Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271180 | XP_013464357.1 | 96.479 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271180 | sp|Q9XGI7|NAS_SOLLC | 48.485 | 264 | 136 | 0 | 18 | 281 | 9 | 272 | 3.43e-92 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271180 | A0A072V9C6 | 96.479 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069480 | Msa0271180 | 0.802089 | 6.618723e-49 | -8.615850e-47 |
| Msa0073270 | Msa0271180 | 0.804369 | 2.233022e-49 | -8.615850e-47 |
| Msa0210790 | Msa0271180 | 0.804340 | 2.264242e-49 | -8.615850e-47 |
| Msa0210850 | Msa0271180 | 0.803681 | 3.104190e-49 | -8.615850e-47 |
| Msa0220090 | Msa0271180 | 0.819794 | 9.634519e-53 | -8.615850e-47 |
| Msa0251120 | Msa0271180 | 0.815123 | 1.086231e-51 | -8.615850e-47 |
| Msa0261400 | Msa0271180 | 0.812450 | 4.214834e-51 | -8.615850e-47 |
| Msa0271180 | Msa0537210 | 0.803926 | 2.761326e-49 | -8.615850e-47 |
| Msa0271180 | Msa0562050 | 0.806146 | 9.479531e-50 | -8.615850e-47 |
| Msa0271180 | Msa0566930 | 0.800559 | 1.361605e-48 | -8.615850e-47 |
| Msa0271180 | Msa0580210 | 0.811710 | 6.108891e-51 | -8.615850e-47 |
| Msa0271180 | Msa0655430 | 0.836845 | 7.367614e-57 | -8.615850e-47 |
| Msa0271180 | Msa0655800 | 0.816557 | 5.201891e-52 | -8.615850e-47 |
| Msa0271180 | Msa0716700 | 0.800180 | 1.626470e-48 | -8.615850e-47 |
| Msa0271180 | Msa0772420 | 0.814048 | 1.878296e-51 | -8.615850e-47 |
| Msa0271180 | Msa0893840 | 0.803460 | 3.449854e-49 | -8.615850e-47 |
| Msa0271180 | Msa1037350 | 0.815087 | 1.106361e-51 | -8.615850e-47 |
| Msa0271180 | Msa1076830 | 0.816789 | 4.613700e-52 | -8.615850e-47 |
| Msa0271180 | Msa1123010 | 0.828846 | 7.163455e-55 | -8.615850e-47 |
| Msa0271180 | Msa1164240 | 0.817840 | 2.676838e-52 | -8.615850e-47 |
| Msa0271180 | Msa1376070 | 0.819962 | 8.816890e-53 | -8.615850e-47 |
| Msa0271180 | Msa1377520 | 0.801044 | 1.084007e-48 | -8.615850e-47 |
| Msa0271180 | Msa1407670 | 0.811030 | 8.582075e-51 | -8.615850e-47 |
| Msa0271180 | Msa1449770 | 0.815458 | 9.149774e-52 | -8.615850e-47 |
| Msa0271180 | Msa1459610 | 0.803097 | 4.101922e-49 | -8.615850e-47 |
| Msa0271180 | Msa1459660 | 0.801056 | 1.078165e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271180 | MtrunA17_Chr2g0312871 | 96.479 | 284 | 10 | 0 | 1 | 284 | 1 | 284 | 0.0 | 565 |
| Msa0271180 | MtrunA17_Chr1g0192781 | 49.064 | 267 | 136 | 0 | 15 | 281 | 38 | 304 | 2.07e-92 | 277 |
