AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524890 MtrunA17_Chr3g0137981 98.140 215 4 0 1 215 47 261 3.42e-153 425
Msa0524890 MtrunA17_Chr4g0003661 51.149 174 81 2 19 192 11 180 3.00e-51 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524890 AT5G11280.1 72.195 205 54 2 13 215 6 209 2.94e-111 317
Msa0524890 AT1G80200.3 40.933 193 108 4 6 192 25 217 1.99e-41 140
Msa0524890 AT1G80200.2 40.933 193 108 4 6 192 27 219 2.61e-41 140
Msa0524890 AT1G80200.1 41.935 186 102 4 13 192 4 189 2.73e-41 139

Find 80 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAAAGTTTAACAATTC+TGG 0.201220 3_4:+78424216 None:intergenic
TATCTGTTCCAAAAGGAATT+TGG 0.208265 3_4:+78424261 None:intergenic
TACCCTGGTGCTGCTTTAAA+TGG 0.213795 3_4:-78425361 Msa0524890:CDS
CCTTTCTTCCAAATTCCTTT+TGG 0.252564 3_4:-78424269 Msa0524890:three_prime_UTR
TTGGATCACTTCTTGTGATA+TGG 0.253529 3_4:-78424529 Msa0524890:CDS
TGTTCCTGTTGGCACACAAC+TGG 0.311672 3_4:-78425733 Msa0524890:five_prime_UTR
TTCGCAGGATCGGTATTTAC+TGG 0.317717 3_4:+78424476 None:intergenic
TGTAAAGTATGATATGAAAA+AGG 0.337916 3_4:-78424399 Msa0524890:CDS
CCCGGTAGAATGAGCATGTT+TGG 0.342893 3_4:-78424548 Msa0524890:CDS
AGTTGTGTGCCAACAGGAAC+AGG 0.356731 3_4:+78425735 None:intergenic
ATGATTTATCAGGTCCTTGC+AGG 0.367749 3_4:-78424614 Msa0524890:intron
TCCTAGTTGGGATAGTTTGT+TGG 0.385762 3_4:-78425317 Msa0524890:CDS
GACTTTGATGAGCTCTTAAG+AGG 0.392333 3_4:+78424338 None:intergenic
TTTCCTGTTCCACTTGTAAA+GGG 0.393641 3_4:-78425391 Msa0524890:CDS
CTGCTAGGGCGGCCCCTGTC+CGG 0.405784 3_4:-78424373 Msa0524890:CDS
TACAGGGTTACATGCAGATC+TGG 0.408658 3_4:-78425469 Msa0524890:intron
GGAAGCTACTTTGCAGTAGC+AGG 0.416283 3_4:-78424593 Msa0524890:CDS
TGGATCACTTCTTGTGATAT+GGG 0.418628 3_4:-78424528 Msa0524890:CDS
GCAGTAGCAGGAGCACTTGT+TGG 0.425218 3_4:-78424581 Msa0524890:CDS
ATTTCCTGTTCCACTTGTAA+AGG 0.426556 3_4:-78425392 Msa0524890:CDS
GTGATGATGTTACATGTAAA+GGG 0.435849 3_4:+78425434 None:intergenic
TGAGGAAATGTTCCATCCCT+TGG 0.437177 3_4:+78425618 None:intergenic
AGACCCTTTACAAGTGGAAC+AGG 0.438573 3_4:+78425388 None:intergenic
ATCTTCTTCTTCCTTCTCCA+TGG 0.442248 3_4:-78425677 Msa0524890:exon
CTTCCCAGTTGTGTGCCAAC+AGG 0.443594 3_4:+78425729 None:intergenic
CAACATGACTGTTCCTAGTT+GGG 0.458590 3_4:-78425329 Msa0524890:CDS
CCAAAAGGAATTTGGAAGAA+AGG 0.460191 3_4:+78424269 None:intergenic
ATCATGGCAAACACCATTGT+CGG 0.471169 3_4:+78424437 None:intergenic
TGCAGAAGCTTCCTTGATAG+TGG 0.474544 3_4:+78425279 None:intergenic
TAAAATAGAGAAAATAAGAT+GGG 0.477086 3_4:-78425763 None:intergenic
TCCAAACATGCTCATTCTAC+CGG 0.484946 3_4:+78424547 None:intergenic
TGTGATGATGTTACATGTAA+AGG 0.485821 3_4:+78425433 None:intergenic
ACAACATGACTGTTCCTAGT+TGG 0.492866 3_4:-78425330 Msa0524890:CDS
CTATGTCTATCTGTTCCAAA+AGG 0.493372 3_4:+78424254 None:intergenic
GTATAATTTGACCACTATCA+AGG 0.493949 3_4:-78425290 Msa0524890:CDS
CTTGGAAGATGATGATGAGT+AGG 0.494468 3_4:+78425578 None:intergenic
AACCGATCTTCAACGCTTGG+AGG 0.495020 3_4:-78425254 Msa0524890:intron
GGTTTAGCAGTGGACCGGAC+AGG 0.498097 3_4:+78424359 None:intergenic
ATAAAATAGAGAAAATAAGA+TGG 0.501316 3_4:-78425764 None:intergenic
GTAGATGCGTGCTGCGATTG+AGG 0.506076 3_4:+78425600 None:intergenic
AGACAAGAAGGCACATATCA+TGG 0.508797 3_4:+78424421 None:intergenic
