AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434630 MtrunA17_Chr3g0141051 94.361 532 8 2 1 511 1 531 0.0 1015
Msa0434630 MtrunA17_Chr5g0428201 76.994 539 93 5 1 508 1 539 0.0 833
Msa0434630 MtrunA17_Chr4g0049411 64.286 504 156 3 31 511 27 529 0.0 633
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434630 AT1G58290.1 72.661 545 113 6 1 511 1 543 0.0 773
Msa0434630 AT1G09940.1 69.944 539 121 10 1 508 1 529 0.0 736
Msa0434630 AT2G31250.1 57.278 529 193 11 1 505 1 520 0.0 569

Find 121 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTCATCTTTCATGAATAA+TGG 0.203444 3_2:-87545904 None:intergenic
TGGCAGCCACAACCTCTTTA+AGG 0.223188 3_2:-87546053 None:intergenic
ATGCAATAACTGTCGGAAAA+AGG 0.258377 3_2:+87545557 Msa0434630:CDS
CACTTTCTCCGGTCCCAAAT+TGG 0.259254 3_2:+87544068 Msa0434630:CDS
TGTTGGATCCATCTCACTTC+TGG 0.271267 3_2:-87546473 None:intergenic
AGAGACTGAAATATCTGTTT+TGG 0.298449 3_2:+87546419 Msa0434630:CDS
CGTCATCTTTCATGAATAAT+GGG 0.303979 3_2:-87545903 None:intergenic
GAGGAATAGAGACTCCAATT+TGG 0.305860 3_2:-87544082 None:intergenic
ATGGTCCAATGCAACATTTA+AGG 0.316246 3_2:+87546322 Msa0434630:CDS
TGTTCTCAAGGGTCTCAGTT+AGG 0.318272 3_2:-87546368 None:intergenic
CTCTTTGACACCACGGTGTT+GGG 0.321524 3_2:-87545231 None:intergenic
AGAACCACTTTCACTCAAAA+AGG 0.332496 3_2:+87544162 Msa0434630:CDS
CCTCCAACATCTTGACTTGC+TGG 0.341053 3_2:-87545940 None:intergenic
GGTCTTGAGTCTCTTGTATT+GGG 0.347849 3_2:+87545442 Msa0434630:CDS
ATATATCTCCATTCGGTTGC+AGG 0.348244 3_2:-87545195 None:intergenic
TGGTCTTGAGTCTCTTGTAT+TGG 0.351928 3_2:+87545441 Msa0434630:CDS
AGGAATAGAGACTCCAATTT+GGG 0.358382 3_2:-87544081 None:intergenic
GCATTATCATGCGAGGCTTC+AGG 0.359923 3_2:-87545658 None:intergenic
AAAGCTGGTCATCAAACATT+TGG 0.383472 3_2:+87545714 Msa0434630:CDS
TCCTCAAATCTTCTTCTTCG+AGG 0.388396 3_2:+87544100 Msa0434630:CDS
GCTCTAGGCCATTCTGCTTC+CGG 0.389081 3_2:-87545119 None:intergenic
AGTTGAAACAATTTGAAGCT+TGG 0.400753 3_2:+87546130 Msa0434630:CDS
CAAGAGAGCATTTCTGAAAG+AGG 0.405927 3_2:-87545835 None:intergenic
GAGCCTATGCTGAAAGGATC+AGG 0.406263 3_2:+87546193 Msa0434630:CDS
GGACAAGGAGTTAACGGCTT+TGG 0.406926 3_2:+87545508 Msa0434630:CDS
TGCTCGCAAAGCTCTGAAAC+AGG 0.413070 3_2:-87545364 None:intergenic
GTTCTCAAGGGTCTCAGTTA+GGG 0.416753 3_2:-87546367 None:intergenic
GCCGTTTCAACCACTTTCTC+CGG 0.422111 3_2:+87544057 Msa0434630:CDS
CAGAATTCTGATCAAACTAA+TGG 0.426228 3_2:+87544204 Msa0434630:CDS
AACTGATAAATGGGTGGGAA+TGG 0.427322 3_2:-87544127 None:intergenic
TCTAAGCCGATCCTCTTTGT+TGG 0.438084 3_2:-87546073 None:intergenic
GAACAGAAATGTCGATGAAA+AGG 0.454173 3_2:-87545969 None:intergenic
GCAGAGACTAATATTGCTGC+TGG 0.454882 3_2:+87545586 Msa0434630:CDS
ATGGAAGCGCAGGCGATCAT+TGG 0.455997 3_2:+87546102 Msa0434630:CDS
CAAGGGTCTCAGTTAGGGTT+CGG 0.456916 3_2:-87546362 None:intergenic
AGCTGTGGATGATCTTAGTC+GGG 0.458876 3_2:+87546278 Msa0434630:CDS
GTTAAGCAAGTTGTCAAAGT+TGG 0.466075 3_2:+87545487 Msa0434630:CDS
AAAGTTGGACAAGGAGTTAA+CGG 0.467613 3_2:+87545502 Msa0434630:CDS
TGCTGAGCTTGAGAAATGCT+TGG 0.471267 3_2:+87546218 Msa0434630:CDS
TGAGAAATGCTTGGGTAAGA+TGG 0.483561 3_2:+87546227 Msa0434630:CDS
TTAGTCGGGGTATTGTGAAT+AGG 0.483898 3_2:+87546292 Msa0434630:CDS
TGAAGCTTGGAGAGACTCGC+TGG 0.485909 3_2:+87546143 Msa0434630:CDS
GAGTTCAGCTGCCGTGGAGT+TGG 0.487465 3_2:+87545621 Msa0434630:CDS
ATCAAACATTTGGTTTCGAA+AGG 0.487528 3_2:+87545724 Msa0434630:CDS
GCCTCGAAGAAGAAGATTTG+AGG 0.488553 3_2:-87544101 None:intergenic
GGCTTTGGAAGAAACATTAG+TGG 0.489386 3_2:+87545523 Msa0434630:CDS
TTCTGTGAGTTCAGCTGCCG+TGG 0.490671 3_2:+87545615 Msa0434630:CDS
CAATGTTGATGACCTTAAAG+AGG 0.492073 3_2:+87546041 Msa0434630:CDS
TTTCAGAGCTTTGCGAGCAC+CGG 0.496728 3_2:+87545368 Msa0434630:CDS
AGGATGCTGATTATCGGTGC+TGG 0.497285 3_2:+87545682 Msa0434630:CDS
TGCTGGGAAGATGGGAAAGC+TGG 0.498604 3_2:+87545699 Msa0434630:CDS
GATTATCGGTGCTGGGAAGA+TGG 0.501802 3_2:+87545690 Msa0434630:CDS
TCAAAGCATGCATGTTCTCA+AGG 0.503890 3_2:-87546380 None:intergenic
CCTCTTTGACACCACGGTGT+TGG 0.505749 3_2:-87545232 None:intergenic
ATTGTGAATAGGATGCTTCA+TGG 0.507796 3_2:+87546303 Msa0434630:CDS
TCACACCTTAAATGTTGCAT+TGG 0.511482 3_2:-87546327 None:intergenic
ATTTCTGTTCCTCGAAATGT+TGG 0.512769 3_2:+87545982 Msa0434630:CDS
GAGGAGCTCAAGAGCAGAGA+GGG 0.516677 3_2:-87544238 None:intergenic
ATTATCGGTGCTGGGAAGAT+GGG 0.517250 3_2:+87545691 Msa0434630:CDS
GAGTCTCTTGTATTGGGAGA+AGG 0.518033 3_2:+87545448 Msa0434630:CDS
TTCGAAAGGTTGCACAAGGA+TGG 0.522727 3_2:+87545738 Msa0434630:CDS
GCTGAGCTTGAGAAATGCTT+GGG 0.524284 3_2:+87546219 Msa0434630:CDS
ATGCAACATTTAAGGTGTGA+TGG 0.525826 3_2:+87546330 Msa0434630:CDS
CAGAGACTAATATTGCTGCT+GGG 0.527457 3_2:+87545587 Msa0434630:CDS
AATGCCAGGATGCTGATTAT+CGG 0.528010 3_2:+87545676 Msa0434630:CDS
ACACATGAACCAACATTTCG+AGG 0.528910 3_2:-87545991 None:intergenic
