AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623370 MtrunA17_Chr4g0075081 97.059 646 19 0 1 646 1 646 0.0 1297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623370 AT4G28200.1 57.339 654 259 5 1 641 1 647 0.0 764

Find 164 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGACTTGCATAAAATTTA+AGG 0.072372 4_3:+567962 None:intergenic
ATATTGGGTTCTTCATCTTT+AGG 0.158287 4_3:+570147 None:intergenic
TATTGGGTTCTTCATCTTTA+GGG 0.188228 4_3:+570148 None:intergenic
GGAGATTTCTGTTCTTTCTT+TGG 0.205138 4_3:-567917 Msa0623370:CDS
TCAGCCATGGTTCACGGTTT+AGG 0.207464 4_3:+572445 None:intergenic
CAGTGCAGTTATGGGAATTA+AGG 0.210628 4_3:-569954 Msa0623370:CDS
CCTGAGGAATTAAAATTTCT+TGG 0.225012 4_3:+570539 None:intergenic
CAGCCATGGTTCACGGTTTA+GGG 0.248144 4_3:+572446 None:intergenic
ACTTGCTTTGAAGCGCTATA+AGG 0.277394 4_3:-572116 Msa0623370:CDS
GCAAGCCAGTCCCAGAATTC+TGG 0.277657 4_3:+570601 None:intergenic
TTTCAACCGAACCAGAATTC+TGG 0.284378 4_3:-570612 Msa0623370:CDS
TTGTTCTTCTTTGATTCATC+TGG 0.286830 4_3:+570811 None:intergenic
ATCCAAACTCCTGGAACCTT+TGG 0.310550 4_3:+571126 None:intergenic
ATTTGGTCAAAATTTGTCTA+AGG 0.312536 4_3:+569854 None:intergenic
ATGACCAAAATGTTGACTTT+TGG 0.312802 4_3:-567555 Msa0623370:CDS
CTCACCCAAGGCAACCTTCC+TGG 0.322100 4_3:+570954 None:intergenic
CACCATAGACAGTTCGAAAA+AGG 0.323080 4_3:+570761 None:intergenic
GATGAAGAACCCAATATAGA+TGG 0.325914 4_3:-570141 Msa0623370:CDS
AAGCTTTGCTACCAGTTTCC+TGG 0.328198 4_3:+569999 None:intergenic
CTTGCCAAAAGTCAACATTT+TGG 0.336551 4_3:+567551 None:intergenic
AGGCACTTGCAAATCTTGTT+AGG 0.337032 4_3:-571155 Msa0623370:CDS
GCCCAACATCAGAAGACCTT+TGG 0.346201 4_3:-571023 Msa0623370:CDS
CAACCCAGCGAAATCAGATT+TGG 0.346257 4_3:+572162 None:intergenic
ACCCAAAGGTTCCAGGAGTT+TGG 0.346506 4_3:-571128 Msa0623370:CDS
TTCCCCTGTATGTTTACTTA+AGG 0.346833 4_3:-567168 Msa0623370:three_prime_UTR
CTGATTTCGCTGGGTTGGTT+AGG 0.353723 4_3:-572156 Msa0623370:CDS
GTTCTTTCTTTGGCTAAAGA+TGG 0.356533 4_3:-567907 Msa0623370:CDS
TGTATGTTTACTTAAGGTAT+TGG 0.358051 4_3:-567162 Msa0623370:three_prime_UTR
AGGCCAGAGATATCTATAAA+AGG 0.360971 4_3:-567813 Msa0623370:intron
CCCAACATCAGAAGACCTTT+GGG 0.371717 4_3:-571022 Msa0623370:CDS
TGGTTCACGGTTTAGGGTTA+CGG 0.374197 4_3:+572452 None:intergenic
TGCAGATTCATATAATTTCC+TGG 0.375451 4_3:+567588 None:intergenic
TCGTGTCAAGTTGCATTTGT+AGG 0.377483 4_3:-567065 Msa0623370:three_prime_UTR
ATGACTTGCATAAAATTTAA+GGG 0.380249 4_3:+567963 None:intergenic
AGTGCAGTTATGGGAATTAA+GGG 0.388281 4_3:-569953 Msa0623370:CDS
AGCAAATTGAACTTAATTTG+TGG 0.399786 4_3:+567254 None:intergenic
TCAGGTGCAAAAGGCAATTC+AGG 0.402595 4_3:-570521 Msa0623370:intron
ATGTATGGCCCATCTATATT+GGG 0.405195 4_3:+570132 None:intergenic
TTCAACCGAACCAGAATTCT+GGG 0.405346 4_3:-570611 Msa0623370:CDS
AGGTTGCACCCAAAGGTTCC+AGG 0.405391 4_3:-571135 Msa0623370:CDS
TTTCTAAGATTGAGACTTGA+AGG 0.405456 4_3:+570721 None:intergenic
AACAAGCTACCGCTGTCTAT+TGG 0.405697 4_3:-567371 Msa0623370:CDS
CTTGCTTTGAAGCGCTATAA+GGG 0.406823 4_3:-572115 Msa0623370:CDS
ACATTTGCAGTTGAGACAAT+TGG 0.409596 4_3:-570028 Msa0623370:CDS
ACCTTTGGGTGGAGTATCTT+CGG 0.410834 4_3:-571008 Msa0623370:CDS
ATTGGATGAGGCCAGGAAAC+TGG 0.417782 4_3:-570010 Msa0623370:CDS
TATGTATGGCCCATCTATAT+TGG 0.420247 4_3:+570131 None:intergenic
AAATATTCCAAGAGATTGTT+CGG 0.420727 4_3:-572496 Msa0623370:five_prime_UTR
GGTTGCCTTGGGTGAGGATG+AGG 0.428184 4_3:-570947 Msa0623370:CDS
TTGCAGAATCAGTGCAGTTA+TGG 0.428214 4_3:-569963 Msa0623370:CDS