GTTTAGCAGTGGACCGGACA+GGG 0.519587 3_4:+78424360 None:intergenic
GGATCACTTCTTGTGATATG+GGG 0.524575 3_4:-78424527 Msa0524890:CDS
GAACAGTCATGTTGTGGATG+AGG 0.528098 3_4:+78425338 None:intergenic
AGTACCTGAAAAGAGGGACT+TGG 0.536129 3_4:+78425560 None:intergenic
CCAAACATGCTCATTCTACC+GGG 0.539556 3_4:+78424548 None:intergenic
TCATGGCAAACACCATTGTC+GGG 0.540397 3_4:+78424438 None:intergenic
TAAGAGGTTTAGCAGTGGAC+CGG 0.544646 3_4:+78424354 None:intergenic
ATCATACTTTACAGACAAGA+AGG 0.545178 3_4:+78424409 None:intergenic
GAAATCATCACCTTCATCCA+AGG 0.545466 3_4:-78425635 Msa0524890:CDS
ATGTTCCATCCCTTGGATGA+AGG 0.546480 3_4:+78425625 None:intergenic
GTTCCTGTTGGCACACAACT+GGG 0.559343 3_4:-78425732 Msa0524890:five_prime_UTR
GCACACAACTGGGAAGAAGT+TGG 0.560545 3_4:-78425722 Msa0524890:five_prime_UTR
AGTAACCGATCTTCAACGCT+TGG 0.561137 3_4:-78425257 Msa0524890:CDS
ACTTCTTGTGATATGGGGAC+TGG 0.561214 3_4:-78424522 Msa0524890:CDS
AGGCCATTTAAAGCAGCACC+AGG 0.563544 3_4:+78425358 None:intergenic
AACTAGGAACAGTCATGTTG+TGG 0.564260 3_4:+78425332 None:intergenic
AACTTGTGTTGCCATGGAGA+AGG 0.565910 3_4:+78425666 None:intergenic
ATATGGGGACTGGTCAAAGA+AGG 0.566921 3_4:-78424512 Msa0524890:CDS
AACCTCCAAGCGTTGAAGAT+CGG 0.570379 3_4:+78425252 None:intergenic
GTTTGGGAGTACCTGAAAAG+AGG 0.572459 3_4:+78425553 None:intergenic
AGATACAACTTGTGTTGCCA+TGG 0.577324 3_4:+78425660 None:intergenic
GATCAGATGCTTCTCGACGA+TGG 0.582609 3_4:+78425697 None:intergenic
TACAAAAGACCCTTTACAAG+TGG 0.585226 3_4:+78425382 None:intergenic
TAGACATAGACAGCTTTCGC+AGG 0.586449 3_4:+78424461 None:intergenic
ATAGACAGCTTTCGCAGGAT+CGG 0.587178 3_4:+78424466 None:intergenic
CATCACCTTCATCCAAGGGA+TGG 0.592421 3_4:-78425630 Msa0524890:CDS
CTTGTTGGTATTCTGAAACC+CGG 0.595853 3_4:-78424566 Msa0524890:CDS
TTTGGGAGTACCTGAAAAGA+GGG 0.608777 3_4:+78425554 None:intergenic
AAATCATCACCTTCATCCAA+GGG 0.613603 3_4:-78425634 Msa0524890:CDS
TGGGGACACCCTGTTCCTGT+TGG 0.617066 3_4:-78425744 Msa0524890:five_prime_UTR
TTTAGCAGTGGACCGGACAG+GGG 0.629054 3_4:+78424361 None:intergenic
TGTCTATGTCTACCCGACAA+TGG 0.638478 3_4:-78424450 Msa0524890:CDS
TCCAACAAACTATCCCAACT+AGG 0.646774 3_4:+78425316 None:intergenic
AAAATAGAGAAAATAAGATG+GGG 0.652672 3_4:-78425762 None:intergenic
CTGCAAAGTAGCTTCCTGCA+AGG 0.676389 3_4:+78424600 None:intergenic
GTTGTGTGCCAACAGGAACA+GGG 0.678585 3_4:+78425736 None:intergenic
GCTCTTAAGAGGTTTAGCAG+TGG 0.687561 3_4:+78424349 None:intergenic
GGCCATTTAAAGCAGCACCA+GGG 0.713591 3_4:+78425359 None:intergenic
TGATGATGTTACATGTAAAG+GGG 0.715942 3_4:+78425435 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTATCATTTTGATTAC+AGG - chr3_4:78424442-78424461 Msa0524890:CDS 15.0%
!!! AATTTATCATTTTGATTACA+GGG - chr3_4:78424443-78424462 Msa0524890:CDS 15.0%
!!! ATATTTTTCAATGATTTATC+AGG - chr3_4:78425304-78425323 Msa0524890:CDS 15.0%
!! TCAATCAATTAATAGAAAAA+TGG + chr3_4:78425740-78425759 None:intergenic 15.0%
!!! AAATTTATCATTTTGATTAC+AGG - chr3_4:78424442-78424461 Msa0524890:CDS 15.0%
!!! AATTTATCATTTTGATTACA+GGG - chr3_4:78424443-78424462 Msa0524890:CDS 15.0%
!!! ATATTTTTCAATGATTTATC+AGG - chr3_4:78425304-78425323 Msa0524890:CDS 15.0%
!! TCAATCAATTAATAGAAAAA+TGG + chr3_4:78425740-78425759 None:intergenic 15.0%
!! AATATGTTAGAATAACTAGA+AGG + chr3_4:78424415-78424434 None:intergenic 20.0%