AGAAGGTCAAATTCTTGCAC+AGG 0.531198 3_2:+87545465 Msa0434630:CDS
ACCGGAGAAAGTGGTTGAAA+CGG 0.531801 3_2:-87544058 None:intergenic
AAGCTGTGGATGATCTTAGT+CGG 0.534663 3_2:+87546277 Msa0434630:CDS
GGAGCAGAAAGTTCGAGCTA+AGG 0.538367 3_2:+87546440 Msa0434630:CDS
TAGAAAAGCAATGGAAGCGC+AGG 0.539856 3_2:+87546092 Msa0434630:CDS
TGCAACATTTAAGGTGTGAT+GGG 0.541340 3_2:+87546331 Msa0434630:CDS
CAATTTGGGACCGGAGAAAG+TGG 0.542238 3_2:-87544067 None:intergenic
CCGTGGTGTCAAAGAGGTCA+TGG 0.542278 3_2:+87545238 Msa0434630:CDS
TTGTGTTTCTGAAGCAGATG+TGG 0.542350 3_2:+87545855 Msa0434630:CDS
AAGCCTCGCATGATAATGCC+AGG 0.544469 3_2:+87545662 Msa0434630:CDS
TTCAAGCATGCAATAACTGT+CGG 0.546104 3_2:+87545550 Msa0434630:CDS
GGCTTCAGGTAGCTTCATAT+AGG 0.552546 3_2:-87545644 None:intergenic
AAACAGATATTTCAGTCTCT+AGG 0.555709 3_2:-87546416 None:intergenic
CATCTTGACTTGCTGGAGGA+AGG 0.557482 3_2:-87545933 None:intergenic
TAGAGACTCCAATTTGGGAC+CGG 0.563889 3_2:-87544076 None:intergenic
AGCACCGATAATCAGCATCC+TGG 0.566229 3_2:-87545680 None:intergenic
GGATGCTGATTATCGGTGCT+GGG 0.570581 3_2:+87545683 Msa0434630:CDS
AATTGAGAGCCTATGCTGAA+AGG 0.571766 3_2:+87546187 Msa0434630:CDS
CAAAGCATGCATGTTCTCAA+GGG 0.572276 3_2:-87546379 None:intergenic
TGATGACCTTAAAGAGGTTG+TGG 0.573814 3_2:+87546047 Msa0434630:CDS
AGGCCATTCTGCTTCCGGAA+TGG 0.575247 3_2:-87545114 None:intergenic
AAAGAAGACGCGGAAAGCTG+TGG 0.575501 3_2:+87546263 Msa0434630:CDS
CGACGACATATATCTCCATT+CGG 0.575634 3_2:-87545202 None:intergenic
CTCAAGAGCAGAGAGGGTGG+TGG 0.576095 3_2:-87544232 None:intergenic
TTGCCATTCCGGAAGCAGAA+TGG 0.576827 3_2:+87545111 Msa0434630:CDS
GCAGAAAGTTCGAGCTAAGG+TGG 0.577492 3_2:+87546443 Msa0434630:CDS
CCAGCAAGTCAAGATGTTGG+AGG 0.577979 3_2:+87545940 Msa0434630:CDS
CACAACTCTGCAATAGCTCT+AGG 0.584214 3_2:-87545134 None:intergenic
GGATCGGCTTAGAAAAGCAA+TGG 0.585302 3_2:+87546083 Msa0434630:CDS
GAGAAATGCTTGGGTAAGAT+GGG 0.585895 3_2:+87546228 Msa0434630:CDS
TGCAATACGCGAAGAACTGA+AGG 0.590760 3_2:+87545792 Msa0434630:CDS
TCTGAGCACCTGCAACCGAA+TGG 0.593474 3_2:+87545187 Msa0434630:CDS
AACCCTGATCCTTTCAGCAT+AGG 0.597458 3_2:-87546196 None:intergenic
AGAGACTAATATTGCTGCTG+GGG 0.599145 3_2:+87545588 Msa0434630:CDS
TATTGCAGCAACTCTCTCCT+CGG 0.599628 3_2:-87545776 None:intergenic
CAAGTTGTCAAAGTTGGACA+AGG 0.600402 3_2:+87545493 Msa0434630:CDS
GAGCTCAAGAGCAGAGAGGG+TGG 0.603642 3_2:-87544235 None:intergenic
CCTCCAGCAAGTCAAGATGT+TGG 0.604438 3_2:+87545937 Msa0434630:CDS
TGGTTTCGAAAGGTTGCACA+AGG 0.613006 3_2:+87545734 Msa0434630:CDS
AAATGTCGATGAAAAGGCGA+AGG 0.620011 3_2:-87545963 None:intergenic
TGGCTGCCAACAAAGAGGAT+CGG 0.623928 3_2:+87546067 Msa0434630:CDS
CCAACACCGTGGTGTCAAAG+AGG 0.625380 3_2:+87545232 Msa0434630:CDS
AGCCTATGCTGAAAGGATCA+GGG 0.627363 3_2:+87546194 Msa0434630:CDS
GCAAAGCTCTGAAACAGGAA+CGG 0.637910 3_2:-87545359 None:intergenic
GTGTCAAAGAGGTCATGGAA+TGG 0.647540 3_2:+87545243 Msa0434630:CDS
CATCCTGGCATTATCATGCG+AGG 0.650328 3_2:-87545665 None:intergenic
CCATGACCTCTTTGACACCA+CGG 0.651376 3_2:-87545238 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.659117 3_2:+87546062 Msa0434630:CDS
CCAACATCTTGACTTGCTGG+AGG 0.669581 3_2:-87545937 None:intergenic
TGAGGAGCTCAAGAGCAGAG+AGG 0.684333 3_2:-87544239 None:intergenic
CTTCATATAGGCCAACTCCA+CGG 0.687445 3_2:-87545632 None:intergenic
ATGATATCTCAAAGAAGACG+CGG 0.701193 3_2:+87546253 Msa0434630:CDS
GCTGTGGATGATCTTAGTCG+GGG 0.710260 3_2:+87546279 Msa0434630:CDS
GGTTGTTGTCAATAGAACCG+AGG 0.729846 3_2:+87545759 Msa0434630:CDS
GTCGCTCTATCCCAACACCG+TGG 0.769259 3_2:+87545221 Msa0434630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGTTTAATCAAACAA+AGG - chr3_2:87544339-87544358 None:intergenic 15.0%
!! TTTATACAATTAACTTTAAC+AGG + chr3_2:87544911-87544930 Msa0434630:intron 15.0%
!! TTATACAATTAACTTTAACA+GGG + chr3_2:87544912-87544931 Msa0434630:intron 15.0%
!! TAAAATGTTTAATCAAACAA+AGG - chr3_2:87544339-87544358 None:intergenic 15.0%
!! TTTATACAATTAACTTTAAC+AGG + chr3_2:87544911-87544930 Msa0434630:intron 15.0%
!! TTATACAATTAACTTTAACA+GGG + chr3_2:87544912-87544931 Msa0434630:intron 15.0%
!!! TCTGAAAGTATATAATCTTT+TGG + chr3_2:87544472-87544491 Msa0434630:intron 20.0%
!! TTTCATAGTATTCACTATAA+AGG + chr3_2:87544588-87544607 Msa0434630:intron 20.0%
!!! TCTGAAAGTATATAATCTTT+TGG + chr3_2:87544472-87544491 Msa0434630:intron 20.0%
!! TTTCATAGTATTCACTATAA+AGG + chr3_2:87544588-87544607 Msa0434630:intron 20.0%
! TTTCCCAAAAACTGATAAAT+GGG - chr3_2:87544139-87544158 None:intergenic 25.0%
! TGTTGTTATCTCTAAACATA+TGG + chr3_2:87544378-87544397 Msa0434630:intron 25.0%
! TCTCTAAACATATGGATTTA+AGG + chr3_2:87544386-87544405 Msa0434630:intron 25.0%
! CTTGAATACAATTAATCATC+TGG - chr3_2:87544515-87544534 None:intergenic 25.0%
! GAAAAAAAAAACATGTTTCC+TGG - chr3_2:87544572-87544591 None:intergenic 25.0%
!! GAGTTTGTTTAATTCACTTA+AGG + chr3_2:87544663-87544682 Msa0434630:intron 25.0%
