AlfalfaGEDB | Msa0261400

M. sativa cultivar zhongmu-4 / Msa0261400

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261400	XP_013464999.1	86.327	490	62	3	7	495	3	488	0.0	868

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261400	sp\|Q9ZWB4\|3AT1_ARATH	40.580	483	256	14	21	494	9	469	1.19e-103	321

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261400	A0A072VAG9	86.327	490	62	3	7	495	3	488	0.0	868

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa0261400	0.808376	3.193060e-50	-8.615850e-47
Msa0010150	Msa0261400	0.816845	4.481676e-52	-8.615850e-47
Msa0011040	Msa0261400	0.815597	8.519231e-52	-8.615850e-47
Msa0012380	Msa0261400	-0.816528	5.279165e-52	-8.615850e-47
Msa0013270	Msa0261400	0.820788	5.701068e-53	-8.615850e-47
Msa0014590	Msa0261400	0.864812	9.290049e-65	-8.615850e-47
Msa0015070	Msa0261400	0.812152	4.893969e-51	-8.615850e-47
Msa0017710	Msa0261400	0.807928	3.977093e-50	-8.615850e-47
Msa0024650	Msa0261400	0.820606	6.276258e-53	-8.615850e-47
Msa0025570	Msa0261400	0.802617	5.153932e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261400	MtrunA17_Chr2g0323511	86.327	490	62	3	7	495	3	488	0.0	868
Msa0261400	MtrunA17_Chr2g0323471	69.739	499	125	7	6	495	2	483	0.0	666
Msa0261400	MtrunA17_Chr8g0339641	66.598	488	139	11	18	493	1	476	0.0	616
Msa0261400	MtrunA17_Chr7g0219881	42.589	479	243	9	20	489	5	460	7.64e-122	364
Msa0261400	MtrunA17_Chr3g0083761	42.355	484	250	10	20	495	5	467	9.22e-120	359
Msa0261400	MtrunA17_Chr2g0323441	91.954	174	13	1	20	192	2	175	2.80e-111	327
Msa0261400	MtrunA17_Chr3g0087901	36.550	487	272	10	18	492	6	467	3.72e-102	314
Msa0261400	MtrunA17_Chr7g0219331	38.763	485	252	14	16	485	93	547	9.05e-91	287
Msa0261400	MtrunA17_Chr2g0323421	35.091	493	273	14	16	492	51	512	3.41e-87	277
Msa0261400	MtrunA17_Chr2g0323501	35.332	467	260	13	43	492	37	478	9.81e-85	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0261400	AT1G03940.1	40.580	483	256	14	21	494	9	469	1.21e-104	321
Msa0261400	AT1G03495.1	40.730	356	182	11	22	371	10	342	1.38e-70	229
Msa0261400	AT5G61160.1	32.653	490	276	14	18	491	1	452	3.52e-66	220
Msa0261400	AT3G29670.1	31.328	482	288	13	18	489	1	449	5.45e-66	220
Msa0261400	AT3G29635.1	31.687	486	292	12	18	492	1	457	1.09e-63	214
Msa0261400	AT3G29680.1	31.601	481	286	12	19	490	2	448	1.45e-60	206
Msa0261400	AT5G39090.1	32.143	476	282	14	19	487	4	445	9.99e-60	203
Msa0261400	AT3G29590.1	31.828	487	273	18	19	490	7	449	8.63e-59	201
Msa0261400	AT5G39050.1	29.719	498	302	13	12	491	2	469	4.60e-56	194
Msa0261400	AT5G39080.1	29.569	487	284	15	19	482	4	454	6.85e-54	188

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Find 103 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGTGTTGGAGGGTTA+AGG	0.387404	2_2:+59787953	None:intergenic
AAAGTTAAGGGGAGAATGGT+TGG	0.550742	2_2:+59788092	None:intergenic
AAATAGAGTTAAAGATCCAA+AGG	0.571917	2_2:-59787511	Msa0261400:CDS
AAGGGGAGAATGGTTGGTGA+TGG	0.521926	2_2:+59788098	None:intergenic
AATAGAGTTAAAGATCCAAA+GGG	0.576796	2_2:-59787510	Msa0261400:CDS
AATCGTTGATGCCTAATTAT+AGG	0.244855	2_2:-59786993	Msa0261400:CDS
ACAACCATGTTGCTGCAGAC+GGG	0.571055	2_2:-59787656	Msa0261400:CDS
ACCACTACAAGAGACGTACC+CGG	0.658474	2_2:+59786958	None:intergenic
ACCGGGTACGTCTCTTGTAG+TGG	0.574375	2_2:-59786959	Msa0261400:CDS
ACGTCTCTTGTAGTGGTTGC+TGG	0.360866	2_2:-59786952	Msa0261400:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGATACGATGAATT+GGG	+	chr2_2:59786893-59786912	None:intergenic	30.0%
TAGAAGAAGATACGATGAAT+TGG	+	chr2_2:59786894-59786913	None:intergenic	30.0%
GAAAGTGAGTGTTTAAGAAT+GGG	+	chr2_2:59786960-59786979	None:intergenic	30.0%
ATGTTATCTTGTTCTATACG+AGG	+	chr2_2:59787185-59787204	None:intergenic	30.0%
TGACTTGAATAGCCATTATA+GGG	+	chr2_2:59787217-59787236	None:intergenic	30.0%
ATCAAAAGAAATGGAATCTG+CGG	-	chr2_2:59787484-59787503	Msa0261400:CDS	30.0%
TAACCAATTTCTTCAACTTC+TGG	+	chr2_2:59787574-59787593	None:intergenic	30.0%
TTGTAACAAGTTCCTTGATT+TGG	-	chr2_2:59787642-59787661	Msa0261400:CDS	30.0%
GATCATACAAAACCAAATCA+AGG	+	chr2_2:59787657-59787676	None:intergenic	30.0%
GATGAGTTAGTTGGAAAAAA+TGG	-	chr2_2:59787845-59787864	Msa0261400:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	59786729	59788225	59786729	ID=Msa0261400;Name=Msa0261400
chr2_2	mRNA	59786729	59788225	59786729	ID=Msa0261400-mRNA-1;Parent=Msa0261400;Name=Msa0261400-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|498
chr2_2	exon	59786729	59788225	59786729	ID=Msa0261400-mRNA-1:exon:18396;Parent=Msa0261400-mRNA-1
chr2_2	CDS	59786729	59788225	59786729	ID=Msa0261400-mRNA-1:cds;Parent=Msa0261400-mRNA-1

