AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790830 MtrunA17_Chr7g0266491 97.496 559 8 1 1 559 1 553 0.0 1103
Msa0790830 MtrunA17_Chr4g0003161 29.053 475 309 9 68 528 1 461 1.24e-58 203
Msa0790830 MtrunA17_Chr2g0333241 28.471 425 294 4 68 488 1 419 1.36e-56 197
Msa0790830 MtrunA17_Chr8g0350161 33.113 302 189 5 76 366 69 368 1.17e-38 145
Msa0790830 MtrunA17_Chr4g0073891 33.702 181 109 2 185 354 438 618 4.77e-25 109
Msa0790830 MtrunA17_Chr7g0253151 31.061 132 85 2 256 381 7 138 9.07e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790830 AT5G03940.1 79.820 555 101 3 6 559 20 564 0.0 888
Msa0790830 AT1G48900.1 29.424 469 315 9 68 528 1 461 1.07e-61 211
Msa0790830 AT1G48900.2 29.508 427 289 7 68 489 1 420 5.25e-61 208
Msa0790830 AT1G15310.1 27.862 463 304 8 68 520 1 443 2.95e-52 186
Msa0790830 AT5G49500.1 27.332 461 309 9 68 514 1 449 1.64e-51 184
Msa0790830 AT5G49500.2 29.012 324 222 5 197 514 6 327 1.68e-41 154
Msa0790830 AT2G45770.1 34.266 286 176 4 91 366 82 365 1.55e-40 151
Msa0790830 AT4G30600.2 33.702 181 109 2 185 354 441 621 2.15e-24 107
Msa0790830 AT4G30600.1 33.702 181 109 2 185 354 441 621 2.15e-24 107

Find 185 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGGAATTTGGAGATTA+TGG 0.167511 5_3:-1653688 Msa0790830:CDS
TAATTACATACATTTGATTT+TGG 0.169710 5_3:+1651966 None:intergenic
TCGAGAAGCAGAGAGGAATT+TGG 0.235766 5_3:-1653697 Msa0790830:CDS
AAAAGAGTTGCTCAGGATTC+AGG 0.239715 5_3:-1653503 Msa0790830:CDS
CCTGGAGTTTGGTGAAATTT+AGG 0.247585 5_3:-1652125 Msa0790830:three_prime_UTR
TTCTCCTTTGAGTTTGTTCC+AGG 0.251259 5_3:+1657831 None:intergenic
AGGCAACCTCCTCGTGGATT+TGG 0.264733 5_3:-1652320 Msa0790830:CDS
CGAAAGTCAATTCAAAATAT+TGG 0.268031 5_3:+1652052 None:intergenic
CCGCGTCCTACCAACTTAAT+TGG 0.278636 5_3:+1654287 None:intergenic
GGGGATTCTGCCAACAGTTC+TGG 0.296671 5_3:+1653536 None:intergenic
AATCTTGAGATTGGAATAAC+TGG 0.302413 5_3:-1655296 Msa0790830:CDS
AGGCTCCACAATATTGTCTT+TGG 0.320488 5_3:+1657627 None:intergenic
AGCAAATTATTTCAAGAAAC+AGG 0.324652 5_3:-1656700 Msa0790830:intron
TTCTACCCCGACCGAATGGC+TGG 0.326392 5_3:-1654239 Msa0790830:CDS
ACTACTTTCAATCTTGAGAT+TGG 0.343939 5_3:-1655305 Msa0790830:CDS
AATGACAGTGGGACCAGATT+TGG 0.346217 5_3:+1656773 None:intergenic
GGCAACCTCCTCGTGGATTT+GGG 0.348400 5_3:-1652319 Msa0790830:CDS
TATTGACCAGCTTACTATCT+TGG 0.348505 5_3:-1656540 Msa0790830:CDS
CGAATGGCTGGGCGAATACT+AGG 0.353253 5_3:-1654227 Msa0790830:CDS
TTTGGTTTCAGAAAGAGATA+TGG 0.363560 5_3:-1657960 Msa0790830:intron
CGAGTCATTGGGATGATTCC+TGG 0.363618 5_3:-1653973 Msa0790830:CDS
AACTATTTCAAATGCGTGTT+CGG 0.364308 5_3:-1653325 Msa0790830:CDS
TGGAGCCTATGCGAGATATT+AGG 0.368726 5_3:-1657612 Msa0790830:CDS
AACTCGTACTGTTGCACAAA+TGG 0.369291 5_3:-1654007 Msa0790830:CDS
TTTCTCCTCCTTGCAGTGCC+AGG 0.373193 5_3:+1652383 None:intergenic
GTTCCATGATGACAGGTATC+TGG 0.374730 5_3:-1654314 Msa0790830:intron
ATTTCAGCCCTGACCACAAC+TGG 0.384313 5_3:+1657886 None:intergenic
ACCTTAACCAATTGTTGATC+GGG 0.385466 5_3:+1657395 None:intergenic
CTGAGTTGAGTTGGTGAAGA+TGG 0.386701 5_3:-1658196 Msa0790830:exon
GGTTCTGTGTCCCGAGTCAT+TGG 0.391809 5_3:-1653985 Msa0790830:CDS
TGATTCGTCCAGTTGTGGTC+AGG 0.396228 5_3:-1657894 Msa0790830:CDS
CTAGTATTCGCCCAGCCATT+CGG 0.398693 5_3:+1654228 None:intergenic
CATCTGTCTGTCTCTTGAAC+AGG 0.400352 5_3:-1651878 Msa0790830:three_prime_UTR
GCTTACTATCTTGGGTAAAC+AGG 0.402642 5_3:-1656531 Msa0790830:intron
TGCACAAACCTTCTTACAAC+AGG 0.405371 5_3:+1657467 None:intergenic
ATGAGTGTTGTCCTGGAGTT+TGG 0.414297 5_3:-1652136 Msa0790830:three_prime_UTR
AAGAGTTGCATGCTAGTTGC+CGG 0.418576 5_3:-1656584 Msa0790830:CDS
GGGAGATGTCCTTTCATTTG+TGG 0.426105 5_3:-1654201 Msa0790830:CDS
TGGCTGGACTCCAGGGAGTT+GGG 0.427729 5_3:-1656746 Msa0790830:CDS
ATTGACCAGCTTACTATCTT+GGG 0.431760 5_3:-1656539 Msa0790830:CDS
TGTTGGCAGAATCCCCTGTT+AGG 0.440576 5_3:-1653529 Msa0790830:CDS
CACCTTCCATTACACCCATT+AGG 0.440609 5_3:+1653294 None:intergenic
TTGGTTTCAGAAAGAGATAT+GGG 0.441886 5_3:-1657959 Msa0790830:intron
CGAAAGAATTTCTGTAAGAA+AGG 0.442635 5_3:+1658070 None:intergenic
TTAGTTCTAATTCTGCATAC+AGG 0.442859 5_3:+1651909 None:intergenic
TCGGTACCTGCTGTATATAC+AGG 0.444563 5_3:+1656065 None:intergenic
AGAAGAAGAAGAGGAGGAGA+AGG 0.447003 5_3:+1658122 None:intergenic
TGATGAACTTGTACAATTGA+TGG 0.450286 5_3:-1656823 Msa0790830:CDS
TGTGCAATCTGTTACCGATC+AGG 0.450503 5_3:-1657450 Msa0790830:CDS
TATAGTAATGAGTGTTGTCC+TGG 0.453706 5_3:-1652143 Msa0790830:three_prime_UTR
GTAGTAGTACTGAGTTGAGT+TGG 0.454449 5_3:-1658205 Msa0790830:five_prime_UTR
ACCATCTAGCTTTGTCAAGA+TGG 0.456368 5_3:+1655271 None:intergenic
TTGTTTATTTCCAGAGGAAA+GGG 0.462852 5_3:-1653564 Msa0790830:intron
ATGAGTTAAAAGATGTGAAA+CGG 0.463351 5_3:-1655818 Msa0790830:CDS
ATGTTTGGTCAGTTAACTAC+TGG 0.464315 5_3:-1657865 Msa0790830:CDS
ATCTGTTACCGATCAGGCTG+TGG 0.465911 5_3:-1657444 Msa0790830:CDS
TCAAAACTATAAATGAATCA+AGG 0.466958 5_3:+1652007 None:intergenic
GAAATAGTTGAGCTACAAGT+TGG 0.467353 5_3:+1653339 None:intergenic
TTCAGGGAAAACAGAGCAGC+AGG 0.469594 5_3:-1653486 Msa0790830:intron
TTGGCTGGACTCCAGGGAGT+TGG 0.470608 5_3:-1656747 Msa0790830:CDS
ATTCGCCCAGCCATTCGGTC+GGG 0.474602 5_3:+1654233 None:intergenic
GTGGTCAGGGCTGAAATGTT+TGG 0.475946 5_3:-1657880 Msa0790830:CDS
ACCCGATCAACAATTGGTTA+AGG 0.476728 5_3:-1657396 Msa0790830:intron
GACCTTAACCAATTGTTGAT+CGG 0.476809 5_3:+1657394 None:intergenic
GAGAGAGAGGCGTCGACAAA+TGG 0.477474 5_3:+1658154 None:intergenic
GTCCATACCTTTGCCATACC+AGG 0.477722 5_3:+1653955 None:intergenic
GAAGAACCTAATGGGTGTAA+TGG 0.479055 5_3:-1653300 Msa0790830:CDS
ATTGATGGGTGGAGAGGTCT+CGG 0.479082 5_3:-1656808 Msa0790830:CDS
AAATGTATGTAATTATGAAA+AGG 0.479872 5_3:-1651958 Msa0790830:three_prime_UTR
AAAGAGTTGCTCAGGATTCA+GGG 0.481124 5_3:-1653502 Msa0790830:CDS
AGCACTTAAGACAGAGGAAA+AGG 0.481940 5_3:-1653240 Msa0790830:intron
ACAACTAACAAGACTTCTGT+TGG 0.482412 5_3:+1655786 None:intergenic
TGTTCGGATGAAGAACCTAA+TGG 0.483285 5_3:-1653309 Msa0790830:CDS
TAGGAGGAAAAGAGTTGCTC+AGG 0.484363 5_3:-1653510 Msa0790830:CDS
GCCATTCGGTCGGGGTAGAA+AGG 0.484456 5_3:+1654242 None:intergenic
TGTCCTTTCATTTGTGGAGA+AGG 0.486581 5_3:-1654195 Msa0790830:CDS
ACAGATAGACAAAGCAATGA+TGG 0.487229 5_3:-1655841 Msa0790830:intron
CTTGTTTATTTCCAGAGGAA+AGG 0.488526 5_3:-1653565 Msa0790830:intron
TGAGTTAAAAGATGTGAAAC+GGG 0.488586 5_3:-1655817 Msa0790830:CDS
