AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0830410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830410 MtrunA17_Chr5g0396481 94.118 102 6 0 7 108 1 102 4.80e-63 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0830410 AT1G08520.1 49.275 69 34 1 40 108 43 110 2.07e-11 60.1

Find 89 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTCTTGCTGCTGTTAT+TGG 0.145624 5_4:-3481933 Msa0830410:CDS
TGGAATTGCGACAGAATTTC+AGG 0.241802 5_4:-3479414 Msa0830410:three_prime_UTR
CTCCTTCAGTCAATACATTA+AGG 0.244704 5_4:+3480212 None:intergenic
TGTTGATGAAATTAATCTTT+TGG 0.288162 5_4:-3480257 Msa0830410:three_prime_UTR
AGAACCCTCGTCAGGGTTAT+AGG 0.296595 5_4:+3480126 None:intergenic
CTGTGGCGAAGTATTTAAAA+TGG 0.300420 5_4:-3479387 Msa0830410:three_prime_UTR
AACCAGTGACCTTACTCTTC+TGG 0.303250 5_4:+3481188 None:intergenic
ATGAAAATAGAGAGTGGAAT+TGG 0.318877 5_4:+3482111 None:intergenic
CTTCGCGCTCAATCTGAAAA+TGG 0.319522 5_4:-3482020 Msa0830410:CDS
AAGCTCGATGCTAGTACTTA+TGG 0.326021 5_4:-3481966 Msa0830410:CDS
TGTCAAATCTCCCTTTGTTC+AGG 0.336864 5_4:-3480527 Msa0830410:intron
GAACCTTCTACTACTTCAAT+AGG 0.368958 5_4:+3481236 None:intergenic
AGTAAATATTGTTGAAAGAG+AGG 0.376476 5_4:-3480191 Msa0830410:three_prime_UTR
TTTATGCTTCAGATTCCTCT+TGG 0.379940 5_4:-3480391 Msa0830410:intron
CCGCCTATTGAAGTAGTAGA+AGG 0.388769 5_4:-3481239 Msa0830410:three_prime_UTR
AAAGAGAGGGAATCAGCTTT+AGG 0.389062 5_4:-3480177 Msa0830410:three_prime_UTR
ACTCGACATGTTTGATGAAA+TGG 0.393357 5_4:+3482068 None:intergenic
TGGAGTTGAAGATTAGTGTA+AGG 0.396756 5_4:+3482131 None:intergenic
GAGGGTAATTAAAGTCATAT+TGG 0.400984 5_4:-3479322 Msa0830410:three_prime_UTR
AGCTTCGGAACGCTGCGTTT+TGG 0.406847 5_4:+3482041 None:intergenic
TCAGATTGAGCGCGAAGCTT+CGG 0.408481 5_4:+3482026 None:intergenic
AGCAATCAGAAGGGGCCTGC+AGG 0.411285 5_4:+3480150 None:intergenic
TGGGCACGAGGGATCTGAAT+TGG 0.428468 5_4:+3481208 None:intergenic
ACCAGTGACCTTACTCTTCT+GGG 0.432028 5_4:+3481189 None:intergenic
AGGAACTGCTAAAACGATAA+TGG 0.441397 5_4:-3481285 Msa0830410:exon
TATAGCAATCCTCCAATCCT+AGG 0.445480 5_4:+3481319 None:intergenic
GATTGGAGGATTGCTATATC+AGG 0.449756 5_4:-3481314 Msa0830410:CDS
GTCACAGAGGACAGACTCAT+TGG 0.461495 5_4:-3480367 Msa0830410:three_prime_UTR
CTCCTTAATGTATTGACTGA+AGG 0.462232 5_4:-3480214 Msa0830410:three_prime_UTR
ATGACTTTAATTACCCTCCT+AGG 0.474442 5_4:+3479327 None:intergenic
ATGCAAACAACATACGGAAT+GGG 0.475833 5_4:-3482173 Msa0830410:CDS
GCAATCAGAAGGGGCCTGCA+GGG 0.479613 5_4:+3480151 None:intergenic
AGAATCATATTCCACGCGTT+GGG 0.480306 5_4:+3480573 None:intergenic
AAGAGAAGAGAAGAGAAGAA+TGG 0.488612 5_4:-3482224 Msa0830410:five_prime_UTR
TCACGAACAGAACCCTCGTC+AGG 0.489907 5_4:+3480118 None:intergenic
CATGCAAACAACATACGGAA+TGG 0.490887 5_4:-3482174 Msa0830410:CDS
TCAGCTTTAGGCACCCCTGC+AGG 0.492155 5_4:-3480165 Msa0830410:three_prime_UTR
TGTTCTCCTCCTCAGAAGTA+AGG 0.501753 5_4:+3481988 None:intergenic
CAGAATCATATTCCACGCGT+TGG 0.505702 5_4:+3480572 None:intergenic
