | 70.0% |
| !! | AGGGTGCTGGTGCTGGGGCT+TGG | + | chr2_2:61348479-61348498 | None:intergenic | 70.0% |
| !! | GCCTGAGGGTGCTGGTGCTG+GGG | + | chr2_2:61348484-61348503 | None:intergenic | 70.0% |
| !! | GGCCTGAGGGTGCTGGTGCT+GGG | + | chr2_2:61348485-61348504 | None:intergenic | 70.0% |
| GCCCCAGCACCAGCACCCTC+AGG | - | chr2_2:61348480-61348499 | Msa0262410:three_prime_UTR | 75.0% | |
| !! | GGGCCTGAGGGTGCTGGTGC+TGG | + | chr2_2:61348486-61348505 | None:intergenic | 75.0% |
| GCCCCAGCACCAGCACCCTC+AGG | - | chr2_2:61348480-61348499 | Msa0262410:three_prime_UTR | 75.0% | |
| !! | GGGCCTGAGGGTGCTGGTGC+TGG | + | chr2_2:61348486-61348505 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 61348399 | 61349534 | 61348399 | ID=Msa0262410;Name=Msa0262410 |
| chr2_2 | mRNA | 61348399 | 61349534 | 61348399 | ID=Msa0262410-mRNA-1;Parent=Msa0262410;Name=Msa0262410-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.5|1|1|1|2|224|231 |
| chr2_2 | exon | 61348399 | 61349095 | 61348399 | ID=Msa0262410-mRNA-1:exon:18890;Parent=Msa0262410-mRNA-1 |
| chr2_2 | exon | 61349312 | 61349534 | 61349312 | ID=Msa0262410-mRNA-1:exon:18889;Parent=Msa0262410-mRNA-1 |
| chr2_2 | CDS | 61349312 | 61349534 | 61349312 | ID=Msa0262410-mRNA-1:cds;Parent=Msa0262410-mRNA-1 |
| chr2_2 | CDS | 61348623 | 61349095 | 61348623 | ID=Msa0262410-mRNA-1:cds;Parent=Msa0262410-mRNA-1 |
| chr2_2 | three_prime_UTR | 61348399 | 61348622 | 61348399 | ID=Msa0262410-mRNA-1:three_prime_utr;Parent=Msa0262410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