GGCTGGGCGAATACTAGGAA+TGG 0.491731 5_3:-1654222 Msa0790830:CDS
CATTGGGATGATTCCTGGTA+TGG 0.493705 5_3:-1653968 Msa0790830:CDS
AGTCAAACCCGATCAACAAT+TGG 0.494660 5_3:-1657402 Msa0790830:CDS
ACTCGTACTGTTGCACAAAT+GGG 0.495670 5_3:-1654006 Msa0790830:CDS
CTACTGGTCTTGAATCTGCC+TGG 0.496338 5_3:-1657849 Msa0790830:CDS
TAAGTCTTCCTGTTGTAAGA+AGG 0.496852 5_3:-1657475 Msa0790830:CDS
AACAGAAGTCTTGTTAGTTG+TGG 0.499790 5_3:-1655784 Msa0790830:CDS
TTTGAAATGCATATATTGGA+TGG 0.502839 5_3:-1651989 Msa0790830:three_prime_UTR
ACCGATCAGGCTGTGGGTGT+TGG 0.504964 5_3:-1657437 Msa0790830:CDS
AGAGTTGCATGCTAGTTGCC+GGG 0.509180 5_3:-1656583 Msa0790830:CDS
TTCTTACAGAAATTCTTTCG+CGG 0.510015 5_3:-1658067 Msa0790830:intron
TCTGCTTCTCGAATTTGAGC+AGG 0.510234 5_3:+1653708 None:intergenic
GTTCGGATGAAGAACCTAAT+GGG 0.510846 5_3:-1653308 Msa0790830:CDS
TGCCTATATCAGGCTCCACC+TGG 0.515675 5_3:-1652401 Msa0790830:intron
GTGGTTATTGTTGACACTGC+TGG 0.517304 5_3:-1655981 Msa0790830:CDS
AAGCGTAACTGTGAGAAGAA+TGG 0.518182 5_3:-1657920 Msa0790830:CDS
GCCATCTTGACAAAGCTAGA+TGG 0.519028 5_3:-1655272 Msa0790830:CDS
CGGTTGTCTTCCCAACTCCC+TGG 0.520103 5_3:+1656736 None:intergenic
GTATGTAATTATGAAAAGGA+TGG 0.520684 5_3:-1651954 Msa0790830:three_prime_UTR
TTAGTTGTGGATGCTATGAC+AGG 0.524157 5_3:-1655771 Msa0790830:CDS
TCCTCAAGATTACTAAGTGT+TGG 0.525137 5_3:+1653263 None:intergenic
CCAATTAAGTTGGTAGGACG+CGG 0.525708 5_3:-1654287 Msa0790830:CDS
CTCCTCCTTGCAGTGCCAGG+TGG 0.527092 5_3:+1652386 None:intergenic
ATCTGGAAAGCCAATTAAGT+TGG 0.532188 5_3:-1654297 Msa0790830:CDS
GAAAGAATTTCTGTAAGAAA+GGG 0.533546 5_3:+1658071 None:intergenic
GATTCGTCCAGTTGTGGTCA+GGG 0.534044 5_3:-1657893 Msa0790830:CDS
CCTTGTTTAGCAATGTCTGA+TGG 0.535641 5_3:+1656035 None:intergenic
GCTGGGCGAATACTAGGAAT+GGG 0.537490 5_3:-1654221 Msa0790830:CDS
ATTTGCTAACTTTGCACACA+CGG 0.543445 5_3:+1656716 None:intergenic
ATAGTCCAGTTTGGCAGTTG+TGG 0.544481 5_3:-1658273 None:intergenic
GGTAGGACGCGGGGAACGCA+TGG 0.546745 5_3:-1654276 Msa0790830:CDS
TCCAACACCCACAGCCTGAT+CGG 0.547331 5_3:+1657436 None:intergenic
ATTGACATGCAACAATATGA+TGG 0.551838 5_3:-1652269 Msa0790830:three_prime_UTR
CCTAAATTTCACCAAACTCC+AGG 0.553319 5_3:+1652125 None:intergenic
CCATCAGACATTGCTAAACA+AGG 0.553327 5_3:-1656035 Msa0790830:CDS
GAGAGGCGTCGACAAATGGC+GGG 0.554493 5_3:+1658158 None:intergenic
CAGGAATCATCCCAATGACT+CGG 0.557170 5_3:+1653974 None:intergenic
ATGACAGGGCAAGAAGCAGC+AGG 0.557985 5_3:-1655756 Msa0790830:intron
TTCGCCCAGCCATTCGGTCG+GGG 0.560357 5_3:+1654234 None:intergenic
ACCTTTCTACCCCGACCGAA+TGG 0.561059 5_3:-1654243 Msa0790830:CDS
TCTACCCCGACCGAATGGCT+GGG 0.561326 5_3:-1654238 Msa0790830:CDS
TGACACTGCTGGTAGGCTGC+AGG 0.561863 5_3:-1655970 Msa0790830:intron
CAAAACTATAAATGAATCAA+GGG 0.563295 5_3:+1652008 None:intergenic
GTAAGCTGGTCAATAGCAGC+AGG 0.564367 5_3:+1656548 None:intergenic
AATTTGGATCAACATGTCAC+TGG 0.568531 5_3:-1652236 Msa0790830:three_prime_UTR
TATTCGCCCAGCCATTCGGT+CGG 0.569867 5_3:+1654232 None:intergenic
TGAATCGATCTAACAATGGA+AGG 0.573224 5_3:+1652170 None:intergenic
AAGGGAAAAGCCAGAACTGT+TGG 0.573499 5_3:-1653546 Msa0790830:CDS
TTTGACCAAAGACAATATTG+TGG 0.573841 5_3:-1657632 Msa0790830:CDS
GGAGAAAGAAAGCAGAGTCA+AGG 0.579685 5_3:-1652367 Msa0790830:CDS
GTGCCTTCTCCACAAATGAA+AGG 0.579893 5_3:+1654192 None:intergenic
AGTCAATTCAAAATATTGGA+TGG 0.581427 5_3:+1652056 None:intergenic
AGGCTCCACCTGGCACTGCA+AGG 0.582090 5_3:-1652391 Msa0790830:CDS
AAGAGACAGACAGATGATGC+AGG 0.582560 5_3:+1651885 None:intergenic
AGCAGGTCTATAAACATCCC+CGG 0.585086 5_3:+1656565 None:intergenic
AGAGTCAAGGAGGTTATTTG+CGG 0.586249 5_3:-1652354 Msa0790830:CDS
TGGAACAAACTCAAAGGAGA+AGG 0.586363 5_3:-1657829 Msa0790830:intron
AGAGAGGCGTCGACAAATGG+CGG 0.588145 5_3:+1658157 None:intergenic
GATGAACTTGTACAATTGAT+GGG 0.589831 5_3:-1656822 Msa0790830:CDS
GCCAACACTTAGTAATCTTG+AGG 0.591019 5_3:-1653264 Msa0790830:CDS
TTATTGTTGACACTGCTGGT+AGG 0.592237 5_3:-1655977 Msa0790830:CDS
AAGGTTCGATGATGAGAGAG+AGG 0.594453 5_3:+1658141 None:intergenic
GGAAAGCCAATTAAGTTGGT+AGG 0.595007 5_3:-1654293 Msa0790830:CDS
GGATATGATTCGTCCAGTTG+TGG 0.595288 5_3:-1657899 Msa0790830:CDS
CAATTAAGTTGGTAGGACGC+GGG 0.595793 5_3:-1654286 Msa0790830:CDS
AGCAGCTTTGAGTGTCAAAG+AGG 0.598337 5_3:-1655234 Msa0790830:intron
TTGACATGCAACAATATGAT+GGG 0.598344 5_3:-1652268 Msa0790830:three_prime_UTR
AACCTAATGGGTGTAATGGA+AGG 0.598961 5_3:-1653296 Msa0790830:CDS
GACGTCCCTGTATATACAGC+AGG 0.602587 5_3:-1656071 Msa0790830:CDS
CGGTACCTGCTGTATATACA+GGG 0.602823 5_3:+1656066 None:intergenic
GTTCTGTGTCCCGAGTCATT+GGG 0.606542 5_3:-1653984 Msa0790830:CDS
CAGAAATGAGATGTACGTGC+GGG 0.606982 5_3:-1652102 Msa0790830:three_prime_UTR
TCTGTTACCGATCAGGCTGT+GGG 0.610240 5_3:-1657443 Msa0790830:CDS
CTAGATGGTGATTCAAGAGG+TGG 0.610528 5_3:-1655257 Msa0790830:CDS
TGGCAGAATCCCCTGTTAGG+AGG 0.611355 5_3:-1653526 Msa0790830:CDS
AGGAATCATCCCAATGACTC+GGG 0.615306 5_3:+1653975 None:intergenic
ATAATAGAAGCAATGACCCC+TGG 0.615476 5_3:-1653660 Msa0790830:intron
TTTATAAACAGATAATGCAC+AGG 0.617858 5_3:+1651804 None:intergenic
GTGGGTGTTGGAGTCACTCG+AGG 0.626313 5_3:-1657425 Msa0790830:CDS
TGTACAATTGATGGGTGGAG+AGG 0.626360 5_3:-1656814 Msa0790830:CDS
TGAATGAATCGATCTAACAA+TGG 0.627827 5_3:+1652166 None:intergenic
ACGTCAAGGCAACCTCCTCG+TGG 0.630526 5_3:-1652326 Msa0790830:CDS
GATGATTCCTGGTATGGCAA+AGG 0.630568 5_3:-1653962 Msa0790830:intron
GTTTACCCAAGATAGTAAGC+TGG 0.632085 5_3:+1656534 None:intergenic
TCTGCCTGGAACAAACTCAA+AGG 0.633411 5_3:-1657835 Msa0790830:CDS
AAGCTAGATGGTGATTCAAG+AGG 0.639369 5_3:-1655260 Msa0790830:CDS
CTCCACCTGGCACTGCAAGG+AGG 0.641190 5_3:-1652388 Msa0790830:CDS
CTAATGGGTGTAATGGAAGG+TGG 0.643784 5_3:-1653293 Msa0790830:CDS
GCTCTCCTAATATCTCGCAT+AGG 0.645965 5_3:+1657607 None:intergenic
CCAGCCAATAAAATGACAGT+GGG 0.646812 5_3:+1656762 None:intergenic
CTCAAATTCGAGAAGCAGAG+AGG 0.649334 5_3:-1653704 Msa0790830:CDS
TTGCTCCCAAATCCACGAGG+AGG 0.650329 5_3:+1652314 None:intergenic
TGGTTTCAGAAAGAGATATG+GGG 0.651876 5_3:-1657958 Msa0790830:intron
GATGCAACAAGAAGATGCTG+AGG 0.655115 5_3:-1654085 Msa0790830:CDS
GAGTTGCATGCTAGTTGCCG+GGG 0.661574 5_3:-1656582 Msa0790830:CDS
TGAGGAAGCACTTAAGACAG+AGG 0.664134 5_3:-1653246 Msa0790830:CDS
AATTAAGTTGGTAGGACGCG+GGG 0.665000 5_3:-1654285 Msa0790830:CDS
GCAGAAATGAGATGTACGTG+CGG 0.668500 5_3:-1652103 Msa0790830:three_prime_UTR
GAAAGAAAGCAGAGTCAAGG+AGG 0.669836 5_3:-1652364 Msa0790830:CDS