!!! TTCTTTTTCTGTATTTAGAT+CGG - chr3_4:78424721-78424740 Msa0524890:intron 20.0%
!!! TGTAACATTTTTTGTTGAAA+TGG - chr3_4:78424972-78424991 Msa0524890:intron 20.0%
!!! GCATAAGCAATTTTTTTTTA+AGG - chr3_4:78425052-78425071 Msa0524890:intron 20.0%
!!! AAGCAATTTTTTTTTAAGGA+AGG - chr3_4:78425056-78425075 Msa0524890:intron 20.0%
!! TAAATCATTGAAAAATATCC+AGG + chr3_4:78425302-78425321 None:intergenic 20.0%
!! TGTAAAGTATGATATGAAAA+AGG - chr3_4:78425529-78425548 Msa0524890:intron 20.0%
!! AAATGAAAGTTTAACAATTC+TGG + chr3_4:78425715-78425734 None:intergenic 20.0%
!! AATATGTTAGAATAACTAGA+AGG + chr3_4:78424415-78424434 None:intergenic 20.0%
!!! TTCTTTTTCTGTATTTAGAT+CGG - chr3_4:78424721-78424740 Msa0524890:intron 20.0%
!!! TGTAACATTTTTTGTTGAAA+TGG - chr3_4:78424972-78424991 Msa0524890:intron 20.0%
!!! GCATAAGCAATTTTTTTTTA+AGG - chr3_4:78425052-78425071 Msa0524890:intron 20.0%
!!! AAGCAATTTTTTTTTAAGGA+AGG - chr3_4:78425056-78425075 Msa0524890:intron 20.0%
!! TAAATCATTGAAAAATATCC+AGG + chr3_4:78425302-78425321 None:intergenic 20.0%
!! TGTAAAGTATGATATGAAAA+AGG - chr3_4:78425529-78425548 Msa0524890:intron 20.0%
!! AAATGAAAGTTTAACAATTC+TGG + chr3_4:78425715-78425734 None:intergenic 20.0%
! GGAAGAAATAAAAAGAGTTT+GGG + chr3_4:78424394-78424413 None:intergenic 25.0%
! AGGAAGAAATAAAAAGAGTT+TGG + chr3_4:78424395-78424414 None:intergenic 25.0%
!!! TTTTTTTTTTGGTTCAGACA+TGG - chr3_4:78424932-78424951 Msa0524890:intron 25.0%
! CAATAATCAATTGCTATGTA+GGG + chr3_4:78425015-78425034 None:intergenic 25.0%
! AAATAGCTGAAATATCCAAA+GGG + chr3_4:78425224-78425243 None:intergenic 25.0%
! AAAATAGCTGAAATATCCAA+AGG + chr3_4:78425225-78425244 None:intergenic 25.0%
! GGAAGAAATAAAAAGAGTTT+GGG + chr3_4:78424394-78424413 None:intergenic 25.0%
! AGGAAGAAATAAAAAGAGTT+TGG + chr3_4:78424395-78424414 None:intergenic 25.0%
!!! TTTTTTTTTTGGTTCAGACA+TGG - chr3_4:78424932-78424951 Msa0524890:intron 25.0%
! CAATAATCAATTGCTATGTA+GGG + chr3_4:78425015-78425034 None:intergenic 25.0%
! AAATAGCTGAAATATCCAAA+GGG + chr3_4:78425224-78425243 None:intergenic 25.0%
! AAAATAGCTGAAATATCCAA+AGG + chr3_4:78425225-78425244 None:intergenic 25.0%
! TGATGATGTTACATGTAAAG+GGG + chr3_4:78424496-78424515 None:intergenic 30.0%
! GTGATGATGTTACATGTAAA+GGG + chr3_4:78424497-78424516 None:intergenic 30.0%
! TGTGATGATGTTACATGTAA+AGG + chr3_4:78424498-78424517 None:intergenic 30.0%
GTATAATTTGACCACTATCA+AGG - chr3_4:78424638-78424657 Msa0524890:intron 30.0%
TTTCTGTATTTAGATCGGTT+TGG - chr3_4:78424726-78424745 Msa0524890:intron 30.0%
AAATAACATGGCATGTCTAT+TGG - chr3_4:78424801-78424820 Msa0524890:intron 30.0%
AAGCAATCATGAAGAACTTA+CGG + chr3_4:78424844-78424863 None:intergenic 30.0%
CCAATAATCAATTGCTATGT+AGG + chr3_4:78425016-78425035 None:intergenic 30.0%
CCTACATAGCAATTGATTAT+TGG - chr3_4:78425013-78425032 Msa0524890:intron 30.0%
! AGAGTATTCTCATTACTATG+AGG + chr3_4:78425093-78425112 None:intergenic 30.0%
! GCATATTTTATGCGAGTTTT+AGG + chr3_4:78425142-78425161 None:intergenic 30.0%
CAAATAGACAAGAACAACTA+GGG + chr3_4:78425166-78425185 None:intergenic 30.0%
! GTTCTTGTCTATTTGCATTT+TGG - chr3_4:78425171-78425190 Msa0524890:intron 30.0%
ATCATACTTTACAGACAAGA+AGG + chr3_4:78425522-78425541 None:intergenic 30.0%
ATATGAAAAAGGTTACTGCT+AGG - chr3_4:78425540-78425559 Msa0524890:intron 30.0%
