AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0580210 MtrunA17_Chr8g0384171 95.906 635 25 1 1 634 1 635 0.0 1270
Msa0580210 MtrunA17_Chr8g0384181 68.882 662 163 9 1 634 16 662 0.0 920
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 137 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGCAGCTTTGGCATTT+TGG 0.161804 4_1:+85276137 Msa0580210:CDS
GCTCTCACTGTTTGTATTAT+TGG 0.196779 4_1:-85276121 None:intergenic
CATGCTTGGAGAAGGGAATT+TGG 0.204693 4_1:-85277055 None:intergenic
CTCAGATTCTTTCGAGGATT+TGG 0.229032 4_1:+85271342 Msa0580210:CDS
CTTCTAGTTAAACTATAAAA+TGG 0.259561 4_1:-85277107 None:intergenic
TTCCCTAAAATCTCAATGTT+TGG 0.262646 4_1:-85276244 None:intergenic
CTTGCGTTCACTTCTATTGA+TGG 0.265783 4_1:-85276314 None:intergenic
CAACGTAACTCTCACAAGTA+TGG 0.267344 4_1:-85272089 None:intergenic
ATCAGCCCACATAAGTTTCT+TGG 0.287833 4_1:+85273481 Msa0580210:CDS
ACCATTCCAATCTACTTTCT+TGG 0.289172 4_1:+85272337 Msa0580210:CDS
AAAAGAGGTAAGATACTTAA+TGG 0.295527 4_1:+85276346 Msa0580210:CDS
ATTCTTTCTCTCAAAATAGA+AGG 0.304064 4_1:-85272258 None:intergenic
GTAGAATTCAACTCTCCTTT+TGG 0.313407 4_1:+85271448 Msa0580210:CDS
TCCCTAAAATCTCAATGTTT+GGG 0.322790 4_1:-85276243 None:intergenic
TACTTCTTGAAGCCTCTTGA+TGG 0.336697 4_1:-85272220 None:intergenic
TGACAATATAGCTTGTCTTT+TGG 0.342303 4_1:-85276275 None:intergenic
TCAGCTTGTAGTAATGTAAC+TGG 0.345040 4_1:+85272483 Msa0580210:CDS
ATGCATAACTCAGAAAATAT+TGG 0.345574 4_1:-85271253 None:intergenic
CTTGGTGGCCCTGACTCTCC+AGG 0.347337 4_1:+85273499 Msa0580210:CDS
AACAGTATCCCTGGAGAGTC+AGG 0.353840 4_1:-85273508 None:intergenic
ATAGAGTTTGTATCTATATA+TGG 0.353882 4_1:+85276799 Msa0580210:CDS
ACTTTCTTGGAGGCAAAGTT+TGG 0.360742 4_1:+85272350 Msa0580210:CDS
ATGCTTGGAGAAGGGAATTT+GGG 0.382762 4_1:-85277054 None:intergenic
CGAGGTGGGTGTGCTTGTGC+TGG 0.389726 4_1:+85276415 Msa0580210:CDS
ACATTGTTAAACGATCTCTT+TGG 0.390512 4_1:+85276382 Msa0580210:CDS
TAGATTGGAATGGTGCTCAT+AGG 0.390775 4_1:-85272328 None:intergenic
TTGGCTGAGGTTGTAGAGAT+TGG 0.398331 4_1:+85272369 Msa0580210:CDS
GTGAGAGTTACGTTGGAAAC+AGG 0.400045 4_1:+85272097 Msa0580210:CDS
CCAGGATACATTGTACTTAG+AGG 0.405453 4_1:+85276066 Msa0580210:intron
GGGTTATGTTGGTGTAAAAC+CGG 0.407675 4_1:+85276711 Msa0580210:intron
ACAAACAGTGAGAGCAGCTT+TGG 0.409550 4_1:+85276129 Msa0580210:CDS
GCACTCATGCTATGCGGCTC+GGG 0.419195 4_1:+85272186 Msa0580210:CDS
AGCATGCAAAACCTTTGTAT+TGG 0.421268 4_1:-85272545 None:intergenic
AAAATCTCAATGTTTGGGTT+GGG 0.422552 4_1:-85276238 None:intergenic
TTGCCTCCAAGAAAGTAGAT+TGG 0.431939 4_1:-85272343 None:intergenic
CTCACTGTTTGTATTATTGG+AGG 0.439527 4_1:-85276118 None:intergenic
TAAAATCTCAATGTTTGGGT+TGG 0.441881 4_1:-85276239 None:intergenic
ATATATAGATACAAACTCTA+TGG 0.442580 4_1:-85276797 None:intergenic
GCCTTGGTAAAGAAGAAAGA+TGG 0.443504 4_1:+85272289 Msa0580210:CDS
CCCTCCTCATCCATGTAGTA+AGG 0.449991 4_1:-85276754 None:intergenic
AAGAGGCTTCAAGAAGTAAT+GGG 0.454316 4_1:+85272225 Msa0580210:CDS
TATTCACTCAGATTCTTTCG+AGG 0.454737 4_1:+85271336 Msa0580210:CDS
TTCGAGGATTTGGTGGAGAT+AGG 0.455189 4_1:+85271352 Msa0580210:CDS
GAGATTGGCCTTGATGATCA+AGG 0.455541 4_1:+85272384 Msa0580210:CDS
GTAGAAAGGCAGAAGATGTT+TGG 0.455887 4_1:-85271542 None:intergenic
CGTCAATAGCTTCAATGAAA+AGG 0.456104 4_1:+85273600 Msa0580210:CDS
GTGGAGATTGACATGAGATC+GGG 0.457650 4_1:+85273430 Msa0580210:CDS
TTATTGACCTTGTTTCTGCT+TGG 0.461439 4_1:-85271280 None:intergenic
TATGCTGATCACACGGCCTC+AGG 0.461915 4_1:+85271487 Msa0580210:CDS
GATACCAATCGACCCTTGTT+GGG 0.467394 4_1:+85272453 Msa0580210:CDS
TGCACTCATGCTATGCGGCT+CGG 0.467742 4_1:+85272185 Msa0580210:CDS
CAAGAGGCTTCAAGAAGTAA+TGG 0.469088 4_1:+85272224 Msa0580210:CDS
GTACCACCTCCACAAGTTGA+TGG 0.471883 4_1:-85273568 None:intergenic
CCACTGATTCATTACATGGC+AGG 0.474462 4_1:-85271381 None:intergenic
CTTAGAGGACATAGAGGAAA+GGG 0.479020 4_1:+85276081 Msa0580210:CDS
TGTGCTTGTGCTGGACCTTA+CGG 0.484279 4_1:+85276424 Msa0580210:CDS
CGCAAGACTAAGAACAAAAG+AGG 0.484458 4_1:+85276331 Msa0580210:CDS
TTGGAGGCAAAGTTTGGCTG+AGG 0.485112 4_1:+85272356 Msa0580210:CDS
ATTCCAATCTACTTTCTTGG+AGG 0.488539 4_1:+85272340 Msa0580210:CDS
AATGTAAGAATTAAATCAGT+TGG 0.490879 4_1:+85276979 Msa0580210:CDS
TTTATTTAGTGGTCCGTATG+TGG 0.491567 4_1:+85273411 Msa0580210:intron
TCTTCCACTGATTCATTACA+TGG 0.491814 4_1:-85271385 None:intergenic
TTGTTCATTAACAGTATCCC+TGG 0.497313 4_1:-85273517 None:intergenic
ACAAGTTTCCTTGTACCAAA+AGG 0.497839 4_1:-85271463 None:intergenic
AGATTCTTTCGAGGATTTGG+TGG 0.498052 4_1:+85271345 Msa0580210:CDS
AAACATCTTCTGCCTTTCTA+CGG 0.499154 4_1:+85271544 Msa0580210:CDS
ACATCTGGACAGACCATGCT+TGG 0.501898 4_1:-85277069 None:intergenic
GAAAGAATGTTGAGGTGCCT+TGG 0.502619 4_1:+85272273 Msa0580210:CDS
AGAACACTGGGATCTACATC+TGG 0.503224 4_1:-85277084 None:intergenic
TCCTTACTACATGGATGAGG+AGG 0.512524 4_1:+85276753 Msa0580210:CDS
AGATTGGAATGGTGCTCATA+GGG 0.519242 4_1:-85272327 None:intergenic
GGACAGACCATGCTTGGAGA+AGG 0.520334 4_1:-85277063 None:intergenic
AAAGCTTGAAACTCTGATGA+AGG 0.520437 4_1:+85276885 Msa0580210:CDS
