Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279190 | XP_013463250.1 | 85.903 | 227 | 6 | 1 | 1 | 201 | 1 | 227 | 5.43e-126 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279190 | sp|Q8RXK8|SYIM_ARATH | 59.545 | 220 | 62 | 2 | 9 | 201 | 21 | 240 | 1.12e-66 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279190 | A0A072V611 | 85.903 | 227 | 6 | 1 | 1 | 201 | 1 | 227 | 2.59e-126 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059590 | Msa0279190 | 0.814466 | 1.518680e-51 | -8.615850e-47 |
| Msa0162070 | Msa0279190 | 0.804787 | 1.826373e-49 | -8.615850e-47 |
| Msa0185550 | Msa0279190 | 0.823235 | 1.545063e-53 | -8.615850e-47 |
| Msa0206970 | Msa0279190 | 0.819155 | 1.347237e-52 | -8.615850e-47 |
| Msa0270610 | Msa0279190 | 0.808656 | 2.782230e-50 | -8.615850e-47 |
| Msa0279190 | Msa0380420 | 0.806167 | 9.380386e-50 | -8.615850e-47 |
| Msa0279190 | Msa0434630 | 0.816585 | 5.127225e-52 | -8.615850e-47 |
| Msa0279190 | Msa0476150 | 0.826338 | 2.865323e-54 | -8.615850e-47 |
| Msa0279190 | Msa0476180 | 0.840183 | 1.013864e-57 | -8.615850e-47 |
| Msa0279190 | Msa0579610 | 0.802046 | 6.754796e-49 | -8.615850e-47 |
| Msa0279190 | Msa0637850 | 0.806602 | 7.596573e-50 | -8.615850e-47 |
| Msa0279190 | Msa0709480 | 0.809718 | 1.647594e-50 | -8.615850e-47 |
| Msa0279190 | Msa0786090 | 0.806551 | 7.786574e-50 | -8.615850e-47 |
| Msa0279190 | Msa0790830 | 0.816853 | 4.464040e-52 | -8.615850e-47 |
| Msa0279190 | Msa0814760 | 0.828724 | 7.668737e-55 | -8.615850e-47 |
| Msa0279190 | Msa0823300 | 0.809513 | 1.823630e-50 | -8.615850e-47 |
| Msa0279190 | Msa0830410 | 0.852554 | 4.279080e-61 | -8.615850e-47 |
| Msa0279190 | Msa1000470 | 0.848032 | 7.935732e-60 | -8.615850e-47 |
| Msa0279190 | Msa1084490 | 0.812529 | 4.049648e-51 | -8.615850e-47 |
| Msa0279190 | Msa1218720 | 0.820242 | 7.606260e-53 | -8.615850e-47 |
| Msa0279190 | Msa1224150 | 0.811304 | 7.487363e-51 | -8.615850e-47 |
| Msa0279190 | Msa1310260 | 0.812610 | 3.887649e-51 | -8.615850e-47 |
| Msa0279190 | Msa1375630 | 0.802162 | 6.394133e-49 | -8.615850e-47 |
| Msa0279190 | Msa1376530 | 0.802789 | 4.748002e-49 | -8.615850e-47 |
| Msa0279190 | Msa1437690 | 0.828755 | 7.536989e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279190 | MtrunA17_Chr2g0295941 | 85.903 | 227 | 6 | 1 | 1 | 201 | 1 | 227 | 4.99e-130 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279190 | AT5G49030.2 | 59.545 | 220 | 62 | 2 | 9 | 201 | 21 | 240 | 5.81e-68 | 224 |
| Msa0279190 | AT5G49030.1 | 59.545 | 220 | 62 | 2 | 9 | 201 | 21 | 240 | 1.14e-67 | 224 |
| Msa0279190 | AT5G49030.3 | 59.545 | 220 | 62 | 2 | 9 | 201 | 207 | 426 | 1.28e-67 | 224 |
Find 49 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGAAATTCAGAAAATA+TGG | 0.233200 | 2_3:+12755616 | Msa0279190:CDS |
| TCATGCAAACCTCTTCTTAC+AGG | 0.258643 | 2_3:+12754881 | Msa0279190:CDS |
| TATTTCCCTCGTAGGTTGTT+AGG | 0.297890 | 2_3:+12754775 | Msa0279190:five_prime_UTR |
| GCCTTCTTCCCGGCCATAAC+AGG | 0.325622 | 2_3:-12755371 | None:intergenic |
| CCTCAAATTCTTCTCTTCAA+TGG | 0.336626 | 2_3:+12754840 | Msa0279190:exon |
| CATTGGTTTGTATCATTCTC+GGG | 0.354490 | 2_3:+12755250 | Msa0279190:CDS |
| ACCTTCTGCAGCCTTCTTCC+CGG | 0.363368 | 2_3:-12755381 | None:intergenic |
| GGATATTATAAATCGTTATA+AGG | 0.371113 | 2_3:+12755840 | Msa0279190:CDS |
| GATCTTCCCAAGACAGCATT+TGG | 0.371801 | 2_3:+12755567 | Msa0279190:CDS |
| CCATTGGTTTGTATCATTCT+CGG | 0.406029 | 2_3:+12755249 | Msa0279190:CDS |
| GCCTGTTATGGCCGGGAAGA+AGG | 0.408025 | 2_3:+12755370 | Msa0279190:CDS |
| CCATTGAAGAGAAGAATTTG+AGG | 0.409861 | 2_3:-12754840 | None:intergenic |
| TCTCATACCAAATGCTGTCT+TGG | 0.435141 | 2_3:-12755574 | None:intergenic |