!!! ATCCTTTTCTGTTTGTTATA+TGG + chr3_2:87544688-87544707 Msa0434630:intron 25.0%
! AACCATATAACAAACAGAAA+AGG - chr3_2:87544693-87544712 None:intergenic 25.0%
!!! TTTCTGTTTGTTATATGGTT+CGG + chr3_2:87544693-87544712 Msa0434630:intron 25.0%
! TTTACCAAAAGAAAGAAAGA+CGG + chr3_2:87544825-87544844 Msa0434630:intron 25.0%
! TTTAATGTATCTGTTCTCTT+TGG + chr3_2:87545326-87545345 Msa0434630:intron 25.0%
!! CTTTGTTGTAAAGTAAAAAC+CGG - chr3_2:87545390-87545409 None:intergenic 25.0%
!!! GCTCTCAATTTTTTTATAGT+AGG - chr3_2:87546177-87546196 None:intergenic 25.0%
! TTTCCCAAAAACTGATAAAT+GGG - chr3_2:87544139-87544158 None:intergenic 25.0%
! TGTTGTTATCTCTAAACATA+TGG + chr3_2:87544378-87544397 Msa0434630:intron 25.0%
! TCTCTAAACATATGGATTTA+AGG + chr3_2:87544386-87544405 Msa0434630:intron 25.0%
! CTTGAATACAATTAATCATC+TGG - chr3_2:87544515-87544534 None:intergenic 25.0%
! GAAAAAAAAAACATGTTTCC+TGG - chr3_2:87544572-87544591 None:intergenic 25.0%
!! GAGTTTGTTTAATTCACTTA+AGG + chr3_2:87544663-87544682 Msa0434630:intron 25.0%
!!! ATCCTTTTCTGTTTGTTATA+TGG + chr3_2:87544688-87544707 Msa0434630:intron 25.0%
! AACCATATAACAAACAGAAA+AGG - chr3_2:87544693-87544712 None:intergenic 25.0%
!!! TTTCTGTTTGTTATATGGTT+CGG + chr3_2:87544693-87544712 Msa0434630:intron 25.0%
! TTTACCAAAAGAAAGAAAGA+CGG + chr3_2:87544825-87544844 Msa0434630:intron 25.0%
! TTTAATGTATCTGTTCTCTT+TGG + chr3_2:87545326-87545345 Msa0434630:intron 25.0%
!! CTTTGTTGTAAAGTAAAAAC+CGG - chr3_2:87545390-87545409 None:intergenic 25.0%
!!! GCTCTCAATTTTTTTATAGT+AGG - chr3_2:87546177-87546196 None:intergenic 25.0%
GTTTCCCAAAAACTGATAAA+TGG - chr3_2:87544140-87544159 None:intergenic 30.0%
!!! AATTCCTTTTTGAGTGAAAG+TGG - chr3_2:87544169-87544188 None:intergenic 30.0%
CAGAATTCTGATCAAACTAA+TGG + chr3_2:87544204-87544223 Msa0434630:CDS 30.0%
TCAAAGACGAATTCAATTCA+GGG - chr3_2:87544302-87544321 None:intergenic 30.0%
ATCAAAGACGAATTCAATTC+AGG - chr3_2:87544303-87544322 None:intergenic 30.0%
ACAACAAATTAAGACAGAGA+GGG - chr3_2:87544364-87544383 None:intergenic 30.0%
AACAACAAATTAAGACAGAG+AGG - chr3_2:87544365-87544384 None:intergenic 30.0%
AACATGTTTCCTGGTAAATA+GGG - chr3_2:87544563-87544582 None:intergenic 30.0%
AAACATGTTTCCTGGTAAAT+AGG - chr3_2:87544564-87544583 None:intergenic 30.0%
!! TTCCAAAGATTTGAAGCTTT+TGG + chr3_2:87544756-87544775 Msa0434630:intron 30.0%
!! TCCAAAGATTTGAAGCTTTT+GGG + chr3_2:87544757-87544776 Msa0434630:intron 30.0%
TTACCAAAAGAAAGAAAGAC+GGG + chr3_2:87544826-87544845 Msa0434630:intron 30.0%
ATGCACGACAAATATGATTT+AGG - chr3_2:87545297-87545316 None:intergenic 30.0%
TACTTGAAAAAGATGTTGTG+TGG - chr3_2:87545416-87545435 None:intergenic 30.0%
! ATCAAACATTTGGTTTCGAA+AGG + chr3_2:87545724-87545743 Msa0434630:CDS 30.0%
CGTCATCTTTCATGAATAAT+GGG - chr3_2:87545906-87545925 None:intergenic 30.0%
ACGTCATCTTTCATGAATAA+TGG - chr3_2:87545907-87545926 None:intergenic 30.0%
! AGTTGAAACAATTTGAAGCT+TGG + chr3_2:87546130-87546149 Msa0434630:CDS 30.0%
AAACAGATATTTCAGTCTCT+AGG - chr3_2:87546419-87546438 None:intergenic 30.0%
! AGAGACTGAAATATCTGTTT+TGG + chr3_2:87546419-87546438 Msa0434630:CDS 30.0%
GTTTCCCAAAAACTGATAAA+TGG - chr3_2:87544140-87544159 None:intergenic 30.0%
!!! AATTCCTTTTTGAGTGAAAG+TGG - chr3_2:87544169-87544188 None:intergenic 30.0%
CAGAATTCTGATCAAACTAA+TGG + chr3_2:87544204-87544223 Msa0434630:CDS 30.0%
TCAAAGACGAATTCAATTCA+GGG - chr3_2:87544302-87544321 None:intergenic 30.0%
ATCAAAGACGAATTCAATTC+AGG - chr3_2:87544303-87544322 None:intergenic 30.0%
ACAACAAATTAAGACAGAGA+GGG - chr3_2:87544364-87544383 None:intergenic 30.0%
AACAACAAATTAAGACAGAG+AGG - chr3_2:87544365-87544384 None:intergenic 30.0%
AACATGTTTCCTGGTAAATA+GGG - chr3_2:87544563-87544582 None:intergenic 30.0%
AAACATGTTTCCTGGTAAAT+AGG - chr3_2:87544564-87544583 None:intergenic 30.0%
!! TTCCAAAGATTTGAAGCTTT+TGG + chr3_2:87544756-87544775 Msa0434630:intron 30.0%
!! TCCAAAGATTTGAAGCTTTT+GGG + chr3_2:87544757-87544776 Msa0434630:intron 30.0%
TTACCAAAAGAAAGAAAGAC+GGG + chr3_2:87544826-87544845 Msa0434630:intron 30.0%
ATGCACGACAAATATGATTT+AGG - chr3_2:87545297-87545316 None:intergenic 30.0%
TACTTGAAAAAGATGTTGTG+TGG - chr3_2:87545416-87545435 None:intergenic 30.0%
! ATCAAACATTTGGTTTCGAA+AGG + chr3_2:87545724-87545743 Msa0434630:CDS 30.0%
CGTCATCTTTCATGAATAAT+GGG - chr3_2:87545906-87545925 None:intergenic 30.0%
ACGTCATCTTTCATGAATAA+TGG - chr3_2:87545907-87545926 None:intergenic 30.0%
! AGTTGAAACAATTTGAAGCT+TGG + chr3_2:87546130-87546149 Msa0434630:CDS 30.0%
AAACAGATATTTCAGTCTCT+AGG - chr3_2:87546419-87546438 None:intergenic 30.0%
! AGAGACTGAAATATCTGTTT+TGG + chr3_2:87546419-87546438 Msa0434630:CDS 30.0%
AGGAATAGAGACTCCAATTT+GGG - chr3_2:87544084-87544103 None:intergenic 35.0%
CCAAAAACTGATAAATGGGT+GGG - chr3_2:87544135-87544154 None:intergenic 35.0%