Gene Sequence

>Msa0261400

ATGAACATCACAAACACAAACACAAACACAAACATAACTCACGAGACCAAATTCAGCATGAAGGTGATAGAACATAGTCAAGTTGCACCACCACCAAATTTAGTTCCATCACCAACCATTCTCCCCTTAACTTTCTTCGACATACCATGGTTTTATTGTGACCCAATTCATCGTATCTTCTTCTACCACTTTCCTCATCCAACTCATCACTTCCTACAAACAACACTTCCCATTCTTAAACACTCACTTTCCTTAACCCTCCAACACTTCTTTCCCTTCACCTCCAACCTCATCATCCCTCCAAATTCCCATAACACTCCTCCTTACATACGTTACCTTGATGAAGACTCTATCTCCTTCACCGTCGCTGAATCCTCAGCAGACTTCAACATTCTCGTATCTGATTCACAAGATGCTCAAAACTGGCACCCTCTTGTTCCAAATTTACCTCCACCTCGTATAGAACAAGATAACATTCGTGTAATCCCTATAATGGCTATTCAAGTCACTGTTCTTCCGAACTCCGGTTTCTCTATCTGCCTCAGTTACAACCATGTTGCTGCAGACGGGAAATCACTTCATCATTTCATGAAATTTTGGGCCTCCCTTTCAAAAGCCATAGCAAAAAACAATAACAAAAATAATTTGTCTCTTGAATACTCTCCGCCTCTTGATCTTCCTTCACATGAAAGAAATAGAGTTAAAGATCCAAAGGGTCTTAAACTTGTATACTTGCAACAATTAGAAGATTCTGTATCAAAAGAAATGGAATCTGCGGGTTTGGTTCGAGATTCTTATGTTAGCAAGGTACGAACAACTTTGATATTGAGCTATGAACAAGTCCAGAAGTTGAAGAAATTGGTTACTGATAAATGTAAAGATAGTGAAAGAATAAAACACTTGTCTACTTTTGTTGTAACAAGTTCCTTGATTTGGTTTTGTATGATCAAATCGGAGGAGGGTGATAGCAAAAGTGATCAAGGTGAAGGTGATTGTGTTGTTGATGATAACTGCTACTTTGTGATTCTTGCAGATTGTCGTGATAGCGTTGGATTTTCATTACCAAAAACTTATTTTGGAAATTGTATTGCATCTAATGCTGTGGCTGTAAAGAGAGATGAGTTAGTTGGAAAAAATGGGATTGTTGTGGCTTCAAATGGTATTGAAAAGAAGATAAGAGATTTTAAGAATGATGCTTTGTTAGGAGCTGAATCGTTGATGCCTAATTATAGGAAATTCTCTAAACCGGGTACGTCTCTTGTAGTGGTTGCTGGTTCACCAAAATTGGCTGTTTATGAGACTGATTTTGGGTGGGGGAAGCCTAAGAAATCTGATGCAGTTCATCTTGATTCGTCCGTTTCGATTTCTCTTTCTGATTGCAGAGATGGTGGAGGTGGAATTGAGATTGGTTTGGCTCTTGAGAGGTCTAGAATGACTAATTTCATATACATCTTTCAAGAACGACTTGATAACATTTGTAGCATGCGAATGAACTAA

Protein sequence

>Msa0261400

MNITNTNTNTNITHETKFSMKVIEHSQVAPPPNLVPSPTILPLTFFDIPWFYCDPIHRIFFYHFPHPTHHFLQTTLPILKHSLSLTLQHFFPFTSNLIIPPNSHNTPPYIRYLDEDSISFTVAESSADFNILVSDSQDAQNWHPLVPNLPPPRIEQDNIRVIPIMAIQVTVLPNSGFSICLSYNHVAADGKSLHHFMKFWASLSKAIAKNNNKNNLSLEYSPPLDLPSHERNRVKDPKGLKLVYLQQLEDSVSKEMESAGLVRDSYVSKVRTTLILSYEQVQKLKKLVTDKCKDSERIKHLSTFVVTSSLIWFCMIKSEEGDSKSDQGEGDCVVDDNCYFVILADCRDSVGFSLPKTYFGNCIASNAVAVKRDELVGKNGIVVASNGIEKKIRDFKNDALLGAESLMPNYRKFSKPGTSLVVVAGSPKLAVYETDFGWGKPKKSDAVHLDSSVSISLSDCRDGGGGIEIGLALERSRMTNFIYIFQERLDNICSMRMN*