| GCCTTTGCTCTCAACTTCAA+TGG | 0.435628 | 2_3:-12756596 | None:intergenic |
| ACCAATGGAATTCGTTCTCA+TGG | 0.446665 | 2_3:-12755234 | None:intergenic |
| CTCATACCAAATGCTGTCTT+GGG | 0.448277 | 2_3:-12755573 | None:intergenic |
| AATATAAACACAACATCATT+CGG | 0.452651 | 2_3:-12754756 | None:intergenic |
| GAAGAATTTGAGGTGATAAA+CGG | 0.453950 | 2_3:-12754830 | None:intergenic |
| ATCTACACTCCACTCATTGC+CGG | 0.456870 | 2_3:-12754806 | None:intergenic |
| TTCTTCAAAGCGAAGATCGC+GGG | 0.473909 | 2_3:+12755346 | Msa0279190:CDS |
| CCCATGAGAACGAATTCCAT+TGG | 0.478542 | 2_3:+12755233 | Msa0279190:CDS |
| TGAAGATCACCATTTGCATA+TGG | 0.494098 | 2_3:-12755787 | None:intergenic |
| AAACTATTGTACTCATTCAA+AGG | 0.501650 | 2_3:+12755313 | Msa0279190:CDS |
| GACGGTCCTCCATATGCAAA+TGG | 0.502560 | 2_3:+12755778 | Msa0279190:CDS |
| TGAGAGCAAATTCTTCGGTA+AGG | 0.502927 | 2_3:+12755592 | Msa0279190:CDS |
| TGGTATGAGAGCAAATTCTT+CGG | 0.508051 | 2_3:+12755587 | Msa0279190:CDS |
| TGTGTTTATATTTCCCTCGT+AGG | 0.517882 | 2_3:+12754767 | Msa0279190:five_prime_UTR |
| CATGCAAACCTCTTCTTACA+GGG | 0.528935 | 2_3:+12754882 | Msa0279190:CDS |
| TTGCATGAAGAGAGCGAAAG+TGG | 0.535864 | 2_3:-12754866 | None:intergenic |
| AGGTTGTTAGGTTGAGCAGC+CGG | 0.551692 | 2_3:+12754787 | Msa0279190:five_prime_UTR |
| GCCTGAAATTCAGAAAATAT+GGG | 0.572818 | 2_3:+12755617 | Msa0279190:CDS |
| GTTGAGCAGCCGGCAATGAG+TGG | 0.579232 | 2_3:+12754797 | Msa0279190:five_prime_UTR |
| GAGAGCAAATTCTTCGGTAA+GGG | 0.583319 | 2_3:+12755593 | Msa0279190:CDS |
| ACCATTGAAGTTGAGAGCAA+AGG | 0.586214 | 2_3:+12756595 | Msa0279190:CDS |
| CCAATGGAATTCGTTCTCAT+GGG | 0.594296 | 2_3:-12755233 | None:intergenic |
| GTGAGTGACCCTGTAAGAAG+AGG | 0.594502 | 2_3:-12754890 | None:intergenic |
| CCGAGAATGATACAAACCAA+TGG | 0.607701 | 2_3:-12755249 | None:intergenic |
| GCCGGGAAGAAGGCTGCAGA+AGG | 0.608859 | 2_3:+12755380 | Msa0279190:CDS |
| ATTGGTTTGTATCATTCTCG+GGG | 0.611509 | 2_3:+12755251 | Msa0279190:CDS |
| TCTTCAAAGCGAAGATCGCG+GGG | 0.612808 | 2_3:+12755347 | Msa0279190:CDS |
| GCAAATGGTGATCTTCACAT+TGG | 0.619204 | 2_3:+12755793 | Msa0279190:CDS |
| TTTGCAGTCACTGGATAAGG+AGG | 0.625162 | 2_3:+12756556 | Msa0279190:intron |
| GGAAACTTCATTCTTCATGA+CGG | 0.638803 | 2_3:+12755760 | Msa0279190:CDS |
| GTTCTTCAAAGCGAAGATCG+CGG | 0.647075 | 2_3:+12755345 | Msa0279190:CDS |
| AGATCACCATTTGCATATGG+AGG | 0.654345 | 2_3:-12755784 | None:intergenic |
| TGAAATTCAGAAAATATGGG+AGG | 0.659655 | 2_3:+12755620 | Msa0279190:CDS |
| CTCAACCTAACAACCTACGA+GGG | 0.686641 | 2_3:-12754780 | None:intergenic |
| GCTCAACCTAACAACCTACG+AGG | 0.775169 | 2_3:-12754781 | None:intergenic |
| CTTCAAAGCGAAGATCGCGG+GGG | 0.791322 | 2_3:+12755348 | Msa0279190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCTGTT+TGG | - | chr2_3:12755110-12755129 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAATCTGTT+TGG | - | chr2_3:12755110-12755129 | None:intergenic | 10.0% |
| !!! | ATCCTTCAAAATTTTATTTA+AGG | - | chr2_3:12755824-12755843 | None:intergenic | 15.0% |
| !!! | ATATTTTGCTGTTTTTTTTA+TGG | + | chr2_3:12755987-12756006 | Msa0279190:intron | 15.0% |
| !!! | TATTTTGCTGTTTTTTTTAT+GGG | + | chr2_3:12755988-12756007 | Msa0279190:intron | 15.0% |
| !! | TGATATTAAGAAATTTAATG+AGG | - | chr2_3:12756312-12756331 | None:intergenic | 15.0% |
| !!! | TAAATTTGATTTTCTAAACT+TGG | + | chr2_3:12756340-12756359 | Msa0279190:intron | 15.0% |
| !! | TTTAAGCAAACAAAATAAAA+GGG | - | chr2_3:12756444-12756463 | None:intergenic | 15.0% |
| !!! | ATCCTTCAAAATTTTATTTA+AGG | - | chr2_3:12755824-12755843 | None:intergenic | 15.0% |
| !!! | ATATTTTGCTGTTTTTTTTA+TGG | + | chr2_3:12755987-12756006 | Msa0279190:intron | 15.0% |
| !!! | TATTTTGCTGTTTTTTTTAT+GGG | + | chr2_3:12755988-12756007 | Msa0279190:intron | 15.0% |