TCCAAACTCCTGGAACCTTT+GGG 0.430227 4_3:+571127 None:intergenic
CAGCCCTTTCATATATTGAC+AGG 0.434375 4_3:+570100 None:intergenic
GATGAGGCCGTGTCCGTTGA+AGG 0.435930 4_3:-572299 Msa0623370:CDS
TTTAATTCCTCAGGTGCAAA+AGG 0.436231 4_3:-570530 Msa0623370:CDS
TGCAGAATCAGTGCAGTTAT+GGG 0.443270 4_3:-569962 Msa0623370:CDS
AAATCCAAATCTGATTTCGC+TGG 0.444340 4_3:-572166 Msa0623370:CDS
GGATAACAAATCAGTATCAC+TGG 0.447213 4_3:+569888 None:intergenic
CCCAAAGGTCTTCTGATGTT+GGG 0.447510 4_3:+571022 None:intergenic
GCTTTGAAAAGTGTGCCTTC+AGG 0.451194 4_3:-570216 Msa0623370:CDS
ACCCAAAGGTCTTCTGATGT+TGG 0.461135 4_3:+571021 None:intergenic
GAAGCAAACCTTGCATCAAT+AGG 0.462444 4_3:-567634 Msa0623370:CDS
TTTGGATATATGCTGCAGCC+TGG 0.462693 4_3:-571110 Msa0623370:CDS
GGCTGCGCCGAACAATCTCT+TGG 0.465443 4_3:+572489 None:intergenic
TTTGTCTAAGGAGTTCGAAA+AGG 0.466162 4_3:+569866 None:intergenic
AATACCTTAAGTAAACATAC+AGG 0.467470 4_3:+567164 None:intergenic
TTGTCTCAACTGCAAATGTA+AGG 0.468804 4_3:+570032 None:intergenic
ATCAGAGAACTTGTGGCTAA+AGG 0.473103 4_3:-569818 Msa0623370:intron
ATAAGGGTGATATTCAACTT+TGG 0.475919 4_3:-572099 Msa0623370:CDS
AAAGATGGTGGTAGTGAAAG+TGG 0.479068 4_3:-567892 Msa0623370:CDS
GGCTGCCCGTGCTTTAATGC+AGG 0.480714 4_3:-571061 Msa0623370:CDS
CTTCCTATATAATGCAAGGC+CGG 0.481302 4_3:+567669 None:intergenic
GAAGGCCAGGAAGGTTGCCT+TGG 0.484452 4_3:-570959 Msa0623370:CDS
CACATACATTAACAAGTTGA+AGG 0.486769 4_3:-570977 Msa0623370:CDS
TCATGTGTATTCTTGTACAC+TGG 0.487050 4_3:-567116 Msa0623370:three_prime_UTR
CAAATCTGATTTCGCTGGGT+TGG 0.489760 4_3:-572161 Msa0623370:CDS
ACTATGTCAGCCATGGTTCA+CGG 0.492887 4_3:+572439 None:intergenic
CCAGTCCCAGAATTCTGGTT+CGG 0.497439 4_3:+570606 None:intergenic
ATCTCCTGTCAATATATGAA+AGG 0.498463 4_3:-570104 Msa0623370:CDS
TTGTCTAAGGAGTTCGAAAA+GGG 0.499749 4_3:+569867 None:intergenic
AAGGCCAGGAAGGTTGCCTT+GGG 0.501875 4_3:-570958 Msa0623370:CDS
TAGACGATACTTTGATAAGC+TGG 0.506350 4_3:-567941 Msa0623370:CDS
CCGCTGTCTATTGGCGTGCT+AGG 0.515561 4_3:-567362 Msa0623370:CDS
TTTCAAAATCAGAGAACTTG+TGG 0.516848 4_3:-569825 Msa0623370:CDS
TGAGACAATTGGATGAGGCC+AGG 0.517854 4_3:-570017 Msa0623370:CDS
TTCCTATATAATGCAAGGCC+GGG 0.518118 4_3:+567670 None:intergenic
GACAGGAGATGTGGTATGTA+TGG 0.519034 4_3:+570117 None:intergenic
AAAATAGTCTCGCAAATGCC+AGG 0.523648 4_3:-567606 Msa0623370:CDS
AAAGAATTATTTGCTGAGCA+TGG 0.524154 4_3:-570790 Msa0623370:CDS
ATCCCGGCCTTGCATTATAT+AGG 0.525127 4_3:-567672 Msa0623370:CDS
AATCCAAATCTGATTTCGCT+GGG 0.526420 4_3:-572165 Msa0623370:CDS
TCTCCTGTCAATATATGAAA+GGG 0.526427 4_3:-570103 Msa0623370:CDS
ATATGAAAGGGCTGAAAGCA+TGG 0.527334 4_3:-570091 Msa0623370:CDS
TGGGGAAGCAATAAATTCAC+TGG 0.533228 4_3:+567323 None:intergenic
CTTTCTTTGGCTAAAGATGG+TGG 0.535513 4_3:-567904 Msa0623370:CDS
ATTGGGTTCTTCATCTTTAG+GGG 0.537286 4_3:+570149 None:intergenic
TTCTAAGATTGAGACTTGAA+GGG 0.538562 4_3:+570722 None:intergenic
TTGGATATATGCTGCAGCCT+GGG 0.539070 4_3:-571109 Msa0623370:CDS
GCGCGTGAGTTGAAGAAACT+AGG 0.539826 4_3:-572205 Msa0623370:CDS
GCAGCATATATCCAAACTCC+TGG 0.541975 4_3:+571117 None:intergenic
AGTGAATCGTTTAATACGAA+AGG 0.542260 4_3:-567010 Msa0623370:three_prime_UTR
CAGGAAGGTTGCCTTGGGTG+AGG 0.542496 4_3:-570953 Msa0623370:CDS
GTATTGCACTATGTCAGCCA+TGG 0.543507 4_3:+572432 None:intergenic
CTACTATCGCATGGAGGTCA+AGG 0.543652 4_3:-567527 Msa0623370:intron
TTCGGCGCAGCCTCTGTCGA+CGG 0.546248 4_3:-572478 Msa0623370:five_prime_UTR
ACCTCCCTGCATTAAAGCAC+GGG 0.548301 4_3:+571056 None:intergenic