! CCACCCATTTATCAGTTTTT+GGG + chr3_2:87544133-87544152 Msa0434630:CDS 35.0%
!! TTTTGAGTGAAAGTGGTTCT+GGG - chr3_2:87544162-87544181 None:intergenic 35.0%
!!! TTTTTGAGTGAAAGTGGTTC+TGG - chr3_2:87544163-87544182 None:intergenic 35.0%
AGAACCACTTTCACTCAAAA+AGG + chr3_2:87544162-87544181 Msa0434630:CDS 35.0%
TCCCAAAAGCTTCAAATCTT+TGG - chr3_2:87544761-87544780 None:intergenic 35.0%
! CTTTTGGTAAATAACCCTCT+AGG - chr3_2:87544816-87544835 None:intergenic 35.0%
! AATCCCGTCTTTCTTTCTTT+TGG - chr3_2:87544832-87544851 None:intergenic 35.0%
AACTTTAACAGGGTACACAA+AGG + chr3_2:87544922-87544941 Msa0434630:intron 35.0%
! AGTTTTTCACGCATTTCTAC+CGG - chr3_2:87545092-87545111 None:intergenic 35.0%
!!! CATCTTTTTCAAGTATCAGC+TGG + chr3_2:87545421-87545440 Msa0434630:CDS 35.0%
GTTAAGCAAGTTGTCAAAGT+TGG + chr3_2:87545487-87545506 Msa0434630:CDS 35.0%
AAAGTTGGACAAGGAGTTAA+CGG + chr3_2:87545502-87545521 Msa0434630:CDS 35.0%
TTCAAGCATGCAATAACTGT+CGG + chr3_2:87545550-87545569 Msa0434630:CDS 35.0%
ATGCAATAACTGTCGGAAAA+AGG + chr3_2:87545557-87545576 Msa0434630:CDS 35.0%
TGCAATAACTGTCGGAAAAA+GGG + chr3_2:87545558-87545577 Msa0434630:CDS 35.0%
AAAGCTGGTCATCAAACATT+TGG + chr3_2:87545714-87545733 Msa0434630:CDS 35.0%
GAACAGAAATGTCGATGAAA+AGG - chr3_2:87545972-87545991 None:intergenic 35.0%
ATTTCTGTTCCTCGAAATGT+TGG + chr3_2:87545982-87546001 Msa0434630:CDS 35.0%
!! CAATGTTGATGACCTTAAAG+AGG + chr3_2:87546041-87546060 Msa0434630:CDS 35.0%
ATGATATCTCAAAGAAGACG+CGG + chr3_2:87546253-87546272 Msa0434630:CDS 35.0%
ATTGTGAATAGGATGCTTCA+TGG + chr3_2:87546303-87546322 Msa0434630:CDS 35.0%
ATGGTCCAATGCAACATTTA+AGG + chr3_2:87546322-87546341 Msa0434630:CDS 35.0%
TCACACCTTAAATGTTGCAT+TGG - chr3_2:87546330-87546349 None:intergenic 35.0%
! ATGCAACATTTAAGGTGTGA+TGG + chr3_2:87546330-87546349 Msa0434630:CDS 35.0%
! TGCAACATTTAAGGTGTGAT+GGG + chr3_2:87546331-87546350 Msa0434630:CDS 35.0%
AGGAATAGAGACTCCAATTT+GGG - chr3_2:87544084-87544103 None:intergenic 35.0%
CCAAAAACTGATAAATGGGT+GGG - chr3_2:87544135-87544154 None:intergenic 35.0%
! CCACCCATTTATCAGTTTTT+GGG + chr3_2:87544133-87544152 Msa0434630:CDS 35.0%
!! TTTTGAGTGAAAGTGGTTCT+GGG - chr3_2:87544162-87544181 None:intergenic 35.0%
!!! TTTTTGAGTGAAAGTGGTTC+TGG - chr3_2:87544163-87544182 None:intergenic 35.0%
AGAACCACTTTCACTCAAAA+AGG + chr3_2:87544162-87544181 Msa0434630:CDS 35.0%
TCCCAAAAGCTTCAAATCTT+TGG - chr3_2:87544761-87544780 None:intergenic 35.0%
! CTTTTGGTAAATAACCCTCT+AGG - chr3_2:87544816-87544835 None:intergenic 35.0%
! AATCCCGTCTTTCTTTCTTT+TGG - chr3_2:87544832-87544851 None:intergenic 35.0%
AACTTTAACAGGGTACACAA+AGG + chr3_2:87544922-87544941 Msa0434630:intron 35.0%
! AGTTTTTCACGCATTTCTAC+CGG - chr3_2:87545092-87545111 None:intergenic 35.0%
!!! CATCTTTTTCAAGTATCAGC+TGG + chr3_2:87545421-87545440 Msa0434630:CDS 35.0%
GTTAAGCAAGTTGTCAAAGT+TGG + chr3_2:87545487-87545506 Msa0434630:CDS 35.0%
AAAGTTGGACAAGGAGTTAA+CGG + chr3_2:87545502-87545521 Msa0434630:CDS 35.0%
TTCAAGCATGCAATAACTGT+CGG + chr3_2:87545550-87545569 Msa0434630:CDS 35.0%
ATGCAATAACTGTCGGAAAA+AGG + chr3_2:87545557-87545576 Msa0434630:CDS 35.0%
TGCAATAACTGTCGGAAAAA+GGG + chr3_2:87545558-87545577 Msa0434630:CDS 35.0%
AAAGCTGGTCATCAAACATT+TGG + chr3_2:87545714-87545733 Msa0434630:CDS 35.0%
GAACAGAAATGTCGATGAAA+AGG - chr3_2:87545972-87545991 None:intergenic 35.0%
ATTTCTGTTCCTCGAAATGT+TGG + chr3_2:87545982-87546001 Msa0434630:CDS 35.0%
!! CAATGTTGATGACCTTAAAG+AGG + chr3_2:87546041-87546060 Msa0434630:CDS 35.0%
ATGATATCTCAAAGAAGACG+CGG + chr3_2:87546253-87546272 Msa0434630:CDS 35.0%
ATTGTGAATAGGATGCTTCA+TGG + chr3_2:87546303-87546322 Msa0434630:CDS 35.0%
ATGGTCCAATGCAACATTTA+AGG + chr3_2:87546322-87546341 Msa0434630:CDS 35.0%
TCACACCTTAAATGTTGCAT+TGG - chr3_2:87546330-87546349 None:intergenic 35.0%
! ATGCAACATTTAAGGTGTGA+TGG + chr3_2:87546330-87546349 Msa0434630:CDS 35.0%
! TGCAACATTTAAGGTGTGAT+GGG + chr3_2:87546331-87546350 Msa0434630:CDS 35.0%
GAGGAATAGAGACTCCAATT+TGG - chr3_2:87544085-87544104 None:intergenic 40.0%
TCCTCAAATCTTCTTCTTCG+AGG + chr3_2:87544100-87544119 Msa0434630:CDS 40.0%
AACTGATAAATGGGTGGGAA+TGG - chr3_2:87544130-87544149 None:intergenic 40.0%
! CCCACCCATTTATCAGTTTT+TGG + chr3_2:87544132-87544151 Msa0434630:CDS 40.0%
CCCAAAAACTGATAAATGGG+TGG - chr3_2:87544136-87544155 None:intergenic 40.0%
! TATCAGCTGCAGAAGTTTTG+AGG - chr3_2:87544260-87544279 None:intergenic 40.0%
! CGGGATTGCATGTTTTTCAT+TGG + chr3_2:87544845-87544864 Msa0434630:intron 40.0%
TAACAGGGTACACAAAGGAA+AGG + chr3_2:87544927-87544946 Msa0434630:intron 40.0%
ATATATCTCCATTCGGTTGC+AGG - chr3_2:87545198-87545217 None:intergenic 40.0%
CGACGACATATATCTCCATT+CGG - chr3_2:87545205-87545224 None:intergenic 40.0%
! TGGTCTTGAGTCTCTTGTAT+TGG + chr3_2:87545441-87545460 Msa0434630:CDS 40.0%
GGTCTTGAGTCTCTTGTATT+GGG + chr3_2:87545442-87545461 Msa0434630:CDS 40.0%