| !! | TGATATTAAGAAATTTAATG+AGG | - | chr2_3:12756312-12756331 | None:intergenic | 15.0% |
| !!! | TAAATTTGATTTTCTAAACT+TGG | + | chr2_3:12756340-12756359 | Msa0279190:intron | 15.0% |
| !! | TTTAAGCAAACAAAATAAAA+GGG | - | chr2_3:12756444-12756463 | None:intergenic | 15.0% |
| !! | AATATAAACACAACATCATT+CGG | - | chr2_3:12754759-12754778 | None:intergenic | 20.0% |
| !!! | TCAAAATTTTATTTAAGGCA+TGG | - | chr2_3:12755819-12755838 | None:intergenic | 20.0% |
| !!! | TGCCTTAAATAAAATTTTGA+AGG | + | chr2_3:12755819-12755838 | Msa0279190:CDS | 20.0% |
| !! | GGATATTATAAATCGTTATA+AGG | + | chr2_3:12755840-12755859 | Msa0279190:CDS | 20.0% |
| !! | CAGAGTATAAAACAAAAATA+TGG | - | chr2_3:12755925-12755944 | None:intergenic | 20.0% |
| !!! | GCAAAATATTAGTTCTTATA+CGG | - | chr2_3:12755976-12755995 | None:intergenic | 20.0% |
| !!! | AATGAACTTTATAGTTTTGA+AGG | - | chr2_3:12756019-12756038 | None:intergenic | 20.0% |
| !! | TTATTAATAAATACACCTTC+CGG | + | chr2_3:12756232-12756251 | Msa0279190:intron | 20.0% |
| !!! | TTTTTATTTATATTCGAGAC+CGG | - | chr2_3:12756254-12756273 | None:intergenic | 20.0% |
| !! | ATAAATACACGATATAATGA+CGG | + | chr2_3:12756383-12756402 | Msa0279190:intron | 20.0% |
| !! | TTAAGCAAACAAAATAAAAG+GGG | - | chr2_3:12756443-12756462 | None:intergenic | 20.0% |
| !! | GTTTAAGCAAACAAAATAAA+AGG | - | chr2_3:12756445-12756464 | None:intergenic | 20.0% |
| !! | AATATAAACACAACATCATT+CGG | - | chr2_3:12754759-12754778 | None:intergenic | 20.0% |
| !!! | TCAAAATTTTATTTAAGGCA+TGG | - | chr2_3:12755819-12755838 | None:intergenic | 20.0% |
| !!! | TGCCTTAAATAAAATTTTGA+AGG | + | chr2_3:12755819-12755838 | Msa0279190:CDS | 20.0% |
| !! | GGATATTATAAATCGTTATA+AGG | + | chr2_3:12755840-12755859 | Msa0279190:CDS | 20.0% |
| !! | CAGAGTATAAAACAAAAATA+TGG | - | chr2_3:12755925-12755944 | None:intergenic | 20.0% |
| !!! | GCAAAATATTAGTTCTTATA+CGG | - | chr2_3:12755976-12755995 | None:intergenic | 20.0% |
| !!! | AATGAACTTTATAGTTTTGA+AGG | - | chr2_3:12756019-12756038 | None:intergenic | 20.0% |
| !! | TTATTAATAAATACACCTTC+CGG | + | chr2_3:12756232-12756251 | Msa0279190:intron | 20.0% |
| !!! | TTTTTATTTATATTCGAGAC+CGG | - | chr2_3:12756254-12756273 | None:intergenic | 20.0% |
| !! | ATAAATACACGATATAATGA+CGG | + | chr2_3:12756383-12756402 | Msa0279190:intron | 20.0% |
| !! | TTAAGCAAACAAAATAAAAG+GGG | - | chr2_3:12756443-12756462 | None:intergenic | 20.0% |
| !! | GTTTAAGCAAACAAAATAAA+AGG | - | chr2_3:12756445-12756464 | None:intergenic | 20.0% |
| ! | GTGAAATTTGAAGAGAATTA+TGG | - | chr2_3:12754970-12754989 | None:intergenic | 25.0% |
| ! | TAATCGAAAACATAGAAAGT+AGG | - | chr2_3:12754992-12755011 | None:intergenic | 25.0% |
| !!! | TTTTACACTGTTTCTGATAA+TGG | + | chr2_3:12755012-12755031 | Msa0279190:intron | 25.0% |
| !!! | TTTACACTGTTTCTGATAAT+GGG | + | chr2_3:12755013-12755032 | Msa0279190:intron | 25.0% |
| ! | AAACTATTGTACTCATTCAA+AGG | + | chr2_3:12755313-12755332 | Msa0279190:CDS | 25.0% |
| !!! | ATCTTGCCTTTTAATTCAAT+TGG | - | chr2_3:12756071-12756090 | None:intergenic | 25.0% |
| ! | GTGAAATTTGAAGAGAATTA+TGG | - | chr2_3:12754970-12754989 | None:intergenic | 25.0% |
| ! | TAATCGAAAACATAGAAAGT+AGG | - | chr2_3:12754992-12755011 | None:intergenic | 25.0% |
| !!! | TTTTACACTGTTTCTGATAA+TGG | + | chr2_3:12755012-12755031 | Msa0279190:intron | 25.0% |
| !!! | TTTACACTGTTTCTGATAAT+GGG | + | chr2_3:12755013-12755032 | Msa0279190:intron | 25.0% |
| ! | AAACTATTGTACTCATTCAA+AGG | + | chr2_3:12755313-12755332 | Msa0279190:CDS | 25.0% |
| !!! | ATCTTGCCTTTTAATTCAAT+TGG | - | chr2_3:12756071-12756090 | None:intergenic | 25.0% |
| ! | GAAGAATTTGAGGTGATAAA+CGG | - | chr2_3:12754833-12754852 | None:intergenic | 30.0% |