GACATAGAGGAAAGGGAAAA+CGG 0.520769 4_1:+85276088 Msa0580210:CDS
TGGTTGAGGTCACAAATCAT+TGG 0.521950 4_1:+85271418 Msa0580210:CDS
AGATCCCAACAAGGGTCGAT+TGG 0.524725 4_1:-85272457 None:intergenic
CAAATTCCCTTCTCCAAGCA+TGG 0.525202 4_1:+85277056 Msa0580210:CDS
AATCAGTTGGTAAGATGAGA+AGG 0.526323 4_1:+85276992 Msa0580210:CDS
AACTATAAAATGGAGAACAC+TGG 0.538606 4_1:-85277097 None:intergenic
AGATACCAATCGACCCTTGT+TGG 0.539683 4_1:+85272452 Msa0580210:CDS
AATATGTCAATACCGTAGAA+AGG 0.540918 4_1:-85271556 None:intergenic
TTGGTGGCCCTGACTCTCCA+GGG 0.546252 4_1:+85273500 Msa0580210:CDS
GCTATGCGGCTCGGGCACAA+CGG 0.546918 4_1:+85272194 Msa0580210:CDS
CAGATACACGAGCAATTGCT+AGG 0.548273 4_1:+85272514 Msa0580210:CDS
TGTGGAGATTGACATGAGAT+CGG 0.551632 4_1:+85273429 Msa0580210:CDS
TTCTTTCTCTCAAAATAGAA+GGG 0.555590 4_1:-85272257 None:intergenic
AACGTAACTCTCACAAGTAT+GGG 0.555777 4_1:-85272088 None:intergenic
CCTCCATCAACTTGTGGAGG+TGG 0.555833 4_1:+85273565 Msa0580210:CDS
GTTTAACAATGTTGCAACAA+AGG 0.556553 4_1:-85276371 None:intergenic
CTTATGTGGGCTGATGAAAA+CGG 0.557601 4_1:-85273473 None:intergenic
TGATCAAGGGTTGCTTGACA+TGG 0.558737 4_1:+85272398 Msa0580210:CDS
TGACGACGGTAGAACAAACT+TGG 0.559748 4_1:+85271218 Msa0580210:CDS
AATTGAAGTTGTATAGCGGA+AGG 0.567777 4_1:-85276831 None:intergenic
CCTTACTACATGGATGAGGA+GGG 0.568463 4_1:+85276754 Msa0580210:CDS
CTCTTGAATAGCTGATCTAA+CGG 0.570691 4_1:-85276485 None:intergenic
GACAGACCATGCTTGGAGAA+GGG 0.571080 4_1:-85277062 None:intergenic
CCCATCTTTCTTCTTTACCA+AGG 0.575313 4_1:-85272290 None:intergenic
GGGCCACCAAGAAACTTATG+TGG 0.578448 4_1:-85273487 None:intergenic
AGCTTTGAAGCTACAACTTG+AGG 0.579642 4_1:+85272422 Msa0580210:CDS
AGCCCACATAAGTTTCTTGG+TGG 0.581206 4_1:+85273484 Msa0580210:CDS
CATAGCTCCAAGCAGAAACA+AGG 0.584497 4_1:+85271273 Msa0580210:CDS
CTCATGTCAATCTCCACATA+CGG 0.586246 4_1:-85273424 None:intergenic
CAAGCAACCCTTGATCATCA+AGG 0.588411 4_1:-85272392 None:intergenic
ACTATAAAATGGAGAACACT+GGG 0.591554 4_1:-85277096 None:intergenic
CGTTAGATCAGCTATTCAAG+AGG 0.592457 4_1:+85276486 Msa0580210:CDS
TCACCTCCATCAACTTGTGG+AGG 0.592933 4_1:+85273562 Msa0580210:CDS
GCACAACGGCAGCCATCAAG+AGG 0.593525 4_1:+85272208 Msa0580210:CDS
CCTGCCATGTAATGAATCAG+TGG 0.593664 4_1:+85271381 Msa0580210:CDS
TTGTATCTATATATGGTCAA+CGG 0.594729 4_1:+85276806 Msa0580210:CDS
AGATTGGCCTTGATGATCAA+GGG 0.600995 4_1:+85272385 Msa0580210:CDS
TTCAAATTGAAGTTGTATAG+CGG 0.601025 4_1:-85276835 None:intergenic
AGGCTTATTCACCAATACAA+AGG 0.604707 4_1:+85272534 Msa0580210:CDS
TTGGAATACAAGCTCGAGGT+GGG 0.609272 4_1:+85276401 Msa0580210:CDS
TTGAGCAAATCATGTCCGTA+AGG 0.609814 4_1:-85276439 None:intergenic
CATACTTGTGAGAGTTACGT+TGG 0.611551 4_1:+85272090 Msa0580210:CDS
CCTTGGTAAAGAAGAAAGAT+GGG 0.611773 4_1:+85272290 Msa0580210:CDS
AAACTAACTCTAGTCCATCC+CGG 0.622757 4_1:-85276730 None:intergenic
ACTTAGAGGACATAGAGGAA+AGG 0.629801 4_1:+85276080 Msa0580210:CDS
ACAGTATCCCTGGAGAGTCA+GGG 0.631162 4_1:-85273507 None:intergenic
TCCAAGAAAGTAGATTGGAA+TGG 0.634807 4_1:-85272338 None:intergenic
GGTTATGTTGGTGTAAAACC+GGG 0.635004 4_1:+85276712 Msa0580210:CDS
CTCTTTGGAATACAAGCTCG+AGG 0.637842 4_1:+85276397 Msa0580210:CDS
GAAGTGAAGACTGCGACCTG+AGG 0.647793 4_1:-85271503 None:intergenic
TGGAGATTGACATGAGATCG+GGG 0.651246 4_1:+85273431 Msa0580210:CDS
AGCTGAGAAAGATCCCAACA+AGG 0.657205 4_1:-85272466 None:intergenic
ACTTGTCTATGCTGATCACA+CGG 0.658126 4_1:+85271480 Msa0580210:CDS
TTTGGAATACAAGCTCGAGG+TGG 0.658681 4_1:+85276400 Msa0580210:CDS
GGCCACCAAGAAACTTATGT+GGG 0.661192 4_1:-85273486 None:intergenic
ATGTTGGTGTAAAACCGGGA+TGG 0.664075 4_1:+85276716 Msa0580210:CDS
AATTAACTTCATGTTGACGA+CGG 0.669839 4_1:+85271204 None:intergenic
GCTGAGAAAGATCCCAACAA+GGG 0.674394 4_1:-85272465 None:intergenic
ATTGTACTTAGAGGACATAG+AGG 0.684016 4_1:+85276075 Msa0580210:CDS
GGAGATTGACATGAGATCGG+GGG 0.699559 4_1:+85273432 Msa0580210:CDS
CCACCTCCACAAGTTGATGG+AGG 0.701065 4_1:-85273565 None:intergenic
TGGTAAAGAAGAAAGATGGG+TGG 0.706827 4_1:+85272293 Msa0580210:CDS
GACGATGCACTCATGCTATG+CGG 0.716236 4_1:+85272180 Msa0580210:CDS
ATAGAGGAAAGGGAAAACGG+TGG 0.801953 4_1:+85276091 Msa0580210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCGTATAAAAAAATAAATT+AGG + chr4_1:85272630-85272649 Msa0580210:intron 10.0%
!! TCGTATAAAAAAATAAATTA+GGG + chr4_1:85272631-85272650 Msa0580210:intron 10.0%
!! ATCTATGTTAATAAATTATA+TGG - chr4_1:85272828-85272847 None:intergenic 10.0%
!!! TTATTAATTTGTTTATTTAG+TGG + chr4_1:85273400-85273419 Msa0580210:intron 10.0%
!!! TTTTTTGTTAGAAATTTAAA+AGG + chr4_1:85273632-85273651 Msa0580210:intron 10.0%
!!! ATCATTTTTGTTATAATTTT+TGG - chr4_1:85273682-85273701 None:intergenic 10.0%
!!! TATACTATATATTTTTTTAG+GGG + chr4_1:85273969-85273988 Msa0580210:intron 10.0%
!!! ATTTTAATCTTAAATCAATA+AGG + chr4_1:85274174-85274193 Msa0580210:intron 10.0%
!!! AAAATGAATATTTTTTTTTG+TGG - chr4_1:85274394-85274413 None:intergenic 10.0%
!!! ATTTAAAAAAAAAAAGCATT+TGG + chr4_1:85274577-85274596 Msa0580210:intron 10.0%