TATGAAAAAGGTTACTGCTA+GGG - chr3_4:78425541-78425560 Msa0524890:intron 30.0%
TATCTGTTCCAAAAGGAATT+TGG + chr3_4:78425670-78425689 None:intergenic 30.0%
! TGATGATGTTACATGTAAAG+GGG + chr3_4:78424496-78424515 None:intergenic 30.0%
! GTGATGATGTTACATGTAAA+GGG + chr3_4:78424497-78424516 None:intergenic 30.0%
! TGTGATGATGTTACATGTAA+AGG + chr3_4:78424498-78424517 None:intergenic 30.0%
GTATAATTTGACCACTATCA+AGG - chr3_4:78424638-78424657 Msa0524890:intron 30.0%
TTTCTGTATTTAGATCGGTT+TGG - chr3_4:78424726-78424745 Msa0524890:intron 30.0%
AAATAACATGGCATGTCTAT+TGG - chr3_4:78424801-78424820 Msa0524890:intron 30.0%
AAGCAATCATGAAGAACTTA+CGG + chr3_4:78424844-78424863 None:intergenic 30.0%
CCAATAATCAATTGCTATGT+AGG + chr3_4:78425016-78425035 None:intergenic 30.0%
CCTACATAGCAATTGATTAT+TGG - chr3_4:78425013-78425032 Msa0524890:intron 30.0%
! AGAGTATTCTCATTACTATG+AGG + chr3_4:78425093-78425112 None:intergenic 30.0%
! GCATATTTTATGCGAGTTTT+AGG + chr3_4:78425142-78425161 None:intergenic 30.0%
CAAATAGACAAGAACAACTA+GGG + chr3_4:78425166-78425185 None:intergenic 30.0%
! GTTCTTGTCTATTTGCATTT+TGG - chr3_4:78425171-78425190 Msa0524890:intron 30.0%
ATCATACTTTACAGACAAGA+AGG + chr3_4:78425522-78425541 None:intergenic 30.0%
ATATGAAAAAGGTTACTGCT+AGG - chr3_4:78425540-78425559 Msa0524890:intron 30.0%
TATGAAAAAGGTTACTGCTA+GGG - chr3_4:78425541-78425560 Msa0524890:intron 30.0%
TATCTGTTCCAAAAGGAATT+TGG + chr3_4:78425670-78425689 None:intergenic 30.0%
AAATCATCACCTTCATCCAA+GGG - chr3_4:78424294-78424313 Msa0524890:three_prime_UTR 35.0%
ATTTCCTGTTCCACTTGTAA+AGG - chr3_4:78424536-78424555 Msa0524890:CDS 35.0%
TTTCCTGTTCCACTTGTAAA+GGG - chr3_4:78424537-78424556 Msa0524890:CDS 35.0%
TACAAAAGACCCTTTACAAG+TGG + chr3_4:78424549-78424568 None:intergenic 35.0%
GAGAGTTCATGGAAATAACA+TGG - chr3_4:78424789-78424808 Msa0524890:intron 35.0%
GCAAATAGACAAGAACAACT+AGG + chr3_4:78425167-78425186 None:intergenic 35.0%
!! ACTTGTTATAAGGCAGATGA+AGG + chr3_4:78425201-78425220 None:intergenic 35.0%
!! ATCCAAAGGGACTTGTTATA+AGG + chr3_4:78425211-78425230 None:intergenic 35.0%
GTACATAGTCTATTTCCATC+AGG - chr3_4:78425252-78425271 Msa0524890:intron 35.0%
TTGGATCACTTCTTGTGATA+TGG - chr3_4:78425399-78425418 Msa0524890:CDS 35.0%
TGGATCACTTCTTGTGATAT+GGG - chr3_4:78425400-78425419 Msa0524890:CDS 35.0%
! CTGGTCAAAGAAGGAATTTT+AGG - chr3_4:78425425-78425444 Msa0524890:CDS 35.0%
CCAAAAGGAATTTGGAAGAA+AGG + chr3_4:78425662-78425681 None:intergenic 35.0%
! CCTTTCTTCCAAATTCCTTT+TGG - chr3_4:78425659-78425678 Msa0524890:CDS 35.0%
CTATGTCTATCTGTTCCAAA+AGG + chr3_4:78425677-78425696 None:intergenic 35.0%
AAATCATCACCTTCATCCAA+GGG - chr3_4:78424294-78424313 Msa0524890:three_prime_UTR 35.0%
ATTTCCTGTTCCACTTGTAA+AGG - chr3_4:78424536-78424555 Msa0524890:CDS 35.0%
TTTCCTGTTCCACTTGTAAA+GGG - chr3_4:78424537-78424556 Msa0524890:CDS 35.0%
TACAAAAGACCCTTTACAAG+TGG + chr3_4:78424549-78424568 None:intergenic 35.0%
GAGAGTTCATGGAAATAACA+TGG - chr3_4:78424789-78424808 Msa0524890:intron 35.0%
GCAAATAGACAAGAACAACT+AGG + chr3_4:78425167-78425186 None:intergenic 35.0%
!! ACTTGTTATAAGGCAGATGA+AGG + chr3_4:78425201-78425220 None:intergenic 35.0%
!! ATCCAAAGGGACTTGTTATA+AGG + chr3_4:78425211-78425230 None:intergenic 35.0%
GTACATAGTCTATTTCCATC+AGG - chr3_4:78425252-78425271 Msa0524890:intron 35.0%