| GAAGAGAATTATGGATAGAA+TGG | - | chr2_3:12754961-12754980 | None:intergenic | 30.0% | |
| !! | TAAACACATCATGACTTGTT+AGG | + | chr2_3:12755445-12755464 | Msa0279190:intron | 30.0% |
| AGAATAAACATGCATTTCCA+AGG | + | chr2_3:12755478-12755497 | Msa0279190:intron | 30.0% | |
| TTGCTTGATTCCTAAAGTAA+AGG | - | chr2_3:12755520-12755539 | None:intergenic | 30.0% | |
| AGCCTGAAATTCAGAAAATA+TGG | + | chr2_3:12755616-12755635 | Msa0279190:CDS | 30.0% | |
| GCCTGAAATTCAGAAAATAT+GGG | + | chr2_3:12755617-12755636 | Msa0279190:CDS | 30.0% | |
| ! | TCCCATATTTTCTGAATTTC+AGG | - | chr2_3:12755621-12755640 | None:intergenic | 30.0% |
| TGAAATTCAGAAAATATGGG+AGG | + | chr2_3:12755620-12755639 | Msa0279190:CDS | 30.0% | |
| ! | TATAAAGTTCATTTTGTGCC+TGG | + | chr2_3:12756026-12756045 | Msa0279190:intron | 30.0% |
| !! | TGCCTTTTAATTCAATTGGT+AGG | - | chr2_3:12756067-12756086 | None:intergenic | 30.0% |
| TCTTAGTAGCATTATGATGA+TGG | + | chr2_3:12756102-12756121 | Msa0279190:intron | 30.0% | |
| CTGCTCAAAGAATGTAATAA+TGG | - | chr2_3:12756512-12756531 | None:intergenic | 30.0% | |
| ATTACATTCTTTGAGCAGTA+TGG | + | chr2_3:12756514-12756533 | Msa0279190:intron | 30.0% | |
| ! | AACTCAGATGTCATCTTTTA+AGG | + | chr2_3:12756646-12756665 | Msa0279190:CDS | 30.0% |
| ! | GAAGAATTTGAGGTGATAAA+CGG | - | chr2_3:12754833-12754852 | None:intergenic | 30.0% |
| GAAGAGAATTATGGATAGAA+TGG | - | chr2_3:12754961-12754980 | None:intergenic | 30.0% | |
| !! | TAAACACATCATGACTTGTT+AGG | + | chr2_3:12755445-12755464 | Msa0279190:intron | 30.0% |
| AGAATAAACATGCATTTCCA+AGG | + | chr2_3:12755478-12755497 | Msa0279190:intron | 30.0% | |
| TTGCTTGATTCCTAAAGTAA+AGG | - | chr2_3:12755520-12755539 | None:intergenic | 30.0% | |
| AGCCTGAAATTCAGAAAATA+TGG | + | chr2_3:12755616-12755635 | Msa0279190:CDS | 30.0% | |
| GCCTGAAATTCAGAAAATAT+GGG | + | chr2_3:12755617-12755636 | Msa0279190:CDS | 30.0% | |
| ! | TCCCATATTTTCTGAATTTC+AGG | - | chr2_3:12755621-12755640 | None:intergenic | 30.0% |
| TGAAATTCAGAAAATATGGG+AGG | + | chr2_3:12755620-12755639 | Msa0279190:CDS | 30.0% | |
| ! | TATAAAGTTCATTTTGTGCC+TGG | + | chr2_3:12756026-12756045 | Msa0279190:intron | 30.0% |
| !! | TGCCTTTTAATTCAATTGGT+AGG | - | chr2_3:12756067-12756086 | None:intergenic | 30.0% |
| TCTTAGTAGCATTATGATGA+TGG | + | chr2_3:12756102-12756121 | Msa0279190:intron | 30.0% | |
| CTGCTCAAAGAATGTAATAA+TGG | - | chr2_3:12756512-12756531 | None:intergenic | 30.0% | |
| ATTACATTCTTTGAGCAGTA+TGG | + | chr2_3:12756514-12756533 | Msa0279190:intron | 30.0% | |
| TGTGTTTATATTTCCCTCGT+AGG | + | chr2_3:12754767-12754786 | Msa0279190:five_prime_UTR | 35.0% | |
| CCATTGAAGAGAAGAATTTG+AGG | - | chr2_3:12754843-12754862 | None:intergenic | 35.0% | |
| CCTCAAATTCTTCTCTTCAA+TGG | + | chr2_3:12754840-12754859 | Msa0279190:exon | 35.0% | |
| ATTGCAAAACTGAATCCTCT+GGG | + | chr2_3:12755146-12755165 | Msa0279190:intron | 35.0% | |
| !! | CCATTGGTTTGTATCATTCT+CGG | + | chr2_3:12755249-12755268 | Msa0279190:CDS | 35.0% |
| !! | CATTGGTTTGTATCATTCTC+GGG | + | chr2_3:12755250-12755269 | Msa0279190:CDS | 35.0% |
| !! | ATTGGTTTGTATCATTCTCG+GGG | + | chr2_3:12755251-12755270 | Msa0279190:CDS | 35.0% |
| ACATAACCTGCCTTTACTTT+AGG | + | chr2_3:12755507-12755526 | Msa0279190:intron | 35.0% | |
| TTGATTCCTAAAGTAAAGGC+AGG | - | chr2_3:12755516-12755535 | None:intergenic | 35.0% | |
| TGGTATGAGAGCAAATTCTT+CGG | + | chr2_3:12755587-12755606 | Msa0279190:CDS | 35.0% | |
| AGAGTTGCAGACAAAAATAG+TGG | + | chr2_3:12755660-12755679 | Msa0279190:CDS | 35.0% | |
| AACTACGATGGGAAATCTAA+GGG | - | chr2_3:12755703-12755722 | None:intergenic | 35.0% | |
| TAACTACGATGGGAAATCTA+AGG | - | chr2_3:12755704-12755723 | None:intergenic | 35.0% | |