TCGATGCACTACGTAGGTTA+CGG 0.551001 4_3:-572240 Msa0623370:CDS
GCAGTTGAGACAATTGGATG+AGG 0.554938 4_3:-570022 Msa0623370:CDS
CGCGTGAGTTGAAGAAACTA+GGG 0.556936 4_3:-572204 Msa0623370:CDS
AGAGGCGGAAATTCGAGTAC+AGG 0.557613 4_3:-572324 Msa0623370:CDS
GACCTCCCTGCATTAAAGCA+CGG 0.559052 4_3:+571055 None:intergenic
ATATAGGAAGTGCATTGAGC+TGG 0.561780 4_3:-567656 Msa0623370:CDS
TATCTAGCTTTACCGCATCC+CGG 0.562125 4_3:-567688 Msa0623370:CDS
AGATACTGAACGACATGAAG+AGG 0.563350 4_3:-570639 Msa0623370:CDS
ACATTAACAAGTTGAAGGCC+AGG 0.564813 4_3:-570972 Msa0623370:CDS
ATGAAGAACCCAATATAGAT+GGG 0.565040 4_3:-570140 Msa0623370:CDS
TATGAAAGGGCTGAAAGCAT+GGG 0.567635 4_3:-570090 Msa0623370:CDS
AAGATTGAGACTTGAAGGGA+TGG 0.570301 4_3:+570726 None:intergenic
TCTTGTTAGGTTGCACCCAA+AGG 0.570444 4_3:-571142 Msa0623370:CDS
TGATCGTAACTTGAATGTTG+TGG 0.571370 4_3:-571082 Msa0623370:CDS
GACTCGTAATCCTAGAACTG+TGG 0.572997 4_3:-570917 Msa0623370:CDS
TTGAAGTATAAAACTAACAA+TGG 0.574024 4_3:+567852 None:intergenic
TCATATATTGACAGGAGATG+TGG 0.577193 4_3:+570108 None:intergenic
AAATCCTCCTTCAACGGACA+CGG 0.582690 4_3:+572292 None:intergenic
CCGAACCAGAATTCTGGGAC+TGG 0.583962 4_3:-570606 Msa0623370:CDS
TATAATGCAAGGCCGGGATG+CGG 0.586266 4_3:+567676 None:intergenic
TTTGTGGTCAAAATTGAACT+CGG 0.586361 4_3:+567270 None:intergenic
TGCACTTCCTATATAATGCA+AGG 0.587184 4_3:+567665 None:intergenic
TAACAAGTTGAAGGCCAGGA+AGG 0.590491 4_3:-570968 Msa0623370:CDS
TTGGGTGGAGTATCTTCGGA+TGG 0.594540 4_3:-571004 Msa0623370:CDS
AGTTCCAACCTCACTCGAGT+AGG 0.598568 4_3:+567190 None:intergenic
AATTCGAGTACAGGCTGATG+AGG 0.600197 4_3:-572315 Msa0623370:CDS
GCTACAAAATCCTCCTTCAA+CGG 0.606386 4_3:+572286 None:intergenic
TTGGCAAGACTACTATCGCA+TGG 0.606759 4_3:-567536 Msa0623370:CDS
AAACTAAACATAGTTCCTGA+AGG 0.616969 4_3:+570201 None:intergenic
GTTGCCTTGGGTGAGGATGA+GGG 0.618019 4_3:-570946 Msa0623370:CDS
CAAGTTACGATCAAACTCCC+AGG 0.624320 4_3:+571092 None:intergenic
GATACTGAACGACATGAAGA+GGG 0.627347 4_3:-570638 Msa0623370:CDS
GCTGCCCGTGCTTTAATGCA+GGG 0.630198 4_3:-571060 Msa0623370:CDS
GGCGCAGCCTCTGTCGACGG+TGG 0.631759 4_3:-572475 Msa0623370:five_prime_UTR
ACGATACTTTGATAAGCTGG+TGG 0.633401 4_3:-567938 Msa0623370:CDS
ATACCTTAAGTAAACATACA+GGG 0.635632 4_3:+567165 None:intergenic
AGTTCCCTCATCCTCACCCA+AGG 0.637079 4_3:+570942 None:intergenic
TGACATAGTGCAATACAAGC+TGG 0.643441 4_3:-572425 Msa0623370:CDS
GTTACGGCCACCGTCGACAG+AGG 0.644726 4_3:+572468 None:intergenic
TAACCCTAAACCGTGAACCA+TGG 0.645202 4_3:-572449 Msa0623370:exon
CTGGTAGCAAAGCTTTGCAG+CGG 0.649670 4_3:-569991 Msa0623370:CDS
TCCGAAGATACTCCACCCAA+AGG 0.653095 4_3:+571007 None:intergenic
GATAACAAATCAGTATCACT+GGG 0.657544 4_3:+569889 None:intergenic
AACATCAGAAGACCTTTGGG+TGG 0.663723 4_3:-571019 Msa0623370:CDS
GCCCGTGCTTTAATGCAGGG+AGG 0.670197 4_3:-571057 Msa0623370:CDS
TACCTTAAGTAAACATACAG+GGG 0.670796 4_3:+567166 None:intergenic
TGTAGGAATCATCAGAGTCG+CGG 0.672452 4_3:-567048 Msa0623370:three_prime_UTR
ACGAGATTGTTAAACAGAGG+CGG 0.673954 4_3:-572339 Msa0623370:CDS
GAGGCCGTGTCCGTTGAAGG+AGG 0.675188 4_3:-572296 Msa0623370:CDS
TTCGAAGATCTCGAGCAACG+TGG 0.678884 4_3:-572385 Msa0623370:CDS
TCAAAAGGATGGAATTCACA+AGG 0.680373 4_3:-567833 Msa0623370:CDS
TCGACGAGATTGTTAAACAG+AGG 0.689269 4_3:-572342 Msa0623370:CDS
ACGTAGGTTACGGAAGAAGT+CGG 0.692227 4_3:-572230 Msa0623370:CDS
AGGAATCATCAGAGTCGCGG+AGG 0.702938 4_3:-567045 Msa0623370:three_prime_UTR
CCTAGCACGCCAATAGACAG+CGG 0.706749 4_3:+567362 None:intergenic
