Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296710 | XP_024626459.1 | 78.736 | 174 | 17 | 1 | 1 | 154 | 1 | 174 | 3.46e-90 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296710 | A0A396K1J8 | 78.736 | 174 | 17 | 1 | 1 | 154 | 1 | 174 | 1.65e-90 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197660 | Msa0296710 | 0.806923 | 6.496256e-50 | -8.615850e-47 |
| Msa0239800 | Msa0296710 | 0.801500 | 8.745314e-49 | -8.615850e-47 |
| Msa0279790 | Msa0296710 | 0.810250 | 1.265767e-50 | -8.615850e-47 |
| Msa0296710 | Msa0317510 | 0.800615 | 1.326597e-48 | -8.615850e-47 |
| Msa0296710 | Msa0524890 | -0.800453 | 1.430919e-48 | -8.615850e-47 |
| Msa0296710 | Msa0656530 | 0.840162 | 1.026468e-57 | -8.615850e-47 |
| Msa0296710 | Msa0756630 | -0.801489 | 8.789197e-49 | -8.615850e-47 |
| Msa0296710 | Msa0760130 | 0.800133 | 1.662957e-48 | -8.615850e-47 |
| Msa0296710 | Msa0828940 | 0.816338 | 5.823137e-52 | -8.615850e-47 |
| Msa0296710 | Msa0843640 | 0.836750 | 7.792396e-57 | -8.615850e-47 |
| Msa0296710 | Msa0926890 | 0.802816 | 4.688985e-49 | -8.615850e-47 |
| Msa0296710 | Msa0953120 | 0.820813 | 5.623900e-53 | -8.615850e-47 |
| Msa0296710 | Msa1000860 | 0.814574 | 1.437428e-51 | -8.615850e-47 |
| Msa0296710 | Msa1000940 | 0.804823 | 1.794970e-49 | -8.615850e-47 |
| Msa0296710 | Msa1181550 | 0.803844 | 2.871989e-49 | -8.615850e-47 |
| Msa0296710 | Msa1233890 | 0.801172 | 1.020620e-48 | -8.615850e-47 |
| Msa0296710 | Msa1238930 | 0.835156 | 1.977072e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296710 | MtrunA17_Chr1g0206371 | 78.736 | 174 | 17 | 1 | 1 | 154 | 1 | 174 | 3.18e-94 | 278 |
| Msa0296710 | MtrunA17_Chr8g0380341 | 39.286 | 140 | 65 | 2 | 35 | 154 | 458 | 597 | 2.74e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATTTATTGACATTAAA+AGG | 0.152655 | 2_3:+50154131 | None:intergenic |
| TCAAATCTCTTTGAATTTCT+TGG | 0.155494 | 2_3:-50154917 | Msa0296710:five_prime_UTR |
| GTGTTAAGAAGGATAATTTA+TGG | 0.220795 | 2_3:-50151134 | Msa0296710:three_prime_UTR |
| TCTTCTTCACTTAAATCTTC+TGG | 0.269736 | 2_3:+50153834 | None:intergenic |
| ATATTGTTATTTGAAGAATT+TGG | 0.295667 | 2_3:+50154473 | None:intergenic |
| ATTTACAGGAAATTAGTAAA+AGG | 0.297837 | 2_3:-50153715 | Msa0296710:intron |
| CTCCAAACATATACCCATTA+CGG | 0.330983 | 2_3:-50155024 | Msa0296710:five_prime_UTR |
| TGTTATTCCGACAGATAAAA+TGG | 0.332881 | 2_3:-50154219 | Msa0296710:CDS |
| CTATCTCATTTGCCTTGTAT+TGG | 0.337689 | 2_3:+50153871 | None:intergenic |
| AAGATTTAAGTGAAGAAGAT+TGG | 0.343547 | 2_3:-50153830 | Msa0296710:CDS |
| GTTGGAAAAGGAAGAACTAT+TGG | 0.345880 | 2_3:-50154293 | Msa0296710:CDS |
| TTTACTTATGAAACCGTAAT+GGG | 0.362382 | 2_3:+50155011 | None:intergenic |
| TGCATCTCTGAATCATGATC+TGG | 0.371538 | 2_3:+50154500 | None:intergenic |
| TTTGGAGTAAGAGAAGATAA+TGG | 0.384574 | 2_3:+50155040 | None:intergenic |
| AAGGCAACTAGGAGAAAATA+TGG | 0.390316 | 2_3:-50153024 | Msa0296710:CDS |
| AGAAATTCAAAGAGATTTGA+AGG | 0.403978 | 2_3:+50154920 | None:intergenic |
| AACCGTAATGGGTATATGTT+TGG | 0.404173 | 2_3:+50155022 | None:intergenic |
| AAAATGGTAGGTGTTGTATC+AGG | 0.427108 | 2_3:-50154203 | Msa0296710:CDS |
| TCTCGTTACCTCCATTGTGC+AGG | 0.435169 | 2_3:+50154978 | None:intergenic |
| CAAGGCAAATGAGATAGCTT+TGG | 0.443385 | 2_3:-50153865 | Msa0296710:CDS |
| TTGAAATTGCAGGTCAAGTA+AGG | 0.461734 | 2_3:-50151314 | Msa0296710:intron |
| GAATTGATATTGTTTCTAGC+TGG | 0.472059 | 2_3:-50151239 | Msa0296710:exon |