| GATTTCCCATCGTAGTTATT+TGG | + | chr2_3:12755706-12755725 | Msa0279190:intron | 35.0% | |
| CAAGTCCAAATAACTACGAT+GGG | - | chr2_3:12755714-12755733 | None:intergenic | 35.0% | |
| GGAAACTTCATTCTTCATGA+CGG | + | chr2_3:12755760-12755779 | Msa0279190:CDS | 35.0% | |
| TGAAGATCACCATTTGCATA+TGG | - | chr2_3:12755790-12755809 | None:intergenic | 35.0% | |
| ! | AACTGAAAGCATAGGTTCAA+AGG | - | chr2_3:12755878-12755897 | None:intergenic | 35.0% |
| GGCCTACCAATTGAATTAAA+AGG | + | chr2_3:12756062-12756081 | Msa0279190:intron | 35.0% | |
| TATTTATATTCGAGACCGGA+AGG | - | chr2_3:12756250-12756269 | None:intergenic | 35.0% | |
| !! | CTGAGTTTTAACAGTGTCTT+TGG | - | chr2_3:12756633-12756652 | None:intergenic | 35.0% |
| TGTGTTTATATTTCCCTCGT+AGG | + | chr2_3:12754767-12754786 | Msa0279190:five_prime_UTR | 35.0% | |
| CCATTGAAGAGAAGAATTTG+AGG | - | chr2_3:12754843-12754862 | None:intergenic | 35.0% | |
| CCTCAAATTCTTCTCTTCAA+TGG | + | chr2_3:12754840-12754859 | Msa0279190:exon | 35.0% | |
| ATTGCAAAACTGAATCCTCT+GGG | + | chr2_3:12755146-12755165 | Msa0279190:intron | 35.0% | |
| !! | CCATTGGTTTGTATCATTCT+CGG | + | chr2_3:12755249-12755268 | Msa0279190:CDS | 35.0% |
| !! | CATTGGTTTGTATCATTCTC+GGG | + | chr2_3:12755250-12755269 | Msa0279190:CDS | 35.0% |
| !! | ATTGGTTTGTATCATTCTCG+GGG | + | chr2_3:12755251-12755270 | Msa0279190:CDS | 35.0% |
| ACATAACCTGCCTTTACTTT+AGG | + | chr2_3:12755507-12755526 | Msa0279190:intron | 35.0% | |
| TTGATTCCTAAAGTAAAGGC+AGG | - | chr2_3:12755516-12755535 | None:intergenic | 35.0% | |
| TGGTATGAGAGCAAATTCTT+CGG | + | chr2_3:12755587-12755606 | Msa0279190:CDS | 35.0% | |
| AGAGTTGCAGACAAAAATAG+TGG | + | chr2_3:12755660-12755679 | Msa0279190:CDS | 35.0% | |
| AACTACGATGGGAAATCTAA+GGG | - | chr2_3:12755703-12755722 | None:intergenic | 35.0% | |
| TAACTACGATGGGAAATCTA+AGG | - | chr2_3:12755704-12755723 | None:intergenic | 35.0% | |
| GATTTCCCATCGTAGTTATT+TGG | + | chr2_3:12755706-12755725 | Msa0279190:intron | 35.0% | |
| CAAGTCCAAATAACTACGAT+GGG | - | chr2_3:12755714-12755733 | None:intergenic | 35.0% | |
| GGAAACTTCATTCTTCATGA+CGG | + | chr2_3:12755760-12755779 | Msa0279190:CDS | 35.0% | |
| TGAAGATCACCATTTGCATA+TGG | - | chr2_3:12755790-12755809 | None:intergenic | 35.0% | |
| ! | AACTGAAAGCATAGGTTCAA+AGG | - | chr2_3:12755878-12755897 | None:intergenic | 35.0% |
| GGCCTACCAATTGAATTAAA+AGG | + | chr2_3:12756062-12756081 | Msa0279190:intron | 35.0% | |
| TATTTATATTCGAGACCGGA+AGG | - | chr2_3:12756250-12756269 | None:intergenic | 35.0% | |
| !! | CTGAGTTTTAACAGTGTCTT+TGG | - | chr2_3:12756633-12756652 | None:intergenic | 35.0% |
| TATTTCCCTCGTAGGTTGTT+AGG | + | chr2_3:12754775-12754794 | Msa0279190:five_prime_UTR | 40.0% | |
| TCATGCAAACCTCTTCTTAC+AGG | + | chr2_3:12754881-12754900 | Msa0279190:CDS | 40.0% | |
| CATGCAAACCTCTTCTTACA+GGG | + | chr2_3:12754882-12754901 | Msa0279190:CDS | 40.0% | |
| ! | AAGAAAGAGCGTGGTTTGAA+TGG | - | chr2_3:12754938-12754957 | None:intergenic | 40.0% |
| ATAGAATGGAAGAAAGAGCG+TGG | - | chr2_3:12754947-12754966 | None:intergenic | 40.0% | |
| CGAACACATAATCTGCAACA+AGG | - | chr2_3:12755079-12755098 | None:intergenic | 40.0% | |
| CATTGCAAAACTGAATCCTC+TGG | + | chr2_3:12755145-12755164 | Msa0279190:intron | 40.0% | |
| TATCAAGCTAACATTCCCAG+AGG | - | chr2_3:12755164-12755183 | None:intergenic | 40.0% | |
| CCAATGGAATTCGTTCTCAT+GGG | - | chr2_3:12755236-12755255 | None:intergenic | 40.0% | |
| ACCAATGGAATTCGTTCTCA+TGG | - | chr2_3:12755237-12755256 | None:intergenic | 40.0% | |
| CCGAGAATGATACAAACCAA+TGG | - | chr2_3:12755252-12755271 | None:intergenic | 40.0% | |
| GCAGGTTATGTAACTAACCT+TGG | - | chr2_3:12755498-12755517 | None:intergenic | 40.0% | |
| CTCATACCAAATGCTGTCTT+GGG | - | chr2_3:12755576-12755595 | None:intergenic | 40.0% | |