ACATTACGAAGATATGTGCG+AGG 0.714205 4_3:-570662 Msa0623370:CDS
CGCAGCTCGATGCACTACGT+AGG 0.747048 4_3:-572246 Msa0623370:CDS
TAGGTTACGGAAGAAGTCGG+TGG 0.753853 4_3:-572227 Msa0623370:CDS
GCAAGACTACTATCGCATGG+AGG 0.758958 4_3:-567533 Msa0623370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTTAAATTTTTAC+AGG - chr4_3:568304-568323 Msa0623370:intron 10.0%
!! ATAATTAATAACAGAATTTA+GGG + chr4_3:571370-571389 None:intergenic 10.0%
!! TACATATTAGAAATTAAACT+TGG + chr4_3:568219-568238 None:intergenic 15.0%
!!! AAAGAGATTTTTTGAAATAT+TGG - chr4_3:568778-568797 Msa0623370:intron 15.0%
!!! AATTAAACCTTTTTTTAAGA+TGG - chr4_3:571174-571193 Msa0623370:intron 15.0%
!! TAATTAATAACAGAATTTAG+GGG + chr4_3:571369-571388 None:intergenic 15.0%
!! CATAATTAATAACAGAATTT+AGG + chr4_3:571371-571390 None:intergenic 15.0%
!! TGAAAAATTATCATAAATCT+GGG + chr4_3:572178-572197 None:intergenic 15.0%
!! TTGAAAAATTATCATAAATC+TGG + chr4_3:572179-572198 None:intergenic 15.0%
!!! TTTTGTAGGGTTAAAAAAAA+TGG - chr4_3:567418-567437 Msa0623370:intron 20.0%
!!! ATTTGCTATAAAAATTGCTT+AGG + chr4_3:567616-567635 None:intergenic 20.0%
!!! TAAGCAATTTTTATAGCAAA+TGG - chr4_3:567615-567634 Msa0623370:CDS 20.0%
!!! ATAATAAGTTGAAAACAACT+TGG - chr4_3:567922-567941 Msa0623370:CDS 20.0%
!! TTTAAATTGTCAACACTATA+GGG + chr4_3:568001-568020 None:intergenic 20.0%
!! ATTTAAATTGTCAACACTAT+AGG + chr4_3:568002-568021 None:intergenic 20.0%
!!! GTTGACAATTTAAATTGTTT+TGG - chr4_3:568007-568026 Msa0623370:intron 20.0%
!! AATCAATAGATTTAAACTTG+AGG - chr4_3:568122-568141 Msa0623370:intron 20.0%
!! ATATGTAAAGCAAATAATTC+AGG - chr4_3:568232-568251 Msa0623370:intron 20.0%
!!! AGATTTTTTGAAATATTGGA+GGG - chr4_3:568782-568801 Msa0623370:intron 20.0%
!! TAGGAAAATTCATCATATTA+TGG - chr4_3:569078-569097 Msa0623370:intron 20.0%
!!! TATGGTTTTGTAATTTACTA+TGG - chr4_3:569096-569115 Msa0623370:intron 20.0%
!!! TTTGTATGCAAATTTTCTAA+TGG - chr4_3:569298-569317 Msa0623370:intron 20.0%
!!! TTGTATGCAAATTTTCTAAT+GGG - chr4_3:569299-569318 Msa0623370:intron 20.0%
!!! TGATTTTGAAACATGAAATT+TGG + chr4_3:569645-569664 None:intergenic 20.0%
!!! ATTTGTTTATTCCTTTTGAT+TGG + chr4_3:569743-569762 None:intergenic 20.0%
!!! TTTTTTTTAAATAACCACTC+TGG - chr4_3:570998-571017 Msa0623370:CDS 20.0%
!! TCAAAATCCATCTTAAAAAA+AGG + chr4_3:571184-571203 None:intergenic 20.0%
!! CTTTAAATACATACAATTCA+AGG + chr4_3:571307-571326 None:intergenic 20.0%
!! AATTAATAACAGAATTTAGG+GGG + chr4_3:571368-571387 None:intergenic 20.0%
!! AACACTATACAAAATAATTC+AGG + chr4_3:571442-571461 None:intergenic 20.0%
!!! ATGACTTGCATAAAATTTAA+GGG + chr4_3:571519-571538 None:intergenic 20.0%
!!! TATGACTTGCATAAAATTTA+AGG + chr4_3:571520-571539 None:intergenic 20.0%
!! TTGAAGTATAAAACTAACAA+TGG + chr4_3:571630-571649 None:intergenic 20.0%
!!! TGTTAGTTTTATACTTCAAA+AGG - chr4_3:571631-571650 Msa0623370:intron 20.0%
!!! TTTAGTTTTCAATTACTTGT+TGG - chr4_3:571993-572012 Msa0623370:intron 20.0%
!! ATTTGATTGATAAATTATCC+AGG + chr4_3:572031-572050 None:intergenic 20.0%
!!! TGCATATATACCTTTTTTTT+TGG - chr4_3:572058-572077 Msa0623370:CDS 20.0%
!! AAGATCAAAACCAAAAAAAA+AGG + chr4_3:572071-572090 None:intergenic 20.0%
!! GAAAAATTATCATAAATCTG+GGG + chr4_3:572177-572196 None:intergenic 20.0%
!!! TAATACGAAAGGAAAATTTT+AGG - chr4_3:572480-572499 Msa0623370:five_prime_UTR 20.0%
!!! AATACGAAAGGAAAATTTTA+GGG - chr4_3:572481-572500 Msa0623370:five_prime_UTR 20.0%
! AAATATTCCAAGAGATTGTT+CGG - chr4_3:566983-567002 Msa0623370:three_prime_UTR 25.0%