| TTGGAGTAAGAGAAGATAAT+GGG | 0.479906 | 2_3:+50155041 | None:intergenic |
| TGAAGAAGATTGGAAGTACT+TGG | 0.484679 | 2_3:-50153820 | Msa0296710:CDS |
| TTTGCAAGAACAATTAGAAA+AGG | 0.490497 | 2_3:-50153156 | Msa0296710:CDS |
| GCATCTCTGAATCATGATCT+GGG | 0.494375 | 2_3:+50154501 | None:intergenic |
| GAAGAGAGTCAAAGGCAACT+AGG | 0.523426 | 2_3:-50153035 | Msa0296710:CDS |
| CTCGTTACCTCCATTGTGCA+GGG | 0.526569 | 2_3:+50154979 | None:intergenic |
| CAAAATTTGAAGAGAGTCAA+AGG | 0.540392 | 2_3:-50153043 | Msa0296710:CDS |
| TAAACACTTTAGCCAATACA+AGG | 0.560374 | 2_3:-50153883 | Msa0296710:CDS |
| CAAGTTATTAATCATAGATG+TGG | 0.560799 | 2_3:-50153671 | Msa0296710:CDS |
| CATCTCTGAATCATGATCTG+GGG | 0.566535 | 2_3:+50154502 | None:intergenic |
| GAGATACAGAGCAACGCTAA+AGG | 0.566636 | 2_3:-50154957 | Msa0296710:five_prime_UTR |
| AAACATAACAAATAAAATTG+TGG | 0.575775 | 2_3:+50151214 | None:intergenic |
| AAACATGAGGGAAGAAATGA+CGG | 0.577928 | 2_3:-50153066 | Msa0296710:CDS |
| AATATAAGTCAACATCAAGA+AGG | 0.597106 | 2_3:-50154455 | Msa0296710:intron |
| ATCTCTGAATCATGATCTGG+GGG | 0.608835 | 2_3:+50154503 | None:intergenic |
| AAATATGGAGAAACAAGTTG+AGG | 0.626260 | 2_3:-50153009 | Msa0296710:CDS |
| ATTCCGACAGATAAAATGGT+AGG | 0.630357 | 2_3:-50154215 | Msa0296710:CDS |
| TAAACAACCCTGCACAATGG+AGG | 0.641416 | 2_3:-50154986 | Msa0296710:five_prime_UTR |
| AAGTAAACAACCCTGCACAA+TGG | 0.646363 | 2_3:-50154989 | Msa0296710:five_prime_UTR |
| TTATTAATCATAGATGTGGA+AGG | 0.653917 | 2_3:-50153667 | Msa0296710:CDS |
| TCAAGCTGTTAGCTATGACG+CGG | 0.706731 | 2_3:-50153636 | Msa0296710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTAATATTTTTATA+GGG | - | chr2_3:50153328-50153347 | Msa0296710:intron | 0.0% |
| !! | AAATTAACATATTAGAATAA+TGG | + | chr2_3:50154624-50154643 | None:intergenic | 10.0% |
| !! | AAAAAAACTAATAATCATAA+TGG | + | chr2_3:50155014-50155033 | None:intergenic | 10.0% |
| !!! | ATATTGTTATTTGAAGAATT+TGG | + | chr2_3:50151698-50151717 | None:intergenic | 15.0% |
| !! | AAGCAATCAATTAAATAAAA+AGG | + | chr2_3:50152128-50152147 | None:intergenic | 15.0% |
| !! | TGATAAATATACCAAAAAAA+GGG | + | chr2_3:50152580-50152599 | None:intergenic | 15.0% |
| !! | ATGATAAATATACCAAAAAA+AGG | + | chr2_3:50152581-50152600 | None:intergenic | 15.0% |
| !! | TATGTTTAACAAATCAAAAA+AGG | + | chr2_3:50152773-50152792 | None:intergenic | 15.0% |
| !!! | TTTACATTTTTAAATAGATG+AGG | - | chr2_3:50152834-50152853 | Msa0296710:intron | 15.0% |
| !!! | TTACATTTTTAAATAGATGA+GGG | - | chr2_3:50152835-50152854 | Msa0296710:intron | 15.0% |
| !!! | TTAATATTTTTATAGGGTAT+TGG | - | chr2_3:50153334-50153353 | Msa0296710:intron | 15.0% |
| !!! | GCTGTTTTTAAAATAAAAAA+TGG | - | chr2_3:50153564-50153583 | Msa0296710:intron | 15.0% |
| !!! | GTTTTTAAAATAAAAAATGG+AGG | - | chr2_3:50153567-50153586 | Msa0296710:intron | 15.0% |
| !! | AGAAGAAAAAATATTATGAA+AGG | - | chr2_3:50154235-50154254 | Msa0296710:CDS | 15.0% |
| !!! | AATTAATATTTTGAATAGGA+GGG | + | chr2_3:50154826-50154845 | None:intergenic | 15.0% |
| !!! | ATCGAATTAATATTTTGAAT+AGG | + | chr2_3:50154830-50154849 | None:intergenic | 15.0% |
| !! | AAACATAACAAATAAAATTG+TGG | + | chr2_3:50154957-50154976 | None:intergenic | 15.0% |
| !!! | CATGAAATCAAACTATATTT+TGG | + | chr2_3:50151354-50151373 | None:intergenic | 20.0% |
| !!! | AATTTTCCTTTGATCAATTT+TGG | - | chr2_3:50151391-50151410 | Msa0296710:intron | 20.0% |