| TCTCATACCAAATGCTGTCT+TGG | - | chr2_3:12755577-12755596 | None:intergenic | 40.0% | |
| TGAGAGCAAATTCTTCGGTA+AGG | + | chr2_3:12755592-12755611 | Msa0279190:CDS | 40.0% | |
| GAGAGCAAATTCTTCGGTAA+GGG | + | chr2_3:12755593-12755612 | Msa0279190:CDS | 40.0% | |
| ACTACGATGGGAAATCTAAG+GGG | - | chr2_3:12755702-12755721 | None:intergenic | 40.0% | |
| GCAAGTCCAAATAACTACGA+TGG | - | chr2_3:12755715-12755734 | None:intergenic | 40.0% | |
| TATGCTTCAACACCTTGATC+AGG | + | chr2_3:12755738-12755757 | Msa0279190:intron | 40.0% | |
| ATGCTTCAACACCTTGATCA+GGG | + | chr2_3:12755739-12755758 | Msa0279190:intron | 40.0% | |
| GAATGAAGTTTCCCTGATCA+AGG | - | chr2_3:12755753-12755772 | None:intergenic | 40.0% | |
| AGATCACCATTTGCATATGG+AGG | - | chr2_3:12755787-12755806 | None:intergenic | 40.0% | |
| GCAAATGGTGATCTTCACAT+TGG | + | chr2_3:12755793-12755812 | Msa0279190:CDS | 40.0% | |
| ! | CAGCAACAAACTGAAAGCAT+AGG | - | chr2_3:12755886-12755905 | None:intergenic | 40.0% |
| ! | AAGTTCATTTTGTGCCTGGA+TGG | + | chr2_3:12756030-12756049 | Msa0279190:intron | 40.0% |
| ! | AGTTCATTTTGTGCCTGGAT+GGG | + | chr2_3:12756031-12756050 | Msa0279190:intron | 40.0% |
| !! | AGTAGCATTATGATGATGGC+TGG | + | chr2_3:12756106-12756125 | Msa0279190:intron | 40.0% |
| ! | GTTTGCAACATGTCATTTCC+AGG | + | chr2_3:12756183-12756202 | Msa0279190:intron | 40.0% |
| ! | CATTTCAGTTTTGCAGTCAC+TGG | + | chr2_3:12756547-12756566 | Msa0279190:intron | 40.0% |
| ! | AGTTTTGCAGTCACTGGATA+AGG | + | chr2_3:12756553-12756572 | Msa0279190:intron | 40.0% |
| ACCATTGAAGTTGAGAGCAA+AGG | + | chr2_3:12756595-12756614 | Msa0279190:CDS | 40.0% | |
| TATTTCCCTCGTAGGTTGTT+AGG | + | chr2_3:12754775-12754794 | Msa0279190:five_prime_UTR | 40.0% | |
| TCATGCAAACCTCTTCTTAC+AGG | + | chr2_3:12754881-12754900 | Msa0279190:CDS | 40.0% | |
| CATGCAAACCTCTTCTTACA+GGG | + | chr2_3:12754882-12754901 | Msa0279190:CDS | 40.0% | |
| ! | AAGAAAGAGCGTGGTTTGAA+TGG | - | chr2_3:12754938-12754957 | None:intergenic | 40.0% |
| ATAGAATGGAAGAAAGAGCG+TGG | - | chr2_3:12754947-12754966 | None:intergenic | 40.0% | |
| CGAACACATAATCTGCAACA+AGG | - | chr2_3:12755079-12755098 | None:intergenic | 40.0% | |
| CATTGCAAAACTGAATCCTC+TGG | + | chr2_3:12755145-12755164 | Msa0279190:intron | 40.0% | |
| TATCAAGCTAACATTCCCAG+AGG | - | chr2_3:12755164-12755183 | None:intergenic | 40.0% | |
| CCAATGGAATTCGTTCTCAT+GGG | - | chr2_3:12755236-12755255 | None:intergenic | 40.0% | |
| ACCAATGGAATTCGTTCTCA+TGG | - | chr2_3:12755237-12755256 | None:intergenic | 40.0% | |
| CCGAGAATGATACAAACCAA+TGG | - | chr2_3:12755252-12755271 | None:intergenic | 40.0% | |
| GCAGGTTATGTAACTAACCT+TGG | - | chr2_3:12755498-12755517 | None:intergenic | 40.0% | |
| CTCATACCAAATGCTGTCTT+GGG | - | chr2_3:12755576-12755595 | None:intergenic | 40.0% | |
| TCTCATACCAAATGCTGTCT+TGG | - | chr2_3:12755577-12755596 | None:intergenic | 40.0% | |
| TGAGAGCAAATTCTTCGGTA+AGG | + | chr2_3:12755592-12755611 | Msa0279190:CDS | 40.0% | |
| GAGAGCAAATTCTTCGGTAA+GGG | + | chr2_3:12755593-12755612 | Msa0279190:CDS | 40.0% | |
| ACTACGATGGGAAATCTAAG+GGG | - | chr2_3:12755702-12755721 | None:intergenic | 40.0% | |
| GCAAGTCCAAATAACTACGA+TGG | - | chr2_3:12755715-12755734 | None:intergenic | 40.0% | |
| TATGCTTCAACACCTTGATC+AGG | + | chr2_3:12755738-12755757 | Msa0279190:intron | 40.0% | |
| ATGCTTCAACACCTTGATCA+GGG | + | chr2_3:12755739-12755758 | Msa0279190:intron | 40.0% | |
| GAATGAAGTTTCCCTGATCA+AGG | - | chr2_3:12755753-12755772 | None:intergenic | 40.0% | |
| AGATCACCATTTGCATATGG+AGG | - | chr2_3:12755787-12755806 | None:intergenic | 40.0% | |
| GCAAATGGTGATCTTCACAT+TGG | + | chr2_3:12755793-12755812 | Msa0279190:CDS | 40.0% | |