TTGGATCACTTCTTGTGATA+TGG - chr3_4:78425399-78425418 Msa0524890:CDS 35.0%
TGGATCACTTCTTGTGATAT+GGG - chr3_4:78425400-78425419 Msa0524890:CDS 35.0%
! CTGGTCAAAGAAGGAATTTT+AGG - chr3_4:78425425-78425444 Msa0524890:CDS 35.0%
CCAAAAGGAATTTGGAAGAA+AGG + chr3_4:78425662-78425681 None:intergenic 35.0%
! CCTTTCTTCCAAATTCCTTT+TGG - chr3_4:78425659-78425678 Msa0524890:CDS 35.0%
CTATGTCTATCTGTTCCAAA+AGG + chr3_4:78425677-78425696 None:intergenic 35.0%
ATCTTCTTCTTCCTTCTCCA+TGG - chr3_4:78424251-78424270 Msa0524890:three_prime_UTR 40.0%
AGATACAACTTGTGTTGCCA+TGG + chr3_4:78424271-78424290 None:intergenic 40.0%
GAAATCATCACCTTCATCCA+AGG - chr3_4:78424293-78424312 Msa0524890:three_prime_UTR 40.0%
! CTTGGAAGATGATGATGAGT+AGG + chr3_4:78424353-78424372 None:intergenic 40.0%
!! TTTGGGAGTACCTGAAAAGA+GGG + chr3_4:78424377-78424396 None:intergenic 40.0%
AACTAGGAACAGTCATGTTG+TGG + chr3_4:78424599-78424618 None:intergenic 40.0%
ACAACATGACTGTTCCTAGT+TGG - chr3_4:78424598-78424617 Msa0524890:CDS 40.0%
CAACATGACTGTTCCTAGTT+GGG - chr3_4:78424599-78424618 Msa0524890:CDS 40.0%
! TCCTAGTTGGGATAGTTTGT+TGG - chr3_4:78424611-78424630 Msa0524890:intron 40.0%
TCCAACAAACTATCCCAACT+AGG + chr3_4:78424615-78424634 None:intergenic 40.0%
AGACTGTTTGAGAGAGTTCA+TGG - chr3_4:78424778-78424797 Msa0524890:intron 40.0%
TGCCTTATAACAAGTCCCTT+TGG - chr3_4:78425206-78425225 Msa0524890:intron 40.0%
TATTTCCATCAGGTCTATGC+TGG - chr3_4:78425262-78425281 Msa0524890:CDS 40.0%
ATGATTTATCAGGTCCTTGC+AGG - chr3_4:78425314-78425333 Msa0524890:CDS 40.0%
!! CTTGTTGGTATTCTGAAACC+CGG - chr3_4:78425362-78425381 Msa0524890:CDS 40.0%
TCCAAACATGCTCATTCTAC+CGG + chr3_4:78425384-78425403 None:intergenic 40.0%
GGATCACTTCTTGTGATATG+GGG - chr3_4:78425401-78425420 Msa0524890:CDS 40.0%
ATCATGGCAAACACCATTGT+CGG + chr3_4:78425494-78425513 None:intergenic 40.0%
! AGACAAGAAGGCACATATCA+TGG + chr3_4:78425510-78425529 None:intergenic 40.0%
GACTTTGATGAGCTCTTAAG+AGG + chr3_4:78425593-78425612 None:intergenic 40.0%
ATCTTCTTCTTCCTTCTCCA+TGG - chr3_4:78424251-78424270 Msa0524890:three_prime_UTR 40.0%
AGATACAACTTGTGTTGCCA+TGG + chr3_4:78424271-78424290 None:intergenic 40.0%
GAAATCATCACCTTCATCCA+AGG - chr3_4:78424293-78424312 Msa0524890:three_prime_UTR 40.0%
! CTTGGAAGATGATGATGAGT+AGG + chr3_4:78424353-78424372 None:intergenic 40.0%
!! TTTGGGAGTACCTGAAAAGA+GGG + chr3_4:78424377-78424396 None:intergenic 40.0%
AACTAGGAACAGTCATGTTG+TGG + chr3_4:78424599-78424618 None:intergenic 40.0%
ACAACATGACTGTTCCTAGT+TGG - chr3_4:78424598-78424617 Msa0524890:CDS 40.0%
CAACATGACTGTTCCTAGTT+GGG - chr3_4:78424599-78424618 Msa0524890:CDS 40.0%
! TCCTAGTTGGGATAGTTTGT+TGG - chr3_4:78424611-78424630 Msa0524890:intron 40.0%
TCCAACAAACTATCCCAACT+AGG + chr3_4:78424615-78424634 None:intergenic 40.0%
AGACTGTTTGAGAGAGTTCA+TGG - chr3_4:78424778-78424797 Msa0524890:intron 40.0%
TGCCTTATAACAAGTCCCTT+TGG - chr3_4:78425206-78425225 Msa0524890:intron 40.0%
TATTTCCATCAGGTCTATGC+TGG - chr3_4:78425262-78425281 Msa0524890:CDS 40.0%
ATGATTTATCAGGTCCTTGC+AGG - chr3_4:78425314-78425333 Msa0524890:CDS 40.0%
!! CTTGTTGGTATTCTGAAACC+CGG - chr3_4:78425362-78425381 Msa0524890:CDS 40.0%
TCCAAACATGCTCATTCTAC+CGG + chr3_4:78425384-78425403 None:intergenic 40.0%