AATGTCTGATGGTTTAACAT+CGG 0.671775 5_3:+1656046 None:intergenic
TCCAGCCAATAAAATGACAG+TGG 0.677478 5_3:+1656761 None:intergenic
TATTTGCGGACTCAACGTCA+AGG 0.678247 5_3:-1652340 Msa0790830:CDS
GACATGCAACAATATGATGG+GGG 0.693124 5_3:-1652266 Msa0790830:three_prime_UTR
TGACATGCAACAATATGATG+GGG 0.701808 5_3:-1652267 Msa0790830:three_prime_UTR
GAACTTGTACAATTGATGGG+TGG 0.725839 5_3:-1656819 Msa0790830:CDS
TAGTTGTGGATGCTATGACA+GGG 0.765406 5_3:-1655770 Msa0790830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTATTTTTTAACAAAT+TGG - chr5_3:1653797-1653816 Msa0790830:intron 10.0%
!!! TAATTTAAGACTTATAATTT+GGG + chr5_3:1655050-1655069 None:intergenic 10.0%
!!! ATAATTTAAGACTTATAATT+TGG + chr5_3:1655051-1655070 None:intergenic 10.0%
!! ATAAGTCTTAAATTATAATT+AGG - chr5_3:1655055-1655074 Msa0790830:intron 10.0%
!! AAATAAAATATATAAGAGAA+AGG + chr5_3:1655664-1655683 None:intergenic 10.0%
!!! TCTTATATATTTTATTTGAT+TGG - chr5_3:1655667-1655686 Msa0790830:intron 10.0%
!!! CTTATATATTTTATTTGATT+GGG - chr5_3:1655668-1655687 Msa0790830:intron 10.0%
!! CATGTATTTAAAAAAATAAA+TGG - chr5_3:1658254-1658273 Msa0790830:five_prime_UTR 10.0%
!!! TTTTTTAATGATCATATCAT+TGG + chr5_3:1652270-1652289 None:intergenic 15.0%
!!! TTTTTAGGAAAAAGTAAAAT+TGG - chr5_3:1652744-1652763 Msa0790830:intron 15.0%
!!! TTTTAGGAAAAAGTAAAATT+GGG - chr5_3:1652745-1652764 Msa0790830:intron 15.0%
!!! ATAAACTGATTCTAAATTAA+TGG - chr5_3:1654354-1654373 Msa0790830:intron 15.0%
!!! AATCACATTTTGTAAATTAA+CGG + chr5_3:1654943-1654962 None:intergenic 15.0%
!! AAAGAGTAATAAATAGTTAA+GGG - chr5_3:1655143-1655162 Msa0790830:intron 15.0%
!! TTTATAAATAAGAATTAAGG+TGG - chr5_3:1655281-1655300 Msa0790830:CDS 15.0%
!!! TCACATTATAGTTTTTAATA+TGG + chr5_3:1655612-1655631 None:intergenic 15.0%
!! GTAATAAGTAGAAATATTTA+GGG + chr5_3:1656093-1656112 None:intergenic 15.0%
!! TGTAATAAGTAGAAATATTT+AGG + chr5_3:1656094-1656113 None:intergenic 15.0%
!! AAAAATAATTAATGTTGTCT+TGG - chr5_3:1657047-1657066 Msa0790830:intron 15.0%
!!! TAATTACATACATTTGATTT+TGG + chr5_3:1658044-1658063 None:intergenic 15.0%
!! AAATGTATGTAATTATGAAA+AGG - chr5_3:1658049-1658068 Msa0790830:intron 15.0%
!!! ATGATATTTTCAATAATTTC+TGG + chr5_3:1658237-1658256 None:intergenic 15.0%
!! TGATAGATAAGATACTAATT+TGG - chr5_3:1652019-1652038 Msa0790830:three_prime_UTR 20.0%
!! TTTAATGTAATTACATGTGT+CGG - chr5_3:1652300-1652319 Msa0790830:exon 20.0%
!!! ATTATGAGTTTTAACTGATT+TGG - chr5_3:1652453-1652472 Msa0790830:intron 20.0%
!!! AATTTTTGTATAGTTTTCGT+AGG - chr5_3:1652476-1652495 Msa0790830:intron 20.0%
!! TACATAAAACATAACACAAA+TGG + chr5_3:1652680-1652699 None:intergenic 20.0%
!!! TGATTTTGTTCTTGTTTTTT+AGG - chr5_3:1652729-1652748 Msa0790830:intron 20.0%
!! ACTAATATACATTCATTTGT+GGG + chr5_3:1653023-1653042 None:intergenic 20.0%
!!! AACCAAAAAAAAGTATTAGA+AGG + chr5_3:1653356-1653375 None:intergenic 20.0%
!!! TTTTTTAACAAATTGGATTC+AGG - chr5_3:1653804-1653823 Msa0790830:intron 20.0%
!!! CATATATTTTACTACCAAAT+TGG - chr5_3:1654393-1654412 Msa0790830:intron 20.0%
!!! CTAACTAAAATATGGTTTTT+TGG + chr5_3:1654578-1654597 None:intergenic 20.0%
!!! CAAAAAACCATATTTTAGTT+AGG - chr5_3:1654576-1654595 Msa0790830:intron 20.0%
!! ACAAAAACCTAACTAAAATA+TGG + chr5_3:1654586-1654605 None:intergenic 20.0%
!!! ATCACATTTTGTAAATTAAC+GGG + chr5_3:1654942-1654961 None:intergenic 20.0%
!!! AGAAGGATGATAATTTTTTT+TGG + chr5_3:1654982-1655001 None:intergenic 20.0%
!! ACAAAATTATCCTTCATTAA+TGG - chr5_3:1655087-1655106 Msa0790830:intron 20.0%
!! GAAAGAGTAATAAATAGTTA+AGG - chr5_3:1655142-1655161 Msa0790830:intron 20.0%
!!! TAAATAGTTAAGGGTATTAT+AGG - chr5_3:1655152-1655171 Msa0790830:intron 20.0%
!! ATGTAACATTAATGTTTCAA+TGG - chr5_3:1655177-1655196 Msa0790830:intron 20.0%
!!! GGCTTTATAAATAAGAATTA+AGG - chr5_3:1655278-1655297 Msa0790830:CDS 20.0%
!! GTATTGAAATGAAAAATTGA+AGG + chr5_3:1655416-1655435 None:intergenic 20.0%
!! TTAATATGGTTTAGAAACAT+AGG + chr5_3:1655598-1655617 None:intergenic 20.0%
!! TTATTACAGTTTCATGTATT+TGG - chr5_3:1656106-1656125 Msa0790830:intron 20.0%
!! TGCAAATATATAATCAAAAC+TGG + chr5_3:1656242-1656261 None:intergenic 20.0%
!! AATACTTATAATGTGATAGA+AGG + chr5_3:1656840-1656859 None:intergenic 20.0%
!!! AGTAAGACATATTTTTTTGA+CGG - chr5_3:1656923-1656942 Msa0790830:intron 20.0%
!! GGAAATTACATTAAGATAAT+AGG + chr5_3:1657310-1657329 None:intergenic 20.0%
!!! ATTAACTTTTTAAACAAGGA+AGG + chr5_3:1657331-1657350 None:intergenic 20.0%
!!! TCCTTGTTTAAAAAGTTAAT+TGG - chr5_3:1657331-1657350 Msa0790830:intron 20.0%
!!! TCCAATTAACTTTTTAAACA+AGG + chr5_3:1657335-1657354 None:intergenic 20.0%
!!! GAAGGAAATTATTTTATCTA+AGG + chr5_3:1657822-1657841 None:intergenic 20.0%
!! CAAAACTATAAATGAATCAA+GGG + chr5_3:1658002-1658021 None:intergenic 20.0%
!! TCAAAACTATAAATGAATCA+AGG + chr5_3:1658003-1658022 None:intergenic 20.0%
!!! TAGTTTTGAAATGCATATAT+TGG - chr5_3:1658014-1658033 Msa0790830:intron 20.0%
! GAAAGAATTTCTGTAAGAAA+GGG + chr5_3:1651939-1651958 None:intergenic 25.0%
! GTATCTTATCTATCAATGAA+TGG + chr5_3:1652014-1652033 None:intergenic 25.0%
! GATAAGATACTAATTTGGTT+TGG - chr5_3:1652024-1652043 Msa0790830:three_prime_UTR 25.0%
! TATATTCAAAACTACTGCAA+TGG - chr5_3:1652890-1652909 Msa0790830:intron 25.0%
! ATTTCCAAAAGAAATGGAAA+TGG + chr5_3:1652922-1652941 None:intergenic 25.0%
!!! ATTTCCATTTCTTTTGGAAA+TGG - chr5_3:1652921-1652940 Msa0790830:intron 25.0%
! CTAATATACATTCATTTGTG+GGG + chr5_3:1653022-1653041 None:intergenic 25.0%
! CACTAATATACATTCATTTG+TGG + chr5_3:1653024-1653043 None:intergenic 25.0%
! CACAAATGAATGTATATTAG+TGG - chr5_3:1653022-1653041 Msa0790830:intron 25.0%
! AGCAAATTATTTCAAGAAAC+AGG - chr5_3:1653307-1653326 Msa0790830:CDS 25.0%
!!! CACCTTCTAATACTTTTTTT+TGG - chr5_3:1653351-1653370 Msa0790830:intron 25.0%
! GAATATGATTCGTTTCAATA+AGG + chr5_3:1653388-1653407 None:intergenic 25.0%
! ACTTCAATGAAACAAAAATC+TGG + chr5_3:1653504-1653523 None:intergenic 25.0%
! TGACTGACTATATTTAAATG+AGG + chr5_3:1653563-1653582 None:intergenic 25.0%
! TGTCTGGATAAAAATTATGA+AGG - chr5_3:1653752-1653771 Msa0790830:intron 25.0%
!! AATTAGTTATAGCTTGTATC+AGG - chr5_3:1653911-1653930 Msa0790830:intron 25.0%
!! CACATCAATTTTCTTCTTTT+TGG + chr5_3:1654009-1654028 None:intergenic 25.0%
! CAAAAAGAAGAAAATTGATG+TGG - chr5_3:1654007-1654026 Msa0790830:CDS 25.0%
!! AAATTCTTTTATGCTCATCA+AGG - chr5_3:1654126-1654145 Msa0790830:intron 25.0%