CTGAATAGTACCTGAACAAA+GGG 0.509664 5_4:+3480517 None:intergenic
GTAAATATTGTTGAAAGAGA+GGG 0.512847 5_4:-3480190 Msa0830410:three_prime_UTR
TACTTGGGGCTACTGACCCT+AGG 0.515179 5_4:-3481336 Msa0830410:CDS
GGAGTTGAAGATTAGTGTAA+GGG 0.517742 5_4:+3482132 None:intergenic
CGAGGGATCTGAATTGGCTA+TGG 0.524852 5_4:+3481214 None:intergenic
TGAGCTTCAGCAAGTAAGCC+TGG 0.525679 5_4:+3480295 None:intergenic
GCTACTGACCCTAGGATTGG+AGG 0.529620 5_4:-3481328 Msa0830410:CDS
TGGAAAAGTGAAGAACAGAT+AGG 0.541959 5_4:-3479302 Msa0830410:three_prime_UTR
TGAAATGGCAAAGAGAGAAA+CGG 0.542028 5_4:+3482083 None:intergenic
GAAAACCGTGTTGCAGCTGT+TGG 0.544146 5_4:-3479434 Msa0830410:three_prime_UTR
CATTGGATCAGTTGATGTTG+AGG 0.551202 5_4:-3480350 Msa0830410:three_prime_UTR
AGTATTTAAAATGGTTGATG+AGG 0.551410 5_4:-3479378 Msa0830410:three_prime_UTR
ACCTTACTCTTCTGGGCACG+AGG 0.558993 5_4:+3481196 None:intergenic
GGCACGACTGTTTACCAACC+AGG 0.559294 5_4:-3480313 Msa0830410:three_prime_UTR
CTTCAGCAAGTAAGCCTGGT+TGG 0.561355 5_4:+3480299 None:intergenic
GGGGCTACTGACCCTAGGAT+TGG 0.568553 5_4:-3481331 Msa0830410:CDS
GGTTATAGGTAGCAATCAGA+AGG 0.570961 5_4:+3480140 None:intergenic
CAATCAGAAGGGGCCTGCAG+GGG 0.574993 5_4:+3480152 None:intergenic
AAGACACAGGTATGCCTAGG+AGG 0.584689 5_4:-3479341 Msa0830410:three_prime_UTR
GTTGAGGAGTCTGTGAAGAC+TGG 0.586435 5_4:-3480334 Msa0830410:three_prime_UTR
ATCGCATTGCAATTAACTTG+AGG 0.596901 5_4:-3480084 Msa0830410:intron
CTGTCCTCTGTGACTCCAAG+AGG 0.597863 5_4:+3480376 None:intergenic
GCAAAGACACAGGTATGCCT+AGG 0.597879 5_4:-3479344 Msa0830410:three_prime_UTR
TCTGAATAGTACCTGAACAA+AGG 0.600732 5_4:+3480516 None:intergenic
CGCGTGGAATATGATTCTGA+TGG 0.606136 5_4:-3480568 Msa0830410:three_prime_UTR
AGATGATCTTGCCCAACGCG+TGG 0.610183 5_4:-3480584 Msa0830410:three_prime_UTR
ATAGCAATCCTCCAATCCTA+GGG 0.616159 5_4:+3481320 None:intergenic
TGCTGCGGTCCTTACTTCTG+AGG 0.618181 5_4:-3481997 Msa0830410:CDS
TGCGGTCCTTACTTCTGAGG+AGG 0.618491 5_4:-3481994 Msa0830410:CDS
TGGCCAATAACAGCAGCAAG+AGG 0.621831 5_4:+3481930 None:intergenic
GAGTTGAAGATTAGTGTAAG+GGG 0.624035 5_4:+3482133 None:intergenic
GTTATAGGTAGCAATCAGAA+GGG 0.625655 5_4:+3480141 None:intergenic
TTACTTGCTGAAGCTCATAG+AGG 0.627283 5_4:-3480289 Msa0830410:three_prime_UTR
CACGAACAGAACCCTCGTCA+GGG 0.631145 5_4:+3480119 None:intergenic
TCAATCTGAAAATGGTGCTG+CGG 0.632894 5_4:-3482012 Msa0830410:CDS
GGCCAATAACAGCAGCAAGA+GGG 0.644982 5_4:+3481931 None:intergenic
AGAACAGATAGGAAAACACT+AGG 0.652906 5_4:-3479291 Msa0830410:three_prime_UTR
TACAGACAATGCAAAGACAC+AGG 0.654379 5_4:-3479354 Msa0830410:three_prime_UTR
CAATTCCAACAGCTGCAACA+CGG 0.658426 5_4:+3479429 None:intergenic
TGCTACCTATAACCCTGACG+AGG 0.663872 5_4:-3480131 Msa0830410:three_prime_UTR
AGACACAGGTATGCCTAGGA+GGG 0.664489 5_4:-3479340 Msa0830410:three_prime_UTR
CCTTACTCTTCTGGGCACGA+GGG 0.673244 5_4:+3481197 None:intergenic
GGAGGATTGCTATATCAGGA+AGG 0.673630 5_4:-3481310 Msa0830410:CDS
CCTTCTACTACTTCAATAGG+CGG 0.685944 5_4:+3481239 None:intergenic