! ATGATAAGTGTTTATGCTAT+AGG + chr4_3:567829-567848 None:intergenic 25.0%
! CTTATTATTATAAGCTCTCT+AGG + chr4_3:567910-567929 None:intergenic 25.0%
!!! GACAATTTAAATTGTTTTGG+TGG - chr4_3:568010-568029 Msa0623370:intron 25.0%
! AATTCAGGCACTAAAATATT+TGG - chr4_3:568247-568266 Msa0623370:intron 25.0%
! ATTCAGGCACTAAAATATTT+GGG - chr4_3:568248-568267 Msa0623370:intron 25.0%
!!! GAGATTTTTTGAAATATTGG+AGG - chr4_3:568781-568800 Msa0623370:intron 25.0%
!! CTTTTCCTTTATGTGTTTTA+TGG - chr4_3:569022-569041 Msa0623370:intron 25.0%
!!! ATGATTTGTTGGATCAATAT+AGG + chr4_3:569205-569224 None:intergenic 25.0%
! ATATTGATCCAACAAATCAT+TGG - chr4_3:569205-569224 Msa0623370:intron 25.0%
! TATTGATCCAACAAATCATT+GGG - chr4_3:569206-569225 Msa0623370:intron 25.0%
! ATTTGGTCAAAATTTGTCTA+AGG + chr4_3:569628-569647 None:intergenic 25.0%
! CAACAAAAATAAGAGATAAG+TGG + chr4_3:569697-569716 None:intergenic 25.0%
! ACTAATAATAGATCTGTGAT+GGG - chr4_3:569816-569835 Msa0623370:intron 25.0%
!! AATACATTTAGTCTTCAACT+GGG + chr4_3:569948-569967 None:intergenic 25.0%
! AAATCACAATTGAGAAACTA+GGG + chr4_3:570007-570026 None:intergenic 25.0%
! AAAATCACAATTGAGAAACT+AGG + chr4_3:570008-570027 None:intergenic 25.0%
!! TAGTTTCTCAATTGTGATTT+TGG - chr4_3:570007-570026 Msa0623370:CDS 25.0%
! ATAAGTTAAAATCTGAGTGT+TGG + chr4_3:570046-570065 None:intergenic 25.0%
!!! GTTGAACATGTTTCATTTTT+TGG + chr4_3:570208-570227 None:intergenic 25.0%
! AAATGAAACATGTTCAACAT+TGG - chr4_3:570210-570229 Msa0623370:CDS 25.0%
! CTGAAATATATCTATCAATG+AGG - chr4_3:570367-570386 Msa0623370:intron 25.0%
! TAGTGGTAAATATTAACTTC+AGG - chr4_3:570682-570701 Msa0623370:CDS 25.0%
! AACAAAAAAACGTTCAACAA+TGG + chr4_3:570916-570935 None:intergenic 25.0%
! AATCAAAAAGAGATCAAATG+TGG - chr4_3:571095-571114 Msa0623370:CDS 25.0%
! ATCAAAAAGAGATCAAATGT+GGG - chr4_3:571096-571115 Msa0623370:CDS 25.0%
! ATACAAAATAATTCAGGTGA+AGG + chr4_3:571436-571455 None:intergenic 25.0%
! TTAGAGAGATGAACAAATTT+AGG + chr4_3:571479-571498 None:intergenic 25.0%
!!! AGTTTTATACTTCAAAAGGA+TGG - chr4_3:571635-571654 Msa0623370:intron 25.0%
!! ATACCTTTTATAGATATCTC+TGG + chr4_3:571672-571691 None:intergenic 25.0%
!! AGCAAATTGAACTTAATTTG+TGG + chr4_3:572228-572247 None:intergenic 25.0%
! ATACCTTAAGTAAACATACA+GGG + chr4_3:572317-572336 None:intergenic 25.0%
! AATACCTTAAGTAAACATAC+AGG + chr4_3:572318-572337 None:intergenic 25.0%
! TGTATGTTTACTTAAGGTAT+TGG - chr4_3:572317-572336 Msa0623370:CDS 25.0%
!!! AAAGGAAAATTTTAGGGTAA+TGG - chr4_3:572487-572506 Msa0623370:five_prime_UTR 25.0%
ATAAGGGTGATATTCAACTT+TGG - chr4_3:567380-567399 Msa0623370:CDS 30.0%
!! TTCGTTATCTTGAGTTTTGT+AGG - chr4_3:567404-567423 Msa0623370:intron 30.0%
!! TCGTTATCTTGAGTTTTGTA+GGG - chr4_3:567405-567424 Msa0623370:intron 30.0%
AAAAAATGGCAGAATGAAGA+AGG - chr4_3:567432-567451 Msa0623370:intron 30.0%
TTATTTGTAGCTTATAGCAC+AGG - chr4_3:567556-567575 Msa0623370:CDS 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr4_3:567768-567787 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr4_3:567769-567788 None:intergenic 30.0%
!!! AAATTGTTTTGGTGGTACTA+TGG - chr4_3:568018-568037 Msa0623370:intron 30.0%
CTATGGTAGAATATGATTGT+AGG - chr4_3:568035-568054 Msa0623370:intron 30.0%
TTCAATAATCTATAACCTGC+TGG + chr4_3:568190-568209 None:intergenic 30.0%
GCAGGTTATAGATTATTGAA+AGG - chr4_3:568190-568209 Msa0623370:intron 30.0%
GGTTATAGATTATTGAAAGG+TGG - chr4_3:568193-568212 Msa0623370:intron 30.0%