| Msa0271180 | MtrunA17_Chr7g0271801 | 47.940 | 267 | 139 | 0 | 15 | 281 | 5 | 271 | 6.64e-91 | 272 |
| Msa0271180 | MtrunA17_Chr2g0294441 | 47.955 | 269 | 138 | 2 | 15 | 281 | 5 | 273 | 8.16e-87 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271180 | AT5G56080.1 | 51.661 | 271 | 126 | 3 | 15 | 281 | 5 | 274 | 1.23e-90 | 272 |
| Msa0271180 | AT5G04950.1 | 49.446 | 271 | 133 | 2 | 15 | 281 | 5 | 275 | 2.69e-90 | 271 |
| Msa0271180 | AT1G56430.1 | 48.881 | 268 | 132 | 4 | 18 | 281 | 9 | 275 | 7.18e-88 | 265 |
| Msa0271180 | AT1G09240.1 | 50.923 | 271 | 128 | 4 | 15 | 281 | 5 | 274 | 1.19e-87 | 264 |
Find 56 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCACTAAGTTCAATTATAT+TGG | 0.247107 | 2_3:+2486100 | Msa0271180:CDS |
| ATTTGTGACACAAGATATTA+TGG | 0.267068 | 2_3:+2486235 | Msa0271180:CDS |
| TAGCTTATCGATCAAGCTTT+AGG | 0.325153 | 2_3:-2486518 | None:intergenic |
| TTTCTAAGCTAGAATCTCTT+AGG | 0.328740 | 2_3:+2485760 | Msa0271180:CDS |
| TCCTTCTGCTTTGCCACAAA+GGG | 0.365628 | 2_3:-2485901 | None:intergenic |
| CAGCTTCAAAATTGAAGGAT+TGG | 0.377323 | 2_3:-2485686 | None:intergenic |
| TGCTAGGAAGATTGTGGCTT+CGG | 0.391793 | 2_3:+2486187 | Msa0271180:CDS |
| CATTCACAACACCATTCTCT+TGG | 0.394956 | 2_3:-2486043 | None:intergenic |
| TTAACATAGTTTCCATGGTA+AGG | 0.396731 | 2_3:-2485993 | None:intergenic |
| GCCAATATAATTGAACTTAG+TGG | 0.399358 | 2_3:-2486101 | None:intergenic |
| ATGGAAGCTAAGGAGAGGTT+AGG | 0.399895 | 2_3:+2486254 | Msa0271180:CDS |
| AAAGTAGCATTTATAGGATC+TGG | 0.401897 | 2_3:+2486071 | Msa0271180:CDS |
| ATATCATTCTCCTCAACAAT+AGG | 0.407208 | 2_3:-2486422 | None:intergenic |
| GAAAGCCTCATTCCCCTTTG+TGG | 0.425154 | 2_3:+2485888 | Msa0271180:CDS |
| AAGAGATTCTAGCTTAGAAA+TGG | 0.430571 | 2_3:-2485757 | None:intergenic |
| CGCATTGTCTTAACCTCTTG+TGG | 0.432545 | 2_3:-2485864 | None:intergenic |
| TTGCTTGTAAGAAGTGCAAA+AGG | 0.435002 | 2_3:+2486380 | Msa0271180:CDS |
| ATCTCTTAGGCCTTCAAAGC+AGG | 0.436005 | 2_3:+2485773 | Msa0271180:CDS |
| AGGGTGTTAACCTGCTTTGA+AGG | 0.438492 | 2_3:-2485783 | None:intergenic |
| ATAATTGAACTTAGTGGCAT+TGG | 0.438717 | 2_3:-2486095 | None:intergenic |
| TGTCTTAACCTCTTGTGGTA+AGG | 0.449698 | 2_3:-2485859 | None:intergenic |
| TATTGTTGAGGAGAATGATA+TGG | 0.461887 | 2_3:+2486424 | Msa0271180:CDS |
| GAGATATGAGAAGCTCTTGT+GGG | 0.466406 | 2_3:-2485713 | None:intergenic |