| !!! | ATTTTACCAAAATTGATCAA+AGG | + | chr2_3:50151400-50151419 | None:intergenic | 20.0% |
| !!! | TCTCTTCACATTTTTTTTTT+CGG | - | chr2_3:50151817-50151836 | Msa0296710:intron | 20.0% |
| !! | ATTTACAGGAAATTAGTAAA+AGG | - | chr2_3:50152453-50152472 | Msa0296710:intron | 20.0% |
| !! | TGGTTATTTATATACTTACT+TGG | + | chr2_3:50153222-50153241 | None:intergenic | 20.0% |
| !! | AGTATATAAATAACCATAGT+TGG | - | chr2_3:50153226-50153245 | Msa0296710:intron | 20.0% |
| !!! | TTATATTTTTGTACCAACTA+TGG | + | chr2_3:50153242-50153261 | None:intergenic | 20.0% |
| !!! | TAATTTTTTCTTGACTTTAG+TGG | - | chr2_3:50153437-50153456 | Msa0296710:intron | 20.0% |
| !! | AAAATAAAAAATGGAGGATA+AGG | - | chr2_3:50153573-50153592 | Msa0296710:intron | 20.0% |
| !! | AAATAAAAAATGGAGGATAA+GGG | - | chr2_3:50153574-50153593 | Msa0296710:intron | 20.0% |
| !! | GAGTTTATAAGATAATGAAT+AGG | - | chr2_3:50153688-50153707 | Msa0296710:CDS | 20.0% |
| !! | TTTATAAGATAATGAATAGG+AGG | - | chr2_3:50153691-50153710 | Msa0296710:CDS | 20.0% |
| !! | TTATAAGATAATGAATAGGA+GGG | - | chr2_3:50153692-50153711 | Msa0296710:CDS | 20.0% |
| !! | TGGATTAAAAAATCAAATGA+AGG | - | chr2_3:50154091-50154110 | Msa0296710:intron | 20.0% |
| !!! | AGTTTCTTTTAATACAGTTT+TGG | + | chr2_3:50154432-50154451 | None:intergenic | 20.0% |
| !!! | GAATTAATATTTTGAATAGG+AGG | + | chr2_3:50154827-50154846 | None:intergenic | 20.0% |
| !!! | TTAGTTTTTTTGTGTTAAGA+AGG | - | chr2_3:50155023-50155042 | Msa0296710:five_prime_UTR | 20.0% |
| ! | TTTACTTATGAAACCGTAAT+GGG | + | chr2_3:50151160-50151179 | None:intergenic | 25.0% |
| !! | TTTTACTTATGAAACCGTAA+TGG | + | chr2_3:50151161-50151180 | None:intergenic | 25.0% |
| ! | AGAAATTCAAAGAGATTTGA+AGG | + | chr2_3:50151251-50151270 | None:intergenic | 25.0% |
| ! | TCAAATCTCTTTGAATTTCT+TGG | - | chr2_3:50151251-50151270 | Msa0296710:exon | 25.0% |
| !!! | GAATTCAATTTTTTTTCCCT+AGG | - | chr2_3:50151311-50151330 | Msa0296710:intron | 25.0% |
| !!! | GAAATCAAACTATATTTTGG+AGG | + | chr2_3:50151351-50151370 | None:intergenic | 25.0% |
| ! | AAAATGTTTGATTGCATGAA+TGG | - | chr2_3:50151415-50151434 | Msa0296710:intron | 25.0% |
| ! | AATATAAGTCAACATCAAGA+AGG | - | chr2_3:50151713-50151732 | Msa0296710:intron | 25.0% |
| !!! | CTCTTCACATTTTTTTTTTC+GGG | - | chr2_3:50151818-50151837 | Msa0296710:intron | 25.0% |
| !!! | CATTAAAAGGTGCATTTTTT+AGG | + | chr2_3:50152027-50152046 | None:intergenic | 25.0% |
| !! | CACCTTTTAATGTCAATAAA+TGG | - | chr2_3:50152035-50152054 | Msa0296710:intron | 25.0% |
| ! | CTCCATTTATTGACATTAAA+AGG | + | chr2_3:50152040-50152059 | None:intergenic | 25.0% |
| !! | CTTTTAATGTCAATAAATGG+AGG | - | chr2_3:50152038-50152057 | Msa0296710:intron | 25.0% |
| !! | CAAGATAGTATCAAAAGTTT+TGG | - | chr2_3:50152085-50152104 | Msa0296710:intron | 25.0% |
| ! | AAGATTTAAGTGAAGAAGAT+TGG | - | chr2_3:50152338-50152357 | Msa0296710:intron | 25.0% |
| !!! | ATTTTTCAAGTCTGAATTCA+AGG | - | chr2_3:50152377-50152396 | Msa0296710:intron | 25.0% |
| !!! | TTTCTACTTGTGTTATTTAC+AGG | - | chr2_3:50152439-50152458 | Msa0296710:intron | 25.0% |
| ! | CAAGTTATTAATCATAGATG+TGG | - | chr2_3:50152497-50152516 | Msa0296710:intron | 25.0% |
| ! | TTATTAATCATAGATGTGGA+AGG | - | chr2_3:50152501-50152520 | Msa0296710:intron | 25.0% |
| !!! | ATATCAAATCTCCCTTTTTT+TGG | - | chr2_3:50152566-50152585 | Msa0296710:intron | 25.0% |
| !!! | TATTGCTTTTAAATCAGTTG+TGG | - | chr2_3:50152925-50152944 | Msa0296710:intron | 25.0% |