| ! | CAGCAACAAACTGAAAGCAT+AGG | - | chr2_3:12755886-12755905 | None:intergenic | 40.0% |
| ! | AAGTTCATTTTGTGCCTGGA+TGG | + | chr2_3:12756030-12756049 | Msa0279190:intron | 40.0% |
| ! | AGTTCATTTTGTGCCTGGAT+GGG | + | chr2_3:12756031-12756050 | Msa0279190:intron | 40.0% |
| !! | AGTAGCATTATGATGATGGC+TGG | + | chr2_3:12756106-12756125 | Msa0279190:intron | 40.0% |
| ! | GTTTGCAACATGTCATTTCC+AGG | + | chr2_3:12756183-12756202 | Msa0279190:intron | 40.0% |
| ! | CATTTCAGTTTTGCAGTCAC+TGG | + | chr2_3:12756547-12756566 | Msa0279190:intron | 40.0% |
| ! | AGTTTTGCAGTCACTGGATA+AGG | + | chr2_3:12756553-12756572 | Msa0279190:intron | 40.0% |
| ACCATTGAAGTTGAGAGCAA+AGG | + | chr2_3:12756595-12756614 | Msa0279190:CDS | 40.0% | |
| CTCAACCTAACAACCTACGA+GGG | - | chr2_3:12754783-12754802 | None:intergenic | 45.0% | |
| ATCTACACTCCACTCATTGC+CGG | - | chr2_3:12754809-12754828 | None:intergenic | 45.0% | |
| TTGCATGAAGAGAGCGAAAG+TGG | - | chr2_3:12754869-12754888 | None:intergenic | 45.0% | |
| CCCATGAGAACGAATTCCAT+TGG | + | chr2_3:12755233-12755252 | Msa0279190:CDS | 45.0% | |
| GTTCTTCAAAGCGAAGATCG+CGG | + | chr2_3:12755345-12755364 | Msa0279190:CDS | 45.0% | |
| TTCTTCAAAGCGAAGATCGC+GGG | + | chr2_3:12755346-12755365 | Msa0279190:CDS | 45.0% | |
| GATCTTCCCAAGACAGCATT+TGG | + | chr2_3:12755567-12755586 | Msa0279190:CDS | 45.0% | |
| !! | TGATGGCTGGCTTTACTTTG+TGG | + | chr2_3:12756119-12756138 | Msa0279190:intron | 45.0% |
| CCAAGAACTATCTACATGCC+TGG | - | chr2_3:12756204-12756223 | None:intergenic | 45.0% | |
| CCAGGCATGTAGATAGTTCT+TGG | + | chr2_3:12756201-12756220 | Msa0279190:intron | 45.0% | |
| TTTGCAGTCACTGGATAAGG+AGG | + | chr2_3:12756556-12756575 | Msa0279190:intron | 45.0% | |
| GCCTTTGCTCTCAACTTCAA+TGG | - | chr2_3:12756599-12756618 | None:intergenic | 45.0% | |
| CTCAACCTAACAACCTACGA+GGG | - | chr2_3:12754783-12754802 | None:intergenic | 45.0% | |
| ATCTACACTCCACTCATTGC+CGG | - | chr2_3:12754809-12754828 | None:intergenic | 45.0% | |
| TTGCATGAAGAGAGCGAAAG+TGG | - | chr2_3:12754869-12754888 | None:intergenic | 45.0% | |
| CCCATGAGAACGAATTCCAT+TGG | + | chr2_3:12755233-12755252 | Msa0279190:CDS | 45.0% | |
| GTTCTTCAAAGCGAAGATCG+CGG | + | chr2_3:12755345-12755364 | Msa0279190:CDS | 45.0% | |
| TTCTTCAAAGCGAAGATCGC+GGG | + | chr2_3:12755346-12755365 | Msa0279190:CDS | 45.0% | |
| GATCTTCCCAAGACAGCATT+TGG | + | chr2_3:12755567-12755586 | Msa0279190:CDS | 45.0% | |
| !! | TGATGGCTGGCTTTACTTTG+TGG | + | chr2_3:12756119-12756138 | Msa0279190:intron | 45.0% |
| CCAAGAACTATCTACATGCC+TGG | - | chr2_3:12756204-12756223 | None:intergenic | 45.0% | |
| CCAGGCATGTAGATAGTTCT+TGG | + | chr2_3:12756201-12756220 | Msa0279190:intron | 45.0% | |
| TTTGCAGTCACTGGATAAGG+AGG | + | chr2_3:12756556-12756575 | Msa0279190:intron | 45.0% | |
| GCCTTTGCTCTCAACTTCAA+TGG | - | chr2_3:12756599-12756618 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTAGTTA+TGG | + | chr2_3:12755116-12755135 | Msa0279190:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTAGTTA+TGG | + | chr2_3:12755116-12755135 | Msa0279190:intron | 5.0% |
| GCTCAACCTAACAACCTACG+AGG | - | chr2_3:12754784-12754803 | None:intergenic | 50.0% | |
| !! | AGGTTGTTAGGTTGAGCAGC+CGG | + | chr2_3:12754787-12754806 | Msa0279190:five_prime_UTR | 50.0% |
| GTGAGTGACCCTGTAAGAAG+AGG | - | chr2_3:12754893-12754912 | None:intergenic | 50.0% | |
| TCTTCAAAGCGAAGATCGCG+GGG | + | chr2_3:12755347-12755366 | Msa0279190:CDS | 50.0% | |
| GACGGTCCTCCATATGCAAA+TGG | + | chr2_3:12755778-12755797 | Msa0279190:CDS | 50.0% | |
| GCTCAACCTAACAACCTACG+AGG | - | chr2_3:12754784-12754803 | None:intergenic | 50.0% | |
| !! | AGGTTGTTAGGTTGAGCAGC+CGG | + | chr2_3:12754787-12754806 | Msa0279190:five_prime_UTR | 50.0% |