!! AACACATAATATTAATTATT+CGG + chr4_1:85275675-85275694 Msa0580210:intron 10.0%
!! TTAAAAAAAGTTGTTTAAAA+AGG - chr4_1:85275911-85275930 None:intergenic 10.0%
!!! TTATTTATTGTTTTTAAACA+GGG + chr4_1:85276691-85276710 Msa0580210:intron 10.0%
!!! ATATGTATCTCTTTTTATTA+CGG + chr4_1:85271819-85271838 Msa0580210:intron 15.0%
!!! GGAAAATTTTCATTATTTTA+TGG + chr4_1:85271990-85272009 Msa0580210:intron 15.0%
!!! AGATTTAAAATAATGGTAAA+AGG + chr4_1:85272658-85272677 Msa0580210:intron 15.0%
!! ATTTGAAAATGAACTAAATT+TGG + chr4_1:85272798-85272817 Msa0580210:intron 15.0%
!! TTTGAAAATGAACTAAATTT+GGG + chr4_1:85272799-85272818 Msa0580210:intron 15.0%
!! TACATATAATATGATCAAAA+TGG - chr4_1:85273295-85273314 None:intergenic 15.0%
!!! TTTTTTTGTCAAGTTTATTT+TGG + chr4_1:85273339-85273358 Msa0580210:intron 15.0%
!! AAACCATATAAAAAAATTAG+TGG - chr4_1:85273896-85273915 None:intergenic 15.0%
!!! ATGATGTAACATATTTTTTT+GGG - chr4_1:85274057-85274076 None:intergenic 15.0%
!! AATAAAAAAAAGATTAAGAC+CGG - chr4_1:85274560-85274579 None:intergenic 15.0%
!!! CTTTATTTTAGATTTCATTT+TGG - chr4_1:85274653-85274672 None:intergenic 15.0%
!!! TTTTAGACTTAATTATGTTT+AGG - chr4_1:85274748-85274767 None:intergenic 15.0%
!!! TAAAATATACAAGTTGAAAT+AGG + chr4_1:85274763-85274782 Msa0580210:intron 15.0%
!!! TATTTTAAAGATCAAATTAG+TGG - chr4_1:85275306-85275325 None:intergenic 15.0%
!! AATATTATGTGTTTAATCAT+TGG - chr4_1:85275668-85275687 None:intergenic 15.0%
!! CATATTTGGAAAATTAATAT+TGG + chr4_1:85276575-85276594 Msa0580210:intron 15.0%
!! ATGTTTAACATGTTAAAAAA+AGG - chr4_1:85276664-85276683 None:intergenic 15.0%
!!! CTTATTTATTGTTTTTAAAC+AGG + chr4_1:85276690-85276709 Msa0580210:intron 15.0%
!!! CATATTTGGTTTTTGTTTTT+CGG + chr4_1:85271573-85271592 Msa0580210:intron 20.0%
!!! AATTTGTGAATATCTTTTAG+GGG - chr4_1:85271888-85271907 None:intergenic 20.0%
!!! CAATTTGTGAATATCTTTTA+GGG - chr4_1:85271889-85271908 None:intergenic 20.0%
!!! TCAATTTGTGAATATCTTTT+AGG - chr4_1:85271890-85271909 None:intergenic 20.0%
!!! TAAGCATTTTTTAATGTACT+TGG - chr4_1:85272148-85272167 None:intergenic 20.0%
!! AAGTACATTAAAAAATGCTT+AGG + chr4_1:85272147-85272166 Msa0580210:CDS 20.0%
!! AAGGTATGCATAATTATTTA+GGG + chr4_1:85272581-85272600 Msa0580210:intron 20.0%
!! TTGAAAATGAACTAAATTTG+GGG + chr4_1:85272800-85272819 Msa0580210:intron 20.0%
!!! TATATCATACTCTTTTTTTG+CGG - chr4_1:85272937-85272956 None:intergenic 20.0%
!!! CTACAATATTTTTGTCATTT+AGG + chr4_1:85273077-85273096 Msa0580210:intron 20.0%
!!! ACATCTACATTTTTTTATGA+AGG - chr4_1:85273750-85273769 None:intergenic 20.0%
!! CAAATAACTTTGAATGATTT+AGG + chr4_1:85273795-85273814 Msa0580210:intron 20.0%
!!! ATATTAAGCCTGTTTTAATA+AGG - chr4_1:85273869-85273888 None:intergenic 20.0%
!!! TTGCCACTAATTTTTTTATA+TGG + chr4_1:85273890-85273909 Msa0580210:intron 20.0%
!!! TGATGTAACATATTTTTTTG+GGG - chr4_1:85274056-85274075 None:intergenic 20.0%
!!! GATGATGTAACATATTTTTT+TGG - chr4_1:85274058-85274077 None:intergenic 20.0%
!! AAAAATATGTTACATCATCT+TGG + chr4_1:85274059-85274078 Msa0580210:intron 20.0%
!!! AACATCATTTTTTTAACGTA+TGG - chr4_1:85274264-85274283 None:intergenic 20.0%
!!! ATGAATATTTTTTTTTGTGG+TGG - chr4_1:85274391-85274410 None:intergenic 20.0%
!!! GTCATAGTTTTATTTTATTG+TGG - chr4_1:85274627-85274646 None:intergenic 20.0%
!!! TCTAAAATAAAGTTTAGTAC+TGG + chr4_1:85274661-85274680 Msa0580210:intron 20.0%
!!! TACTGGTATGTTTTTTTTAA+GGG + chr4_1:85274678-85274697 Msa0580210:intron 20.0%
!!! CTTAATTATGTTTAGGTTTT+TGG - chr4_1:85274741-85274760 None:intergenic 20.0%
!!! GATGATTTTAAGTTTCTTTT+TGG - chr4_1:85274884-85274903 None:intergenic 20.0%
!! AATATAACCCATTAAATCAA+CGG + chr4_1:85274976-85274995 Msa0580210:intron 20.0%
!!! TTTATTTCCGTTGATTTAAT+GGG - chr4_1:85274986-85275005 None:intergenic 20.0%
!! CAAATTAAACTTTGATATCA+AGG + chr4_1:85275023-85275042 Msa0580210:intron 20.0%
!! ATCAAGAATTCAATATATGA+TGG + chr4_1:85275107-85275126 Msa0580210:intron 20.0%
!! TCAAGAATTCAATATATGAT+GGG + chr4_1:85275108-85275127 Msa0580210:intron 20.0%
!!! TATCACTTCTTTTTTTTGTT+TGG + chr4_1:85275743-85275762 Msa0580210:intron 20.0%
!! ACAAAAATGTCGAAATTATT+AGG - chr4_1:85275854-85275873 None:intergenic 20.0%
!! ATATATAGATACAAACTCTA+TGG - chr4_1:85276800-85276819 None:intergenic 20.0%
!! ATAGAGTTTGTATCTATATA+TGG + chr4_1:85276799-85276818 Msa0580210:CDS 20.0%
!! TACAACTTCAATTTGAAAAA+TGG + chr4_1:85276841-85276860 Msa0580210:CDS 20.0%
!! AATGTAAGAATTAAATCAGT+TGG + chr4_1:85276979-85276998 Msa0580210:CDS 20.0%
! ATGCATAACTCAGAAAATAT+TGG - chr4_1:85271256-85271275 None:intergenic 25.0%
!!! ACACATATTTGGTTTGTTAT+AGG + chr4_1:85271600-85271619 Msa0580210:intron 25.0%
! GATACATATACGTAGTTAAA+AGG - chr4_1:85271808-85271827 None:intergenic 25.0%
!! TCTTTTTATTACGGTAACTA+CGG + chr4_1:85271828-85271847 Msa0580210:intron 25.0%
! TACATTAAAAAATGCTTAGG+TGG + chr4_1:85272150-85272169 Msa0580210:CDS 25.0%
! TTCTTTCTCTCAAAATAGAA+GGG - chr4_1:85272260-85272279 None:intergenic 25.0%
! ATTCTTTCTCTCAAAATAGA+AGG - chr4_1:85272261-85272280 None:intergenic 25.0%