| !!! | ATTGCTTTTAAATCAGTTGT+GGG | - | chr2_3:50152926-50152945 | Msa0296710:intron | 25.0% |
| ! | TTTGCAAGAACAATTAGAAA+AGG | - | chr2_3:50153012-50153031 | Msa0296710:CDS | 25.0% |
| !!! | ATATTTTTATAGGGTATTGG+CGG | - | chr2_3:50153337-50153356 | Msa0296710:intron | 25.0% |
| !! | AAGAGTGTAGTATACATAAA+AGG | + | chr2_3:50153501-50153520 | None:intergenic | 25.0% |
| !! | ACGTAAAATCTAAGATCTTT+GGG | - | chr2_3:50153755-50153774 | Msa0296710:intron | 25.0% |
| ! | TCTACAACTTGTAGTATTTA+AGG | + | chr2_3:50154013-50154032 | None:intergenic | 25.0% |
| ! | ACTTTGATTAAATAGCTAAG+TGG | - | chr2_3:50154040-50154059 | Msa0296710:intron | 25.0% |
| ! | ATTATGCAGAAAAATATGTG+TGG | - | chr2_3:50154165-50154184 | Msa0296710:CDS | 25.0% |
| ! | AGGTTAGAACTAATTAAACA+TGG | - | chr2_3:50154255-50154274 | Msa0296710:CDS | 25.0% |
| !! | ATTCCTAATTAGATTTGGTA+AGG | + | chr2_3:50154302-50154321 | None:intergenic | 25.0% |
| ! | TTACCAAATCTAATTAGGAA+TGG | - | chr2_3:50154301-50154320 | Msa0296710:CDS | 25.0% |
| ! | TAACCATTCCTAATTAGATT+TGG | + | chr2_3:50154307-50154326 | None:intergenic | 25.0% |
| !! | ATCAGTAATTTGAGGTTATA+GGG | + | chr2_3:50154338-50154357 | None:intergenic | 25.0% |
| !! | TATCAGTAATTTGAGGTTAT+AGG | + | chr2_3:50154339-50154358 | None:intergenic | 25.0% |
| ! | CAGTTTATATCAGTAATTTG+AGG | + | chr2_3:50154346-50154365 | None:intergenic | 25.0% |
| ! | CTCAAATTACTGATATAAAC+TGG | - | chr2_3:50154344-50154363 | Msa0296710:intron | 25.0% |
| ! | GTAATCATGTATTAATGTTG+TGG | + | chr2_3:50154755-50154774 | None:intergenic | 25.0% |
| ! | GTGTTAAGAAGGATAATTTA+TGG | - | chr2_3:50155034-50155053 | Msa0296710:five_prime_UTR | 25.0% |
| TTGGAGTAAGAGAAGATAAT+GGG | + | chr2_3:50151130-50151149 | None:intergenic | 30.0% | |
| ! | TTTGGAGTAAGAGAAGATAA+TGG | + | chr2_3:50151131-50151150 | None:intergenic | 30.0% |
| TTCTCTCTCAATCAAAATCT+AGG | - | chr2_3:50151478-50151497 | Msa0296710:intron | 30.0% | |
| TCTCTCTCAATCAAAATCTA+GGG | - | chr2_3:50151479-50151498 | Msa0296710:intron | 30.0% | |
| TCAGTTTAATGTTGCTAAGA+GGG | - | chr2_3:50151567-50151586 | Msa0296710:intron | 30.0% | |
| TGTTCTAATGCACAAAAAGT+TGG | - | chr2_3:50151857-50151876 | Msa0296710:intron | 30.0% | |
| AATGCACAAAAAGTTGGAAA+AGG | - | chr2_3:50151863-50151882 | Msa0296710:intron | 30.0% | |
| TGTTATTCCGACAGATAAAA+TGG | - | chr2_3:50151949-50151968 | Msa0296710:intron | 30.0% | |
| TAAACACTTTAGCCAATACA+AGG | - | chr2_3:50152285-50152304 | Msa0296710:intron | 30.0% | |
| TCTTCTTCACTTAAATCTTC+TGG | + | chr2_3:50152337-50152356 | None:intergenic | 30.0% | |
| CTCCATAAATCCTTATAGTT+GGG | + | chr2_3:50152683-50152702 | None:intergenic | 30.0% | |
| TCTCCATAAATCCTTATAGT+TGG | + | chr2_3:50152684-50152703 | None:intergenic | 30.0% | |
| CAAAATTTGAAGAGAGTCAA+AGG | - | chr2_3:50153125-50153144 | Msa0296710:CDS | 30.0% | |
| AAATATGGAGAAACAAGTTG+AGG | - | chr2_3:50153159-50153178 | Msa0296710:CDS | 30.0% | |
| ! | GAAACAAGTTGAGGAAAAAA+TGG | - | chr2_3:50153168-50153187 | Msa0296710:intron | 30.0% |
| TGTTCACAAGGATAATAACA+CGG | - | chr2_3:50153396-50153415 | Msa0296710:intron | 30.0% | |
| !!! | GTTTTGTTTTTTTGTTCAGC+TGG | - | chr2_3:50153469-50153488 | Msa0296710:intron | 30.0% |
| ACTCAATGAGACAAAGATTA+TGG | + | chr2_3:50153640-50153659 | None:intergenic | 30.0% | |
| AATCTTTGTCTCATTGAGTT+TGG | - | chr2_3:50153641-50153660 | Msa0296710:CDS | 30.0% | |