| GTTTGACTAAGTGAGTCAAA+AGG | 0.470350 | 2_3:-2485803 | None:intergenic |
| AACAAAATCCTCCAAGAGAA+TGG | 0.470902 | 2_3:+2486032 | Msa0271180:CDS |
| GATTTCAGCTTCAAAATTGA+AGG | 0.471295 | 2_3:-2485691 | None:intergenic |
| CTTTGCCACAAAGGGGAATG+AGG | 0.471873 | 2_3:-2485893 | None:intergenic |
| CTAGTTTAACATAGTTTCCA+TGG | 0.475050 | 2_3:-2485998 | None:intergenic |
| TCACAACACCATTCTCTTGG+AGG | 0.492086 | 2_3:-2486040 | None:intergenic |
| GTCCTTCTGCTTTGCCACAA+AGG | 0.493701 | 2_3:-2485902 | None:intergenic |
| TAACATAGTTTCCATGGTAA+GGG | 0.496507 | 2_3:-2485992 | None:intergenic |
| ACAAGATATTATGGAAGCTA+AGG | 0.511704 | 2_3:+2486244 | Msa0271180:CDS |
| TGGTAAGGCTTCGATCTCAA+TGG | 0.513240 | 2_3:-2485844 | None:intergenic |
| CCCCTTTGTGGCAAAGCAGA+AGG | 0.513729 | 2_3:+2485900 | Msa0271180:CDS |
| AAGGATTGGAAAGATGCCAT+TGG | 0.518413 | 2_3:-2485672 | None:intergenic |
| CGGATAAAGCACTTGAAAAG+AGG | 0.520656 | 2_3:+2486207 | Msa0271180:CDS |
| TTTGACTAAGTGAGTCAAAA+GGG | 0.523641 | 2_3:-2485802 | None:intergenic |
| TGGAAGCTAAGGAGAGGTTA+GGG | 0.528228 | 2_3:+2486255 | Msa0271180:CDS |
| AGAAAGCTAATGAGGTTGCT+AGG | 0.530826 | 2_3:+2486171 | Msa0271180:CDS |
| GCTTCGATCTCAATGGATGA+AGG | 0.532420 | 2_3:-2485837 | None:intergenic |
| TGAGATATGAGAAGCTCTTG+TGG | 0.550637 | 2_3:-2485714 | None:intergenic |
| ACATATAAGTAAGTATATGA+AGG | 0.556331 | 2_3:+2486346 | Msa0271180:CDS |
| ATAAGTAAGTATATGAAGGA+AGG | 0.558770 | 2_3:+2486350 | Msa0271180:CDS |
| GATCGAAGCCTTACCACAAG+AGG | 0.560482 | 2_3:+2485851 | Msa0271180:CDS |
| TGCTTGTAAGAAGTGCAAAA+GGG | 0.561089 | 2_3:+2486381 | Msa0271180:CDS |
| TGAGGTTGCTAGGAAGATTG+TGG | 0.568350 | 2_3:+2486181 | Msa0271180:CDS |
| TATTGATGAGAAAGCTAATG+AGG | 0.589845 | 2_3:+2486163 | Msa0271180:CDS |
| AGTAAGTATATGAAGGAAGG+TGG | 0.599425 | 2_3:+2486353 | Msa0271180:CDS |
| CTTCGATCTCAATGGATGAA+GGG | 0.607790 | 2_3:-2485836 | None:intergenic |
| TATATTGGCAACTCATCACA+TGG | 0.625569 | 2_3:+2486115 | Msa0271180:CDS |
| AACGGATGATGTTATCAACT+CGG | 0.627733 | 2_3:+2486478 | Msa0271180:CDS |
| CTGCACTTGTTGGTATGCGT+AGG | 0.635388 | 2_3:+2486300 | Msa0271180:CDS |
| CGATCTCAATGGATGAAGGG+AGG | 0.652262 | 2_3:-2485833 | None:intergenic |
| CCTTCTGCTTTGCCACAAAG+GGG | 0.652708 | 2_3:-2485900 | None:intergenic |
| GAGTTGATAACATCATCCGT+TGG | 0.686377 | 2_3:-2486476 | None:intergenic |