! CACATACATTAACAAGTTGA+AGG - chr4_3:568502-568521 Msa0623370:intron 30.0%
!! GTTTTCCTCTTTTTCATCAA+GGG + chr4_3:568630-568649 None:intergenic 30.0%
TTGTTCTTCTTTGATTCATC+TGG + chr4_3:568671-568690 None:intergenic 30.0%
! AAAGAATTATTTGCTGAGCA+TGG - chr4_3:568689-568708 Msa0623370:intron 30.0%
!! TTCTAAGATTGAGACTTGAA+GGG + chr4_3:568760-568779 None:intergenic 30.0%
!! TTTCTAAGATTGAGACTTGA+AGG + chr4_3:568761-568780 None:intergenic 30.0%
CCTGAGGAATTAAAATTTCT+TGG + chr4_3:568943-568962 None:intergenic 30.0%
!!! CCAAGAAATTTTAATTCCTC+AGG - chr4_3:568940-568959 Msa0623370:intron 30.0%
! TTCCTTTATGTGTTTTATGG+TGG - chr4_3:569025-569044 Msa0623370:intron 30.0%
GAATGCTTTAACATGAAACT+AGG - chr4_3:569059-569078 Msa0623370:intron 30.0%
TACTTAAACACGGGAAAAAT+GGG + chr4_3:569125-569144 None:intergenic 30.0%
ATACTTAAACACGGGAAAAA+TGG + chr4_3:569126-569145 None:intergenic 30.0%
! TTTTCCCGTGTTTAAGTATT+AGG - chr4_3:569127-569146 Msa0623370:intron 30.0%
ACCATCCTAATACTTAAACA+CGG + chr4_3:569135-569154 None:intergenic 30.0%
TATTAGGATGGTTAGATAGA+GGG - chr4_3:569143-569162 Msa0623370:intron 30.0%
AAACTAAACATAGTTCCTGA+AGG + chr4_3:569281-569300 None:intergenic 30.0%
TATTGGGTTCTTCATCTTTA+GGG + chr4_3:569334-569353 None:intergenic 30.0%
ATATTGGGTTCTTCATCTTT+AGG + chr4_3:569335-569354 None:intergenic 30.0%
ATGAAGAACCCAATATAGAT+GGG - chr4_3:569339-569358 Msa0623370:intron 30.0%
ATCTCCTGTCAATATATGAA+AGG - chr4_3:569375-569394 Msa0623370:intron 30.0%
TCTCCTGTCAATATATGAAA+GGG - chr4_3:569376-569395 Msa0623370:intron 30.0%
GATAACAAATCAGTATCACT+GGG + chr4_3:569593-569612 None:intergenic 30.0%
TTTCAAAATCAGAGAACTTG+TGG - chr4_3:569654-569673 Msa0623370:intron 30.0%
! AGCACATTTTATACAAGACA+TGG + chr4_3:569720-569739 None:intergenic 30.0%
TAAAATGTGCTCCAATCAAA+AGG - chr4_3:569729-569748 Msa0623370:intron 30.0%
GACTAATAATAGATCTGTGA+TGG - chr4_3:569815-569834 Msa0623370:intron 30.0%
CTCAAAAATCCAATGATCAA+GGG + chr4_3:569867-569886 None:intergenic 30.0%
TAAGTCAGGTAATTCTATAC+GGG + chr4_3:569896-569915 None:intergenic 30.0%
GTAAGTCAGGTAATTCTATA+CGG + chr4_3:569897-569916 None:intergenic 30.0%
CATAGGTAAAAAAGTAAGTC+AGG + chr4_3:569910-569929 None:intergenic 30.0%
!!! CTGACTTACTTTTTTACCTA+TGG - chr4_3:569908-569927 Msa0623370:CDS 30.0%
! CAATACATTTAGTCTTCAAC+TGG + chr4_3:569949-569968 None:intergenic 30.0%
AATCACAATTGAGAAACTAG+GGG + chr4_3:570006-570025 None:intergenic 30.0%
!!! TTTTTTAAAATGCCCACTCT+GGG + chr4_3:570113-570132 None:intergenic 30.0%
!!! ATTTTTTAAAATGCCCACTC+TGG + chr4_3:570114-570133 None:intergenic 30.0%
TCCAGAGAAATATATAGATG+AGG - chr4_3:570401-570420 Msa0623370:intron 30.0%
CCAGAGAAATATATAGATGA+GGG - chr4_3:570402-570421 Msa0623370:intron 30.0%
CAGAGAAATATATAGATGAG+GGG - chr4_3:570403-570422 Msa0623370:intron 30.0%
TGGTAAATATTAACTTCAGG+AGG + chr4_3:570685-570704 None:intergenic 30.0%
GAGTGGTAAATATTAACTTC+AGG + chr4_3:570441-570460 None:intergenic 30.0%
TGGTAAATATTAACTTCAGG+AGG - chr4_3:570685-570704 Msa0623370:CDS 30.0%
CCAGAGAAATATATAGATGA+GGG + chr4_3:570402-570421 None:intergenic 30.0%
TCCAGAGAAATATATAGATG+AGG + chr4_3:570401-570420 None:intergenic 30.0%
TCAAAAAGAGATCAAATGTG+GGG - chr4_3:571097-571116 Msa0623370:CDS 30.0%
! ATTTTCCATAGTATGCTGTA+TGG - chr4_3:571718-571737 Msa0623370:intron 30.0%
! TTTTCCATAGTATGCTGTAT+GGG - chr4_3:571719-571738 Msa0623370:intron 30.0%
! TTTTATCTCCTATTGATGCA+AGG + chr4_3:571856-571875 None:intergenic 30.0%