! ATGAGTTAAAAGATGTGAAA+CGG - chr5_3:1654189-1654208 Msa0790830:CDS 25.0%
!!! TATGGTTTTTTGGTTTCTAA+AGG + chr5_3:1654568-1654587 None:intergenic 25.0%
! TATAATTATGTTCCTGATGT+TGG - chr5_3:1654605-1654624 Msa0790830:intron 25.0%
!! AAAACAGTGAAGTAGATTTT+GGG + chr5_3:1654658-1654677 None:intergenic 25.0%
!! TAAAACAGTGAAGTAGATTT+TGG + chr5_3:1654659-1654678 None:intergenic 25.0%
!!! TATTTTTGATTGAACAGCTT+TGG - chr5_3:1654677-1654696 Msa0790830:intron 25.0%
! TTATCCTTCATTAATGGTAT+AGG - chr5_3:1655093-1655112 Msa0790830:intron 25.0%
!! TTTTCCTATACCATTAATGA+AGG + chr5_3:1655100-1655119 None:intergenic 25.0%
! AGGTAAAACATCAAATTCAA+TGG + chr5_3:1655508-1655527 None:intergenic 25.0%
!! TTGATGTTTTACCTTCAAAA+TGG - chr5_3:1655514-1655533 Msa0790830:intron 25.0%
!! AAATTTTATGATACTCTCTG+TGG - chr5_3:1655545-1655564 Msa0790830:intron 25.0%
! ATAATCAAAACTGGAAAGAT+AGG + chr5_3:1656233-1656252 None:intergenic 25.0%
! TTAGTATAAAGAAACAACCA+GGG + chr5_3:1656367-1656386 None:intergenic 25.0%
! ATTAGTATAAAGAAACAACC+AGG + chr5_3:1656368-1656387 None:intergenic 25.0%
! AAATACACAACTATAATGTC+AGG - chr5_3:1656641-1656660 Msa0790830:intron 25.0%
! TATGTCTTACTCTTTAGTAA+AGG + chr5_3:1656914-1656933 None:intergenic 25.0%
! TTAATTAGAGTAGTTGAAAG+TGG - chr5_3:1656969-1656988 Msa0790830:intron 25.0%
!! ATGAAATAAAGTACTATCTC+TGG + chr5_3:1657134-1657153 None:intergenic 25.0%
! TATTAAGATTCCACAAACAT+GGG - chr5_3:1657366-1657385 Msa0790830:intron 25.0%
! TACAACAAGATTCACAATAA+TGG + chr5_3:1657531-1657550 None:intergenic 25.0%
! AGTCAATTCAAAATATTGGA+TGG + chr5_3:1657954-1657973 None:intergenic 25.0%
! CGAAAGTCAATTCAAAATAT+TGG + chr5_3:1657958-1657977 None:intergenic 25.0%
!! TTTGAAATGCATATATTGGA+TGG - chr5_3:1658018-1658037 Msa0790830:intron 25.0%
! GTATGTAATTATGAAAAGGA+TGG - chr5_3:1658053-1658072 Msa0790830:intron 25.0%
!!! CTTGTAGAGTGTTTTATTTT+AGG - chr5_3:1658154-1658173 Msa0790830:CDS 25.0%
! TTTATAAACAGATAATGCAC+AGG + chr5_3:1658206-1658225 None:intergenic 25.0%
CGAAAGAATTTCTGTAAGAA+AGG + chr5_3:1651940-1651959 None:intergenic 30.0%
TTCTTACAGAAATTCTTTCG+CGG - chr5_3:1651940-1651959 Msa0790830:three_prime_UTR 30.0%
CTTATCTATCAATGAATGGA+GGG + chr5_3:1652010-1652029 None:intergenic 30.0%
TCTTATCTATCAATGAATGG+AGG + chr5_3:1652011-1652030 None:intergenic 30.0%
!! GATACTAATTTGGTTTGGTT+TGG - chr5_3:1652029-1652048 Msa0790830:three_prime_UTR 30.0%
! TTTGGTTTCAGAAAGAGATA+TGG - chr5_3:1652047-1652066 Msa0790830:three_prime_UTR 30.0%
TTGGTTTCAGAAAGAGATAT+GGG - chr5_3:1652048-1652067 Msa0790830:three_prime_UTR 30.0%
GTCAAATTGAAGACATGTTT+GGG + chr5_3:1652338-1652357 None:intergenic 30.0%
AGTCAAATTGAAGACATGTT+TGG + chr5_3:1652339-1652358 None:intergenic 30.0%
AACATGTCTTCAATTTGACT+TGG - chr5_3:1652339-1652358 Msa0790830:CDS 30.0%
TTTGACCAAAGACAATATTG+TGG - chr5_3:1652375-1652394 Msa0790830:CDS 30.0%
ATATTGTTCACCGTATAAAG+TGG - chr5_3:1652990-1653009 Msa0790830:intron 30.0%
AGTTCCATACAAGAACAAAA+TGG - chr5_3:1653130-1653149 Msa0790830:intron 30.0%
GTTCCATACAAGAACAAAAT+GGG - chr5_3:1653131-1653150 Msa0790830:intron 30.0%
TGATGAACTTGTACAATTGA+TGG - chr5_3:1653184-1653203 Msa0790830:intron 30.0%
GATGAACTTGTACAATTGAT+GGG - chr5_3:1653185-1653204 Msa0790830:intron 30.0%
! AAAGTATTAGAAGGTGATGA+AGG + chr5_3:1653347-1653366 None:intergenic 30.0%
AATCATATTCATCTGATCTC+AGG - chr5_3:1653398-1653417 Msa0790830:intron 30.0%
ATCATATTCATCTGATCTCA+GGG - chr5_3:1653399-1653418 Msa0790830:intron 30.0%
AGACAGATCATTAAAATCAG+TGG + chr5_3:1653737-1653756 None:intergenic 30.0%
!! ACTGATTTTAATGATCTGTC+TGG - chr5_3:1653736-1653755 Msa0790830:intron 30.0%
ATGAGTCAAACAATGCTAAT+TGG + chr5_3:1653846-1653865 None:intergenic 30.0%
AATGTCTGATGGTTTAACAT+CGG + chr5_3:1653964-1653983 None:intergenic 30.0%
TGAGTTAAAAGATGTGAAAC+GGG - chr5_3:1654190-1654209 Msa0790830:CDS 30.0%
! ACTGATTCTAAATTAATGGC+TGG - chr5_3:1654358-1654377 Msa0790830:intron 30.0%
AGAGTATAATAACCAACATC+AGG + chr5_3:1654620-1654639 None:intergenic 30.0%
ACTACTTTCAATCTTGAGAT+TGG - chr5_3:1654702-1654721 Msa0790830:intron 30.0%
AATCTTGAGATTGGAATAAC+TGG - chr5_3:1654711-1654730 Msa0790830:intron 30.0%
TGTTGAAAATTCTGGTATAG+CGG + chr5_3:1654897-1654916 None:intergenic 30.0%
AAGCAAATACAAGAACAAGA+AGG + chr5_3:1654999-1655018 None:intergenic 30.0%
! GACTTATAATTTGGGACATA+GGG + chr5_3:1655042-1655061 None:intergenic 30.0%
! AGACTTATAATTTGGGACAT+AGG + chr5_3:1655043-1655062 None:intergenic 30.0%
GTCTGTCAATAGTTAGTAAA+GGG - chr5_3:1655246-1655265 Msa0790830:CDS 30.0%
TCAATAGTTAGTAAAGGGTT+AGG - chr5_3:1655251-1655270 Msa0790830:CDS 30.0%
CAATAGTTAGTAAAGGGTTA+GGG - chr5_3:1655252-1655271 Msa0790830:CDS 30.0%
AATAGTTAGTAAAGGGTTAG+GGG - chr5_3:1655253-1655272 Msa0790830:CDS 30.0%
! TGAGTAACTCCAAATTTGTT+GGG - chr5_3:1655321-1655340 Msa0790830:intron 30.0%
GTAAACTGATAGGAAACAAT+TGG + chr5_3:1655438-1655457 None:intergenic 30.0%
CTTTATGTCAGTAAACTGAT+AGG + chr5_3:1655448-1655467 None:intergenic 30.0%
ACATAAAGCTAGAAATCACA+AGG - chr5_3:1655460-1655479 Msa0790830:intron 30.0%
! TGGAGATTAAGTTGTCAAAA+CGG + chr5_3:1655488-1655507 None:intergenic 30.0%
!!! TTTGTTTTGTGCCATTTTGA+AGG + chr5_3:1655528-1655547 None:intergenic 30.0%
ATTTAGGGATAGTTCATATG+CGG + chr5_3:1656078-1656097 None:intergenic 30.0%
TTAGTCCATCAACCTTAAAA+TGG - chr5_3:1656181-1656200 Msa0790830:intron 30.0%
TAGTATAAAGAAACAACCAG+GGG + chr5_3:1656366-1656385 None:intergenic 30.0%
GCATTCATATCTGTTGAATT+TGG - chr5_3:1656392-1656411 Msa0790830:intron 30.0%
TTGTTTATTTCCAGAGGAAA+GGG - chr5_3:1656443-1656462 Msa0790830:intron 30.0%
AACTATTTCAAATGCGTGTT+CGG - chr5_3:1656682-1656701 Msa0790830:intron 30.0%
!!! TTATTTTAACCCACATCTAC+AGG - chr5_3:1657174-1657193 Msa0790830:intron 30.0%
GTATTAAGATTCCACAAACA+TGG - chr5_3:1657365-1657384 Msa0790830:intron 30.0%
AAAACATTCTAGTGAAGCTA+TGG - chr5_3:1657477-1657496 Msa0790830:CDS 30.0%
AAGCTATGGAGAAGAAATAA+AGG - chr5_3:1657491-1657510 Msa0790830:intron 30.0%
ATTGACATGCAACAATATGA+TGG - chr5_3:1657738-1657757 Msa0790830:intron 30.0%
TTGACATGCAACAATATGAT+GGG - chr5_3:1657739-1657758 Msa0790830:intron 30.0%
TGAATGAATCGATCTAACAA+TGG + chr5_3:1657844-1657863 None:intergenic 30.0%
!! TTAGTTCTAATTCTGCATAC+AGG + chr5_3:1658101-1658120 None:intergenic 30.0%
AGAAGAAGAAGAAGAAGAAG+AGG + chr5_3:1651897-1651916 None:intergenic 35.0%
TCATCTCCTATTCTTCTGAT+TGG - chr5_3:1651976-1651995 Msa0790830:three_prime_UTR 35.0%