| ATATTATGGAAGCTAAGGAG+AGG | 0.694503 | 2_3:+2486249 | Msa0271180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTGTTAAATTTTTCAC+TGG | - | chr2_3:2485972-2485991 | None:intergenic | 20.0% |
| !! | ACATATAAGTAAGTATATGA+AGG | + | chr2_3:2486346-2486365 | Msa0271180:CDS | 20.0% |
| !!! | AAAAGTGTTAAATTTTTCAC+TGG | - | chr2_3:2485972-2485991 | None:intergenic | 20.0% |
| !! | ACATATAAGTAAGTATATGA+AGG | + | chr2_3:2486346-2486365 | Msa0271180:CDS | 20.0% |
| !! | GTTAAATTTTTCACTGGATT+TGG | - | chr2_3:2485966-2485985 | None:intergenic | 25.0% |
| ! | GCAAAAAAAGTAGCATTTAT+AGG | + | chr2_3:2486065-2486084 | Msa0271180:CDS | 25.0% |
| ! | ATTTGTGACACAAGATATTA+TGG | + | chr2_3:2486235-2486254 | Msa0271180:CDS | 25.0% |
| !!! | GCAATATGATTGCATTTTTT+TGG | + | chr2_3:2486277-2486296 | Msa0271180:CDS | 25.0% |
| !! | AGTGAAAAAGTGAAGATTTT+GGG | + | chr2_3:2486323-2486342 | Msa0271180:CDS | 25.0% |
| ! | ATAAGTAAGTATATGAAGGA+AGG | + | chr2_3:2486350-2486369 | Msa0271180:CDS | 25.0% |
| !!! | TTTTTTGTATCCTATTGTTG+AGG | + | chr2_3:2486412-2486431 | Msa0271180:CDS | 25.0% |
| !! | GAATGATATGGTAAATTTTG+AGG | + | chr2_3:2486436-2486455 | Msa0271180:CDS | 25.0% |
| !! | GTTAAATTTTTCACTGGATT+TGG | - | chr2_3:2485966-2485985 | None:intergenic | 25.0% |
| ! | GCAAAAAAAGTAGCATTTAT+AGG | + | chr2_3:2486065-2486084 | Msa0271180:CDS | 25.0% |
| ! | ATTTGTGACACAAGATATTA+TGG | + | chr2_3:2486235-2486254 | Msa0271180:CDS | 25.0% |
| !!! | GCAATATGATTGCATTTTTT+TGG | + | chr2_3:2486277-2486296 | Msa0271180:CDS | 25.0% |
| !! | AGTGAAAAAGTGAAGATTTT+GGG | + | chr2_3:2486323-2486342 | Msa0271180:CDS | 25.0% |
| ! | ATAAGTAAGTATATGAAGGA+AGG | + | chr2_3:2486350-2486369 | Msa0271180:CDS | 25.0% |
| !!! | TTTTTTGTATCCTATTGTTG+AGG | + | chr2_3:2486412-2486431 | Msa0271180:CDS | 25.0% |
| !! | GAATGATATGGTAAATTTTG+AGG | + | chr2_3:2486436-2486455 | Msa0271180:CDS | 25.0% |
| GATTTCAGCTTCAAAATTGA+AGG | - | chr2_3:2485694-2485713 | None:intergenic | 30.0% | |
| !! | AAGAGATTCTAGCTTAGAAA+TGG | - | chr2_3:2485760-2485779 | None:intergenic | 30.0% |
| TTTCTAAGCTAGAATCTCTT+AGG | + | chr2_3:2485760-2485779 | Msa0271180:CDS | 30.0% | |
| TTTGACTAAGTGAGTCAAAA+GGG | - | chr2_3:2485805-2485824 | None:intergenic | 30.0% | |
| TAACATAGTTTCCATGGTAA+GGG | - | chr2_3:2485995-2486014 | None:intergenic | 30.0% | |
| TTAACATAGTTTCCATGGTA+AGG | - | chr2_3:2485996-2486015 | None:intergenic | 30.0% | |
| CTAGTTTAACATAGTTTCCA+TGG | - | chr2_3:2486001-2486020 | None:intergenic | 30.0% | |