| ! | GACGTAAAATCTAAGATCTT+TGG | - | chr2_3:50153754-50153773 | Msa0296710:intron | 30.0% |
| ! | TAAAATCTAAGATCTTTGGG+TGG | - | chr2_3:50153758-50153777 | Msa0296710:intron | 30.0% |
| CATGTGTTCATATGTATGTT+AGG | - | chr2_3:50153856-50153875 | Msa0296710:CDS | 30.0% | |
| ! | AGTTTCATTCATGTGTTGTT+TGG | - | chr2_3:50153892-50153911 | Msa0296710:CDS | 30.0% |
| ! | GATTGGTGTTTGAGATAATA+TGG | - | chr2_3:50153917-50153936 | Msa0296710:CDS | 30.0% |
| !! | AATATCCAAGTTCTAGGTAT+TGG | - | chr2_3:50154071-50154090 | Msa0296710:intron | 30.0% |
| TTAATCCAATACCTAGAACT+TGG | + | chr2_3:50154079-50154098 | None:intergenic | 30.0% | |
| ATCAAATGAAGGTGATCATT+TGG | - | chr2_3:50154102-50154121 | Msa0296710:intron | 30.0% | |
| TAATTATGCAGAAAATCCAG+AGG | + | chr2_3:50154149-50154168 | None:intergenic | 30.0% | |
| GCACATAAAGAGTTTATACT+TGG | - | chr2_3:50154200-50154219 | Msa0296710:CDS | 30.0% | |
| ! | CTAATTAGATTTGGTAAGGT+TGG | + | chr2_3:50154298-50154317 | None:intergenic | 30.0% |
| CAACCTTACCAAATCTAATT+AGG | - | chr2_3:50154296-50154315 | Msa0296710:CDS | 30.0% | |
| ! | TAAGTAGTCACTTTGAGTTA+TGG | + | chr2_3:50154398-50154417 | None:intergenic | 30.0% |
| ATAACTCAAAGTGACTACTT+AGG | - | chr2_3:50154397-50154416 | Msa0296710:intron | 30.0% | |
| ACAAAAATAGACTTTGTCGT+TGG | - | chr2_3:50154473-50154492 | Msa0296710:CDS | 30.0% | |
| TTCGATTATGTTGAAATTGC+AGG | - | chr2_3:50154844-50154863 | Msa0296710:intron | 30.0% | |
| !! | GAATTGATATTGTTTCTAGC+TGG | - | chr2_3:50154929-50154948 | Msa0296710:five_prime_UTR | 30.0% |
| CTCCAAACATATACCCATTA+CGG | - | chr2_3:50151144-50151163 | Msa0296710:three_prime_UTR | 35.0% | |
| !! | AACCGTAATGGGTATATGTT+TGG | + | chr2_3:50151149-50151168 | None:intergenic | 35.0% |
| !!! | TTGCATGAATGGCTTGTTTT+TGG | - | chr2_3:50151426-50151445 | Msa0296710:intron | 35.0% |
| !!! | TGCATGAATGGCTTGTTTTT+GGG | - | chr2_3:50151427-50151446 | Msa0296710:intron | 35.0% |
| !!! | TGTCAATGATTTTTTTCCGC+TGG | - | chr2_3:50151453-50151472 | Msa0296710:intron | 35.0% |
| TGACTGTGAATGTTGCTAAA+AGG | - | chr2_3:50151513-50151532 | Msa0296710:intron | 35.0% | |
| GACTGTGAATGTTGCTAAAA+GGG | - | chr2_3:50151514-50151533 | Msa0296710:intron | 35.0% | |
| ACTGTGAATGTTGCTAAAAG+GGG | - | chr2_3:50151515-50151534 | Msa0296710:intron | 35.0% | |
| TTGCTAAAAGGGGAAGAATT+GGG | - | chr2_3:50151525-50151544 | Msa0296710:intron | 35.0% | |
| GTCAGTTTAATGTTGCTAAG+AGG | - | chr2_3:50151566-50151585 | Msa0296710:intron | 35.0% | |
| CAGTTTAATGTTGCTAAGAG+GGG | - | chr2_3:50151568-50151587 | Msa0296710:intron | 35.0% | |
| GTTGGAAAAGGAAGAACTAT+TGG | - | chr2_3:50151875-50151894 | Msa0296710:intron | 35.0% | |
| ATTCCGACAGATAAAATGGT+AGG | - | chr2_3:50151953-50151972 | Msa0296710:intron | 35.0% | |
| ! | ACACCTACCATTTTATCTGT+CGG | + | chr2_3:50151959-50151978 | None:intergenic | 35.0% |
| ! | AAAATGGTAGGTGTTGTATC+AGG | - | chr2_3:50151965-50151984 | Msa0296710:intron | 35.0% |
| CTATCTCATTTGCCTTGTAT+TGG | + | chr2_3:50152300-50152319 | None:intergenic | 35.0% | |
| !! | TGAAGAAGATTGGAAGTACT+TGG | - | chr2_3:50152348-50152367 | Msa0296710:intron | 35.0% |
| GAGAGATACTGAAACTGAAA+AGG | - | chr2_3:50152655-50152674 | Msa0296710:intron | 35.0% | |
| AGCCCAACTATAAGGATTTA+TGG | - | chr2_3:50152678-50152697 | Msa0296710:intron | 35.0% | |
| TCGAAAAAGAGAGAAACATG+AGG | - | chr2_3:50153089-50153108 | Msa0296710:CDS | 35.0% | |