AGAAGGTCAAATTCTTGCAC+AGG + chr3_2:87545465-87545484 Msa0434630:CDS 40.0%
CAAGTTGTCAAAGTTGGACA+AGG + chr3_2:87545493-87545512 Msa0434630:CDS 40.0%
!! GGCTTTGGAAGAAACATTAG+TGG + chr3_2:87545523-87545542 Msa0434630:CDS 40.0%
CAGAGACTAATATTGCTGCT+GGG + chr3_2:87545587-87545606 Msa0434630:CDS 40.0%
AGAGACTAATATTGCTGCTG+GGG + chr3_2:87545588-87545607 Msa0434630:CDS 40.0%
! AATGCCAGGATGCTGATTAT+CGG + chr3_2:87545676-87545695 Msa0434630:CDS 40.0%
!! CAAGAGAGCATTTCTGAAAG+AGG - chr3_2:87545838-87545857 None:intergenic 40.0%
!! TTGTGTTTCTGAAGCAGATG+TGG + chr3_2:87545855-87545874 Msa0434630:CDS 40.0%
AAATGTCGATGAAAAGGCGA+AGG - chr3_2:87545966-87545985 None:intergenic 40.0%
ACACATGAACCAACATTTCG+AGG - chr3_2:87545994-87546013 None:intergenic 40.0%
TGATGACCTTAAAGAGGTTG+TGG + chr3_2:87546047-87546066 Msa0434630:CDS 40.0%
AATTGAGAGCCTATGCTGAA+AGG + chr3_2:87546187-87546206 Msa0434630:CDS 40.0%
TGAGAAATGCTTGGGTAAGA+TGG + chr3_2:87546227-87546246 Msa0434630:CDS 40.0%
GAGAAATGCTTGGGTAAGAT+GGG + chr3_2:87546228-87546247 Msa0434630:CDS 40.0%
AAGCTGTGGATGATCTTAGT+CGG + chr3_2:87546277-87546296 Msa0434630:CDS 40.0%
!! TTAGTCGGGGTATTGTGAAT+AGG + chr3_2:87546292-87546311 Msa0434630:CDS 40.0%
CAAAGCATGCATGTTCTCAA+GGG - chr3_2:87546382-87546401 None:intergenic 40.0%
TCAAAGCATGCATGTTCTCA+AGG - chr3_2:87546383-87546402 None:intergenic 40.0%
GAGGAATAGAGACTCCAATT+TGG - chr3_2:87544085-87544104 None:intergenic 40.0%
TCCTCAAATCTTCTTCTTCG+AGG + chr3_2:87544100-87544119 Msa0434630:CDS 40.0%
AACTGATAAATGGGTGGGAA+TGG - chr3_2:87544130-87544149 None:intergenic 40.0%
! CCCACCCATTTATCAGTTTT+TGG + chr3_2:87544132-87544151 Msa0434630:CDS 40.0%
CCCAAAAACTGATAAATGGG+TGG - chr3_2:87544136-87544155 None:intergenic 40.0%
! TATCAGCTGCAGAAGTTTTG+AGG - chr3_2:87544260-87544279 None:intergenic 40.0%
! CGGGATTGCATGTTTTTCAT+TGG + chr3_2:87544845-87544864 Msa0434630:intron 40.0%
TAACAGGGTACACAAAGGAA+AGG + chr3_2:87544927-87544946 Msa0434630:intron 40.0%
ATATATCTCCATTCGGTTGC+AGG - chr3_2:87545198-87545217 None:intergenic 40.0%
CGACGACATATATCTCCATT+CGG - chr3_2:87545205-87545224 None:intergenic 40.0%
! TGGTCTTGAGTCTCTTGTAT+TGG + chr3_2:87545441-87545460 Msa0434630:CDS 40.0%
GGTCTTGAGTCTCTTGTATT+GGG + chr3_2:87545442-87545461 Msa0434630:CDS 40.0%
AGAAGGTCAAATTCTTGCAC+AGG + chr3_2:87545465-87545484 Msa0434630:CDS 40.0%
CAAGTTGTCAAAGTTGGACA+AGG + chr3_2:87545493-87545512 Msa0434630:CDS 40.0%
!! GGCTTTGGAAGAAACATTAG+TGG + chr3_2:87545523-87545542 Msa0434630:CDS 40.0%
CAGAGACTAATATTGCTGCT+GGG + chr3_2:87545587-87545606 Msa0434630:CDS 40.0%
AGAGACTAATATTGCTGCTG+GGG + chr3_2:87545588-87545607 Msa0434630:CDS 40.0%
! AATGCCAGGATGCTGATTAT+CGG + chr3_2:87545676-87545695 Msa0434630:CDS 40.0%
!! CAAGAGAGCATTTCTGAAAG+AGG - chr3_2:87545838-87545857 None:intergenic 40.0%
!! TTGTGTTTCTGAAGCAGATG+TGG + chr3_2:87545855-87545874 Msa0434630:CDS 40.0%
AAATGTCGATGAAAAGGCGA+AGG - chr3_2:87545966-87545985 None:intergenic 40.0%
ACACATGAACCAACATTTCG+AGG - chr3_2:87545994-87546013 None:intergenic 40.0%
TGATGACCTTAAAGAGGTTG+TGG + chr3_2:87546047-87546066 Msa0434630:CDS 40.0%
AATTGAGAGCCTATGCTGAA+AGG + chr3_2:87546187-87546206 Msa0434630:CDS 40.0%
TGAGAAATGCTTGGGTAAGA+TGG + chr3_2:87546227-87546246 Msa0434630:CDS 40.0%
GAGAAATGCTTGGGTAAGAT+GGG + chr3_2:87546228-87546247 Msa0434630:CDS 40.0%
AAGCTGTGGATGATCTTAGT+CGG + chr3_2:87546277-87546296 Msa0434630:CDS 40.0%
!! TTAGTCGGGGTATTGTGAAT+AGG + chr3_2:87546292-87546311 Msa0434630:CDS 40.0%
CAAAGCATGCATGTTCTCAA+GGG - chr3_2:87546382-87546401 None:intergenic 40.0%
TCAAAGCATGCATGTTCTCA+AGG - chr3_2:87546383-87546402 None:intergenic 40.0%
ACCGGAGAAAGTGGTTGAAA+CGG - chr3_2:87544061-87544080 None:intergenic 45.0%
! TAGAGACTCCAATTTGGGAC+CGG - chr3_2:87544079-87544098 None:intergenic 45.0%
GCCTCGAAGAAGAAGATTTG+AGG - chr3_2:87544104-87544123 None:intergenic 45.0%
CAGAGATAAAGTGCAGTAGC+AGG - chr3_2:87544456-87544475 None:intergenic 45.0%
ATTGCAGCACCCTATTTACC+AGG + chr3_2:87544551-87544570 Msa0434630:intron 45.0%
!!! TTTGAAGCTTTTGGGACCTG+TGG + chr3_2:87544765-87544784 Msa0434630:intron 45.0%
! TGGTGATATCTAGAGCCTAG+AGG + chr3_2:87544798-87544817 Msa0434630:intron 45.0%
! GGTGATATCTAGAGCCTAGA+GGG + chr3_2:87544799-87544818 Msa0434630:intron 45.0%
GCGTGAAAAACTTGCCATTC+CGG + chr3_2:87545100-87545119 Msa0434630:CDS 45.0%
CACAACTCTGCAATAGCTCT+AGG - chr3_2:87545137-87545156 None:intergenic 45.0%
GTGTCAAAGAGGTCATGGAA+TGG + chr3_2:87545243-87545262 Msa0434630:CDS 45.0%
!! GCAAAGCTCTGAAACAGGAA+CGG - chr3_2:87545362-87545381 None:intergenic 45.0%
GAGTCTCTTGTATTGGGAGA+AGG + chr3_2:87545448-87545467 Msa0434630:CDS 45.0%
GCAGAGACTAATATTGCTGC+TGG + chr3_2:87545586-87545605 Msa0434630:CDS 45.0%
CTTCATATAGGCCAACTCCA+CGG - chr3_2:87545635-87545654 None:intergenic 45.0%