| AAAGTAGCATTTATAGGATC+TGG | + | chr2_3:2486071-2486090 | Msa0271180:CDS | 30.0% | |
| ATAATTGAACTTAGTGGCAT+TGG | - | chr2_3:2486098-2486117 | None:intergenic | 30.0% | |
| GCCACTAAGTTCAATTATAT+TGG | + | chr2_3:2486100-2486119 | Msa0271180:CDS | 30.0% | |
| GCCAATATAATTGAACTTAG+TGG | - | chr2_3:2486104-2486123 | None:intergenic | 30.0% | |
| TATTGATGAGAAAGCTAATG+AGG | + | chr2_3:2486163-2486182 | Msa0271180:CDS | 30.0% | |
| ACAAGATATTATGGAAGCTA+AGG | + | chr2_3:2486244-2486263 | Msa0271180:CDS | 30.0% | |
| ! | GAGTGAAAAAGTGAAGATTT+TGG | + | chr2_3:2486322-2486341 | Msa0271180:CDS | 30.0% |
| ATATCATTCTCCTCAACAAT+AGG | - | chr2_3:2486425-2486444 | None:intergenic | 30.0% | |
| TATTGTTGAGGAGAATGATA+TGG | + | chr2_3:2486424-2486443 | Msa0271180:CDS | 30.0% | |
| ! | GCTTACAATTTTTCATCCAA+CGG | + | chr2_3:2486460-2486479 | Msa0271180:CDS | 30.0% |
| GATTTCAGCTTCAAAATTGA+AGG | - | chr2_3:2485694-2485713 | None:intergenic | 30.0% | |
| !! | AAGAGATTCTAGCTTAGAAA+TGG | - | chr2_3:2485760-2485779 | None:intergenic | 30.0% |
| TTTCTAAGCTAGAATCTCTT+AGG | + | chr2_3:2485760-2485779 | Msa0271180:CDS | 30.0% | |
| TTTGACTAAGTGAGTCAAAA+GGG | - | chr2_3:2485805-2485824 | None:intergenic | 30.0% | |
| TAACATAGTTTCCATGGTAA+GGG | - | chr2_3:2485995-2486014 | None:intergenic | 30.0% | |
| TTAACATAGTTTCCATGGTA+AGG | - | chr2_3:2485996-2486015 | None:intergenic | 30.0% | |
| CTAGTTTAACATAGTTTCCA+TGG | - | chr2_3:2486001-2486020 | None:intergenic | 30.0% | |
| AAAGTAGCATTTATAGGATC+TGG | + | chr2_3:2486071-2486090 | Msa0271180:CDS | 30.0% | |
| ATAATTGAACTTAGTGGCAT+TGG | - | chr2_3:2486098-2486117 | None:intergenic | 30.0% | |
| GCCACTAAGTTCAATTATAT+TGG | + | chr2_3:2486100-2486119 | Msa0271180:CDS | 30.0% | |
| GCCAATATAATTGAACTTAG+TGG | - | chr2_3:2486104-2486123 | None:intergenic | 30.0% | |
| TATTGATGAGAAAGCTAATG+AGG | + | chr2_3:2486163-2486182 | Msa0271180:CDS | 30.0% | |
| ACAAGATATTATGGAAGCTA+AGG | + | chr2_3:2486244-2486263 | Msa0271180:CDS | 30.0% | |
| ! | GAGTGAAAAAGTGAAGATTT+TGG | + | chr2_3:2486322-2486341 | Msa0271180:CDS | 30.0% |
| ATATCATTCTCCTCAACAAT+AGG | - | chr2_3:2486425-2486444 | None:intergenic | 30.0% | |
| TATTGTTGAGGAGAATGATA+TGG | + | chr2_3:2486424-2486443 | Msa0271180:CDS | 30.0% | |
| ! | GCTTACAATTTTTCATCCAA+CGG | + | chr2_3:2486460-2486479 | Msa0271180:CDS | 30.0% |
| CAGCTTCAAAATTGAAGGAT+TGG | - | chr2_3:2485689-2485708 | None:intergenic | 35.0% | |