TGCAGATTCATATAATTTCC+TGG + chr4_3:571894-571913 None:intergenic 30.0%
!!! ATGACCAAAATGTTGACTTT+TGG - chr4_3:571924-571943 Msa0623370:intron 30.0%
TTTGTGGTCAAAATTGAACT+CGG + chr4_3:572212-572231 None:intergenic 30.0%
TACCTTAAGTAAACATACAG+GGG + chr4_3:572316-572335 None:intergenic 30.0%
CATTCAAAAAACTCAGTATC+TGG + chr4_3:572391-572410 None:intergenic 30.0%
AGTGAATCGTTTAATACGAA+AGG - chr4_3:572469-572488 Msa0623370:five_prime_UTR 30.0%
AAATCCAAATCTGATTTCGC+TGG - chr4_3:567313-567332 Msa0623370:exon 35.0%
AATCCAAATCTGATTTCGCT+GGG - chr4_3:567314-567333 Msa0623370:CDS 35.0%
GCTGTTATCATAAGCTATCT+TGG - chr4_3:567679-567698 Msa0623370:CDS 35.0%
TCAAATAAGCAGATCCAAAC+AGG - chr4_3:567803-567822 Msa0623370:intron 35.0%
TCTAGGAAAGCCTATGAAAA+CGG + chr4_3:567893-567912 None:intergenic 35.0%
ACTATAGGGTCTCTTTGAAT+TGG + chr4_3:567987-568006 None:intergenic 35.0%
TTGTGAAGGCTTAACTATTG+CGG + chr4_3:568159-568178 None:intergenic 35.0%
! GGCACTAAAATATTTGGGTT+TGG - chr4_3:568253-568272 Msa0623370:intron 35.0%
TGATCGTAACTTGAATGTTG+TGG - chr4_3:568397-568416 Msa0623370:intron 35.0%
! TGTTTTTCTTCCACAGTTCT+AGG + chr4_3:568575-568594 None:intergenic 35.0%
GAACTGTGGAAGAAAAACAA+TGG - chr4_3:568576-568595 Msa0623370:intron 35.0%
TATGACCCTTGATGAAAAAG+AGG - chr4_3:568622-568641 Msa0623370:intron 35.0%
!! CGTTTTCCTCTTTTTCATCA+AGG + chr4_3:568631-568650 None:intergenic 35.0%
!!! AACCTTTTTCGAACTGTCTA+TGG - chr4_3:568716-568735 Msa0623370:intron 35.0%
TTTAATTCCTCAGGTGCAAA+AGG - chr4_3:568949-568968 Msa0623370:intron 35.0%
CAATTCAGGTACGAATATGT+AGG - chr4_3:568972-568991 Msa0623370:intron 35.0%
TAGGATCTACTGAACTCATT+GGG - chr4_3:568991-569010 Msa0623370:intron 35.0%
AGCCACCATAAAACACATAA+AGG + chr4_3:569030-569049 None:intergenic 35.0%
CCATCCTAATACTTAAACAC+GGG + chr4_3:569134-569153 None:intergenic 35.0%
GTATTAGGATGGTTAGATAG+AGG - chr4_3:569142-569161 Msa0623370:intron 35.0%
CAATATAGGCGCAAGAAAAA+AGG + chr4_3:569191-569210 None:intergenic 35.0%
ATTGGGTTCTTCATCTTTAG+GGG + chr4_3:569333-569352 None:intergenic 35.0%
GATGAAGAACCCAATATAGA+TGG - chr4_3:569338-569357 Msa0623370:intron 35.0%
ATGTATGGCCCATCTATATT+GGG + chr4_3:569350-569369 None:intergenic 35.0%
TATGTATGGCCCATCTATAT+TGG + chr4_3:569351-569370 None:intergenic 35.0%
TCATATATTGACAGGAGATG+TGG + chr4_3:569374-569393 None:intergenic 35.0%
TTGTCTCAACTGCAAATGTA+AGG + chr4_3:569450-569469 None:intergenic 35.0%
ACATTTGCAGTTGAGACAAT+TGG - chr4_3:569451-569470 Msa0623370:intron 35.0%
AGTGCAGTTATGGGAATTAA+GGG - chr4_3:569526-569545 Msa0623370:intron 35.0%
GGATAACAAATCAGTATCAC+TGG + chr4_3:569594-569613 None:intergenic 35.0%
TTGTCTAAGGAGTTCGAAAA+GGG + chr4_3:569615-569634 None:intergenic 35.0%
TTTGTCTAAGGAGTTCGAAA+AGG + chr4_3:569616-569635 None:intergenic 35.0%
TCATATCTTGCATTTGCAAG+AGG + chr4_3:569797-569816 None:intergenic 35.0%
! GTCTTTTATCCCTTGATCAT+TGG - chr4_3:569855-569874 Msa0623370:CDS 35.0%
GCTCAAAAATCCAATGATCA+AGG + chr4_3:569868-569887 None:intergenic 35.0%
ATCACAATTGAGAAACTAGG+GGG + chr4_3:570005-570024 None:intergenic 35.0%
!! AGTTAAAATCTGAGTGTTGG+TGG + chr4_3:570043-570062 None:intergenic 35.0%
GCAGAAAACAAATCACAAGA+GGG + chr4_3:570169-570188 None:intergenic 35.0%
TGCAGAAAACAAATCACAAG+AGG + chr4_3:570170-570189 None:intergenic 35.0%
AATCTTGAGCTGGTTATCAA+AGG + chr4_3:570244-570263 None:intergenic 35.0%
AAGGATGTGATGTGAATGAA+AGG - chr4_3:570271-570290 Msa0623370:intron 35.0%
TGTGAATGAAAGGTTAACGA+AGG - chr4_3:570281-570300 Msa0623370:intron 35.0%