| CGAAAAAGAGAGAAACATGA+GGG | - | chr2_3:50153090-50153109 | Msa0296710:CDS | 35.0% | |
| AAACATGAGGGAAGAAATGA+CGG | - | chr2_3:50153102-50153121 | Msa0296710:CDS | 35.0% | |
| AAGGCAACTAGGAGAAAATA+TGG | - | chr2_3:50153144-50153163 | Msa0296710:CDS | 35.0% | |
| ! | AATGTCTGAACTTGTTCACA+AGG | - | chr2_3:50153384-50153403 | Msa0296710:intron | 35.0% |
| ATACTACACTCTTACCCTTT+AGG | - | chr2_3:50153508-50153527 | Msa0296710:intron | 35.0% | |
| ! | GTCTAACTCATGTGGTTTTT+AGG | - | chr2_3:50153598-50153617 | Msa0296710:intron | 35.0% |
| !! | TAACTCATGTGGTTTTTAGG+TGG | - | chr2_3:50153601-50153620 | Msa0296710:intron | 35.0% |
| GTTTGGTCATTGGATTATGT+TGG | - | chr2_3:50153658-50153677 | Msa0296710:CDS | 35.0% | |
| !! | ATAATGAATAGGAGGGCATT+GGG | - | chr2_3:50153699-50153718 | Msa0296710:CDS | 35.0% |
| !!! | TATTCCACTAGTTTTTCTGC+AGG | - | chr2_3:50153797-50153816 | Msa0296710:CDS | 35.0% |
| ! | TTTTCCTGCAGAAAAACTAG+TGG | + | chr2_3:50153804-50153823 | None:intergenic | 35.0% |
| !! | TCATGTGTTGTTTGGTTGAT+TGG | - | chr2_3:50153900-50153919 | Msa0296710:CDS | 35.0% |
| CTAGAACTTGGATATTCCTA+GGG | + | chr2_3:50154067-50154086 | None:intergenic | 35.0% | |
| ! | GTGATCATTTGGCTTATCTA+AGG | - | chr2_3:50154113-50154132 | Msa0296710:intron | 35.0% |
| ! | TTGGCTTATCTAAGGACTTT+TGG | - | chr2_3:50154121-50154140 | Msa0296710:intron | 35.0% |
| ! | ATATGTGTGGACATTAGCTT+AGG | - | chr2_3:50154178-50154197 | Msa0296710:CDS | 35.0% |
| ! | CTTGTTGTATCTCGCTTATT+AGG | - | chr2_3:50154535-50154554 | Msa0296710:intron | 35.0% |
| TATCTCGCTTATTAGGTACA+TGG | - | chr2_3:50154542-50154561 | Msa0296710:intron | 35.0% | |
| TTGAAATTGCAGGTCAAGTA+AGG | - | chr2_3:50154854-50154873 | Msa0296710:intron | 35.0% | |
| AAGTAAACAACCCTGCACAA+TGG | - | chr2_3:50151179-50151198 | Msa0296710:three_prime_UTR | 40.0% | |
| GGCAGCAAAAAACTTACCTA+GGG | + | chr2_3:50151330-50151349 | None:intergenic | 40.0% | |
| AGGCAGCAAAAAACTTACCT+AGG | + | chr2_3:50151331-50151350 | None:intergenic | 40.0% | |
| !!! | GCATGAATGGCTTGTTTTTG+GGG | - | chr2_3:50151428-50151447 | Msa0296710:intron | 40.0% |
| GTTGCTAAAAGGGGAAGAAT+TGG | - | chr2_3:50151524-50151543 | Msa0296710:intron | 40.0% | |
| TTGCTAAGAGGGGAAGAATT+GGG | - | chr2_3:50151578-50151597 | Msa0296710:intron | 40.0% | |
| ATCTCTGAATCATGATCTGG+GGG | + | chr2_3:50151668-50151687 | None:intergenic | 40.0% | |
| CATCTCTGAATCATGATCTG+GGG | + | chr2_3:50151669-50151688 | None:intergenic | 40.0% | |
| GCATCTCTGAATCATGATCT+GGG | + | chr2_3:50151670-50151689 | None:intergenic | 40.0% | |
| TGCATCTCTGAATCATGATC+TGG | + | chr2_3:50151671-50151690 | None:intergenic | 40.0% | |
| !! | AAGAAAAAGAAGAGCGTTGC+TGG | - | chr2_3:50151914-50151933 | Msa0296710:intron | 40.0% |
| ! | AGCTGCTAATTTTGTGACTG+AGG | - | chr2_3:50151988-50152007 | Msa0296710:intron | 40.0% |
| CCTGCACTCAACAATTAAGA+TGG | + | chr2_3:50152174-50152193 | None:intergenic | 40.0% | |
| CCATCTTAATTGTTGAGTGC+AGG | - | chr2_3:50152171-50152190 | Msa0296710:intron | 40.0% | |
| CAAGGCAAATGAGATAGCTT+TGG | - | chr2_3:50152303-50152322 | Msa0296710:intron | 40.0% | |
| TGAAAAGGAGCCCAACTATA+AGG | - | chr2_3:50152670-50152689 | Msa0296710:intron | 40.0% | |
| ATGACTCACACAAACAGCAA+CGG | - | chr2_3:50152704-50152723 | Msa0296710:intron | 40.0% | |
| TCTTCATATCACCTAGAAGC+TGG | - | chr2_3:50152869-50152888 | Msa0296710:intron | 40.0% | |
| TATCACCTAGAAGCTGGATA+TGG | - | chr2_3:50152875-50152894 | Msa0296710:intron | 40.0% | |