ATTGCTATATCAGGAAGGCG+AGG 0.686132 5_4:-3481305 Msa0830410:CDS
TTATAGGTAGCAATCAGAAG+GGG 0.696472 5_4:+3480142 None:intergenic
GCTAAAACGATAATGGCACG+TGG 0.711240 5_4:-3481278 Msa0830410:exon
GCTACCTATAACCCTGACGA+GGG 0.713287 5_4:-3480130 Msa0830410:three_prime_UTR
ACAGAATTTCAGGATAACTG+TGG 0.720569 5_4:-3479404 Msa0830410:three_prime_UTR
GATTCCTCTTGGAGTCACAG+AGG 0.727534 5_4:-3480380 Msa0830410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTCAATAAAAAAAAAA+AGG + chr5_4:3480351-3480370 None:intergenic 10.0%
!! AAAATAACTTTACAAGTTTA+AGG - chr5_4:3480404-3480423 Msa0830410:intron 15.0%
!! TTAAAGGTAAAAATAAGAAA+GGG + chr5_4:3480854-3480873 None:intergenic 15.0%
!! AAATTAAGAGTAATATTTGT+AGG - chr5_4:3480897-3480916 Msa0830410:intron 15.0%
!! TAAATGCTAAAAGTAAAAAT+TGG + chr5_4:3481852-3481871 None:intergenic 15.0%
!!! ATTAGTTTATAAAACTATGA+TGG + chr5_4:3481925-3481944 None:intergenic 15.0%
!! ACATTGACATTATAATATCA+TGG - chr5_4:3480486-3480505 Msa0830410:intron 20.0%
!! CATTGACATTATAATATCAT+GGG - chr5_4:3480487-3480506 Msa0830410:intron 20.0%
!! AAATCAATTCATTAATTCTC+CGG + chr5_4:3480772-3480791 None:intergenic 20.0%
!! TAAAGGTAAAAATAAGAAAG+GGG + chr5_4:3480853-3480872 None:intergenic 20.0%
!! CTTAAAGGTAAAAATAAGAA+AGG + chr5_4:3480855-3480874 None:intergenic 20.0%
!!! CTTTTAAAACAATGACTTAA+AGG + chr5_4:3480870-3480889 None:intergenic 20.0%
!!! TGTTGATGAAATTAATCTTT+TGG - chr5_4:3481252-3481271 Msa0830410:three_prime_UTR 20.0%
!!! TACTTTTAGCATTTACAATT+TGG - chr5_4:3481857-3481876 Msa0830410:intron 20.0%
!! ACTAATAAAAAATGATTGAG+TGG - chr5_4:3481939-3481958 Msa0830410:CDS 20.0%
!! CATCTAATTAACTAAGTATT+AGG + chr5_4:3481981-3482000 None:intergenic 20.0%
!! TATAATTAAAATAAGGGAGA+TGG + chr5_4:3482020-3482039 None:intergenic 20.0%
! TAAGAAAAGGAAGAATTACT+TGG + chr5_4:3479602-3479621 None:intergenic 25.0%
! AAATGTTGAAAGCTAAGAAA+AGG + chr5_4:3479615-3479634 None:intergenic 25.0%
! ACTCATTATTCATTCTTAGA+AGG - chr5_4:3479692-3479711 Msa0830410:intron 25.0%
! AGAAAATGACAGTTACTAAA+TGG - chr5_4:3479790-3479809 Msa0830410:intron 25.0%
! GAAAATGACAGTTACTAAAT+GGG - chr5_4:3479791-3479810 Msa0830410:intron 25.0%
!! ATTAAAACTGCTCTTTTACT+TGG - chr5_4:3480157-3480176 Msa0830410:three_prime_UTR 25.0%
!! TTAAAACTGCTCTTTTACTT+GGG - chr5_4:3480158-3480177 Msa0830410:three_prime_UTR 25.0%
! ATAACTTTACAAGTTTAAGG+TGG - chr5_4:3480407-3480426 Msa0830410:intron 25.0%
! GATGTAGTAACATTGTTAAT+TGG - chr5_4:3480564-3480583 Msa0830410:three_prime_UTR 25.0%
! TTAAGAGTAATATTTGTAGG+TGG - chr5_4:3480900-3480919 Msa0830410:intron 25.0%
! TAAGAGTAATATTTGTAGGT+GGG - chr5_4:3480901-3480920 Msa0830410:intron 25.0%
!! TGAAATTAATCTTTTGGATG+AGG - chr5_4:3481258-3481277 Msa0830410:three_prime_UTR 25.0%
!! GAAATTAATCTTTTGGATGA+GGG - chr5_4:3481259-3481278 Msa0830410:three_prime_UTR 25.0%
! AGTAAATATTGTTGAAAGAG+AGG - chr5_4:3481318-3481337 Msa0830410:CDS 25.0%
! GTAAATATTGTTGAAAGAGA+GGG - chr5_4:3481319-3481338 Msa0830410:CDS 25.0%