! CAAGGTATGCATAATTATTT+AGG + chr4_1:85272580-85272599 Msa0580210:intron 25.0%
!! GGGACAAAGATTTAAAATAA+TGG + chr4_1:85272651-85272670 Msa0580210:intron 25.0%
!! ATTTAATTTACACAAACGAC+AGG - chr4_1:85272720-85272739 None:intergenic 25.0%
! GTCGTTTGTGTAAATTAAAT+AGG + chr4_1:85272720-85272739 Msa0580210:intron 25.0%
! AAATTAAATAGGAGAGTGAT+TGG + chr4_1:85272731-85272750 Msa0580210:intron 25.0%
! TGAAAATGAACTAAATTTGG+GGG + chr4_1:85272801-85272820 Msa0580210:intron 25.0%
!!! GCAAAATTTTTAAAGTTACC+TGG + chr4_1:85272859-85272878 Msa0580210:intron 25.0%
!!! ATATCATACTCTTTTTTTGC+GGG - chr4_1:85272936-85272955 None:intergenic 25.0%
!!! TTTTTTGCACAAGAATATTC+TGG + chr4_1:85273004-85273023 Msa0580210:intron 25.0%
! TTGTAGAAAATTTAGACCTT+AGG - chr4_1:85273040-85273059 None:intergenic 25.0%
!! TGTCATTTAGGTTATAGTTT+AGG + chr4_1:85273089-85273108 Msa0580210:intron 25.0%
! TTCATGAATTGATATGCTTT+AGG - chr4_1:85273170-85273189 None:intergenic 25.0%
! ATTAGGGACGAATATATATA+CGG - chr4_1:85273221-85273240 None:intergenic 25.0%
! TTAGCAAGCTACTAAAATTA+GGG - chr4_1:85273237-85273256 None:intergenic 25.0%
! ATTAGCAAGCTACTAAAATT+AGG - chr4_1:85273238-85273257 None:intergenic 25.0%
!!! TTCATTTTTTTTTTGCCACT+AGG + chr4_1:85274148-85274167 Msa0580210:intron 25.0%
!!! TCATTTTTTTTTTGCCACTA+GGG + chr4_1:85274149-85274168 Msa0580210:intron 25.0%
!!! GTACTGGTATGTTTTTTTTA+AGG + chr4_1:85274677-85274696 Msa0580210:intron 25.0%
!!! CTTTTTTGATAGATATGTGA+TGG - chr4_1:85274833-85274852 None:intergenic 25.0%
!!! TTTTAAGTTTCTTTTTGGCA+GGG - chr4_1:85274879-85274898 None:intergenic 25.0%
!!! ATTTTAAGTTTCTTTTTGGC+AGG - chr4_1:85274880-85274899 None:intergenic 25.0%
!!! GTTTATTTCCGTTGATTTAA+TGG - chr4_1:85274987-85275006 None:intergenic 25.0%
!! CTCTAAAAAAAAATCAACCT+AGG - chr4_1:85275060-85275079 None:intergenic 25.0%
! ATGGGATGTTATAATGAATA+CGG + chr4_1:85275126-85275145 Msa0580210:intron 25.0%
! GTGTGCAGTAATTAAATATT+CGG - chr4_1:85275247-85275266 None:intergenic 25.0%
! ATCTCTCACATCTTAATAAT+AGG + chr4_1:85275335-85275354 Msa0580210:intron 25.0%
! TCTCTCACATCTTAATAATA+GGG + chr4_1:85275336-85275355 Msa0580210:intron 25.0%
!!! GGGACTAAATTTTGATAATA+TGG + chr4_1:85275356-85275375 Msa0580210:intron 25.0%
!! GTTGATTTAAACATCATTTG+AGG - chr4_1:85276014-85276033 None:intergenic 25.0%
! AAAAGAGGTAAGATACTTAA+TGG + chr4_1:85276346-85276365 Msa0580210:CDS 25.0%
! TTATTACGAACACACATATT+TGG + chr4_1:85276561-85276580 Msa0580210:intron 25.0%
! TTGTATCTATATATGGTCAA+CGG + chr4_1:85276806-85276825 Msa0580210:CDS 25.0%
! TTCAAATTGAAGTTGTATAG+CGG - chr4_1:85276838-85276857 None:intergenic 25.0%
!!! AATGATTTTTTCAAAGCAGA+TGG + chr4_1:85276949-85276968 Msa0580210:CDS 25.0%
GAGTGAATATTGCAAAAATC+AGG - chr4_1:85271325-85271344 None:intergenic 30.0%
! AAGAAAAACTATGTTGGTTG+AGG + chr4_1:85271404-85271423 Msa0580210:CDS 30.0%
AATATGTCAATACCGTAGAA+AGG - chr4_1:85271559-85271578 None:intergenic 30.0%
!! TTCTACGGTATTGACATATT+TGG + chr4_1:85271559-85271578 Msa0580210:intron 30.0%
! TTTTCGGTTACACACATATT+TGG + chr4_1:85271589-85271608 Msa0580210:intron 30.0%
CAAATTGAATTAGTACCAAG+AGG + chr4_1:85271902-85271921 Msa0580210:intron 30.0%
TAGCACTTATCACAAATTAC+AGG + chr4_1:85271968-85271987 Msa0580210:intron 30.0%
AGCACTTATCACAAATTACA+GGG + chr4_1:85271969-85271988 Msa0580210:intron 30.0%
TAATTCAGTACAGCTGTATA+TGG + chr4_1:85272030-85272049 Msa0580210:intron 30.0%
TATGAAGCTATGCTATATGT+AGG + chr4_1:85272060-85272079 Msa0580210:intron 30.0%
ATTAAAAAATGCTTAGGTGG+TGG + chr4_1:85272153-85272172 Msa0580210:CDS 30.0%
TTAAAAAATGCTTAGGTGGT+GGG + chr4_1:85272154-85272173 Msa0580210:CDS 30.0%
!! TTTTGAGAGAAAGAATGTTG+AGG + chr4_1:85272265-85272284 Msa0580210:CDS 30.0%
! TATTTAGGGTTGTCATTAAC+TGG + chr4_1:85272595-85272614 Msa0580210:intron 30.0%
! ATTTAGGGTTGTCATTAACT+GGG + chr4_1:85272596-85272615 Msa0580210:intron 30.0%
! TGAAGAGTTAATTTTCAACC+AGG - chr4_1:85272880-85272899 None:intergenic 30.0%
! TTCTGGATTTGAAATTCCTA+AGG + chr4_1:85273021-85273040 Msa0580210:intron 30.0%
! AATTGATATGCTTTAGGCAA+AGG - chr4_1:85273164-85273183 None:intergenic 30.0%
GATGTCTTAGAAGTTAGATT+AGG + chr4_1:85273765-85273784 Msa0580210:intron 30.0%
! TCCTTCATATTTTATTGCAC+CGG + chr4_1:85273823-85273842 Msa0580210:intron 30.0%
! ATTGTACGCCTTATTAAAAC+AGG + chr4_1:85273858-85273877 Msa0580210:intron 30.0%
TGATGTAACATTCAGAATGT+GGG - chr4_1:85274028-85274047 None:intergenic 30.0%
ATGATGTAACATTCAGAATG+TGG - chr4_1:85274029-85274048 None:intergenic 30.0%
!!! CATTTTTTTTTTGCCACTAG+GGG + chr4_1:85274150-85274169 Msa0580210:intron 30.0%
ACAACACATGATAATATGCA+AGG + chr4_1:85274348-85274367 Msa0580210:intron 30.0%
!!! ATATTTTTTTTTGTGGTGGC+CGG - chr4_1:85274387-85274406 None:intergenic 30.0%
TCTATAACAAACTAGAATGC+CGG + chr4_1:85274538-85274557 Msa0580210:intron 30.0%
GCAGTAATTAAATATTCGGT+TGG - chr4_1:85275243-85275262 None:intergenic 30.0%
AAATGTCGAAATTATTAGGC+CGG - chr4_1:85275850-85275869 None:intergenic 30.0%
AAAAATCCGGCAAATTATCA+TGG + chr4_1:85275943-85275962 Msa0580210:intron 30.0%