GGCTTCAGGTAGCTTCATAT+AGG - chr3_2:87545647-87545666 None:intergenic 45.0%
!! ATTATCGGTGCTGGGAAGAT+GGG + chr3_2:87545691-87545710 Msa0434630:CDS 45.0%
TGGTTTCGAAAGGTTGCACA+AGG + chr3_2:87545734-87545753 Msa0434630:CDS 45.0%
TTCGAAAGGTTGCACAAGGA+TGG + chr3_2:87545738-87545757 Msa0434630:CDS 45.0%
GGTTGTTGTCAATAGAACCG+AGG + chr3_2:87545759-87545778 Msa0434630:CDS 45.0%
TATTGCAGCAACTCTCTCCT+CGG - chr3_2:87545779-87545798 None:intergenic 45.0%
TGCAATACGCGAAGAACTGA+AGG + chr3_2:87545792-87545811 Msa0434630:CDS 45.0%
! TGGGTTTTCTGATGCTGTAC+TGG - chr3_2:87545887-87545906 None:intergenic 45.0%
TCTAAGCCGATCCTCTTTGT+TGG - chr3_2:87546076-87546095 None:intergenic 45.0%
! GGATCGGCTTAGAAAAGCAA+TGG + chr3_2:87546083-87546102 Msa0434630:CDS 45.0%
! TAGAAAAGCAATGGAAGCGC+AGG + chr3_2:87546092-87546111 Msa0434630:CDS 45.0%
AGCCTATGCTGAAAGGATCA+GGG + chr3_2:87546194-87546213 Msa0434630:CDS 45.0%
AACCCTGATCCTTTCAGCAT+AGG - chr3_2:87546199-87546218 None:intergenic 45.0%
TGCTGAGCTTGAGAAATGCT+TGG + chr3_2:87546218-87546237 Msa0434630:CDS 45.0%
GCTGAGCTTGAGAAATGCTT+GGG + chr3_2:87546219-87546238 Msa0434630:CDS 45.0%
AGCTGTGGATGATCTTAGTC+GGG + chr3_2:87546278-87546297 Msa0434630:CDS 45.0%
GTTCTCAAGGGTCTCAGTTA+GGG - chr3_2:87546370-87546389 None:intergenic 45.0%
TGTTCTCAAGGGTCTCAGTT+AGG - chr3_2:87546371-87546390 None:intergenic 45.0%
ACCGGAGAAAGTGGTTGAAA+CGG - chr3_2:87544061-87544080 None:intergenic 45.0%
! TAGAGACTCCAATTTGGGAC+CGG - chr3_2:87544079-87544098 None:intergenic 45.0%
GCCTCGAAGAAGAAGATTTG+AGG - chr3_2:87544104-87544123 None:intergenic 45.0%
CAGAGATAAAGTGCAGTAGC+AGG - chr3_2:87544456-87544475 None:intergenic 45.0%
ATTGCAGCACCCTATTTACC+AGG + chr3_2:87544551-87544570 Msa0434630:intron 45.0%
!!! TTTGAAGCTTTTGGGACCTG+TGG + chr3_2:87544765-87544784 Msa0434630:intron 45.0%
! TGGTGATATCTAGAGCCTAG+AGG + chr3_2:87544798-87544817 Msa0434630:intron 45.0%
! GGTGATATCTAGAGCCTAGA+GGG + chr3_2:87544799-87544818 Msa0434630:intron 45.0%
GCGTGAAAAACTTGCCATTC+CGG + chr3_2:87545100-87545119 Msa0434630:CDS 45.0%
CACAACTCTGCAATAGCTCT+AGG - chr3_2:87545137-87545156 None:intergenic 45.0%
GTGTCAAAGAGGTCATGGAA+TGG + chr3_2:87545243-87545262 Msa0434630:CDS 45.0%
!! GCAAAGCTCTGAAACAGGAA+CGG - chr3_2:87545362-87545381 None:intergenic 45.0%
GAGTCTCTTGTATTGGGAGA+AGG + chr3_2:87545448-87545467 Msa0434630:CDS 45.0%
GCAGAGACTAATATTGCTGC+TGG + chr3_2:87545586-87545605 Msa0434630:CDS 45.0%
CTTCATATAGGCCAACTCCA+CGG - chr3_2:87545635-87545654 None:intergenic 45.0%
GGCTTCAGGTAGCTTCATAT+AGG - chr3_2:87545647-87545666 None:intergenic 45.0%
!! ATTATCGGTGCTGGGAAGAT+GGG + chr3_2:87545691-87545710 Msa0434630:CDS 45.0%
TGGTTTCGAAAGGTTGCACA+AGG + chr3_2:87545734-87545753 Msa0434630:CDS 45.0%
TTCGAAAGGTTGCACAAGGA+TGG + chr3_2:87545738-87545757 Msa0434630:CDS 45.0%
GGTTGTTGTCAATAGAACCG+AGG + chr3_2:87545759-87545778 Msa0434630:CDS 45.0%
TATTGCAGCAACTCTCTCCT+CGG - chr3_2:87545779-87545798 None:intergenic 45.0%
TGCAATACGCGAAGAACTGA+AGG + chr3_2:87545792-87545811 Msa0434630:CDS 45.0%
! TGGGTTTTCTGATGCTGTAC+TGG - chr3_2:87545887-87545906 None:intergenic 45.0%
TCTAAGCCGATCCTCTTTGT+TGG - chr3_2:87546076-87546095 None:intergenic 45.0%
! GGATCGGCTTAGAAAAGCAA+TGG + chr3_2:87546083-87546102 Msa0434630:CDS 45.0%
! TAGAAAAGCAATGGAAGCGC+AGG + chr3_2:87546092-87546111 Msa0434630:CDS 45.0%
AGCCTATGCTGAAAGGATCA+GGG + chr3_2:87546194-87546213 Msa0434630:CDS 45.0%
AACCCTGATCCTTTCAGCAT+AGG - chr3_2:87546199-87546218 None:intergenic 45.0%
TGCTGAGCTTGAGAAATGCT+TGG + chr3_2:87546218-87546237 Msa0434630:CDS 45.0%
GCTGAGCTTGAGAAATGCTT+GGG + chr3_2:87546219-87546238 Msa0434630:CDS 45.0%
AGCTGTGGATGATCTTAGTC+GGG + chr3_2:87546278-87546297 Msa0434630:CDS 45.0%
GTTCTCAAGGGTCTCAGTTA+GGG - chr3_2:87546370-87546389 None:intergenic 45.0%
TGTTCTCAAGGGTCTCAGTT+AGG - chr3_2:87546371-87546390 None:intergenic 45.0%
GCCGTTTCAACCACTTTCTC+CGG + chr3_2:87544057-87544076 Msa0434630:CDS 50.0%
! CAATTTGGGACCGGAGAAAG+TGG - chr3_2:87544070-87544089 None:intergenic 50.0%
CACTTTCTCCGGTCCCAAAT+TGG + chr3_2:87544068-87544087 Msa0434630:CDS 50.0%
!!! CTTTTGGGACCTGTGGTTGA+CGG + chr3_2:87544772-87544791 Msa0434630:intron 50.0%
TTGCCATTCCGGAAGCAGAA+TGG + chr3_2:87545111-87545130 Msa0434630:CDS 50.0%
CTCTTTGACACCACGGTGTT+GGG - chr3_2:87545234-87545253 None:intergenic 50.0%
CCATGACCTCTTTGACACCA+CGG - chr3_2:87545241-87545260 None:intergenic 50.0%
!! TGCTCGCAAAGCTCTGAAAC+AGG - chr3_2:87545367-87545386 None:intergenic 50.0%
TTTCAGAGCTTTGCGAGCAC+CGG + chr3_2:87545368-87545387 Msa0434630:CDS 50.0%
GGACAAGGAGTTAACGGCTT+TGG + chr3_2:87545508-87545527 Msa0434630:CDS 50.0%
GCATTATCATGCGAGGCTTC+AGG - chr3_2:87545661-87545680 None:intergenic 50.0%
! AAGCCTCGCATGATAATGCC+AGG + chr3_2:87545662-87545681 Msa0434630:CDS 50.0%
CATCCTGGCATTATCATGCG+AGG - chr3_2:87545668-87545687 None:intergenic 50.0%