! AAAATTATGAAGAATCCTGA+AGG + chr5_4:3481476-3481495 None:intergenic 25.0%
!!! GGCTTAAAAAGTTTTTCAAT+TGG + chr5_4:3481904-3481923 None:intergenic 25.0%
! ATTAACTAAGTATTAGGTCA+GGG + chr5_4:3481975-3481994 None:intergenic 25.0%
! AATTAACTAAGTATTAGGTC+AGG + chr5_4:3481976-3481995 None:intergenic 25.0%
! GGGGTGTATAATTAAAATAA+GGG + chr5_4:3482026-3482045 None:intergenic 25.0%
!! AGGGGTGTATAATTAAAATA+AGG + chr5_4:3482027-3482046 None:intergenic 25.0%
!! AGTATTTAAAATGGTTGATG+AGG - chr5_4:3482131-3482150 Msa0830410:CDS 25.0%
! CTTTTCATGCAAACAACATA+CGG - chr5_4:3479330-3479349 Msa0830410:three_prime_UTR 30.0%
ATGAAAATAGAGAGTGGAAT+TGG + chr5_4:3479401-3479420 None:intergenic 30.0%
!! GTTTTGATGAAAATAGAGAG+TGG + chr5_4:3479407-3479426 None:intergenic 30.0%
TCAAGTAATGATAGAAGAGT+AGG - chr5_4:3479966-3479985 Msa0830410:intron 30.0%
CAAGTAATGATAGAAGAGTA+GGG - chr5_4:3479967-3479986 Msa0830410:intron 30.0%
AAGTAATGATAGAAGAGTAG+GGG - chr5_4:3479968-3479987 Msa0830410:intron 30.0%
!! ATGTGACTTTTTCTTTGATG+AGG - chr5_4:3480018-3480037 Msa0830410:intron 30.0%
!! AATCGTTTGAAAAGTTGGTA+AGG + chr5_4:3480055-3480074 None:intergenic 30.0%
! ACCAACTTTTCAAACGATTT+AGG - chr5_4:3480056-3480075 Msa0830410:intron 30.0%
TCCTAAATCGTTTGAAAAGT+TGG + chr5_4:3480060-3480079 None:intergenic 30.0%
!!! AGTTGAATTTTTGCTGTTGA+AGG - chr5_4:3480097-3480116 Msa0830410:three_prime_UTR 30.0%
AGGATGAAGTTTGCAAATTA+TGG - chr5_4:3480117-3480136 Msa0830410:three_prime_UTR 30.0%
! TAAAACTGCTCTTTTACTTG+GGG - chr5_4:3480159-3480178 Msa0830410:three_prime_UTR 30.0%
AGAAAAATGTTAGCCAGTTT+GGG - chr5_4:3480365-3480384 Msa0830410:three_prime_UTR 30.0%
TAAAAGTAGATATGAGCTCA+AGG - chr5_4:3480450-3480469 Msa0830410:intron 30.0%
AAAAGTAGATATGAGCTCAA+GGG - chr5_4:3480451-3480470 Msa0830410:intron 30.0%
GTTTAGTCATACTTTCTCAA+TGG - chr5_4:3480514-3480533 Msa0830410:intron 30.0%
GATGTAGTAACACTGTTAAT+TGG - chr5_4:3480621-3480640 Msa0830410:intron 30.0%
ACACAACACAAAAACTTCAA+GGG + chr5_4:3480734-3480753 None:intergenic 30.0%
AACACAACACAAAAACTTCA+AGG + chr5_4:3480735-3480754 None:intergenic 30.0%
TGACATCACATCTTTGTAAT+TGG - chr5_4:3480806-3480825 Msa0830410:intron 30.0%
GACATCACATCTTTGTAATT+GGG - chr5_4:3480807-3480826 Msa0830410:intron 30.0%
GCTAGAACTTAATCACATTA+TGG + chr5_4:3481030-3481049 None:intergenic 30.0%
GAGGGTAATTAAAGTCATAT+TGG - chr5_4:3482187-3482206 Msa0830410:exon 30.0%
ATGCAAACAACATACGGAAT+GGG - chr5_4:3479336-3479355 Msa0830410:three_prime_UTR 35.0%
GAGTTGAAGATTAGTGTAAG+GGG + chr5_4:3479379-3479398 None:intergenic 35.0%
GGAGTTGAAGATTAGTGTAA+GGG + chr5_4:3479380-3479399 None:intergenic 35.0%
TGGAGTTGAAGATTAGTGTA+AGG + chr5_4:3479381-3479400 None:intergenic 35.0%
TGAAATGGCAAAGAGAGAAA+CGG + chr5_4:3479429-3479448 None:intergenic 35.0%
ACTCGACATGTTTGATGAAA+TGG + chr5_4:3479444-3479463 None:intergenic 35.0%
GCAAATTATGGTTGTTATGC+AGG - chr5_4:3480129-3480148 Msa0830410:three_prime_UTR 35.0%
AGGAACTGCTAAAACGATAA+TGG - chr5_4:3480224-3480243 Msa0830410:three_prime_UTR 35.0%