AAAATCCGGCAAATTATCAT+GGG + chr4_1:85275944-85275963 Msa0580210:intron 30.0%
GATTTAAACATCATTTGAGG+CGG - chr4_1:85276011-85276030 None:intergenic 30.0%
! AAAATCTCAATGTTTGGGTT+GGG - chr4_1:85276241-85276260 None:intergenic 30.0%
TAAAATCTCAATGTTTGGGT+TGG - chr4_1:85276242-85276261 None:intergenic 30.0%
! AACCCAAACATTGAGATTTT+AGG + chr4_1:85276241-85276260 Msa0580210:CDS 30.0%
! ACCCAAACATTGAGATTTTA+GGG + chr4_1:85276242-85276261 Msa0580210:CDS 30.0%
TCCCTAAAATCTCAATGTTT+GGG - chr4_1:85276246-85276265 None:intergenic 30.0%
TTCCCTAAAATCTCAATGTT+TGG - chr4_1:85276247-85276266 None:intergenic 30.0%
!! TGACAATATAGCTTGTCTTT+TGG - chr4_1:85276278-85276297 None:intergenic 30.0%
GTTTAACAATGTTGCAACAA+AGG - chr4_1:85276374-85276393 None:intergenic 30.0%
ACATTGTTAAACGATCTCTT+TGG + chr4_1:85276382-85276401 Msa0580210:CDS 30.0%
! GTTTTTAAACAGGGTTATGT+TGG + chr4_1:85276700-85276719 Msa0580210:intron 30.0%
!!! AGTTAGTTTTCCTTACTACA+TGG + chr4_1:85276744-85276763 Msa0580210:CDS 30.0%
TCAATTTGAAAAATGGCAAC+TGG + chr4_1:85276848-85276867 Msa0580210:CDS 30.0%
ACTATAAAATGGAGAACACT+GGG - chr4_1:85277099-85277118 None:intergenic 30.0%
AACTATAAAATGGAGAACAC+TGG - chr4_1:85277100-85277119 None:intergenic 30.0%
!! TTATTGACCTTGTTTCTGCT+TGG - chr4_1:85271283-85271302 None:intergenic 35.0%
GCAAAAATCAGGAGATGTTT+CGG - chr4_1:85271314-85271333 None:intergenic 35.0%
TATTCACTCAGATTCTTTCG+AGG + chr4_1:85271336-85271355 Msa0580210:CDS 35.0%
!! TCTTCCACTGATTCATTACA+TGG - chr4_1:85271388-85271407 None:intergenic 35.0%
CAGTGGAAGAAAAACTATGT+TGG + chr4_1:85271398-85271417 Msa0580210:CDS 35.0%
! GTAGAATTCAACTCTCCTTT+TGG + chr4_1:85271448-85271467 Msa0580210:CDS 35.0%
ACAAGTTTCCTTGTACCAAA+AGG - chr4_1:85271466-85271485 None:intergenic 35.0%
AAACATCTTCTGCCTTTCTA+CGG + chr4_1:85271544-85271563 Msa0580210:CDS 35.0%
AACGTAACTCTCACAAGTAT+GGG - chr4_1:85272091-85272110 None:intergenic 35.0%
TAAAAAATGCTTAGGTGGTG+GGG + chr4_1:85272155-85272174 Msa0580210:CDS 35.0%
AAGAGGCTTCAAGAAGTAAT+GGG + chr4_1:85272225-85272244 Msa0580210:CDS 35.0%
CCTTGGTAAAGAAGAAAGAT+GGG + chr4_1:85272290-85272309 Msa0580210:CDS 35.0%
ACCATTCCAATCTACTTTCT+TGG + chr4_1:85272337-85272356 Msa0580210:CDS 35.0%
TCCAAGAAAGTAGATTGGAA+TGG - chr4_1:85272341-85272360 None:intergenic 35.0%
ATTCCAATCTACTTTCTTGG+AGG + chr4_1:85272340-85272359 Msa0580210:CDS 35.0%
TCAGCTTGTAGTAATGTAAC+TGG + chr4_1:85272483-85272502 Msa0580210:CDS 35.0%
AGGCTTATTCACCAATACAA+AGG + chr4_1:85272534-85272553 Msa0580210:CDS 35.0%
AGCATGCAAAACCTTTGTAT+TGG - chr4_1:85272548-85272567 None:intergenic 35.0%
! TTTAGGGTTGTCATTAACTG+GGG + chr4_1:85272597-85272616 Msa0580210:intron 35.0%
ACTCTTCAACCTATGTGAAT+AGG + chr4_1:85272892-85272911 Msa0580210:intron 35.0%
TTTATTTAGTGGTCCGTATG+TGG + chr4_1:85273411-85273430 Msa0580210:intron 35.0%
TTGTTCATTAACAGTATCCC+TGG - chr4_1:85273520-85273539 None:intergenic 35.0%
CGTCAATAGCTTCAATGAAA+AGG + chr4_1:85273600-85273619 Msa0580210:CDS 35.0%
GGTGCAATAAAATATGAAGG+AGG - chr4_1:85273824-85273843 None:intergenic 35.0%
TCCGGTGCAATAAAATATGA+AGG - chr4_1:85273827-85273846 None:intergenic 35.0%
AATAAGGCGTACAATTCTTG+AGG - chr4_1:85273853-85273872 None:intergenic 35.0%
TTATAAGTACCCCTACTCAA+TGG - chr4_1:85274096-85274115 None:intergenic 35.0%
!! GAGTAGGGGTACTTATAAAA+TGG + chr4_1:85274098-85274117 Msa0580210:intron 35.0%
TAAGATTAAAATGCCCCTAG+TGG - chr4_1:85274166-85274185 None:intergenic 35.0%
ACATGATAATATGCAAGGTC+CGG + chr4_1:85274353-85274372 Msa0580210:intron 35.0%
!!! TATTTTTTTTTGTGGTGGCC+GGG - chr4_1:85274386-85274405 None:intergenic 35.0%
AATACACACGAAATGGATGT+CGG - chr4_1:85274791-85274810 None:intergenic 35.0%
ACATCCATTTCGTGTGTATT+TGG + chr4_1:85274791-85274810 Msa0580210:intron 35.0%
GATACCAAATACACACGAAA+TGG - chr4_1:85274798-85274817 None:intergenic 35.0%
AGGGAAACAAGGAAAAACAA+TGG - chr4_1:85274860-85274879 None:intergenic 35.0%
TCAAGGAGTCAATTTATCCT+AGG + chr4_1:85275040-85275059 Msa0580210:intron 35.0%
TGCTCATAGCTTAGTTAAAG+CGG - chr4_1:85275171-85275190 None:intergenic 35.0%
TGTGAGTACAAATTCAACCT+AGG - chr4_1:85275213-85275232 None:intergenic 35.0%
AAATCACACACACAAAGTAG+AGG + chr4_1:85275795-85275814 Msa0580210:intron 35.0%
! ACATTTTTGTCAGTTGAGCT+GGG + chr4_1:85275864-85275883 Msa0580210:intron 35.0%
! TCTATCCCATGATAATTTGC+CGG - chr4_1:85275952-85275971 None:intergenic 35.0%
TAATGTGTTTCTTGTATGCC+AGG + chr4_1:85276048-85276067 Msa0580210:intron 35.0%
ATTGTACTTAGAGGACATAG+AGG + chr4_1:85276075-85276094 Msa0580210:CDS 35.0%
CTCACTGTTTGTATTATTGG+AGG - chr4_1:85276121-85276140 None:intergenic 35.0%
GCTCTCACTGTTTGTATTAT+TGG - chr4_1:85276124-85276143 None:intergenic 35.0%
CTCTTGAATAGCTGATCTAA+CGG - chr4_1:85276488-85276507 None:intergenic 35.0%
! TTTTCCTTACTACATGGATG+AGG + chr4_1:85276750-85276769 Msa0580210:CDS 35.0%
! AATTGAAGTTGTATAGCGGA+AGG - chr4_1:85276834-85276853 None:intergenic 35.0%
AAAGCTTGAAACTCTGATGA+AGG + chr4_1:85276885-85276904 Msa0580210:CDS 35.0%
!! AATCAGTTGGTAAGATGAGA+AGG + chr4_1:85276992-85277011 Msa0580210:CDS 35.0%