GGATCACTTCTTGTGATATG+GGG - chr3_4:78425401-78425420 Msa0524890:CDS 40.0%
ATCATGGCAAACACCATTGT+CGG + chr3_4:78425494-78425513 None:intergenic 40.0%
! AGACAAGAAGGCACATATCA+TGG + chr3_4:78425510-78425529 None:intergenic 40.0%
GACTTTGATGAGCTCTTAAG+AGG + chr3_4:78425593-78425612 None:intergenic 40.0%
AACTTGTGTTGCCATGGAGA+AGG + chr3_4:78424265-78424284 None:intergenic 45.0%
ATGTTCCATCCCTTGGATGA+AGG + chr3_4:78424306-78424325 None:intergenic 45.0%
TGAGGAAATGTTCCATCCCT+TGG + chr3_4:78424313-78424332 None:intergenic 45.0%
! TCTTCCAAGTCCCTCTTTTC+AGG - chr3_4:78424364-78424383 Msa0524890:CDS 45.0%
AGTACCTGAAAAGAGGGACT+TGG + chr3_4:78424371-78424390 None:intergenic 45.0%
!! GTTTGGGAGTACCTGAAAAG+AGG + chr3_4:78424378-78424397 None:intergenic 45.0%
TACAGGGTTACATGCAGATC+TGG - chr3_4:78424459-78424478 Msa0524890:CDS 45.0%
AGACCCTTTACAAGTGGAAC+AGG + chr3_4:78424543-78424562 None:intergenic 45.0%
! GTAAAGGGTCTTTTGTACCC+TGG - chr3_4:78424552-78424571 Msa0524890:CDS 45.0%
!! TACCCTGGTGCTGCTTTAAA+TGG - chr3_4:78424567-78424586 Msa0524890:CDS 45.0%
GAACAGTCATGTTGTGGATG+AGG + chr3_4:78424593-78424612 None:intergenic 45.0%
TGCAGAAGCTTCCTTGATAG+TGG + chr3_4:78424652-78424671 None:intergenic 45.0%
AGTAACCGATCTTCAACGCT+TGG - chr3_4:78424671-78424690 Msa0524890:intron 45.0%
!! AACCTCCAAGCGTTGAAGAT+CGG + chr3_4:78424679-78424698 None:intergenic 45.0%
! CTGGCACTTTTCAGTTAACC+TGG - chr3_4:78425281-78425300 Msa0524890:CDS 45.0%
CCAAACATGCTCATTCTACC+GGG + chr3_4:78425383-78425402 None:intergenic 45.0%
ACTTCTTGTGATATGGGGAC+TGG - chr3_4:78425406-78425425 Msa0524890:CDS 45.0%
!! ATATGGGGACTGGTCAAAGA+AGG - chr3_4:78425416-78425435 Msa0524890:CDS 45.0%
TTCGCAGGATCGGTATTTAC+TGG + chr3_4:78425455-78425474 None:intergenic 45.0%
ATAGACAGCTTTCGCAGGAT+CGG + chr3_4:78425465-78425484 None:intergenic 45.0%
TAGACATAGACAGCTTTCGC+AGG + chr3_4:78425470-78425489 None:intergenic 45.0%
TGTCTATGTCTACCCGACAA+TGG - chr3_4:78425478-78425497 Msa0524890:intron 45.0%
TCATGGCAAACACCATTGTC+GGG + chr3_4:78425493-78425512 None:intergenic 45.0%
GAAAAAGGTTACTGCTAGGG+CGG - chr3_4:78425544-78425563 Msa0524890:intron 45.0%
TAAGAGGTTTAGCAGTGGAC+CGG + chr3_4:78425577-78425596 None:intergenic 45.0%
GCTCTTAAGAGGTTTAGCAG+TGG + chr3_4:78425582-78425601 None:intergenic 45.0%
AACTTGTGTTGCCATGGAGA+AGG + chr3_4:78424265-78424284 None:intergenic 45.0%
ATGTTCCATCCCTTGGATGA+AGG + chr3_4:78424306-78424325 None:intergenic 45.0%
TGAGGAAATGTTCCATCCCT+TGG + chr3_4:78424313-78424332 None:intergenic 45.0%
! TCTTCCAAGTCCCTCTTTTC+AGG - chr3_4:78424364-78424383 Msa0524890:CDS 45.0%
AGTACCTGAAAAGAGGGACT+TGG + chr3_4:78424371-78424390 None:intergenic 45.0%
!! GTTTGGGAGTACCTGAAAAG+AGG + chr3_4:78424378-78424397 None:intergenic 45.0%
TACAGGGTTACATGCAGATC+TGG - chr3_4:78424459-78424478 Msa0524890:CDS 45.0%
AGACCCTTTACAAGTGGAAC+AGG + chr3_4:78424543-78424562 None:intergenic 45.0%
! GTAAAGGGTCTTTTGTACCC+TGG - chr3_4:78424552-78424571 Msa0524890:CDS 45.0%
!! TACCCTGGTGCTGCTTTAAA+TGG - chr3_4:78424567-78424586 Msa0524890:CDS 45.0%
GAACAGTCATGTTGTGGATG+AGG + chr3_4:78424593-78424612 None:intergenic 45.0%
TGCAGAAGCTTCCTTGATAG+TGG + chr3_4:78424652-78424671 None:intergenic 45.0%
AGTAACCGATCTTCAACGCT+TGG - chr3_4:78424671-78424690 Msa0524890:intron 45.0%
!! AACCTCCAAGCGTTGAAGAT+CGG + chr3_4:78424679-78424698 None:intergenic 45.0%