GAACCTTCTACTACTTCAAT+AGG + chr5_4:3480276-3480295 None:intergenic 35.0%
GAGAAAAATGTTAGCCAGTT+TGG - chr5_4:3480364-3480383 Msa0830410:three_prime_UTR 35.0%
GAAAAATGTTAGCCAGTTTG+GGG - chr5_4:3480366-3480385 Msa0830410:three_prime_UTR 35.0%
TATTTCTCAATTCCCCAAAC+TGG + chr5_4:3480381-3480400 None:intergenic 35.0%
!! ACTTCTGGTTCTAACTACTA+AGG + chr5_4:3480704-3480723 None:intergenic 35.0%
! TTCAAGGGATATGTTACTTC+TGG + chr5_4:3480719-3480738 None:intergenic 35.0%
CAAAGATGTGATGTCAATCA+TGG + chr5_4:3480802-3480821 None:intergenic 35.0%
CTGAATAGTACCTGAACAAA+GGG + chr5_4:3480995-3481014 None:intergenic 35.0%
TCTGAATAGTACCTGAACAA+AGG + chr5_4:3480996-3481015 None:intergenic 35.0%
TTTATGCTTCAGATTCCTCT+TGG - chr5_4:3481118-3481137 Msa0830410:intron 35.0%
!! CTCCTTAATGTATTGACTGA+AGG - chr5_4:3481295-3481314 Msa0830410:CDS 35.0%
CTCCTTCAGTCAATACATTA+AGG + chr5_4:3481300-3481319 None:intergenic 35.0%
TTATAGGTAGCAATCAGAAG+GGG + chr5_4:3481370-3481389 None:intergenic 35.0%
GTTATAGGTAGCAATCAGAA+GGG + chr5_4:3481371-3481390 None:intergenic 35.0%
! ATCGCATTGCAATTAACTTG+AGG - chr5_4:3481425-3481444 Msa0830410:intron 35.0%
! TTTTCCTCCCTTTACAAGAT+AGG - chr5_4:3481492-3481511 Msa0830410:intron 35.0%
GAGACAAATACGGAAGAAAT+CGG + chr5_4:3481718-3481737 None:intergenic 35.0%
AGAGAAAGAGGAGACAAATA+CGG + chr5_4:3481728-3481747 None:intergenic 35.0%
TTACAATTTGGCATCTGACA+TGG - chr5_4:3481869-3481888 Msa0830410:intron 35.0%
! ACACGGTTTTCAAAACTCAT+TGG + chr5_4:3482066-3482085 None:intergenic 35.0%
ACAGAATTTCAGGATAACTG+TGG - chr5_4:3482105-3482124 Msa0830410:CDS 35.0%
! CTGTGGCGAAGTATTTAAAA+TGG - chr5_4:3482122-3482141 Msa0830410:CDS 35.0%
ATGACTTTAATTACCCTCCT+AGG + chr5_4:3482185-3482204 None:intergenic 35.0%
TGGAAAAGTGAAGAACAGAT+AGG - chr5_4:3482207-3482226 Msa0830410:five_prime_UTR 35.0%
AGAACAGATAGGAAAACACT+AGG - chr5_4:3482218-3482237 Msa0830410:five_prime_UTR 35.0%
CATGCAAACAACATACGGAA+TGG - chr5_4:3479335-3479354 Msa0830410:three_prime_UTR 40.0%
! TCAATCTGAAAATGGTGCTG+CGG - chr5_4:3479497-3479516 Msa0830410:intron 40.0%
AAGCTCGATGCTAGTACTTA+TGG - chr5_4:3479543-3479562 Msa0830410:intron 40.0%
AGTCACACTATGGGTCTATT+TGG + chr5_4:3479867-3479886 None:intergenic 40.0%
ATCCAGCATAGTCACACTAT+GGG + chr5_4:3479876-3479895 None:intergenic 40.0%
AATCCAGCATAGTCACACTA+TGG + chr5_4:3479877-3479896 None:intergenic 40.0%
GATAGAAGAGTAGGGGAAAA+TGG - chr5_4:3479975-3479994 Msa0830410:intron 40.0%
ATAGCAATCCTCCAATCCTA+GGG + chr5_4:3480192-3480211 None:intergenic 40.0%
TATAGCAATCCTCCAATCCT+AGG + chr5_4:3480193-3480212 None:intergenic 40.0%
GATTGGAGGATTGCTATATC+AGG - chr5_4:3480195-3480214 Msa0830410:three_prime_UTR 40.0%
CCTTCTACTACTTCAATAGG+CGG + chr5_4:3480273-3480292 None:intergenic 40.0%
AATTCTCCGGCAGAAAAAGA+GGG + chr5_4:3480759-3480778 None:intergenic 40.0%
TAATTCTCCGGCAGAAAAAG+AGG + chr5_4:3480760-3480779 None:intergenic 40.0%
AGAATCATATTCCACGCGTT+GGG + chr5_4:3480939-3480958 None:intergenic 40.0%