CTCAGATTCTTTCGAGGATT+TGG + chr4_1:85271342-85271361 Msa0580210:CDS 40.0%
AGATTCTTTCGAGGATTTGG+TGG + chr4_1:85271345-85271364 Msa0580210:CDS 40.0%
TGGTTGAGGTCACAAATCAT+TGG + chr4_1:85271418-85271437 Msa0580210:CDS 40.0%
! TCAACTCTCCTTTTGGTACA+AGG + chr4_1:85271455-85271474 Msa0580210:CDS 40.0%
ACTTGTCTATGCTGATCACA+CGG + chr4_1:85271480-85271499 Msa0580210:CDS 40.0%
GTAGAAAGGCAGAAGATGTT+TGG - chr4_1:85271545-85271564 None:intergenic 40.0%
GAATTAGTACCAAGAGGATG+AGG + chr4_1:85271908-85271927 Msa0580210:intron 40.0%
! TTCTGTTTTCCTCATCCTCT+TGG - chr4_1:85271920-85271939 None:intergenic 40.0%
CAACGTAACTCTCACAAGTA+TGG - chr4_1:85272092-85272111 None:intergenic 40.0%
CATACTTGTGAGAGTTACGT+TGG + chr4_1:85272090-85272109 Msa0580210:CDS 40.0%
TGGAAACAGGACGACAAAAA+TGG + chr4_1:85272110-85272129 Msa0580210:CDS 40.0%
TACTTCTTGAAGCCTCTTGA+TGG - chr4_1:85272223-85272242 None:intergenic 40.0%
CAAGAGGCTTCAAGAAGTAA+TGG + chr4_1:85272224-85272243 Msa0580210:CDS 40.0%
GCCTTGGTAAAGAAGAAAGA+TGG + chr4_1:85272289-85272308 Msa0580210:CDS 40.0%
CCCATCTTTCTTCTTTACCA+AGG - chr4_1:85272293-85272312 None:intergenic 40.0%
TGGTAAAGAAGAAAGATGGG+TGG + chr4_1:85272293-85272312 Msa0580210:CDS 40.0%
! GAAAGATGGGTGGTTTTTGT+TGG + chr4_1:85272303-85272322 Msa0580210:CDS 40.0%
AGATTGGAATGGTGCTCATA+GGG - chr4_1:85272330-85272349 None:intergenic 40.0%
TAGATTGGAATGGTGCTCAT+AGG - chr4_1:85272331-85272350 None:intergenic 40.0%
TTGCCTCCAAGAAAGTAGAT+TGG - chr4_1:85272346-85272365 None:intergenic 40.0%
ACTTTCTTGGAGGCAAAGTT+TGG + chr4_1:85272350-85272369 Msa0580210:CDS 40.0%
!! AGATTGGCCTTGATGATCAA+GGG + chr4_1:85272385-85272404 Msa0580210:CDS 40.0%
!! AGCTTTGAAGCTACAACTTG+AGG + chr4_1:85272422-85272441 Msa0580210:CDS 40.0%
!! CATGCTTTGATTTTGCAGCA+AGG + chr4_1:85272562-85272581 Msa0580210:CDS 40.0%
TTAGGGTTGTCATTAACTGG+GGG + chr4_1:85272598-85272617 Msa0580210:intron 40.0%
CATGCAGTCTCATATGATGA+CGG + chr4_1:85272691-85272710 Msa0580210:intron 40.0%
ATGCAGTCTCATATGATGAC+GGG + chr4_1:85272692-85272711 Msa0580210:intron 40.0%
AACCTATGTGAATAGGTCTC+TGG + chr4_1:85272899-85272918 Msa0580210:intron 40.0%
TTCCAGAGACCTATTCACAT+AGG - chr4_1:85272904-85272923 None:intergenic 40.0%
TTTCCAGCAGTGTGAACAAT+TGG + chr4_1:85273264-85273283 Msa0580210:intron 40.0%
TTCCAGCAGTGTGAACAATT+GGG + chr4_1:85273265-85273284 Msa0580210:intron 40.0%
CTCATGTCAATCTCCACATA+CGG - chr4_1:85273427-85273446 None:intergenic 40.0%
TGTGGAGATTGACATGAGAT+CGG + chr4_1:85273429-85273448 Msa0580210:CDS 40.0%
! CTTATGTGGGCTGATGAAAA+CGG - chr4_1:85273476-85273495 None:intergenic 40.0%
ATCAGCCCACATAAGTTTCT+TGG + chr4_1:85273481-85273500 Msa0580210:CDS 40.0%
! TTTTCACCTCCATCAACTTG+TGG + chr4_1:85273559-85273578 Msa0580210:CDS 40.0%
GTACAATTCTTGAGGAACTC+CGG - chr4_1:85273845-85273864 None:intergenic 40.0%
!!! ATTTTTTTTTGTGGTGGCCG+GGG - chr4_1:85274385-85274404 None:intergenic 40.0%
!! TTCTTTTTGGCAGGGAAACA+AGG - chr4_1:85274871-85274890 None:intergenic 40.0%
! CTTAGTTAAAGCGGCTTTGT+CGG - chr4_1:85275162-85275181 None:intergenic 40.0%
AGTCAAAAACTACGTGATCG+AGG + chr4_1:85275471-85275490 Msa0580210:intron 40.0%
GTCAAAAACTACGTGATCGA+GGG + chr4_1:85275472-85275491 Msa0580210:intron 40.0%
TCAAAAACTACGTGATCGAG+GGG + chr4_1:85275473-85275492 Msa0580210:intron 40.0%
! GACATTTTTGTCAGTTGAGC+TGG + chr4_1:85275863-85275882 Msa0580210:intron 40.0%
CGGTAAATGACATGCATATC+GGG - chr4_1:85275991-85276010 None:intergenic 40.0%
GCGGTAAATGACATGCATAT+CGG - chr4_1:85275992-85276011 None:intergenic 40.0%
CCTCTAAGTACAATGTATCC+TGG - chr4_1:85276069-85276088 None:intergenic 40.0%
CCAGGATACATTGTACTTAG+AGG + chr4_1:85276066-85276085 Msa0580210:intron 40.0%
ACTTAGAGGACATAGAGGAA+AGG + chr4_1:85276080-85276099 Msa0580210:CDS 40.0%
CTTAGAGGACATAGAGGAAA+GGG + chr4_1:85276081-85276100 Msa0580210:CDS 40.0%
GACATAGAGGAAAGGGAAAA+CGG + chr4_1:85276088-85276107 Msa0580210:CDS 40.0%
CTTGCGTTCACTTCTATTGA+TGG - chr4_1:85276317-85276336 None:intergenic 40.0%
CGCAAGACTAAGAACAAAAG+AGG + chr4_1:85276331-85276350 Msa0580210:CDS 40.0%
TTGAGCAAATCATGTCCGTA+AGG - chr4_1:85276442-85276461 None:intergenic 40.0%
CGTTAGATCAGCTATTCAAG+AGG + chr4_1:85276486-85276505 Msa0580210:CDS 40.0%
GGGTTATGTTGGTGTAAAAC+CGG + chr4_1:85276711-85276730 Msa0580210:intron 40.0%
GGTTATGTTGGTGTAAAACC+GGG + chr4_1:85276712-85276731 Msa0580210:CDS 40.0%
AAACTAACTCTAGTCCATCC+CGG - chr4_1:85276733-85276752 None:intergenic 40.0%
ATGCTTGGAGAAGGGAATTT+GGG - chr4_1:85277057-85277076 None:intergenic 40.0%
TGACGACGGTAGAACAAACT+TGG + chr4_1:85271218-85271237 Msa0580210:CDS 45.0%
CATAGCTCCAAGCAGAAACA+AGG + chr4_1:85271273-85271292 Msa0580210:CDS 45.0%
!! TTCGAGGATTTGGTGGAGAT+AGG + chr4_1:85271352-85271371 Msa0580210:CDS 45.0%
!! CCACTGATTCATTACATGGC+AGG - chr4_1:85271384-85271403 None:intergenic 45.0%
CCTGCCATGTAATGAATCAG+TGG + chr4_1:85271381-85271400 Msa0580210:CDS 45.0%
GTGAGAGTTACGTTGGAAAC+AGG + chr4_1:85272097-85272116 Msa0580210:CDS 45.0%
! GAAAGAATGTTGAGGTGCCT+TGG + chr4_1:85272273-85272292 Msa0580210:CDS 45.0%