| GTTTGACTAAGTGAGTCAAA+AGG | - | chr2_3:2485806-2485825 | None:intergenic | 35.0% | |
| !!! | TTTTCACTGGATTTGGTGTT+TGG | - | chr2_3:2485959-2485978 | None:intergenic | 35.0% |
| ! | TTAACACTTTTCCCTTACCA+TGG | + | chr2_3:2485981-2486000 | Msa0271180:CDS | 35.0% |
| AACAAAATCCTCCAAGAGAA+TGG | + | chr2_3:2486032-2486051 | Msa0271180:CDS | 35.0% | |
| TATATTGGCAACTCATCACA+TGG | + | chr2_3:2486115-2486134 | Msa0271180:CDS | 35.0% | |
| ATATTATGGAAGCTAAGGAG+AGG | + | chr2_3:2486249-2486268 | Msa0271180:CDS | 35.0% | |
| !!! | ATTTTTTTGGCTGCACTTGT+TGG | + | chr2_3:2486290-2486309 | Msa0271180:CDS | 35.0% |
| AGTAAGTATATGAAGGAAGG+TGG | + | chr2_3:2486353-2486372 | Msa0271180:CDS | 35.0% | |
| ! | TTGCTTGTAAGAAGTGCAAA+AGG | + | chr2_3:2486380-2486399 | Msa0271180:CDS | 35.0% |
| ! | TGCTTGTAAGAAGTGCAAAA+GGG | + | chr2_3:2486381-2486400 | Msa0271180:CDS | 35.0% |
| AACGGATGATGTTATCAACT+CGG | + | chr2_3:2486478-2486497 | Msa0271180:CDS | 35.0% | |
| CAGCTTCAAAATTGAAGGAT+TGG | - | chr2_3:2485689-2485708 | None:intergenic | 35.0% | |
| GTTTGACTAAGTGAGTCAAA+AGG | - | chr2_3:2485806-2485825 | None:intergenic | 35.0% | |
| !!! | TTTTCACTGGATTTGGTGTT+TGG | - | chr2_3:2485959-2485978 | None:intergenic | 35.0% |
| ! | TTAACACTTTTCCCTTACCA+TGG | + | chr2_3:2485981-2486000 | Msa0271180:CDS | 35.0% |
| AACAAAATCCTCCAAGAGAA+TGG | + | chr2_3:2486032-2486051 | Msa0271180:CDS | 35.0% | |
| TATATTGGCAACTCATCACA+TGG | + | chr2_3:2486115-2486134 | Msa0271180:CDS | 35.0% | |
| ATATTATGGAAGCTAAGGAG+AGG | + | chr2_3:2486249-2486268 | Msa0271180:CDS | 35.0% | |
| !!! | ATTTTTTTGGCTGCACTTGT+TGG | + | chr2_3:2486290-2486309 | Msa0271180:CDS | 35.0% |
| AGTAAGTATATGAAGGAAGG+TGG | + | chr2_3:2486353-2486372 | Msa0271180:CDS | 35.0% | |
| ! | TTGCTTGTAAGAAGTGCAAA+AGG | + | chr2_3:2486380-2486399 | Msa0271180:CDS | 35.0% |
| ! | TGCTTGTAAGAAGTGCAAAA+GGG | + | chr2_3:2486381-2486400 | Msa0271180:CDS | 35.0% |
| AACGGATGATGTTATCAACT+CGG | + | chr2_3:2486478-2486497 | Msa0271180:CDS | 35.0% | |
| GAGATATGAGAAGCTCTTGT+GGG | - | chr2_3:2485716-2485735 | None:intergenic | 40.0% | |
| TGAGATATGAGAAGCTCTTG+TGG | - | chr2_3:2485717-2485736 | None:intergenic | 40.0% | |
| CTTCGATCTCAATGGATGAA+GGG | - | chr2_3:2485839-2485858 | None:intergenic | 40.0% | |
| TGTCTTAACCTCTTGTGGTA+AGG | - | chr2_3:2485862-2485881 | None:intergenic | 40.0% | |