!! AGCACCGATAATCAGCATCC+TGG - chr3_2:87545683-87545702 None:intergenic 50.0%
! AGGATGCTGATTATCGGTGC+TGG + chr3_2:87545682-87545701 Msa0434630:CDS 50.0%
! GGATGCTGATTATCGGTGCT+GGG + chr3_2:87545683-87545702 Msa0434630:CDS 50.0%
!! GATTATCGGTGCTGGGAAGA+TGG + chr3_2:87545690-87545709 Msa0434630:CDS 50.0%
!! CATCTTGACTTGCTGGAGGA+AGG - chr3_2:87545936-87545955 None:intergenic 50.0%
!! CCAACATCTTGACTTGCTGG+AGG - chr3_2:87545940-87545959 None:intergenic 50.0%
CCTCCAGCAAGTCAAGATGT+TGG + chr3_2:87545937-87545956 Msa0434630:CDS 50.0%
!! CCTCCAACATCTTGACTTGC+TGG - chr3_2:87545943-87545962 None:intergenic 50.0%
CCAGCAAGTCAAGATGTTGG+AGG + chr3_2:87545940-87545959 Msa0434630:CDS 50.0%
TGGCAGCCACAACCTCTTTA+AGG - chr3_2:87546056-87546075 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+CGG + chr3_2:87546067-87546086 Msa0434630:CDS 50.0%
GAGCCTATGCTGAAAGGATC+AGG + chr3_2:87546193-87546212 Msa0434630:CDS 50.0%
AAAGAAGACGCGGAAAGCTG+TGG + chr3_2:87546263-87546282 Msa0434630:CDS 50.0%
GCTGTGGATGATCTTAGTCG+GGG + chr3_2:87546279-87546298 Msa0434630:CDS 50.0%
CAAGGGTCTCAGTTAGGGTT+CGG - chr3_2:87546365-87546384 None:intergenic 50.0%
GGAGCAGAAAGTTCGAGCTA+AGG + chr3_2:87546440-87546459 Msa0434630:CDS 50.0%
GCAGAAAGTTCGAGCTAAGG+TGG + chr3_2:87546443-87546462 Msa0434630:CDS 50.0%
GCCGTTTCAACCACTTTCTC+CGG + chr3_2:87544057-87544076 Msa0434630:CDS 50.0%
! CAATTTGGGACCGGAGAAAG+TGG - chr3_2:87544070-87544089 None:intergenic 50.0%
CACTTTCTCCGGTCCCAAAT+TGG + chr3_2:87544068-87544087 Msa0434630:CDS 50.0%
!!! CTTTTGGGACCTGTGGTTGA+CGG + chr3_2:87544772-87544791 Msa0434630:intron 50.0%
TTGCCATTCCGGAAGCAGAA+TGG + chr3_2:87545111-87545130 Msa0434630:CDS 50.0%
CTCTTTGACACCACGGTGTT+GGG - chr3_2:87545234-87545253 None:intergenic 50.0%
CCATGACCTCTTTGACACCA+CGG - chr3_2:87545241-87545260 None:intergenic 50.0%
!! TGCTCGCAAAGCTCTGAAAC+AGG - chr3_2:87545367-87545386 None:intergenic 50.0%
TTTCAGAGCTTTGCGAGCAC+CGG + chr3_2:87545368-87545387 Msa0434630:CDS 50.0%
GGACAAGGAGTTAACGGCTT+TGG + chr3_2:87545508-87545527 Msa0434630:CDS 50.0%
GCATTATCATGCGAGGCTTC+AGG - chr3_2:87545661-87545680 None:intergenic 50.0%
! AAGCCTCGCATGATAATGCC+AGG + chr3_2:87545662-87545681 Msa0434630:CDS 50.0%
CATCCTGGCATTATCATGCG+AGG - chr3_2:87545668-87545687 None:intergenic 50.0%
!! AGCACCGATAATCAGCATCC+TGG - chr3_2:87545683-87545702 None:intergenic 50.0%
! AGGATGCTGATTATCGGTGC+TGG + chr3_2:87545682-87545701 Msa0434630:CDS 50.0%
! GGATGCTGATTATCGGTGCT+GGG + chr3_2:87545683-87545702 Msa0434630:CDS 50.0%
!! GATTATCGGTGCTGGGAAGA+TGG + chr3_2:87545690-87545709 Msa0434630:CDS 50.0%
!! CATCTTGACTTGCTGGAGGA+AGG - chr3_2:87545936-87545955 None:intergenic 50.0%
!! CCAACATCTTGACTTGCTGG+AGG - chr3_2:87545940-87545959 None:intergenic 50.0%
CCTCCAGCAAGTCAAGATGT+TGG + chr3_2:87545937-87545956 Msa0434630:CDS 50.0%
!! CCTCCAACATCTTGACTTGC+TGG - chr3_2:87545943-87545962 None:intergenic 50.0%
CCAGCAAGTCAAGATGTTGG+AGG + chr3_2:87545940-87545959 Msa0434630:CDS 50.0%
TGGCAGCCACAACCTCTTTA+AGG - chr3_2:87546056-87546075 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+CGG + chr3_2:87546067-87546086 Msa0434630:CDS 50.0%
GAGCCTATGCTGAAAGGATC+AGG + chr3_2:87546193-87546212 Msa0434630:CDS 50.0%
AAAGAAGACGCGGAAAGCTG+TGG + chr3_2:87546263-87546282 Msa0434630:CDS 50.0%
GCTGTGGATGATCTTAGTCG+GGG + chr3_2:87546279-87546298 Msa0434630:CDS 50.0%
CAAGGGTCTCAGTTAGGGTT+CGG - chr3_2:87546365-87546384 None:intergenic 50.0%
GGAGCAGAAAGTTCGAGCTA+AGG + chr3_2:87546440-87546459 Msa0434630:CDS 50.0%
GCAGAAAGTTCGAGCTAAGG+TGG + chr3_2:87546443-87546462 Msa0434630:CDS 50.0%
GAGGAGCTCAAGAGCAGAGA+GGG - chr3_2:87544241-87544260 None:intergenic 55.0%
TGAGGAGCTCAAGAGCAGAG+AGG - chr3_2:87544242-87544261 None:intergenic 55.0%
TCACCACAACCGTCAACCAC+AGG - chr3_2:87544784-87544803 None:intergenic 55.0%
AGGCCATTCTGCTTCCGGAA+TGG - chr3_2:87545117-87545136 None:intergenic 55.0%
! GCTCTAGGCCATTCTGCTTC+CGG - chr3_2:87545122-87545141 None:intergenic 55.0%
TCTGAGCACCTGCAACCGAA+TGG + chr3_2:87545187-87545206 Msa0434630:CDS 55.0%
CCTCTTTGACACCACGGTGT+TGG - chr3_2:87545235-87545254 None:intergenic 55.0%
! CCAACACCGTGGTGTCAAAG+AGG + chr3_2:87545232-87545251 Msa0434630:CDS 55.0%
! CCGTGGTGTCAAAGAGGTCA+TGG + chr3_2:87545238-87545257 Msa0434630:CDS 55.0%
TTCTGTGAGTTCAGCTGCCG+TGG + chr3_2:87545615-87545634 Msa0434630:CDS 55.0%
TGCTGGGAAGATGGGAAAGC+TGG + chr3_2:87545699-87545718 Msa0434630:CDS 55.0%
GGTTGTGGCTGCCAACAAAG+AGG + chr3_2:87546062-87546081 Msa0434630:CDS 55.0%
! ATGGAAGCGCAGGCGATCAT+TGG + chr3_2:87546102-87546121 Msa0434630:CDS 55.0%
TGAAGCTTGGAGAGACTCGC+TGG + chr3_2:87546143-87546162 Msa0434630:CDS 55.0%
GAGGAGCTCAAGAGCAGAGA+GGG - chr3_2:87544241-87544260 None:intergenic 55.0%
TGAGGAGCTCAAGAGCAGAG+AGG - chr3_2:87544242-87544261 None:intergenic 55.0%
TCACCACAACCGTCAACCAC+AGG - chr3_2:87544784-87544803 None:intergenic 55.0%