TTGGCTGAGGTTGTAGAGAT+TGG + chr4_1:85272369-85272388 Msa0580210:CDS 45.0%
!! GAGATTGGCCTTGATGATCA+AGG + chr4_1:85272384-85272403 Msa0580210:CDS 45.0%
CAAGCAACCCTTGATCATCA+AGG - chr4_1:85272395-85272414 None:intergenic 45.0%
TGATCAAGGGTTGCTTGACA+TGG + chr4_1:85272398-85272417 Msa0580210:CDS 45.0%
AGATACCAATCGACCCTTGT+TGG + chr4_1:85272452-85272471 Msa0580210:CDS 45.0%
GATACCAATCGACCCTTGTT+GGG + chr4_1:85272453-85272472 Msa0580210:CDS 45.0%
GCTGAGAAAGATCCCAACAA+GGG - chr4_1:85272468-85272487 None:intergenic 45.0%
AGCTGAGAAAGATCCCAACA+AGG - chr4_1:85272469-85272488 None:intergenic 45.0%
CAGATACACGAGCAATTGCT+AGG + chr4_1:85272514-85272533 Msa0580210:CDS 45.0%
CGTCATCATATGAGACTGCA+TGG - chr4_1:85272693-85272712 None:intergenic 45.0%
ATAGGAGAGTGATTGGAGCA+TGG + chr4_1:85272738-85272757 Msa0580210:intron 45.0%
GTGGAGATTGACATGAGATC+GGG + chr4_1:85273430-85273449 Msa0580210:CDS 45.0%
TGGAGATTGACATGAGATCG+GGG + chr4_1:85273431-85273450 Msa0580210:CDS 45.0%
ATGAGATCGGGGGAAATTGA+TGG + chr4_1:85273442-85273461 Msa0580210:CDS 45.0%
AGCCCACATAAGTTTCTTGG+TGG + chr4_1:85273484-85273503 Msa0580210:CDS 45.0%
GGCCACCAAGAAACTTATGT+GGG - chr4_1:85273489-85273508 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr4_1:85274325-85274344 Msa0580210:intron 45.0%
! AGAAGCATAGACGTGCTGAA+CGG + chr4_1:85274942-85274961 Msa0580210:intron 45.0%
ACCTAGGAGAGACAAGCAAA+CGG - chr4_1:85275197-85275216 None:intergenic 45.0%
! CACACACAAAGTAGAGGTAC+CGG + chr4_1:85275801-85275820 Msa0580210:intron 45.0%
AATTATTAGGCCGGACGTCA+TGG - chr4_1:85275841-85275860 None:intergenic 45.0%
ATAGAGGAAAGGGAAAACGG+TGG + chr4_1:85276091-85276110 Msa0580210:CDS 45.0%
ACAAACAGTGAGAGCAGCTT+TGG + chr4_1:85276129-85276148 Msa0580210:CDS 45.0%
!! TGAGAGCAGCTTTGGCATTT+TGG + chr4_1:85276137-85276156 Msa0580210:CDS 45.0%
!! GAGAGCAGCTTTGGCATTTT+GGG + chr4_1:85276138-85276157 Msa0580210:CDS 45.0%
!! CTCTTTGGAATACAAGCTCG+AGG + chr4_1:85276397-85276416 Msa0580210:CDS 45.0%
! TTTGGAATACAAGCTCGAGG+TGG + chr4_1:85276400-85276419 Msa0580210:CDS 45.0%
TTGGAATACAAGCTCGAGGT+GGG + chr4_1:85276401-85276420 Msa0580210:CDS 45.0%
ATGTTGGTGTAAAACCGGGA+TGG + chr4_1:85276716-85276735 Msa0580210:CDS 45.0%
TCCTTACTACATGGATGAGG+AGG + chr4_1:85276753-85276772 Msa0580210:CDS 45.0%
CCTTACTACATGGATGAGGA+GGG + chr4_1:85276754-85276773 Msa0580210:CDS 45.0%
CATGCTTGGAGAAGGGAATT+TGG - chr4_1:85277058-85277077 None:intergenic 45.0%
CAAATTCCCTTCTCCAAGCA+TGG + chr4_1:85277056-85277075 Msa0580210:CDS 45.0%
AGAACACTGGGATCTACATC+TGG - chr4_1:85277087-85277106 None:intergenic 45.0%
!!! TATATACTATATATTTTTTT+AGG + chr4_1:85273967-85273986 Msa0580210:intron 5.0%
!!! ATATACTATATATTTTTTTA+GGG + chr4_1:85273968-85273987 Msa0580210:intron 5.0%
!! AAAAAATAAAAATAAAAATC+CGG + chr4_1:85275930-85275949 Msa0580210:intron 5.0%
GACGATGCACTCATGCTATG+CGG + chr4_1:85272180-85272199 Msa0580210:CDS 50.0%
TTGGAGGCAAAGTTTGGCTG+AGG + chr4_1:85272356-85272375 Msa0580210:CDS 50.0%
AGATCCCAACAAGGGTCGAT+TGG - chr4_1:85272460-85272479 None:intergenic 50.0%
GAGAGTGATTGGAGCATGGA+GGG + chr4_1:85272742-85272761 Msa0580210:intron 50.0%
ATTGGAGCATGGAGGGAGAT+GGG + chr4_1:85272749-85272768 Msa0580210:intron 50.0%
! ATGGAGGGAGATGGGTTTGA+TGG + chr4_1:85272757-85272776 Msa0580210:intron 50.0%
GACCCAATTGTTCACACTGC+TGG - chr4_1:85273270-85273289 None:intergenic 50.0%
GGAGATTGACATGAGATCGG+GGG + chr4_1:85273432-85273451 Msa0580210:CDS 50.0%
GGGCCACCAAGAAACTTATG+TGG - chr4_1:85273490-85273509 None:intergenic 50.0%
ACAGTATCCCTGGAGAGTCA+GGG - chr4_1:85273510-85273529 None:intergenic 50.0%
AACAGTATCCCTGGAGAGTC+AGG - chr4_1:85273511-85273530 None:intergenic 50.0%
TCACCTCCATCAACTTGTGG+AGG + chr4_1:85273562-85273581 Msa0580210:CDS 50.0%
! GTACCACCTCCACAAGTTGA+TGG - chr4_1:85273571-85273590 None:intergenic 50.0%
! TCCCTTACGTGCCATTGAGT+AGG + chr4_1:85274082-85274101 Msa0580210:intron 50.0%
CCCTACTCAATGGCACGTAA+GGG - chr4_1:85274086-85274105 None:intergenic 50.0%
! CCCTTACGTGCCATTGAGTA+GGG + chr4_1:85274083-85274102 Msa0580210:intron 50.0%
! CCTTACGTGCCATTGAGTAG+GGG + chr4_1:85274084-85274103 Msa0580210:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr4_1:85274324-85274343 Msa0580210:intron 50.0%
TCCGTTTGCTTGTCTCTCCT+AGG + chr4_1:85275193-85275212 Msa0580210:intron 50.0%
CATGGTCAGAGTTCGAACTC+CGG - chr4_1:85275823-85275842 None:intergenic 50.0%
TGTGCTTGTGCTGGACCTTA+CGG + chr4_1:85276424-85276443 Msa0580210:CDS 50.0%
CCCTCCTCATCCATGTAGTA+AGG - chr4_1:85276757-85276776 None:intergenic 50.0%
GACAGACCATGCTTGGAGAA+GGG - chr4_1:85277065-85277084 None:intergenic 50.0%
ACATCTGGACAGACCATGCT+TGG - chr4_1:85277072-85277091 None:intergenic 50.0%
TATGCTGATCACACGGCCTC+AGG + chr4_1:85271487-85271506 Msa0580210:CDS 55.0%
GAAGTGAAGACTGCGACCTG+AGG - chr4_1:85271506-85271525 None:intergenic 55.0%
TGCACTCATGCTATGCGGCT+CGG + chr4_1:85272185-85272204 Msa0580210:CDS 55.0%
GGAGAGTGATTGGAGCATGG+AGG + chr4_1:85272741-85272760 Msa0580210:intron 55.0%
GATTGGAGCATGGAGGGAGA+TGG + chr4_1:85272748-85272767 Msa0580210:intron 55.0%