| GTGAGTGACCCTGTAAGAAG+AGG | - | chr2_3:12754893-12754912 | None:intergenic | 50.0% | |
| TCTTCAAAGCGAAGATCGCG+GGG | + | chr2_3:12755347-12755366 | Msa0279190:CDS | 50.0% | |
| GACGGTCCTCCATATGCAAA+TGG | + | chr2_3:12755778-12755797 | Msa0279190:CDS | 50.0% | |
| CTTCAAAGCGAAGATCGCGG+GGG | + | chr2_3:12755348-12755367 | Msa0279190:CDS | 55.0% | |
| ACCTTCTGCAGCCTTCTTCC+CGG | - | chr2_3:12755384-12755403 | None:intergenic | 55.0% | |
| GTGCCTGGATGGGATTGTCA+TGG | + | chr2_3:12756041-12756060 | Msa0279190:intron | 55.0% | |
| AGGCCATGACAATCCCATCC+AGG | - | chr2_3:12756047-12756066 | None:intergenic | 55.0% | |
| CTTCAAAGCGAAGATCGCGG+GGG | + | chr2_3:12755348-12755367 | Msa0279190:CDS | 55.0% | |
| ACCTTCTGCAGCCTTCTTCC+CGG | - | chr2_3:12755384-12755403 | None:intergenic | 55.0% | |
| GTGCCTGGATGGGATTGTCA+TGG | + | chr2_3:12756041-12756060 | Msa0279190:intron | 55.0% | |
| AGGCCATGACAATCCCATCC+AGG | - | chr2_3:12756047-12756066 | None:intergenic | 55.0% | |
| GTTGAGCAGCCGGCAATGAG+TGG | + | chr2_3:12754797-12754816 | Msa0279190:five_prime_UTR | 60.0% | |
| AAGATCGCGGGGGCCTGTTA+TGG | + | chr2_3:12755358-12755377 | Msa0279190:CDS | 60.0% | |
| GCCTGTTATGGCCGGGAAGA+AGG | + | chr2_3:12755370-12755389 | Msa0279190:CDS | 60.0% | |
| GCCTTCTTCCCGGCCATAAC+AGG | - | chr2_3:12755374-12755393 | None:intergenic | 60.0% | |
| GTTGAGCAGCCGGCAATGAG+TGG | + | chr2_3:12754797-12754816 | Msa0279190:five_prime_UTR | 60.0% | |
| AAGATCGCGGGGGCCTGTTA+TGG | + | chr2_3:12755358-12755377 | Msa0279190:CDS | 60.0% | |
| GCCTGTTATGGCCGGGAAGA+AGG | + | chr2_3:12755370-12755389 | Msa0279190:CDS | 60.0% | |
| GCCTTCTTCCCGGCCATAAC+AGG | - | chr2_3:12755374-12755393 | None:intergenic | 60.0% | |
| GCCGGGAAGAAGGCTGCAGA+AGG | + | chr2_3:12755380-12755399 | Msa0279190:CDS | 65.0% | |
| GCCGGGAAGAAGGCTGCAGA+AGG | + | chr2_3:12755380-12755399 | Msa0279190:CDS | 65.0% | |
| TCGCGGGGGCCTGTTATGGC+CGG | + | chr2_3:12755362-12755381 | Msa0279190:CDS | 70.0% | |
| TCGCGGGGGCCTGTTATGGC+CGG | + | chr2_3:12755362-12755381 | Msa0279190:CDS | 70.0% | |
| CGCGGGGGCCTGTTATGGCC+GGG | + | chr2_3:12755363-12755382 | Msa0279190:CDS | 75.0% | |
| CGCGGGGGCCTGTTATGGCC+GGG | + | chr2_3:12755363-12755382 | Msa0279190:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 12754742 | 12756667 | 12754742 | ID=Msa0279190;Name=Msa0279190 |
| chr2_3 | mRNA | 12754742 | 12756667 | 12754742 | ID=Msa0279190-mRNA-1;Parent=Msa0279190;Name=Msa0279190-mRNA-1;_AED=0.12;_eAED=0.12;_QI=117|0.75|0.8|0.8|1|0.8|5|0|201 |
| chr2_3 | exon | 12754742 | 12754903 | 12754742 | ID=Msa0279190-mRNA-1:exon:5547;Parent=Msa0279190-mRNA-1 |
| chr2_3 | exon | 12755206 | 12755401 | 12755206 | ID=Msa0279190-mRNA-1:exon:5548;Parent=Msa0279190-mRNA-1 |
| chr2_3 | exon | 12755529 | 12755683 | 12755529 | ID=Msa0279190-mRNA-1:exon:5549;Parent=Msa0279190-mRNA-1 |
| chr2_3 | exon | 12755760 | 12755861 | 12755760 | ID=Msa0279190-mRNA-1:exon:5550;Parent=Msa0279190-mRNA-1 |
| chr2_3 | exon | 12756563 | 12756667 | 12756563 | ID=Msa0279190-mRNA-1:exon:5551;Parent=Msa0279190-mRNA-1 |
| chr2_3 | five_prime_UTR | 12754742 | 12754858 | 12754742 | ID=Msa0279190-mRNA-1:five_prime_utr;Parent=Msa0279190-mRNA-1 |
| chr2_3 | CDS | 12754859 | 12754903 | 12754859 | ID=Msa0279190-mRNA-1:cds;Parent=Msa0279190-mRNA-1 |
| chr2_3 | CDS | 12755206 | 12755401 | 12755206 | ID=Msa0279190-mRNA-1:cds;Parent=Msa0279190-mRNA-1 |
| chr2_3 | CDS | 12755529 | 12755683 | 12755529 | ID=Msa0279190-mRNA-1:cds;Parent=Msa0279190-mRNA-1 |
| chr2_3 | CDS | 12755760 | 12755861 | 12755760 | ID=Msa0279190-mRNA-1:cds;Parent=Msa0279190-mRNA-1 |
| chr2_3 | CDS | 12756563 | 12756667 | 12756563 | ID=Msa0279190-mRNA-1:cds;Parent=Msa0279190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