| CATTCACAACACCATTCTCT+TGG | - | chr2_3:2486046-2486065 | None:intergenic | 40.0% | |
| AGAAAGCTAATGAGGTTGCT+AGG | + | chr2_3:2486171-2486190 | Msa0271180:CDS | 40.0% | |
| ! | CGGATAAAGCACTTGAAAAG+AGG | + | chr2_3:2486207-2486226 | Msa0271180:CDS | 40.0% |
| !! | GAGTTGATAACATCATCCGT+TGG | - | chr2_3:2486479-2486498 | None:intergenic | 40.0% |
| GAGATATGAGAAGCTCTTGT+GGG | - | chr2_3:2485716-2485735 | None:intergenic | 40.0% | |
| TGAGATATGAGAAGCTCTTG+TGG | - | chr2_3:2485717-2485736 | None:intergenic | 40.0% | |
| CTTCGATCTCAATGGATGAA+GGG | - | chr2_3:2485839-2485858 | None:intergenic | 40.0% | |
| TGTCTTAACCTCTTGTGGTA+AGG | - | chr2_3:2485862-2485881 | None:intergenic | 40.0% | |
| CATTCACAACACCATTCTCT+TGG | - | chr2_3:2486046-2486065 | None:intergenic | 40.0% | |
| AGAAAGCTAATGAGGTTGCT+AGG | + | chr2_3:2486171-2486190 | Msa0271180:CDS | 40.0% | |
| ! | CGGATAAAGCACTTGAAAAG+AGG | + | chr2_3:2486207-2486226 | Msa0271180:CDS | 40.0% |
| !! | GAGTTGATAACATCATCCGT+TGG | - | chr2_3:2486479-2486498 | None:intergenic | 40.0% |
| ATCTCTTAGGCCTTCAAAGC+AGG | + | chr2_3:2485773-2485792 | Msa0271180:CDS | 45.0% | |
| ! | AGGGTGTTAACCTGCTTTGA+AGG | - | chr2_3:2485786-2485805 | None:intergenic | 45.0% |
| GCTTCGATCTCAATGGATGA+AGG | - | chr2_3:2485840-2485859 | None:intergenic | 45.0% | |
| TGGTAAGGCTTCGATCTCAA+TGG | - | chr2_3:2485847-2485866 | None:intergenic | 45.0% | |
| CGCATTGTCTTAACCTCTTG+TGG | - | chr2_3:2485867-2485886 | None:intergenic | 45.0% | |
| TCCTTCTGCTTTGCCACAAA+GGG | - | chr2_3:2485904-2485923 | None:intergenic | 45.0% | |
| TCACAACACCATTCTCTTGG+AGG | - | chr2_3:2486043-2486062 | None:intergenic | 45.0% | |
| TGAGGTTGCTAGGAAGATTG+TGG | + | chr2_3:2486181-2486200 | Msa0271180:CDS | 45.0% | |
| TGCTAGGAAGATTGTGGCTT+CGG | + | chr2_3:2486187-2486206 | Msa0271180:CDS | 45.0% | |
| ATGGAAGCTAAGGAGAGGTT+AGG | + | chr2_3:2486254-2486273 | Msa0271180:CDS | 45.0% | |
| TGGAAGCTAAGGAGAGGTTA+GGG | + | chr2_3:2486255-2486274 | Msa0271180:CDS | 45.0% | |
| ATCTCTTAGGCCTTCAAAGC+AGG | + | chr2_3:2485773-2485792 | Msa0271180:CDS | 45.0% | |
| ! | AGGGTGTTAACCTGCTTTGA+AGG | - | chr2_3:2485786-2485805 | None:intergenic | 45.0% |
| GCTTCGATCTCAATGGATGA+AGG | - | chr2_3:2485840-2485859 | None:intergenic | 45.0% | |
| TGGTAAGGCTTCGATCTCAA+TGG | - | chr2_3:2485847-2485866 | None:intergenic | 45.0% | |
| CGCATTGTCTTAACCTCTTG+TGG | - | chr2_3:2485867-2485886 | None:intergenic | 45.0% | |