TGTCAAATCTCCCTTTGTTC+AGG - chr5_4:3480982-3481001 Msa0830410:intron 40.0%
! CATTGGATCAGTTGATGTTG+AGG - chr5_4:3481159-3481178 Msa0830410:intron 40.0%
! TTACTTGCTGAAGCTCATAG+AGG - chr5_4:3481220-3481239 Msa0830410:three_prime_UTR 40.0%
AAAGAGAGGGAATCAGCTTT+AGG - chr5_4:3481332-3481351 Msa0830410:CDS 40.0%
GGTTATAGGTAGCAATCAGA+AGG + chr5_4:3481372-3481391 None:intergenic 40.0%
ATCTACAATGTTGCTCCTTC+AGG - chr5_4:3481458-3481477 Msa0830410:intron 40.0%
TCTTGGGCCTATCTTGTAAA+GGG + chr5_4:3481502-3481521 None:intergenic 40.0%
ATCTTGGGCCTATCTTGTAA+AGG + chr5_4:3481503-3481522 None:intergenic 40.0%
!! AATGAACCAGCTGTTGTTTC+CGG + chr5_4:3481828-3481847 None:intergenic 40.0%
TGGAATTGCGACAGAATTTC+AGG - chr5_4:3482095-3482114 Msa0830410:CDS 40.0%
TACAGACAATGCAAAGACAC+AGG - chr5_4:3482155-3482174 Msa0830410:CDS 40.0%
CTTCGCGCTCAATCTGAAAA+TGG - chr5_4:3479489-3479508 Msa0830410:intron 45.0%
TGTTCTCCTCCTCAGAAGTA+AGG + chr5_4:3479524-3479543 None:intergenic 45.0%
TTCCCTCTTGCTGCTGTTAT+TGG - chr5_4:3479576-3479595 Msa0830410:intron 45.0%
AGAAGAGTAGGGGAAAATGG+TGG - chr5_4:3479978-3479997 Msa0830410:intron 45.0%
GGAGGATTGCTATATCAGGA+AGG - chr5_4:3480199-3480218 Msa0830410:three_prime_UTR 45.0%
ATTGCTATATCAGGAAGGCG+AGG - chr5_4:3480204-3480223 Msa0830410:three_prime_UTR 45.0%
! GCTAAAACGATAATGGCACG+TGG - chr5_4:3480231-3480250 Msa0830410:three_prime_UTR 45.0%
CCGCCTATTGAAGTAGTAGA+AGG - chr5_4:3480270-3480289 Msa0830410:three_prime_UTR 45.0%
ACCAGTGACCTTACTCTTCT+GGG + chr5_4:3480323-3480342 None:intergenic 45.0%
AACCAGTGACCTTACTCTTC+TGG + chr5_4:3480324-3480343 None:intergenic 45.0%
AGATATGAGCTCAAGGGCTA+AGG - chr5_4:3480457-3480476 Msa0830410:intron 45.0%
ATTCTCCGGCAGAAAAAGAG+GGG + chr5_4:3480758-3480777 None:intergenic 45.0%
CAGAATCATATTCCACGCGT+TGG + chr5_4:3480940-3480959 None:intergenic 45.0%
CGCGTGGAATATGATTCTGA+TGG - chr5_4:3480941-3480960 Msa0830410:intron 45.0%
TCATCGCCACACAAGATCTT+GGG + chr5_4:3481518-3481537 None:intergenic 45.0%
GAGCAGGAAATGAAGACACA+GGG + chr5_4:3481696-3481715 None:intergenic 45.0%
AATACGGAAGAAATCGGAGC+AGG + chr5_4:3481712-3481731 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAAG+AGG + chr5_4:3481740-3481759 None:intergenic 45.0%
!! ATGAACCAGCTGTTGTTTCC+GGG + chr5_4:3481827-3481846 None:intergenic 45.0%
CAATTCCAACAGCTGCAACA+CGG + chr5_4:3482083-3482102 None:intergenic 45.0%
TCAGATTGAGCGCGAAGCTT+CGG + chr5_4:3479486-3479505 None:intergenic 50.0%
GGCCAATAACAGCAGCAAGA+GGG + chr5_4:3479581-3479600 None:intergenic 50.0%
TGGCCAATAACAGCAGCAAG+AGG + chr5_4:3479582-3479601 None:intergenic 50.0%
GACCCATAGTGTGACTATGC+TGG - chr5_4:3479871-3479890 Msa0830410:intron 50.0%
CGAGGGATCTGAATTGGCTA+TGG + chr5_4:3480298-3480317 None:intergenic 50.0%
! GTGTTCCCCTCTTTTTCTGC+CGG - chr5_4:3480750-3480769 Msa0830410:intron 50.0%
GATTCCTCTTGGAGTCACAG+AGG - chr5_4:3481129-3481148 Msa0830410:intron 50.0%
GTCACAGAGGACAGACTCAT+TGG - chr5_4:3481142-3481161 Msa0830410:intron 50.0%