| ATCACCTAGAAGCTGGATAT+GGG | - | chr2_3:50152876-50152895 | Msa0296710:intron | 40.0% | |
| AGCTGGAATTAAACCCCTAA+AGG | - | chr2_3:50152979-50152998 | Msa0296710:CDS | 40.0% | |
| GCTGGAATTAAACCCCTAAA+GGG | - | chr2_3:50152980-50152999 | Msa0296710:CDS | 40.0% | |
| GAATTAAACCCCTAAAGGGA+AGG | - | chr2_3:50152984-50153003 | Msa0296710:CDS | 40.0% | |
| AAATCAGACCTTCCCTTTAG+GGG | + | chr2_3:50152995-50153014 | None:intergenic | 40.0% | |
| CAAATCAGACCTTCCCTTTA+GGG | + | chr2_3:50152996-50153015 | None:intergenic | 40.0% | |
| CAAGGATAATAACACGGCTT+CGG | - | chr2_3:50153402-50153421 | Msa0296710:intron | 40.0% | |
| !!! | TTTTTTTGTTCAGCTGGCGT+TGG | - | chr2_3:50153475-50153494 | Msa0296710:intron | 40.0% |
| ATAAGGGAGTCTAACTCATG+TGG | - | chr2_3:50153590-50153609 | Msa0296710:intron | 40.0% | |
| !!! | ATGTGGTTTTTAGGTGGCTA+AGG | - | chr2_3:50153607-50153626 | Msa0296710:intron | 40.0% |
| GTCTCATTGAGTTTGGTCAT+TGG | - | chr2_3:50153648-50153667 | Msa0296710:CDS | 40.0% | |
| ! | GATAATGAATAGGAGGGCAT+TGG | - | chr2_3:50153698-50153717 | Msa0296710:CDS | 40.0% |
| TAAATAGCTAAGTGGTCCCT+AGG | - | chr2_3:50154048-50154067 | Msa0296710:intron | 40.0% | |
| CCTAGAACTTGGATATTCCT+AGG | + | chr2_3:50154068-50154087 | None:intergenic | 40.0% | |
| CCTAGGAATATCCAAGTTCT+AGG | - | chr2_3:50154065-50154084 | Msa0296710:intron | 40.0% | |
| !! | CTTTGTCGTTGGCTTAAATG+TGG | - | chr2_3:50154484-50154503 | Msa0296710:CDS | 40.0% |
| ! | GTCAAGCTTTGTACATGTGT+CGG | - | chr2_3:50154720-50154739 | Msa0296710:intron | 40.0% |
| TAAACAACCCTGCACAATGG+AGG | - | chr2_3:50151182-50151201 | Msa0296710:three_prime_UTR | 45.0% | |
| GAGATACAGAGCAACGCTAA+AGG | - | chr2_3:50151211-50151230 | Msa0296710:three_prime_UTR | 45.0% | |
| TGATTGAGAGAGAAAGCCAG+CGG | + | chr2_3:50151472-50151491 | None:intergenic | 45.0% | |
| GTTGCTAAGAGGGGAAGAAT+TGG | - | chr2_3:50151577-50151596 | Msa0296710:intron | 45.0% | |
| AGAGGGGAAGAATTGGGAAT+TGG | - | chr2_3:50151584-50151603 | Msa0296710:intron | 45.0% | |
| GAGGGGAAGAATTGGGAATT+GGG | - | chr2_3:50151585-50151604 | Msa0296710:intron | 45.0% | |
| TCAAGCTGTTAGCTATGACG+CGG | - | chr2_3:50152532-50152551 | Msa0296710:intron | 45.0% | |
| ACACAAACAGCAACGGAGAA+TGG | - | chr2_3:50152711-50152730 | Msa0296710:intron | 45.0% | |
| TCACCTAGAAGCTGGATATG+GGG | - | chr2_3:50152877-50152896 | Msa0296710:intron | 45.0% | |
| ATCAGGATATTGTCGTGGCT+TGG | - | chr2_3:50152955-50152974 | Msa0296710:intron | 45.0% | |
| TCAGGATATTGTCGTGGCTT+GGG | - | chr2_3:50152956-50152975 | Msa0296710:intron | 45.0% | |
| GCAAATCAGACCTTCCCTTT+AGG | + | chr2_3:50152997-50153016 | None:intergenic | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | - | chr2_3:50153133-50153152 | Msa0296710:CDS | 45.0% | |
| CAGCACAAGCAGTACCTAAA+GGG | + | chr2_3:50153525-50153544 | None:intergenic | 45.0% | |
| ! | CTTTAGGTACTGCTTGTGCT+GGG | - | chr2_3:50153524-50153543 | Msa0296710:intron | 45.0% |
| ! | TTTAGGTACTGCTTGTGCTG+GGG | - | chr2_3:50153525-50153544 | Msa0296710:intron | 45.0% |
| ! | CTAAGGACTTTTGGTACCTC+TGG | - | chr2_3:50154130-50154149 | Msa0296710:intron | 45.0% |
| ! | CTTTGTACATGTGTCGGTGT+TGG | - | chr2_3:50154726-50154745 | Msa0296710:intron | 45.0% |
| !!! | TTATTTTATTAAATTTGTTA+TGG | - | chr2_3:50153302-50153321 | Msa0296710:intron | 5.0% |
| !!! | TATTTTATTAAATTTGTTAT+GGG | - | chr2_3:50153303-50153322 | Msa0296710:intron | 5.0% |