AGGCCATTCTGCTTCCGGAA+TGG - chr3_2:87545117-87545136 None:intergenic 55.0%
! GCTCTAGGCCATTCTGCTTC+CGG - chr3_2:87545122-87545141 None:intergenic 55.0%
TCTGAGCACCTGCAACCGAA+TGG + chr3_2:87545187-87545206 Msa0434630:CDS 55.0%
CCTCTTTGACACCACGGTGT+TGG - chr3_2:87545235-87545254 None:intergenic 55.0%
! CCAACACCGTGGTGTCAAAG+AGG + chr3_2:87545232-87545251 Msa0434630:CDS 55.0%
! CCGTGGTGTCAAAGAGGTCA+TGG + chr3_2:87545238-87545257 Msa0434630:CDS 55.0%
TTCTGTGAGTTCAGCTGCCG+TGG + chr3_2:87545615-87545634 Msa0434630:CDS 55.0%
TGCTGGGAAGATGGGAAAGC+TGG + chr3_2:87545699-87545718 Msa0434630:CDS 55.0%
GGTTGTGGCTGCCAACAAAG+AGG + chr3_2:87546062-87546081 Msa0434630:CDS 55.0%
! ATGGAAGCGCAGGCGATCAT+TGG + chr3_2:87546102-87546121 Msa0434630:CDS 55.0%
TGAAGCTTGGAGAGACTCGC+TGG + chr3_2:87546143-87546162 Msa0434630:CDS 55.0%
CTCAAGAGCAGAGAGGGTGG+TGG - chr3_2:87544235-87544254 None:intergenic 60.0%
GAGCTCAAGAGCAGAGAGGG+TGG - chr3_2:87544238-87544257 None:intergenic 60.0%
GGACCTGTGGTTGACGGTTG+TGG + chr3_2:87544778-87544797 Msa0434630:intron 60.0%
GCTCAGTGTGCACACTGCTC+CGG + chr3_2:87545070-87545089 Msa0434630:intron 60.0%
GTCGCTCTATCCCAACACCG+TGG + chr3_2:87545221-87545240 Msa0434630:CDS 60.0%
GAGTTCAGCTGCCGTGGAGT+TGG + chr3_2:87545621-87545640 Msa0434630:CDS 60.0%
CTCAAGAGCAGAGAGGGTGG+TGG - chr3_2:87544235-87544254 None:intergenic 60.0%
GAGCTCAAGAGCAGAGAGGG+TGG - chr3_2:87544238-87544257 None:intergenic 60.0%
GGACCTGTGGTTGACGGTTG+TGG + chr3_2:87544778-87544797 Msa0434630:intron 60.0%
GCTCAGTGTGCACACTGCTC+CGG + chr3_2:87545070-87545089 Msa0434630:intron 60.0%
GTCGCTCTATCCCAACACCG+TGG + chr3_2:87545221-87545240 Msa0434630:CDS 60.0%
GAGTTCAGCTGCCGTGGAGT+TGG + chr3_2:87545621-87545640 Msa0434630:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87544054 87546482 87544054 ID=Msa0434630;Name=Msa0434630
chr3_2 mRNA 87544054 87546482 87544054 ID=Msa0434630-mRNA-1;Parent=Msa0434630;Name=Msa0434630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|511
chr3_2 exon 87544054 87544279 87544054 ID=Msa0434630-mRNA-1:exon:25514;Parent=Msa0434630-mRNA-1
chr3_2 exon 87545096 87545274 87545096 ID=Msa0434630-mRNA-1:exon:25515;Parent=Msa0434630-mRNA-1
chr3_2 exon 87545352 87546482 87545352 ID=Msa0434630-mRNA-1:exon:25516;Parent=Msa0434630-mRNA-1
chr3_2 CDS 87544054 87544279 87544054 ID=Msa0434630-mRNA-1:cds;Parent=Msa0434630-mRNA-1
chr3_2 CDS 87545096 87545274 87545096 ID=Msa0434630-mRNA-1:cds;Parent=Msa0434630-mRNA-1
chr3_2 CDS 87545352 87546482 87545352 ID=Msa0434630-mRNA-1:cds;Parent=Msa0434630-mRNA-1
Gene Sequence

>Msa0434630

ATGGCCGTTTCAACCACTTTCTCCGGTCCCAAATTGGAGTCTCTATTCCTCAAATCTTCTTCTTCGAGGCTATCCATTCCCACCCATTTATCAGTTTTTGGGAAACCCAGAACCACTTTCACTCAAAAAGGAATTATTCGATGTGATGCTCAGAATTCTGATCAAACTAATGGTAGCACCACCACCCTCTCTGCTCTTGAGCTCCTCAAAACTTCTGCAGCTGATAAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAATGGCCTAGAGCTATTGCAGAGTTGTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTCGTCGCTCTATCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAACAAGTTCCGTTCCTGTTTCAGAGCTTTGCGAGCACCGGTTTTTACTTTACAACAAAGATGCCACACAACATCTTTTTCAAGTATCAGCTGGTCTTGAGTCTCTTGTATTGGGAGAAGGTCAAATTCTTGCACAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAACGGCTTTGGAAGAAACATTAGTGGTCTATTCAAGCATGCAATAACTGTCGGAAAAAGGGTTAGAGCAGAGACTAATATTGCTGCTGGGGCAGTTTCTGTGAGTTCAGCTGCCGTGGAGTTGGCCTATATGAAGCTACCTGAAGCCTCGCATGATAATGCCAGGATGCTGATTATCGGTGCTGGGAAGATGGGAAAGCTGGTCATCAAACATTTGGTTTCGAAAGGTTGCACAAGGATGGTTGTTGTCAATAGAACCGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCTTGTGTTTCTGAAGCAGATGTGGTATTCACCAGTACAGCATCAGAAAACCCATTATTCATGAAAGATGACGTCAAAGACCTTCCTCCAGCAAGTCAAGATGTTGGAGGCCTTCGCCTTTTCATCGACATTTCTGTTCCTCGAAATGTTGGTTCATGTGTCTCAGATATTGAATCTGTTCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGGCTTAGAAAAGCAATGGAAGCGCAGGCGATCATTGGTGAAGAGTTGAAACAATTTGAAGCTTGGAGAGACTCGCTGGAAACTGTTCCTACTATAAAAAAATTGAGAGCCTATGCTGAAAGGATCAGGGTTGCTGAGCTTGAGAAATGCTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACGCGGAAAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAGGATGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAGTGACGACCGAACCCTAACTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTAGAGACTGAAATATCTGTTTTGGAGCAGAAAGTTCGAGCTAAGGTGGAACAAAACCAGAAGTGA

Protein sequence

>Msa0434630

MAVSTTFSGPKLESLFLKSSSSRLSIPTHLSVFGKPRTTFTQKGIIRCDAQNSDQTNGSTTTLSALELLKTSAADKMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCEHRFLLYNKDATQHLFQVSAGLESLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPEASHDNARMLIIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCVSEADVVFTSTASENPLFMKDDVKDLPPASQDVGGLRLFIDISVPRNVGSCVSDIESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEELKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLGKMGDDISKKTRKAVDDLSRGIVNRMLHGPMQHLRCDGSDDRTLTETLENMHALNRMFSLETEISVLEQKVRAKVEQNQK*