! CTGGCACTTTTCAGTTAACC+TGG - chr3_4:78425281-78425300 Msa0524890:CDS 45.0%
CCAAACATGCTCATTCTACC+GGG + chr3_4:78425383-78425402 None:intergenic 45.0%
ACTTCTTGTGATATGGGGAC+TGG - chr3_4:78425406-78425425 Msa0524890:CDS 45.0%
!! ATATGGGGACTGGTCAAAGA+AGG - chr3_4:78425416-78425435 Msa0524890:CDS 45.0%
TTCGCAGGATCGGTATTTAC+TGG + chr3_4:78425455-78425474 None:intergenic 45.0%
ATAGACAGCTTTCGCAGGAT+CGG + chr3_4:78425465-78425484 None:intergenic 45.0%
TAGACATAGACAGCTTTCGC+AGG + chr3_4:78425470-78425489 None:intergenic 45.0%
TGTCTATGTCTACCCGACAA+TGG - chr3_4:78425478-78425497 Msa0524890:intron 45.0%
TCATGGCAAACACCATTGTC+GGG + chr3_4:78425493-78425512 None:intergenic 45.0%
GAAAAAGGTTACTGCTAGGG+CGG - chr3_4:78425544-78425563 Msa0524890:intron 45.0%
TAAGAGGTTTAGCAGTGGAC+CGG + chr3_4:78425577-78425596 None:intergenic 45.0%
GCTCTTAAGAGGTTTAGCAG+TGG + chr3_4:78425582-78425601 None:intergenic 45.0%
!!! TTAATTAAGTTTTTTTTTTT+TGG - chr3_4:78424921-78424940 Msa0524890:intron 5.0%
!!! TTAATTAAGTTTTTTTTTTT+TGG - chr3_4:78424921-78424940 Msa0524890:intron 5.0%
GTTGTGTGCCAACAGGAACA+GGG + chr3_4:78424195-78424214 None:intergenic 50.0%
AGTTGTGTGCCAACAGGAAC+AGG + chr3_4:78424196-78424215 None:intergenic 50.0%
TGTTCCTGTTGGCACACAAC+TGG - chr3_4:78424195-78424214 Msa0524890:three_prime_UTR 50.0%
GTTCCTGTTGGCACACAACT+GGG - chr3_4:78424196-78424215 Msa0524890:three_prime_UTR 50.0%
GCACACAACTGGGAAGAAGT+TGG - chr3_4:78424206-78424225 Msa0524890:three_prime_UTR 50.0%
GATCAGATGCTTCTCGACGA+TGG + chr3_4:78424234-78424253 None:intergenic 50.0%
CATCACCTTCATCCAAGGGA+TGG - chr3_4:78424298-78424317 Msa0524890:three_prime_UTR 50.0%
! GGCCATTTAAAGCAGCACCA+GGG + chr3_4:78424572-78424591 None:intergenic 50.0%
! AGGCCATTTAAAGCAGCACC+AGG + chr3_4:78424573-78424592 None:intergenic 50.0%
AACCGATCTTCAACGCTTGG+AGG - chr3_4:78424674-78424693 Msa0524890:intron 50.0%
AAGTGCCAGCATAGACCTGA+TGG + chr3_4:78425270-78425289 None:intergenic 50.0%
CTGCAAAGTAGCTTCCTGCA+AGG + chr3_4:78425331-78425350 None:intergenic 50.0%
! GGAAGCTACTTTGCAGTAGC+AGG - chr3_4:78425335-78425354 Msa0524890:CDS 50.0%
CCCGGTAGAATGAGCATGTT+TGG - chr3_4:78425380-78425399 Msa0524890:CDS 50.0%
GTTGTGTGCCAACAGGAACA+GGG + chr3_4:78424195-78424214 None:intergenic 50.0%
AGTTGTGTGCCAACAGGAAC+AGG + chr3_4:78424196-78424215 None:intergenic 50.0%
TGTTCCTGTTGGCACACAAC+TGG - chr3_4:78424195-78424214 Msa0524890:three_prime_UTR 50.0%
GTTCCTGTTGGCACACAACT+GGG - chr3_4:78424196-78424215 Msa0524890:three_prime_UTR 50.0%
GCACACAACTGGGAAGAAGT+TGG - chr3_4:78424206-78424225 Msa0524890:three_prime_UTR 50.0%
GATCAGATGCTTCTCGACGA+TGG + chr3_4:78424234-78424253 None:intergenic 50.0%
CATCACCTTCATCCAAGGGA+TGG - chr3_4:78424298-78424317 Msa0524890:three_prime_UTR 50.0%
! GGCCATTTAAAGCAGCACCA+GGG + chr3_4:78424572-78424591 None:intergenic 50.0%
! AGGCCATTTAAAGCAGCACC+AGG + chr3_4:78424573-78424592 None:intergenic 50.0%
AACCGATCTTCAACGCTTGG+AGG - chr3_4:78424674-78424693 Msa0524890:intron 50.0%
AAGTGCCAGCATAGACCTGA+TGG + chr3_4:78425270-78425289 None:intergenic 50.0%
CTGCAAAGTAGCTTCCTGCA+AGG + chr3_4:78425331-78425350 None:intergenic 50.0%
! GGAAGCTACTTTGCAGTAGC+AGG - chr3_4:78425335-78425354 Msa0524890:CDS 50.0%
CCCGGTAGAATGAGCATGTT+TGG - chr3_4:78425380-78425399 Msa0524890:CDS 50.0%