GAGTAACCAATCAGAAGAAT+AGG + chr5_3:1651985-1652004 None:intergenic 35.0%
TGGTTTCAGAAAGAGATATG+GGG - chr5_3:1652049-1652068 Msa0790830:three_prime_UTR 35.0%
ATGTTTGGTCAGTTAACTAC+TGG - chr5_3:1652142-1652161 Msa0790830:three_prime_UTR 35.0%
! ATTACATGTGTCGGTATTGT+TGG - chr5_3:1652309-1652328 Msa0790830:CDS 35.0%
!! CTCTTTTAGAAGCTGATGTA+AGG - chr5_3:1652422-1652441 Msa0790830:intron 35.0%
TAAGTCTTCCTGTTGTAAGA+AGG - chr5_3:1652532-1652551 Msa0790830:intron 35.0%
ACCTTAACCAATTGTTGATC+GGG + chr5_3:1652615-1652634 None:intergenic 35.0%
GACCTTAACCAATTGTTGAT+CGG + chr5_3:1652616-1652635 None:intergenic 35.0%
! TCTACATTTGAAATACGCTG+TGG - chr5_3:1652780-1652799 Msa0790830:intron 35.0%
! CACTCCATTTCCATTTCTTT+TGG - chr5_3:1652915-1652934 Msa0790830:intron 35.0%
CTCTCCATTTCCAAAAGAAA+TGG + chr5_3:1652928-1652947 None:intergenic 35.0%
!! CATTTCTTTTGGAAATGGAG+AGG - chr5_3:1652926-1652945 Msa0790830:intron 35.0%
! ACACCCATTTTGTTCTTGTA+TGG + chr5_3:1653137-1653156 None:intergenic 35.0%
!! ACAAAATGGGTGTTGATTGT+TGG - chr5_3:1653144-1653163 Msa0790830:intron 35.0%
!! CAAAATGGGTGTTGATTGTT+GGG - chr5_3:1653145-1653164 Msa0790830:intron 35.0%
!! GAATTGACTTTTGCCAAATC+TGG - chr5_3:1653221-1653240 Msa0790830:intron 35.0%
! ATTTGCTAACTTTGCACACA+CGG + chr5_3:1653294-1653313 None:intergenic 35.0%
TCATATTCATCTGATCTCAG+GGG - chr5_3:1653400-1653419 Msa0790830:intron 35.0%
TATTGACCAGCTTACTATCT+TGG - chr5_3:1653467-1653486 Msa0790830:intron 35.0%
ATTGACCAGCTTACTATCTT+GGG - chr5_3:1653468-1653487 Msa0790830:intron 35.0%
ACTACAATGCACATTCTTCA+TGG + chr5_3:1653643-1653662 None:intergenic 35.0%
ATTAGAAGTGATGTGTTTCC+TGG - chr5_3:1653665-1653684 Msa0790830:CDS 35.0%
TTAGAAGTGATGTGTTTCCT+GGG - chr5_3:1653666-1653685 Msa0790830:CDS 35.0%
!! GAAATTATGCTAGCCTTGAT+AGG - chr5_3:1653694-1653713 Msa0790830:CDS 35.0%
! TAGTTATAGCTTGTATCAGG+TGG - chr5_3:1653914-1653933 Msa0790830:intron 35.0%
!!! TGCTAAACAAGGTTTTGAAG+AGG - chr5_3:1653983-1654002 Msa0790830:CDS 35.0%
ACAGATAGACAAAGCAATGA+TGG - chr5_3:1654166-1654185 Msa0790830:intron 35.0%
ACAACTAACAAGACTTCTGT+TGG + chr5_3:1654224-1654243 None:intergenic 35.0%
!! AACAGAAGTCTTGTTAGTTG+TGG - chr5_3:1654223-1654242 Msa0790830:CDS 35.0%
CAACTTAAGTATGTGGTCAA+GGG - chr5_3:1654433-1654452 Msa0790830:intron 35.0%
ATTTCTGTACGCATAAGTCA+GGG + chr5_3:1654465-1654484 None:intergenic 35.0%
AATTTCTGTACGCATAAGTC+AGG + chr5_3:1654466-1654485 None:intergenic 35.0%
!!! AGTAGATTTTGGGATGGTTT+TGG + chr5_3:1654648-1654667 None:intergenic 35.0%
GTTGAAAATTCTGGTATAGC+GGG + chr5_3:1654896-1654915 None:intergenic 35.0%
GCTCGTAATGTTGAAAATTC+TGG + chr5_3:1654905-1654924 None:intergenic 35.0%
!! ATGTGATTTCTAGTTGCATG+AGG - chr5_3:1654955-1654974 Msa0790830:intron 35.0%
ATAGGGAGTAATTGACACAA+AGG + chr5_3:1655025-1655044 None:intergenic 35.0%
! ATAATTTGAGACGCAGAGTA+TGG - chr5_3:1655216-1655235 Msa0790830:intron 35.0%
! TAATTTGAGACGCAGAGTAT+GGG - chr5_3:1655217-1655236 Msa0790830:intron 35.0%
GGTCTGTCAATAGTTAGTAA+AGG - chr5_3:1655245-1655264 Msa0790830:CDS 35.0%
AGAATTAAGGTGGAATCTGT+AGG - chr5_3:1655291-1655310 Msa0790830:CDS 35.0%
GTGAGTAACTCCAAATTTGT+TGG - chr5_3:1655320-1655339 Msa0790830:intron 35.0%
CTAACATCTCCCAACAAATT+TGG + chr5_3:1655333-1655352 None:intergenic 35.0%
!! CAAATTTGTTGGGAGATGTT+AGG - chr5_3:1655331-1655350 Msa0790830:intron 35.0%
ATCTGGAAAGCCAATTAAGT+TGG - chr5_3:1655710-1655729 Msa0790830:intron 35.0%
TTTAGGGATAGTTCATATGC+GGG + chr5_3:1656077-1656096 None:intergenic 35.0%
!! ATTTGGTGCCTTATAGCAAT+TGG - chr5_3:1656123-1656142 Msa0790830:intron 35.0%
!! TTTGGTGCCTTATAGCAATT+GGG - chr5_3:1656124-1656143 Msa0790830:intron 35.0%
!! TAAGGTTGATGGACTAAACT+TGG + chr5_3:1656178-1656197 None:intergenic 35.0%
!!! ATGCTCCATTTTAAGGTTGA+TGG + chr5_3:1656189-1656208 None:intergenic 35.0%
! ATACTCGATGCTCCATTTTA+AGG + chr5_3:1656196-1656215 None:intergenic 35.0%
AGAGAGGAATTTGGAGATTA+TGG - chr5_3:1656319-1656338 Msa0790830:intron 35.0%
! CCTCTGGAAATAAACAAGAA+AGG + chr5_3:1656440-1656459 None:intergenic 35.0%
! CCTTTCTTGTTTATTTCCAG+AGG - chr5_3:1656437-1656456 Msa0790830:intron 35.0%
CTTGTTTATTTCCAGAGGAA+AGG - chr5_3:1656442-1656461 Msa0790830:intron 35.0%
GAAATAGTTGAGCTACAAGT+TGG + chr5_3:1656671-1656690 None:intergenic 35.0%
TCCTCAAGATTACTAAGTGT+TGG + chr5_3:1656747-1656766 None:intergenic 35.0%
ACTGATGTGCATTTAATCCA+CGG - chr5_3:1657267-1657286 Msa0790830:intron 35.0%
ATTCAGAATATCTTCATCCG+TGG + chr5_3:1657287-1657306 None:intergenic 35.0%
AAAACATCCTAGTGAAGCTA+TGG - chr5_3:1657433-1657452 Msa0790830:CDS 35.0%
! AGCTTCACTAGAATGTTTTC+TGG + chr5_3:1657476-1657495 None:intergenic 35.0%
TGACATGCAACAATATGATG+GGG - chr5_3:1657740-1657759 Msa0790830:intron 35.0%
AATTTGGATCAACATGTCAC+TGG - chr5_3:1657771-1657790 Msa0790830:intron 35.0%
TGAATCGATCTAACAATGGA+AGG + chr5_3:1657840-1657859 None:intergenic 35.0%
! TATAGTAATGAGTGTTGTCC+TGG - chr5_3:1657864-1657883 Msa0790830:CDS 35.0%
! GTAGTAGTACTGAGTTGAGT+TGG - chr5_3:1651802-1651821 Msa0790830:three_prime_UTR 40.0%
AGAAGAAGAAGAAGAAGAGG+AGG + chr5_3:1651894-1651913 None:intergenic 40.0%
AAGCGTAACTGTGAGAAGAA+TGG - chr5_3:1652087-1652106 Msa0790830:three_prime_UTR 40.0%
! TTCTCCTTTGAGTTTGTTCC+AGG + chr5_3:1652179-1652198 None:intergenic 40.0%
TGGAACAAACTCAAAGGAGA+AGG - chr5_3:1652178-1652197 Msa0790830:three_prime_UTR 40.0%
!! ATTTGACTTGGTTTGTGCAG+AGG - chr5_3:1652351-1652370 Msa0790830:CDS 40.0%
AGGCTCCACAATATTGTCTT+TGG + chr5_3:1652383-1652402 None:intergenic 40.0%
TGCACAAACCTTCTTACAAC+AGG + chr5_3:1652543-1652562 None:intergenic 40.0%
AGTCAAACCCGATCAACAAT+TGG - chr5_3:1652605-1652624 Msa0790830:intron 40.0%
ACCCGATCAACAATTGGTTA+AGG - chr5_3:1652611-1652630 Msa0790830:intron 40.0%
! CATTTGAAATACGCTGTGGA+TGG - chr5_3:1652784-1652803 Msa0790830:intron 40.0%
GAACTTGTACAATTGATGGG+TGG - chr5_3:1653188-1653207 Msa0790830:intron 40.0%
!!! TGGTCCCACTGTCATTTTAT+TGG - chr5_3:1653241-1653260 Msa0790830:CDS 40.0%
CCAGCCAATAAAATGACAGT+GGG + chr5_3:1653248-1653267 None:intergenic 40.0%
TCCAGCCAATAAAATGACAG+TGG + chr5_3:1653249-1653268 None:intergenic 40.0%
!! ATTTTATTGGCTGGACTCCA+GGG - chr5_3:1653254-1653273 Msa0790830:CDS 40.0%
AGAAGGTGATGAAGGAGATT+GGG + chr5_3:1653339-1653358 None:intergenic 40.0%
TAGAAGGTGATGAAGGAGAT+TGG + chr5_3:1653340-1653359 None:intergenic 40.0%
TCGTTTCAATAAGGCGAAGA+AGG + chr5_3:1653379-1653398 None:intergenic 40.0%