!! CCACCTCCACAAGTTGATGG+AGG - chr4_1:85273568-85273587 None:intergenic 55.0%
CCTCCATCAACTTGTGGAGG+TGG + chr4_1:85273565-85273584 Msa0580210:CDS 55.0%
CCCCTACTCAATGGCACGTA+AGG - chr4_1:85274087-85274106 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr4_1:85274323-85274342 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr4_1:85274320-85274339 Msa0580210:intron 55.0%
CGAACTCTGACCATGACGTC+CGG + chr4_1:85275828-85275847 Msa0580210:intron 55.0%
GGACAGACCATGCTTGGAGA+AGG - chr4_1:85277066-85277085 None:intergenic 55.0%
GCACTCATGCTATGCGGCTC+GGG + chr4_1:85272186-85272205 Msa0580210:CDS 60.0%
GCACAACGGCAGCCATCAAG+AGG + chr4_1:85272208-85272227 Msa0580210:CDS 60.0%
! TTGGTGGCCCTGACTCTCCA+GGG + chr4_1:85273500-85273519 Msa0580210:CDS 60.0%
GCAAGGTCCGGTTCAAACCC+CGG + chr4_1:85274365-85274384 Msa0580210:intron 60.0%
! GCTATGCGGCTCGGGCACAA+CGG + chr4_1:85272194-85272213 Msa0580210:CDS 65.0%
! CTTGGTGGCCCTGACTCTCC+AGG + chr4_1:85273499-85273518 Msa0580210:CDS 65.0%
GTGGTGGCCGGGGTTTGAAC+CGG - chr4_1:85274375-85274394 None:intergenic 65.0%
CGAGGTGGGTGTGCTTGTGC+TGG + chr4_1:85276415-85276434 Msa0580210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85271214 85277122 85271214 ID=Msa0580210;Name=Msa0580210
chr4_1 mRNA 85271214 85277122 85271214 ID=Msa0580210-mRNA-1;Parent=Msa0580210;Name=Msa0580210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.25|0|1|1|1|5|0|634
chr4_1 exon 85271214 85271565 85271214 ID=Msa0580210-mRNA-1:exon:31208;Parent=Msa0580210-mRNA-1
chr4_1 exon 85272082 85272583 85272082 ID=Msa0580210-mRNA-1:exon:31209;Parent=Msa0580210-mRNA-1
chr4_1 exon 85273420 85273621 85273420 ID=Msa0580210-mRNA-1:exon:31210;Parent=Msa0580210-mRNA-1
chr4_1 exon 85276070 85276507 85276070 ID=Msa0580210-mRNA-1:exon:31211;Parent=Msa0580210-mRNA-1
chr4_1 exon 85276712 85277122 85276712 ID=Msa0580210-mRNA-1:exon:31212;Parent=Msa0580210-mRNA-1
chr4_1 CDS 85271214 85271565 85271214 ID=Msa0580210-mRNA-1:cds;Parent=Msa0580210-mRNA-1
chr4_1 CDS 85272082 85272583 85272082 ID=Msa0580210-mRNA-1:cds;Parent=Msa0580210-mRNA-1
chr4_1 CDS 85273420 85273621 85273420 ID=Msa0580210-mRNA-1:cds;Parent=Msa0580210-mRNA-1
chr4_1 CDS 85276070 85276507 85276070 ID=Msa0580210-mRNA-1:cds;Parent=Msa0580210-mRNA-1
chr4_1 CDS 85276712 85277122 85276712 ID=Msa0580210-mRNA-1:cds;Parent=Msa0580210-mRNA-1
Gene Sequence

>Msa0580210

ATGTTGACGACGGTAGAACAAACTTGGTTAGCAGTGAAACCAATATTTTCTGAGTTATGCATAGCTCCAAGCAGAAACAAGGTCAATAACGTTTCAACCGAAACATCTCCTGATTTTTGCAATATTCACTCAGATTCTTTCGAGGATTTGGTGGAGATAGGCATAAACCTGCCATGTAATGAATCAGTGGAAGAAAAACTATGTTGGTTGAGGTCACAAATCATTGGTAATGATGTAGAATTCAACTCTCCTTTTGGTACAAGGAAACTTGTCTATGCTGATCACACGGCCTCAGGTCGCAGTCTTCACTTCATTGAAAACTTCATCACCAAACATCTTCTGCCTTTCTACGGTAATACCCATACTTGTGAGAGTTACGTTGGAAACAGGACGACAAAAATGGTACATGAAGCAACCAAGTACATTAAAAAATGCTTAGGTGGTGGGGAAGACGATGCACTCATGCTATGCGGCTCGGGCACAACGGCAGCCATCAAGAGGCTTCAAGAAGTAATGGGAATAGTTGTCCCTTCTATTTTGAGAGAAAGAATGTTGAGGTGCCTTGGTAAAGAAGAAAGATGGGTGGTTTTTGTTGGACCCTATGAGCACCATTCCAATCTACTTTCTTGGAGGCAAAGTTTGGCTGAGGTTGTAGAGATTGGCCTTGATGATCAAGGGTTGCTTGACATGGAAGCTTTGAAGCTACAACTTGAGGCATATAAAGATACCAATCGACCCTTGTTGGGATCTTTCTCAGCTTGTAGTAATGTAACTGGAATCTACTCAGATACACGAGCAATTGCTAGGCTTATTCACCAATACAAAGGTTTTGCATGCTTTGATTTTGCAGCAAGTGGTCCGTATGTGGAGATTGACATGAGATCGGGGGAAATTGATGGATATGATGCCGTTTTCATCAGCCCACATAAGTTTCTTGGTGGCCCTGACTCTCCAGGGATACTGTTAATGAACAAGACTTTGTATATGTTGAGATTTTCACCTCCATCAACTTGTGGAGGTGGTACTGTTAATTACGTCAATAGCTTCAATGAAAAGGATACATTGTACTTAGAGGACATAGAGGAAAGGGAAAACGGTGGCACACCTCCAATAATACAAACAGTGAGAGCAGCTTTGGCATTTTGGGTGAAAGAGTACATCAACTATGAAGAAATTGATAGAAGAGAACAACTCTACATTAACAAAGCACTTAAGAAATTCATTCCCAACCCAAACATTGAGATTTTAGGGAACTTAAGCACCAAAAGACAAGCTATATTGTCATTTGTCATTTATGCGACCATCAATAGAAGTGAACGCAAGACTAAGAACAAAAGAGGTAAGATACTTAATGGCTCCTTTGTTGCAACATTGTTAAACGATCTCTTTGGAATACAAGCTCGAGGTGGGTGTGCTTGTGCTGGACCTTACGGACATGATTTGCTCAACATCAATGAATCTCAATCGCTTGCCGTTAGATCAGCTATTCAAGAGGGTTATGTTGGTGTAAAACCGGGATGGACTAGAGTTAGTTTTCCTTACTACATGGATGAGGAGGGATTTGAGTTCATTTTAACTGCCATAGAGTTTGTATCTATATATGGTCAACGGTTCCTTCCGCTATACAACTTCAATTTGAAAAATGGCAACTGGAGAATAAAGAAACAAAAGCTTGAAACTCTGATGAAGGAAAATAAATGTTACTTCAAAGAAACAAAAGAGAAAACAAACAATGATTTTTTCAAAGCAGATGGTGAATATAATGTAAGAATTAAATCAGTTGGTAAGATGAGAAGGAAATCATTCTTAGCAGCTAAATGTATTGCAAGTCGTCTTCCCAAATTCCCTTCTCCAAGCATGGTCTGTCCAGATGTAGATCCCAGTGTTCTCCATTTTATAGTTTAA

Protein sequence

>Msa0580210

MLTTVEQTWLAVKPIFSELCIAPSRNKVNNVSTETSPDFCNIHSDSFEDLVEIGINLPCNESVEEKLCWLRSQIIGNDVEFNSPFGTRKLVYADHTASGRSLHFIENFITKHLLPFYGNTHTCESYVGNRTTKMVHEATKYIKKCLGGGEDDALMLCGSGTTAAIKRLQEVMGIVVPSILRERMLRCLGKEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDDQGLLDMEALKLQLEAYKDTNRPLLGSFSACSNVTGIYSDTRAIARLIHQYKGFACFDFAASGPYVEIDMRSGEIDGYDAVFISPHKFLGGPDSPGILLMNKTLYMLRFSPPSTCGGGTVNYVNSFNEKDTLYLEDIEERENGGTPPIIQTVRAALAFWVKEYINYEEIDRREQLYINKALKKFIPNPNIEILGNLSTKRQAILSFVIYATINRSERKTKNKRGKILNGSFVATLLNDLFGIQARGGCACAGPYGHDLLNINESQSLAVRSAIQEGYVGVKPGWTRVSFPYYMDEEGFEFILTAIEFVSIYGQRFLPLYNFNLKNGNWRIKKQKLETLMKENKCYFKETKEKTNNDFFKADGEYNVRIKSVGKMRRKSFLAAKCIASRLPKFPSPSMVCPDVDPSVLHFIV*