CTTCCCAGTTGTGTGCCAAC+AGG + chr3_4:78424202-78424221 None:intergenic 55.0%
GTAGATGCGTGCTGCGATTG+AGG + chr3_4:78424331-78424350 None:intergenic 55.0%
!! GCAGTAGCAGGAGCACTTGT+TGG - chr3_4:78425347-78425366 Msa0524890:CDS 55.0%
TTTAGCAGTGGACCGGACAG+GGG + chr3_4:78425570-78425589 None:intergenic 55.0%
GTTTAGCAGTGGACCGGACA+GGG + chr3_4:78425571-78425590 None:intergenic 55.0%
CTTCCCAGTTGTGTGCCAAC+AGG + chr3_4:78424202-78424221 None:intergenic 55.0%
GTAGATGCGTGCTGCGATTG+AGG + chr3_4:78424331-78424350 None:intergenic 55.0%
!! GCAGTAGCAGGAGCACTTGT+TGG - chr3_4:78425347-78425366 Msa0524890:CDS 55.0%
TTTAGCAGTGGACCGGACAG+GGG + chr3_4:78425570-78425589 None:intergenic 55.0%
GTTTAGCAGTGGACCGGACA+GGG + chr3_4:78425571-78425590 None:intergenic 55.0%
TGGGGACACCCTGTTCCTGT+TGG - chr3_4:78424184-78424203 Msa0524890:three_prime_UTR 60.0%
GGTTTAGCAGTGGACCGGAC+AGG + chr3_4:78425572-78425591 None:intergenic 60.0%
TGGGGACACCCTGTTCCTGT+TGG - chr3_4:78424184-78424203 Msa0524890:three_prime_UTR 60.0%
GGTTTAGCAGTGGACCGGAC+AGG + chr3_4:78425572-78425591 None:intergenic 60.0%
CTGCTAGGGCGGCCCCTGTC+CGG - chr3_4:78425555-78425574 Msa0524890:intron 75.0%
CTGCTAGGGCGGCCCCTGTC+CGG - chr3_4:78425555-78425574 Msa0524890:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78424174 78425776 78424174 ID=Msa0524890;Name=Msa0524890
chr3_4 mRNA 78424174 78425776 78424174 ID=Msa0524890-mRNA-1;Parent=Msa0524890;Name=Msa0524890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=96|1|1|1|1|1|3|151|215
chr3_4 exon 78424174 78424624 78424174 ID=Msa0524890-mRNA-1:exon:23268;Parent=Msa0524890-mRNA-1
chr3_4 exon 78425255 78425486 78425255 ID=Msa0524890-mRNA-1:exon:23267;Parent=Msa0524890-mRNA-1
chr3_4 exon 78425565 78425776 78425565 ID=Msa0524890-mRNA-1:exon:23266;Parent=Msa0524890-mRNA-1
chr3_4 five_prime_UTR 78425681 78425776 78425681 ID=Msa0524890-mRNA-1:five_prime_utr;Parent=Msa0524890-mRNA-1
chr3_4 CDS 78425565 78425680 78425565 ID=Msa0524890-mRNA-1:cds;Parent=Msa0524890-mRNA-1
chr3_4 CDS 78425255 78425486 78425255 ID=Msa0524890-mRNA-1:cds;Parent=Msa0524890-mRNA-1
chr3_4 CDS 78424325 78424624 78424325 ID=Msa0524890-mRNA-1:cds;Parent=Msa0524890-mRNA-1
chr3_4 three_prime_UTR 78424174 78424324 78424174 ID=Msa0524890-mRNA-1:three_prime_utr;Parent=Msa0524890-mRNA-1
Gene Sequence

>Msa0524890

ATGGCAACACAAGTTGTATCTTCGAAATCATCACCTTCATCCAAGGGATGGAACATTTCCTCAATCGCAGCACGCATCTACCTACTCATCATCATCTTCCAAGTCCCTCTTTTCAGGGTTACATGCAGATCTGGTTTGTGCACAACCCCTTTACATGTAACATCATCACAGTTAGTTGCAAGTGATGTATTTCCTGTTCCACTTGTAAAGGGTCTTTTGTACCCTGGTGCTGCTTTAAATGGCCTCATCCACAACATGACTGTTCCTAGTTGGGATAGTTTGTTGGATTTGTATAATTTGACCACTATCAAGGAAGCTTCTGCAGTAACCGATCTTCAACGCTTGGAGGTCCTTGCAGGAAGCTACTTTGCAGTAGCAGGAGCACTTGTTGGTATTCTGAAACCCGGTAGAATGAGCATGTTTGGATCACTTCTTGTGATATGGGGACTGGTCAAAGAAGGAATTTTAGGAAAGCCAGTAAATACCGATCCTGCGAAAGCTGTCTATGTCTACCCGACAATGGTGTTTGCCATGATATGTGCCTTCTTGTCTGTAAAGTATGATATGAAAAAGGTTACTGCTAGGGCGGCCCCTGTCCGGTCCACTGCTAAACCTCTTAAGAGCTCATCAAAGTCTAAGCTGAAATAA

Protein sequence

>Msa0524890

MATQVVSSKSSPSSKGWNISSIAARIYLLIIIFQVPLFRVTCRSGLCTTPLHVTSSQLVASDVFPVPLVKGLLYPGAALNGLIHNMTVPSWDSLLDLYNLTTIKEASAVTDLQRLEVLAGSYFAVAGALVGILKPGRMSMFGSLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMVFAMICAFLSVKYDMKKVTARAAPVRSTAKPLKSSSKSKLK*