GTTTACCCAAGATAGTAAGC+TGG + chr5_3:1653476-1653495 None:intergenic 40.0%
GCTTACTATCTTGGGTAAAC+AGG - chr5_3:1653476-1653495 Msa0790830:intron 40.0%
TAGCATAATTTCAGTAGCCC+AGG + chr5_3:1653686-1653705 None:intergenic 40.0%
! CCTTGTTTAGCAATGTCTGA+TGG + chr5_3:1653975-1653994 None:intergenic 40.0%
CCATCAGACATTGCTAAACA+AGG - chr5_3:1653972-1653991 Msa0790830:CDS 40.0%
TTATTGTTGACACTGCTGGT+AGG - chr5_3:1654030-1654049 Msa0790830:CDS 40.0%
TTAGTTGTGGATGCTATGAC+AGG - chr5_3:1654236-1654255 Msa0790830:CDS 40.0%
TAGTTGTGGATGCTATGACA+GGG - chr5_3:1654237-1654256 Msa0790830:CDS 40.0%
TACCAAATTGGTGTAATCCG+AGG - chr5_3:1654405-1654424 Msa0790830:intron 40.0%
ACCAAATTGGTGTAATCCGA+GGG - chr5_3:1654406-1654425 Msa0790830:intron 40.0%
! ATACTTAAGTTGCTTCCCCT+CGG + chr5_3:1654425-1654444 None:intergenic 40.0%
GCAACTTAAGTATGTGGTCA+AGG - chr5_3:1654432-1654451 Msa0790830:intron 40.0%
! AGAAATTCACCTTCTGAGAG+AGG - chr5_3:1654479-1654498 Msa0790830:intron 40.0%
TGTAAAGACCAACTCATTCG+AGG + chr5_3:1654528-1654547 None:intergenic 40.0%
!! CAGTGAAGTAGATTTTGGGA+TGG + chr5_3:1654654-1654673 None:intergenic 40.0%
!! ACCATCTAGCTTTGTCAAGA+TGG + chr5_3:1654739-1654758 None:intergenic 40.0%
AAGCTAGATGGTGATTCAAG+AGG - chr5_3:1654747-1654766 Msa0790830:intron 40.0%
GGTTAAGACGAGAACAAGTA+AGG + chr5_3:1654865-1654884 None:intergenic 40.0%
ACTAACTATTGACAGACCAG+AGG + chr5_3:1655243-1655262 None:intergenic 40.0%
AGTCCTCTGTATACAACTCT+AGG + chr5_3:1655371-1655390 None:intergenic 40.0%
TTTCCAGATACCTGTCATCA+TGG + chr5_3:1655699-1655718 None:intergenic 40.0%
!! GGAAAGCCAATTAAGTTGGT+AGG - chr5_3:1655714-1655733 Msa0790830:intron 40.0%
TGTCCTTTCATTTGTGGAGA+AGG - chr5_3:1655812-1655831 Msa0790830:CDS 40.0%
! CACTCATGATCTTCTTTTGC+AGG + chr5_3:1655949-1655968 None:intergenic 40.0%
AACTCGTACTGTTGCACAAA+TGG - chr5_3:1656000-1656019 Msa0790830:CDS 40.0%
ACTCGTACTGTTGCACAAAT+GGG - chr5_3:1656001-1656020 Msa0790830:CDS 40.0%
CTTTCCTCCCAATTGCTATA+AGG + chr5_3:1656134-1656153 None:intergenic 40.0%
ATAGCAATTGGGAGGAAAGT+AGG - chr5_3:1656135-1656154 Msa0790830:intron 40.0%
ATAATAGAAGCAATGACCCC+TGG - chr5_3:1656347-1656366 Msa0790830:intron 40.0%
! AACTCTTTTCCTCCTAACAG+GGG + chr5_3:1656493-1656512 None:intergenic 40.0%
! CAACTCTTTTCCTCCTAACA+GGG + chr5_3:1656494-1656513 None:intergenic 40.0%
AAAAGAGTTGCTCAGGATTC+AGG - chr5_3:1656504-1656523 Msa0790830:intron 40.0%
AAAGAGTTGCTCAGGATTCA+GGG - chr5_3:1656505-1656524 Msa0790830:intron 40.0%
TAATAGTGACCTTCGAAGTG+TGG - chr5_3:1656584-1656603 Msa0790830:CDS 40.0%
GTATAGAAACCACACTTCGA+AGG + chr5_3:1656596-1656615 None:intergenic 40.0%
TGTTCGGATGAAGAACCTAA+TGG - chr5_3:1656698-1656717 Msa0790830:intron 40.0%
GTTCGGATGAAGAACCTAAT+GGG - chr5_3:1656699-1656718 Msa0790830:intron 40.0%
! GAAGAACCTAATGGGTGTAA+TGG - chr5_3:1656707-1656726 Msa0790830:CDS 40.0%
! AACCTAATGGGTGTAATGGA+AGG - chr5_3:1656711-1656730 Msa0790830:CDS 40.0%
GCCAACACTTAGTAATCTTG+AGG - chr5_3:1656743-1656762 Msa0790830:CDS 40.0%
AGCACTTAAGACAGAGGAAA+AGG - chr5_3:1656767-1656786 Msa0790830:CDS 40.0%
! AAAGTGGTAGTGCAGTAGTT+AGG - chr5_3:1656985-1657004 Msa0790830:intron 40.0%
TAGTGCAGTAGTTAGGACTT+GGG - chr5_3:1656992-1657011 Msa0790830:intron 40.0%
CGAAAGATACCTGTAGATGT+GGG + chr5_3:1657186-1657205 None:intergenic 40.0%
CCACATCTACAGGTATCTTT+CGG - chr5_3:1657184-1657203 Msa0790830:intron 40.0%
CACATCTACAGGTATCTTTC+GGG - chr5_3:1657185-1657204 Msa0790830:intron 40.0%
!!! CCTTCTACACCTTTTTTAGC+CGG - chr5_3:1657410-1657429 Msa0790830:CDS 40.0%
! GGATGTTTTCCGGCTAAAAA+AGG + chr5_3:1657422-1657441 None:intergenic 40.0%
! AGCTTCACTAGGATGTTTTC+CGG + chr5_3:1657432-1657451 None:intergenic 40.0%
TTCTTCTCCATAGCTTCACT+AGG + chr5_3:1657443-1657462 None:intergenic 40.0%
TTCTGCATTCTGCCTATATC+AGG - chr5_3:1657596-1657615 Msa0790830:CDS 40.0%
AGAGTCAAGGAGGTTATTTG+CGG - chr5_3:1657653-1657672 Msa0790830:intron 40.0%
GACATGCAACAATATGATGG+GGG - chr5_3:1657741-1657760 Msa0790830:intron 40.0%
! AACAATATGATGGGGGAGTT+TGG - chr5_3:1657748-1657767 Msa0790830:intron 40.0%
CCTAAATTTCACCAAACTCC+AGG + chr5_3:1657885-1657904 None:intergenic 40.0%
! CCTGGAGTTTGGTGAAATTT+AGG - chr5_3:1657882-1657901 Msa0790830:CDS 40.0%
!! CTGAGTTGAGTTGGTGAAGA+TGG - chr5_3:1651811-1651830 Msa0790830:three_prime_UTR 45.0%
AAGGTTCGATGATGAGAGAG+AGG + chr5_3:1651869-1651888 None:intergenic 45.0%
AGAAGAAGAAGAGGAGGAGA+AGG + chr5_3:1651888-1651907 None:intergenic 45.0%
CAGAAGAATAGGAGATGACG+TGG + chr5_3:1651974-1651993 None:intergenic 45.0%
GGATATGATTCGTCCAGTTG+TGG - chr5_3:1652108-1652127 Msa0790830:three_prime_UTR 45.0%
TCTGCCTGGAACAAACTCAA+AGG - chr5_3:1652172-1652191 Msa0790830:three_prime_UTR 45.0%
TGGAGCCTATGCGAGATATT+AGG - chr5_3:1652395-1652414 Msa0790830:intron 45.0%
GCTCTCCTAATATCTCGCAT+AGG + chr5_3:1652403-1652422 None:intergenic 45.0%
TGCATGCATGTTGTGTTTGC+AGG - chr5_3:1652509-1652528 Msa0790830:intron 45.0%
TGTGCAATCTGTTACCGATC+AGG - chr5_3:1652557-1652576 Msa0790830:intron 45.0%
GAGAGGATCTCAACTCATTG+TGG - chr5_3:1652943-1652962 Msa0790830:intron 45.0%
GGGGACTTGTCCACTTTATA+CGG + chr5_3:1653003-1653022 None:intergenic 45.0%
! TGTACAATTGATGGGTGGAG+AGG - chr5_3:1653193-1653212 Msa0790830:intron 45.0%
AATGACAGTGGGACCAGATT+TGG + chr5_3:1653237-1653256 None:intergenic 45.0%
!!! CCCACTGTCATTTTATTGGC+TGG - chr5_3:1653245-1653264 Msa0790830:CDS 45.0%
!! CATTTTATTGGCTGGACTCC+AGG - chr5_3:1653253-1653272 Msa0790830:CDS 45.0%
AAGAGTTGCATGCTAGTTGC+CGG - chr5_3:1653423-1653442 Msa0790830:intron 45.0%
AGCAGGTCTATAAACATCCC+CGG + chr5_3:1653445-1653464 None:intergenic 45.0%
TGCTAAAGCAGCACCTATCA+AGG + chr5_3:1653710-1653729 None:intergenic 45.0%
CGGTACCTGCTGTATATACA+GGG + chr5_3:1653944-1653963 None:intergenic 45.0%
TCGGTACCTGCTGTATATAC+AGG + chr5_3:1653945-1653964 None:intergenic 45.0%
GTGGTTATTGTTGACACTGC+TGG - chr5_3:1654026-1654045 Msa0790830:CDS 45.0%
CCAAATTGGTGTAATCCGAG+GGG - chr5_3:1654407-1654426 Msa0790830:intron 45.0%
GGGGAAGCAACTTAAGTATG+TGG - chr5_3:1654426-1654445 Msa0790830:intron 45.0%
GCCATCTTGACAAAGCTAGA+TGG - chr5_3:1654735-1654754 Msa0790830:intron 45.0%
CTAGATGGTGATTCAAGAGG+TGG - chr5_3:1654750-1654769 Msa0790830:intron 45.0%
!! AGCAGCTTTGAGTGTCAAAG+AGG - chr5_3:1654773-1654792 Msa0790830:intron 45.0%
!! CTGGTATAGCGGGTAACTAT+TGG + chr5_3:1654886-1654905 None:intergenic 45.0%
AGTTAGTAAAGGGTTAGGGG+TGG - chr5_3:1655256-1655275 Msa0790830:CDS 45.0%