| !!! | GTTATTTTTAATATTTTTAT+AGG | - | chr2_3:50153327-50153346 | Msa0296710:intron | 5.0% |
| CTCGTTACCTCCATTGTGCA+GGG | + | chr2_3:50151192-50151211 | None:intergenic | 50.0% | |
| TCTCGTTACCTCCATTGTGC+AGG | + | chr2_3:50151193-50151212 | None:intergenic | 50.0% | |
| TGTCCCCATATCCAGCTTCT+AGG | + | chr2_3:50152883-50152902 | None:intergenic | 50.0% | |
| GAGCGATCAGGATATTGTCG+TGG | - | chr2_3:50152950-50152969 | Msa0296710:intron | 50.0% | |
| CCAGCACAAGCAGTACCTAA+AGG | + | chr2_3:50153526-50153545 | None:intergenic | 50.0% | |
| ! | CCTTTAGGTACTGCTTGTGC+TGG | - | chr2_3:50153523-50153542 | Msa0296710:intron | 50.0% |
| GGGCAATGCACACTGGATTA+TGG | + | chr2_3:50154806-50154825 | None:intergenic | 50.0% | |
| AATAGGAGGGCAATGCACAC+TGG | + | chr2_3:50154813-50154832 | None:intergenic | 50.0% | |
| TCAGTTGTGGGAGAGCGATC+AGG | - | chr2_3:50152938-50152957 | Msa0296710:intron | 55.0% | |
| ! | TATTGTCGTGGCTTGGGAGC+TGG | - | chr2_3:50152962-50152981 | Msa0296710:intron | 55.0% |
| !! | TGAATAGGAGGGCATTGGGC+AGG | - | chr2_3:50153703-50153722 | Msa0296710:CDS | 55.0% |
| GGTACTGCTTGTGCTGGGGT+TGG | - | chr2_3:50153529-50153548 | Msa0296710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50151103 | 50155087 | 50151103 | ID=Msa0296710;Name=Msa0296710 |
| chr2_3 | mRNA | 50151103 | 50155087 | 50151103 | ID=Msa0296710-mRNA-1;Parent=Msa0296710;Name=Msa0296710-mRNA-1;_AED=0.19;_eAED=0.19;_QI=232|0.42|0.37|1|0.28|0.25|8|152|296 |
| chr2_3 | exon | 50151103 | 50151324 | 50151103 | ID=Msa0296710-mRNA-1:exon:15778;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50152804 | 50152841 | 50152804 | ID=Msa0296710-mRNA-1:exon:15777;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50152968 | 50153184 | 50152968 | ID=Msa0296710-mRNA-1:exon:15776;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50153637 | 50153729 | 50153637 | ID=Msa0296710-mRNA-1:exon:15775;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50153792 | 50153997 | 50153792 | ID=Msa0296710-mRNA-1:exon:15774;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50154145 | 50154335 | 50154145 | ID=Msa0296710-mRNA-1:exon:15773;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50154456 | 50154533 | 50154456 | ID=Msa0296710-mRNA-1:exon:15772;Parent=Msa0296710-mRNA-1 |
| chr2_3 | exon | 50154858 | 50155087 | 50154858 | ID=Msa0296710-mRNA-1:exon:15771;Parent=Msa0296710-mRNA-1 |
| chr2_3 | five_prime_UTR | 50154858 | 50155087 | 50154858 | ID=Msa0296710-mRNA-1:five_prime_utr;Parent=Msa0296710-mRNA-1 |
| chr2_3 | five_prime_UTR | 50154532 | 50154533 | 50154532 | ID=Msa0296710-mRNA-1:five_prime_utr;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50154456 | 50154531 | 50154456 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50154145 | 50154335 | 50154145 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50153792 | 50153997 | 50153792 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50153637 | 50153729 | 50153637 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50152968 | 50153184 | 50152968 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50152804 | 50152841 | 50152804 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | CDS | 50151255 | 50151324 | 50151255 | ID=Msa0296710-mRNA-1:cds;Parent=Msa0296710-mRNA-1 |
| chr2_3 | three_prime_UTR | 50151103 | 50151254 | 50151103 | ID=Msa0296710-mRNA-1:three_prime_utr;Parent=Msa0296710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