GTTGAGGAGTCTGTGAAGAC+TGG - chr5_4:3481175-3481194 Msa0830410:intron 50.0%
CTTCAGCAAGTAAGCCTGGT+TGG + chr5_4:3481213-3481232 None:intergenic 50.0%
TGAGCTTCAGCAAGTAAGCC+TGG + chr5_4:3481217-3481236 None:intergenic 50.0%
TGCTACCTATAACCCTGACG+AGG - chr5_4:3481378-3481397 Msa0830410:intron 50.0%
GCTACCTATAACCCTGACGA+GGG - chr5_4:3481379-3481398 Msa0830410:intron 50.0%
AGAACCCTCGTCAGGGTTAT+AGG + chr5_4:3481386-3481405 None:intergenic 50.0%
TGGGCCTATCTTGTAAAGGG+AGG + chr5_4:3481499-3481518 None:intergenic 50.0%
GATAGGCCCAAGATCTTGTG+TGG - chr5_4:3481509-3481528 Msa0830410:intron 50.0%
CTCATCGCCACACAAGATCT+TGG + chr5_4:3481519-3481538 None:intergenic 50.0%
CAAGATCTTGTGTGGCGATG+AGG - chr5_4:3481517-3481536 Msa0830410:intron 50.0%
CAACCCTTATCCCACTGAGT+GGG - chr5_4:3481573-3481592 Msa0830410:intron 50.0%
AACCCTTATCCCACTGAGTG+GGG - chr5_4:3481574-3481593 Msa0830410:intron 50.0%
AACCCCACTCAGTGGGATAA+GGG + chr5_4:3481579-3481598 None:intergenic 50.0%
GGAGCAGGAAATGAAGACAC+AGG + chr5_4:3481697-3481716 None:intergenic 50.0%
TGGAAGATCTGCACTGCAGA+GGG + chr5_4:3482046-3482065 None:intergenic 50.0%
TTGGAAGATCTGCACTGCAG+AGG + chr5_4:3482047-3482066 None:intergenic 50.0%
GAAAACCGTGTTGCAGCTGT+TGG - chr5_4:3482075-3482094 Msa0830410:CDS 50.0%
GCAAAGACACAGGTATGCCT+AGG - chr5_4:3482165-3482184 Msa0830410:CDS 50.0%
AAGACACAGGTATGCCTAGG+AGG - chr5_4:3482168-3482187 Msa0830410:CDS 50.0%
AGACACAGGTATGCCTAGGA+GGG - chr5_4:3482169-3482188 Msa0830410:CDS 50.0%
! AGCTTCGGAACGCTGCGTTT+TGG + chr5_4:3479471-3479490 None:intergenic 55.0%
TGCTGCGGTCCTTACTTCTG+AGG - chr5_4:3479512-3479531 Msa0830410:intron 55.0%
! TGCGGTCCTTACTTCTGAGG+AGG - chr5_4:3479515-3479534 Msa0830410:intron 55.0%
TACTTGGGGCTACTGACCCT+AGG - chr5_4:3480173-3480192 Msa0830410:three_prime_UTR 55.0%
GCTACTGACCCTAGGATTGG+AGG - chr5_4:3480181-3480200 Msa0830410:three_prime_UTR 55.0%
TGGGCACGAGGGATCTGAAT+TGG + chr5_4:3480304-3480323 None:intergenic 55.0%
CCTTACTCTTCTGGGCACGA+GGG + chr5_4:3480315-3480334 None:intergenic 55.0%
ACCTTACTCTTCTGGGCACG+AGG + chr5_4:3480316-3480335 None:intergenic 55.0%
GCCCAGAAGAGTAAGGTCAC+TGG - chr5_4:3480319-3480338 Msa0830410:three_prime_UTR 55.0%
AGATGATCTTGCCCAACGCG+TGG - chr5_4:3480925-3480944 Msa0830410:intron 55.0%
CTGTCCTCTGTGACTCCAAG+AGG + chr5_4:3481136-3481155 None:intergenic 55.0%
GGCACGACTGTTTACCAACC+AGG - chr5_4:3481196-3481215 Msa0830410:intron 55.0%
CACGAACAGAACCCTCGTCA+GGG + chr5_4:3481393-3481412 None:intergenic 55.0%
TCACGAACAGAACCCTCGTC+AGG + chr5_4:3481394-3481413 None:intergenic 55.0%
CCACTCAGTGGGATAAGGGT+TGG + chr5_4:3481575-3481594 None:intergenic 55.0%
CCAACCCTTATCCCACTGAG+TGG - chr5_4:3481572-3481591 Msa0830410:intron 55.0%
CAACCCCACTCAGTGGGATA+AGG + chr5_4:3481580-3481599 None:intergenic 55.0%
CTTATCCCACTGAGTGGGGT+TGG - chr5_4:3481578-3481597 Msa0830410:intron 55.0%
AGCTTCCAACCCCACTCAGT+GGG + chr5_4:3481586-3481605 None:intergenic 55.0%
TAGCTTCCAACCCCACTCAG+TGG + chr5_4:3481587-3481606 None:intergenic 55.0%