GTTAGTAAAGGGTTAGGGGT+GGG - chr5_3:1655257-1655276 Msa0790830:CDS 45.0%
TTGGGAGATGTTAGGAGCTT+TGG - chr5_3:1655339-1655358 Msa0790830:intron 45.0%
CAGCCTAGAGTTGTATACAG+AGG - chr5_3:1655365-1655384 Msa0790830:intron 45.0%
TTGGGTAGTTCCATGATGAC+AGG - chr5_3:1655686-1655705 Msa0790830:intron 45.0%
GTTCCATGATGACAGGTATC+TGG - chr5_3:1655693-1655712 Msa0790830:intron 45.0%
!! CCAATTAAGTTGGTAGGACG+CGG - chr5_3:1655720-1655739 Msa0790830:intron 45.0%
!! CAATTAAGTTGGTAGGACGC+GGG - chr5_3:1655721-1655740 Msa0790830:intron 45.0%
GGGAGATGTCCTTTCATTTG+TGG - chr5_3:1655806-1655825 Msa0790830:CDS 45.0%
GTGCCTTCTCCACAAATGAA+AGG + chr5_3:1655818-1655837 None:intergenic 45.0%
GATGCAACAAGAAGATGCTG+AGG - chr5_3:1655922-1655941 Msa0790830:intron 45.0%
AGGAATCATCCCAATGACTC+GGG + chr5_3:1656035-1656054 None:intergenic 45.0%
CAGGAATCATCCCAATGACT+CGG + chr5_3:1656036-1656055 None:intergenic 45.0%
CATTGGGATGATTCCTGGTA+TGG - chr5_3:1656039-1656058 Msa0790830:CDS 45.0%
GATGATTCCTGGTATGGCAA+AGG - chr5_3:1656045-1656064 Msa0790830:CDS 45.0%
TTCCTGGTATGGCAAAGGTA+TGG - chr5_3:1656050-1656069 Msa0790830:CDS 45.0%
CATCTCATCTGCATGCTTAC+AGG - chr5_3:1656271-1656290 Msa0790830:intron 45.0%
TCTGCTTCTCGAATTTGAGC+AGG + chr5_3:1656302-1656321 None:intergenic 45.0%
CTCAAATTCGAGAAGCAGAG+AGG - chr5_3:1656303-1656322 Msa0790830:intron 45.0%
TCGAGAAGCAGAGAGGAATT+TGG - chr5_3:1656310-1656329 Msa0790830:intron 45.0%
AAGGGAAAAGCCAGAACTGT+TGG - chr5_3:1656461-1656480 Msa0790830:intron 45.0%
! GCAACTCTTTTCCTCCTAAC+AGG + chr5_3:1656495-1656514 None:intergenic 45.0%
TAGGAGGAAAAGAGTTGCTC+AGG - chr5_3:1656497-1656516 Msa0790830:intron 45.0%
CACCTTCCATTACACCCATT+AGG + chr5_3:1656716-1656735 None:intergenic 45.0%
! CTAATGGGTGTAATGGAAGG+TGG - chr5_3:1656714-1656733 Msa0790830:CDS 45.0%
!! TGAGGAAGCACTTAAGACAG+AGG - chr5_3:1656761-1656780 Msa0790830:CDS 45.0%
GTAGTGCAGTAGTTAGGACT+TGG - chr5_3:1656991-1657010 Msa0790830:intron 45.0%
CCGAAAGATACCTGTAGATG+TGG + chr5_3:1657187-1657206 None:intergenic 45.0%
AGATTCCACAAACATGGGTG+TGG - chr5_3:1657371-1657390 Msa0790830:intron 45.0%
TCAAACCACACCCATGTTTG+TGG + chr5_3:1657379-1657398 None:intergenic 45.0%
! CCGGCTAAAAAAGGTGTAGA+AGG + chr5_3:1657413-1657432 None:intergenic 45.0%
GGAGAAAGAAAGCAGAGTCA+AGG - chr5_3:1657640-1657659 Msa0790830:intron 45.0%
GAAAGAAAGCAGAGTCAAGG+AGG - chr5_3:1657643-1657662 Msa0790830:intron 45.0%
TATTTGCGGACTCAACGTCA+AGG - chr5_3:1657667-1657686 Msa0790830:intron 45.0%
! TTTTTGCTCCCAAATCCACG+AGG + chr5_3:1657699-1657718 None:intergenic 45.0%
! TGATGGGGGAGTTTGGAATT+TGG - chr5_3:1657755-1657774 Msa0790830:intron 45.0%
! ATGAGTGTTGTCCTGGAGTT+TGG - chr5_3:1657871-1657890 Msa0790830:CDS 45.0%
GCAGAAATGAGATGTACGTG+CGG - chr5_3:1657904-1657923 Msa0790830:CDS 45.0%
CAGAAATGAGATGTACGTGC+GGG - chr5_3:1657905-1657924 Msa0790830:CDS 45.0%
AAGAGACAGACAGATGATGC+AGG + chr5_3:1658125-1658144 None:intergenic 45.0%
CATCTGTCTGTCTCTTGAAC+AGG - chr5_3:1658129-1658148 Msa0790830:CDS 45.0%
TGATTCGTCCAGTTGTGGTC+AGG - chr5_3:1652113-1652132 Msa0790830:three_prime_UTR 50.0%
GATTCGTCCAGTTGTGGTCA+GGG - chr5_3:1652114-1652133 Msa0790830:three_prime_UTR 50.0%
ATTTCAGCCCTGACCACAAC+TGG + chr5_3:1652124-1652143 None:intergenic 50.0%
GTGGTCAGGGCTGAAATGTT+TGG - chr5_3:1652127-1652146 Msa0790830:three_prime_UTR 50.0%
!! CTACTGGTCTTGAATCTGCC+TGG - chr5_3:1652158-1652177 Msa0790830:three_prime_UTR 50.0%
TCCACTCCACACTACTCACA+CGG - chr5_3:1652239-1652258 Msa0790830:three_prime_UTR 50.0%
ATCTGTTACCGATCAGGCTG+TGG - chr5_3:1652563-1652582 Msa0790830:intron 50.0%
TCTGTTACCGATCAGGCTGT+GGG - chr5_3:1652564-1652583 Msa0790830:intron 50.0%
! ATTGATGGGTGGAGAGGTCT+CGG - chr5_3:1653199-1653218 Msa0790830:intron 50.0%
AGAGTTGCATGCTAGTTGCC+GGG - chr5_3:1653424-1653443 Msa0790830:intron 50.0%
GTAAGCTGGTCAATAGCAGC+AGG + chr5_3:1653462-1653481 None:intergenic 50.0%
GACGTCCCTGTATATACAGC+AGG - chr5_3:1653936-1653955 Msa0790830:intron 50.0%
CCCCTCGGATTACACCAATT+TGG + chr5_3:1654410-1654429 None:intergenic 50.0%
CAAGAGTTGCCTCTCTCAGA+AGG + chr5_3:1654491-1654510 None:intergenic 50.0%
CTCCAGATCCTCGAATGAGT+TGG - chr5_3:1654517-1654536 Msa0790830:intron 50.0%
GACCAACTCATTCGAGGATC+TGG + chr5_3:1654522-1654541 None:intergenic 50.0%
CCGCGTCCTACCAACTTAAT+TGG + chr5_3:1655723-1655742 None:intergenic 50.0%
CTAGTATTCGCCCAGCCATT+CGG + chr5_3:1655782-1655801 None:intergenic 50.0%
GCTGGGCGAATACTAGGAAT+GGG - chr5_3:1655786-1655805 Msa0790830:CDS 50.0%
GTTCTGTGTCCCGAGTCATT+GGG - chr5_3:1656023-1656042 Msa0790830:CDS 50.0%
CGAGTCATTGGGATGATTCC+TGG - chr5_3:1656034-1656053 Msa0790830:CDS 50.0%
GTCCATACCTTTGCCATACC+AGG + chr5_3:1656055-1656074 None:intergenic 50.0%
GGTGCCTTATAGCAATTGGG+AGG - chr5_3:1656127-1656146 Msa0790830:intron 50.0%
!!! TCTGGCTTTTCCCTTTCCTC+TGG + chr5_3:1656456-1656475 None:intergenic 50.0%
TGTTGGCAGAATCCCCTGTT+AGG - chr5_3:1656478-1656497 Msa0790830:intron 50.0%
TTCAGGGAAAACAGAGCAGC+AGG - chr5_3:1656521-1656540 Msa0790830:intron 50.0%
TGCAGTAGTTAGGACTTGGG+AGG - chr5_3:1656995-1657014 Msa0790830:intron 50.0%
TCTACAGGTATCTTTCGGGC+AGG - chr5_3:1657189-1657208 Msa0790830:intron 50.0%
!! AGAGAGGCGTCGACAAATGG+CGG + chr5_3:1651853-1651872 None:intergenic 55.0%
!! GAGAGAGAGGCGTCGACAAA+TGG + chr5_3:1651856-1651875 None:intergenic 55.0%
TCCGTGTGAGTAGTGTGGAG+TGG + chr5_3:1652243-1652262 None:intergenic 55.0%
GTGTCTCCGTGTGAGTAGTG+TGG + chr5_3:1652248-1652267 None:intergenic 55.0%
TCCAACACCCACAGCCTGAT+CGG + chr5_3:1652574-1652593 None:intergenic 55.0%
GAGTTGCATGCTAGTTGCCG+GGG - chr5_3:1653425-1653444 Msa0790830:intron 55.0%
ATGACAGGGCAAGAAGCAGC+AGG - chr5_3:1654251-1654270 Msa0790830:CDS 55.0%
ACCTTTCTACCCCGACCGAA+TGG - chr5_3:1655764-1655783 Msa0790830:CDS 55.0%
TATTCGCCCAGCCATTCGGT+CGG + chr5_3:1655778-1655797 None:intergenic 55.0%
CGAATGGCTGGGCGAATACT+AGG - chr5_3:1655780-1655799 Msa0790830:CDS 55.0%
GGCTGGGCGAATACTAGGAA+TGG - chr5_3:1655785-1655804 Msa0790830:CDS 55.0%
GGTTCTGTGTCCCGAGTCAT+TGG - chr5_3:1656022-1656041 Msa0790830:CDS 55.0%
GGGGATTCTGCCAACAGTTC+TGG + chr5_3:1656474-1656493 None:intergenic 55.0%
TGGCAGAATCCCCTGTTAGG+AGG - chr5_3:1656481-1656500 Msa0790830:intron 55.0%
TGCCTATATCAGGCTCCACC+TGG - chr5_3:1657606-1657625 Msa0790830:CDS 55.0%
TGCCAGGTGGAGCCTGATAT+AGG + chr5_3:1657611-1657630 None:intergenic 55.0%