| TCCTTCTGCTTTGCCACAAA+GGG | - | chr2_3:2485904-2485923 | None:intergenic | 45.0% | |
| TCACAACACCATTCTCTTGG+AGG | - | chr2_3:2486043-2486062 | None:intergenic | 45.0% | |
| TGAGGTTGCTAGGAAGATTG+TGG | + | chr2_3:2486181-2486200 | Msa0271180:CDS | 45.0% | |
| TGCTAGGAAGATTGTGGCTT+CGG | + | chr2_3:2486187-2486206 | Msa0271180:CDS | 45.0% | |
| ATGGAAGCTAAGGAGAGGTT+AGG | + | chr2_3:2486254-2486273 | Msa0271180:CDS | 45.0% | |
| TGGAAGCTAAGGAGAGGTTA+GGG | + | chr2_3:2486255-2486274 | Msa0271180:CDS | 45.0% | |
| CGATCTCAATGGATGAAGGG+AGG | - | chr2_3:2485836-2485855 | None:intergenic | 50.0% | |
| GATCGAAGCCTTACCACAAG+AGG | + | chr2_3:2485851-2485870 | Msa0271180:CDS | 50.0% | |
| GAAAGCCTCATTCCCCTTTG+TGG | + | chr2_3:2485888-2485907 | Msa0271180:CDS | 50.0% | |
| CTTTGCCACAAAGGGGAATG+AGG | - | chr2_3:2485896-2485915 | None:intergenic | 50.0% | |
| CCTTCTGCTTTGCCACAAAG+GGG | - | chr2_3:2485903-2485922 | None:intergenic | 50.0% | |
| GTCCTTCTGCTTTGCCACAA+AGG | - | chr2_3:2485905-2485924 | None:intergenic | 50.0% | |
| ! | CTGCACTTGTTGGTATGCGT+AGG | + | chr2_3:2486300-2486319 | Msa0271180:CDS | 50.0% |
| CGATCTCAATGGATGAAGGG+AGG | - | chr2_3:2485836-2485855 | None:intergenic | 50.0% | |
| GATCGAAGCCTTACCACAAG+AGG | + | chr2_3:2485851-2485870 | Msa0271180:CDS | 50.0% | |
| GAAAGCCTCATTCCCCTTTG+TGG | + | chr2_3:2485888-2485907 | Msa0271180:CDS | 50.0% | |
| CTTTGCCACAAAGGGGAATG+AGG | - | chr2_3:2485896-2485915 | None:intergenic | 50.0% | |
| CCTTCTGCTTTGCCACAAAG+GGG | - | chr2_3:2485903-2485922 | None:intergenic | 50.0% | |
| GTCCTTCTGCTTTGCCACAA+AGG | - | chr2_3:2485905-2485924 | None:intergenic | 50.0% | |
| ! | CTGCACTTGTTGGTATGCGT+AGG | + | chr2_3:2486300-2486319 | Msa0271180:CDS | 50.0% |
| CCCCTTTGTGGCAAAGCAGA+AGG | + | chr2_3:2485900-2485919 | Msa0271180:CDS | 55.0% | |
| CCCCTTTGTGGCAAAGCAGA+AGG | + | chr2_3:2485900-2485919 | Msa0271180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2485675 | 2486529 | 2485675 | ID=Msa0271180;Name=Msa0271180 |
| chr2_3 | mRNA | 2485675 | 2486529 | 2485675 | ID=Msa0271180-mRNA-1;Parent=Msa0271180;Name=Msa0271180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|284 |
| chr2_3 | exon | 2485675 | 2486529 | 2485675 | ID=Msa0271180-mRNA-1:exon:1192;Parent=Msa0271180-mRNA-1 |
| chr2_3 | CDS | 2485675 | 2486529 | 2485675 | ID=Msa0271180-mRNA-1:cds;Parent=Msa0271180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