!! ACCAGCTGTTGTTTCCGGGA+GGG + chr5_4:3481823-3481842 None:intergenic 55.0%
!! AACCAGCTGTTGTTTCCGGG+AGG + chr5_4:3481824-3481843 None:intergenic 55.0%
GGAAGATCTGCACTGCAGAG+GGG + chr5_4:3482045-3482064 None:intergenic 55.0%
GGGGCTACTGACCCTAGGAT+TGG - chr5_4:3480178-3480197 Msa0830410:three_prime_UTR 60.0%
CCCTCGTGCCCAGAAGAGTA+AGG - chr5_4:3480312-3480331 Msa0830410:three_prime_UTR 60.0%
!! TCAGCTTTAGGCACCCCTGC+AGG - chr5_4:3481344-3481363 Msa0830410:CDS 60.0%
CAATCAGAAGGGGCCTGCAG+GGG + chr5_4:3481360-3481379 None:intergenic 60.0%
GCAATCAGAAGGGGCCTGCA+GGG + chr5_4:3481361-3481380 None:intergenic 60.0%
AGCAATCAGAAGGGGCCTGC+AGG + chr5_4:3481362-3481381 None:intergenic 60.0%
!! CCAGCTGTTGTTTCCGGGAG+GGG + chr5_4:3481822-3481841 None:intergenic 60.0%
CTCTCTCTCTCCTCCCCTCC+CGG - chr5_4:3481806-3481825 Msa0830410:intron 65.0%
!! GCTGTTGTTTCCGGGAGGGG+AGG + chr5_4:3481819-3481838 None:intergenic 65.0%
CCCCTCCCGGAAACAACAGC+TGG - chr5_4:3481819-3481838 Msa0830410:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 3479286 3482245 3479286 ID=Msa0830410;Name=Msa0830410
chr5_4 mRNA 3479286 3482245 3479286 ID=Msa0830410-mRNA-1;Parent=Msa0830410;Name=Msa0830410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=50|1|1|1|0.75|0.8|5|680|119
chr5_4 exon 3479286 3479478 3479286 ID=Msa0830410-mRNA-1:exon:1347;Parent=Msa0830410-mRNA-1
chr5_4 exon 3480085 3480401 3480085 ID=Msa0830410-mRNA-1:exon:1346;Parent=Msa0830410-mRNA-1
chr5_4 exon 3480528 3480612 3480528 ID=Msa0830410-mRNA-1:exon:1345;Parent=Msa0830410-mRNA-1
chr5_4 exon 3481203 3481380 3481203 ID=Msa0830410-mRNA-1:exon:1344;Parent=Msa0830410-mRNA-1
chr5_4 exon 3481929 3482245 3481929 ID=Msa0830410-mRNA-1:exon:1343;Parent=Msa0830410-mRNA-1
chr5_4 five_prime_UTR 3482196 3482245 3482196 ID=Msa0830410-mRNA-1:five_prime_utr;Parent=Msa0830410-mRNA-1
chr5_4 CDS 3481929 3482195 3481929 ID=Msa0830410-mRNA-1:cds;Parent=Msa0830410-mRNA-1
chr5_4 CDS 3481288 3481380 3481288 ID=Msa0830410-mRNA-1:cds;Parent=Msa0830410-mRNA-1
chr5_4 three_prime_UTR 3481203 3481287 3481203 ID=Msa0830410-mRNA-1:three_prime_utr;Parent=Msa0830410-mRNA-1
chr5_4 three_prime_UTR 3480528 3480612 3480528 ID=Msa0830410-mRNA-1:three_prime_utr;Parent=Msa0830410-mRNA-1
chr5_4 three_prime_UTR 3480085 3480401 3480085 ID=Msa0830410-mRNA-1:three_prime_utr;Parent=Msa0830410-mRNA-1
chr5_4 three_prime_UTR 3479286 3479478 3479286 ID=Msa0830410-mRNA-1:three_prime_utr;Parent=Msa0830410-mRNA-1
Gene Sequence

>Msa0830410

ATGCAAACAACATACGGAATGGGTTTCAGTTTAACACAAACCCCTTACACTAATCTTCAACTCCAATTCCACTCTCTATTTTCATCAAAACCGTTTCTCTCTTTGCCATTTCATCAAACATGTCGAGTTCAACCAAAACGCAGCGTTCCGAAGCTTCGCGCTCAATCTGAAAATGGTGCTGCGGTCCTTACTTCTGAGGAGGAGAACAAGCTCGATGCTAGTACTTATGGAAGACAGTACTTCCCTCTTGCTGCTGTTATTGGCCAAGATGCTATTAAAACTGCTCTTTTACTTGGGGCTACTGACCCTAGGATTGGAGGATTGCTATATCAGGAAGGCGAGGAACTGCTAAAACGATAA

Protein sequence

>Msa0830410

MQTTYGMGFSLTQTPYTNLQLQFHSLFSSKPFLSLPFHQTCRVQPKRSVPKLRAQSENGAAVLTSEEENKLDASTYGRQYFPLAAVIGQDAIKTALLLGATDPRIGGLLYQEGEELLKR*