TTTCTCCTCCTTGCAGTGCC+AGG + chr5_3:1657627-1657646 None:intergenic 55.0%
AGGCAACCTCCTCGTGGATT+TGG - chr5_3:1657687-1657706 Msa0790830:intron 55.0%
GGCAACCTCCTCGTGGATTT+GGG - chr5_3:1657688-1657707 Msa0790830:intron 55.0%
TTGCTCCCAAATCCACGAGG+AGG + chr5_3:1657696-1657715 None:intergenic 55.0%
!! GAGAGGCGTCGACAAATGGC+GGG + chr5_3:1651852-1651871 None:intergenic 60.0%
ACCGATCAGGCTGTGGGTGT+TGG - chr5_3:1652570-1652589 Msa0790830:intron 60.0%
!! GTGGGTGTTGGAGTCACTCG+AGG - chr5_3:1652582-1652601 Msa0790830:intron 60.0%
TTGGCTGGACTCCAGGGAGT+TGG - chr5_3:1653260-1653279 Msa0790830:CDS 60.0%
TGGCTGGACTCCAGGGAGTT+GGG - chr5_3:1653261-1653280 Msa0790830:CDS 60.0%
CGGTTGTCTTCCCAACTCCC+TGG + chr5_3:1653274-1653293 None:intergenic 60.0%
TGACACTGCTGGTAGGCTGC+AGG - chr5_3:1654037-1654056 Msa0790830:CDS 60.0%
AGACGCAGAGTATGGGCCTC+TGG - chr5_3:1655224-1655243 Msa0790830:intron 60.0%
GCCATTCGGTCGGGGTAGAA+AGG + chr5_3:1655768-1655787 None:intergenic 60.0%
TTCTACCCCGACCGAATGGC+TGG - chr5_3:1655768-1655787 Msa0790830:CDS 60.0%
TCTACCCCGACCGAATGGCT+GGG - chr5_3:1655769-1655788 Msa0790830:CDS 60.0%
ATTCGCCCAGCCATTCGGTC+GGG + chr5_3:1655777-1655796 None:intergenic 60.0%
ACGTCAAGGCAACCTCCTCG+TGG - chr5_3:1657681-1657700 Msa0790830:intron 60.0%
TTCGCCCAGCCATTCGGTCG+GGG + chr5_3:1655776-1655795 None:intergenic 65.0%
AGGCTCCACCTGGCACTGCA+AGG - chr5_3:1657616-1657635 Msa0790830:CDS 65.0%
CTCCACCTGGCACTGCAAGG+AGG - chr5_3:1657619-1657638 Msa0790830:CDS 65.0%
CTCCTCCTTGCAGTGCCAGG+TGG + chr5_3:1657624-1657643 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1651745 1658284 1651745 ID=Msa0790830;Name=Msa0790830
chr5_3 mRNA 1651745 1658284 1651745 ID=Msa0790830-mRNA-1;Parent=Msa0790830;Name=Msa0790830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=85|1|1|1|1|1|15|562|559
chr5_3 exon 1651745 1652411 1651745 ID=Msa0790830-mRNA-1:exon:636;Parent=Msa0790830-mRNA-1
chr5_3 exon 1653241 1653366 1653241 ID=Msa0790830-mRNA-1:exon:635;Parent=Msa0790830-mRNA-1
chr5_3 exon 1653487 1653572 1653487 ID=Msa0790830-mRNA-1:exon:634;Parent=Msa0790830-mRNA-1
chr5_3 exon 1653661 1653736 1653661 ID=Msa0790830-mRNA-1:exon:633;Parent=Msa0790830-mRNA-1
chr5_3 exon 1653963 1654106 1653963 ID=Msa0790830-mRNA-1:exon:632;Parent=Msa0790830-mRNA-1
chr5_3 exon 1654184 1654321 1654184 ID=Msa0790830-mRNA-1:exon:631;Parent=Msa0790830-mRNA-1
chr5_3 exon 1655235 1655335 1655235 ID=Msa0790830-mRNA-1:exon:630;Parent=Msa0790830-mRNA-1
chr5_3 exon 1655757 1655859 1655757 ID=Msa0790830-mRNA-1:exon:629;Parent=Msa0790830-mRNA-1
chr5_3 exon 1655971 1656096 1655971 ID=Msa0790830-mRNA-1:exon:628;Parent=Msa0790830-mRNA-1
chr5_3 exon 1656532 1656609 1656532 ID=Msa0790830-mRNA-1:exon:627;Parent=Msa0790830-mRNA-1
chr5_3 exon 1656701 1656853 1656701 ID=Msa0790830-mRNA-1:exon:626;Parent=Msa0790830-mRNA-1
chr5_3 exon 1657397 1657498 1657397 ID=Msa0790830-mRNA-1:exon:625;Parent=Msa0790830-mRNA-1
chr5_3 exon 1657591 1657658 1657591 ID=Msa0790830-mRNA-1:exon:624;Parent=Msa0790830-mRNA-1
chr5_3 exon 1657830 1657971 1657830 ID=Msa0790830-mRNA-1:exon:623;Parent=Msa0790830-mRNA-1
chr5_3 exon 1658068 1658284 1658068 ID=Msa0790830-mRNA-1:exon:622;Parent=Msa0790830-mRNA-1
chr5_3 five_prime_UTR 1658200 1658284 1658200 ID=Msa0790830-mRNA-1:five_prime_utr;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1658068 1658199 1658068 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1657830 1657971 1657830 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1657591 1657658 1657591 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1657397 1657498 1657397 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1656701 1656853 1656701 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1656532 1656609 1656532 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1655971 1656096 1655971 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1655757 1655859 1655757 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1655235 1655335 1655235 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1654184 1654321 1654184 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1653963 1654106 1653963 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1653661 1653736 1653661 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1653487 1653572 1653487 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1653241 1653366 1653241 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 CDS 1652307 1652411 1652307 ID=Msa0790830-mRNA-1:cds;Parent=Msa0790830-mRNA-1
chr5_3 three_prime_UTR 1651745 1652306 1651745 ID=Msa0790830-mRNA-1:three_prime_utr;Parent=Msa0790830-mRNA-1
Gene Sequence

>Msa0790830

ATGGAAGCAGTACTAGCGTCCCGCCATTTGTCGACGCCTCTCTCTCATCATCGAACCTTCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCGAACAAGCTTTGCTCTTCCCTTTCTTACAGAAATTCTTTCGCGAAAGAGATATGGGGTTTTGTTCAGTCGAAAAGCGTAACTGTGAGAAGAATGGATATGATTCGTCCAGTTGTGGTCAGGGCTGAAATGTTTGGTCAGTTAACTACTGGTCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACCAAAGACAATATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACCGATCAGGCTGTGGGTGTTGGAGTCACTCGAGGAGTCAAACCCGATCAACAATTGGTTAAGATTGTTCATGATGAACTTGTACAATTGATGGGTGGAGAGGTCTCGGAATTGACTTTTGCCAAATCTGGTCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAATTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTATAGACCTGCTGCTATTGACCAGCTTACTATCTTGGGTAAACAGGTGGACGTCCCTGTATATACAGCAGGTACCGATGTTAAACCATCAGACATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAGTTAAAAGATGTGAAACGGGTACTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGTTGGTAGGACGCGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCCGACCGAATGGCTGGGCGAATACTAGGAATGGGAGATGTCCTTTCATTTGTGGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAGGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCACAAATGGGTTCTGTGTCCCGAGTCATTGGGATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAGGAATTTGGAGATTATGGAAGTGATAATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTGTTAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAACCTAATGGGTGTAATGGAAGGTGGTTCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAGACAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAAAGCAGAGTCAAGGAGGTTATTTGCGGACTCAACGTCAAGGCAACCTCCTCGTGGATTTGGGAGCAAAAACTAA

Protein sequence

>Msa0790830

MEAVLASRHLSTPLSHHRTFSSSSSSSSSSNKLCSSLSYRNSFAKEIWGFVQSKSVTVRRMDMIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKAESRRLFADSTSRQPPRGFGSKN*