TTGTCTATCAATGAGGTTGA+TGG - chr4_3:570327-570346 Msa0623370:intron 35.0%
CCCTCATCTATATATTTCTC+TGG + chr4_3:570718-570737 None:intergenic 35.0%
ATATTAACTTCAGGAGGAGT+AGG + chr4_3:570691-570710 None:intergenic 35.0%
! TGCATTTGAAGTGGTTAACT+CGG + chr4_3:570610-570629 None:intergenic 35.0%
TGTTATAGCTGCATTTGAAG+TGG + chr4_3:570619-570638 None:intergenic 35.0%
TGTTTGAGAACAACACATAG+TGG - chr4_3:570665-570684 Msa0623370:CDS 35.0%
ATATTAACTTCAGGAGGAGT+AGG - chr4_3:570691-570710 Msa0623370:CDS 35.0%
CCCTCATCTATATATTTCTC+TGG - chr4_3:570718-570737 Msa0623370:CDS 35.0%
ACAATGCAAGCTCTTTCTAA+TGG - chr4_3:570777-570796 Msa0623370:CDS 35.0%
!! CAAGCTCTTTCTAATGGATT+TGG - chr4_3:570783-570802 Msa0623370:CDS 35.0%
AAGGATGTGATGTGAATGAA+CGG + chr4_3:570271-570290 None:intergenic 35.0%
GCTAAAGATTCAGAAGTTGA+AGG + chr4_3:570874-570893 None:intergenic 35.0%
TCAACTTCTGAATCTTTAGC+TGG - chr4_3:570874-570893 Msa0623370:CDS 35.0%
TTCAACAATGGAAGAGTCTT+GGG + chr4_3:570904-570923 None:intergenic 35.0%
!! GCAACGTGTTTTGTTCTTAT+TGG + chr4_3:571024-571043 None:intergenic 35.0%
TAATCCAGTCAAAATCTGAG+TGG - chr4_3:571063-571082 Msa0623370:CDS 35.0%
AATCCAGTCAAAATCTGAGT+GGG - chr4_3:571064-571083 Msa0623370:CDS 35.0%
CAAAAAGAGATCAAATGTGG+GGG - chr4_3:571098-571117 Msa0623370:CDS 35.0%
AAAAAGAGATCAAATGTGGG+GGG - chr4_3:571099-571118 Msa0623370:CDS 35.0%
! TAGCTTCAATTGAGCGATTT+TGG + chr4_3:571125-571144 None:intergenic 35.0%
! TTGCCATTTGAAACCAAAGT+TGG - chr4_3:571231-571250 Msa0623370:intron 35.0%
! ACACCAACTTTGGTTTCAAA+TGG + chr4_3:571237-571256 None:intergenic 35.0%
GGTGAAGGAAAACTAAATTC+AGG + chr4_3:571421-571440 None:intergenic 35.0%
CTCTAACTGTAACTCAATAC+AGG - chr4_3:571493-571512 Msa0623370:intron 35.0%
TAGACGATACTTTGATAAGC+TGG - chr4_3:571538-571557 Msa0623370:intron 35.0%
GGAGATTTCTGTTCTTTCTT+TGG - chr4_3:571562-571581 Msa0623370:intron 35.0%
GTTCTTTCTTTGGCTAAAGA+TGG - chr4_3:571572-571591 Msa0623370:intron 35.0%
TCAAAAGGATGGAATTCACA+AGG - chr4_3:571646-571665 Msa0623370:intron 35.0%
AGGCCAGAGATATCTATAAA+AGG - chr4_3:571666-571685 Msa0623370:intron 35.0%
! TCTATAAAAGGTATGAGCAG+TGG - chr4_3:571678-571697 Msa0623370:intron 35.0%
AAATCCCATACAGCATACTA+TGG + chr4_3:571726-571745 None:intergenic 35.0%
TCTGCAATGTAACATAGTTG+AGG + chr4_3:571771-571790 None:intergenic 35.0%
TGCACTTCCTATATAATGCA+AGG + chr4_3:571817-571836 None:intergenic 35.0%
! CTTGCCAAAAGTCAACATTT+TGG + chr4_3:571931-571950 None:intergenic 35.0%
! TGTTGGATTTCTTTTGTACC+TGG - chr4_3:572010-572029 Msa0623370:intron 35.0%
!!! TTTGGTTTTGATCTTGCAGA+TGG - chr4_3:572076-572095 Msa0623370:CDS 35.0%
!!! TTGGTTTTGATCTTGCAGAT+GGG - chr4_3:572077-572096 Msa0623370:CDS 35.0%
TTCCCCTGTATGTTTACTTA+AGG - chr4_3:572311-572330 Msa0623370:CDS 35.0%
TCATGTGTATTCTTGTACAC+TGG - chr4_3:572363-572382 Msa0623370:CDS 35.0%
TGACATAGTGCAATACAAGC+TGG - chr4_3:567054-567073 Msa0623370:three_prime_UTR 40.0%
TCGACGAGATTGTTAAACAG+AGG - chr4_3:567137-567156 Msa0623370:three_prime_UTR 40.0%
ACGAGATTGTTAAACAGAGG+CGG - chr4_3:567140-567159 Msa0623370:three_prime_UTR 40.0%
GCTACAAAATCCTCCTTCAA+CGG + chr4_3:567196-567215 None:intergenic 40.0%
!! ACTTGCTTTGAAGCGCTATA+AGG - chr4_3:567363-567382 Msa0623370:CDS 40.0%
!! CTTGCTTTGAAGCGCTATAA+GGG - chr4_3:567364-567383 Msa0623370:CDS 40.0%
! GCTTGTGCTATAAGCTGTTT+TGG - chr4_3:567525-567544 Msa0623370:intron 40.0%
GTTTATGCTATAGGCCTGTT+TGG + chr4_3:567820-567839 None:intergenic 40.0%
!! AATCTGCAAGCCGTTTTCAT+AGG - chr4_3:567880-567899 Msa0623370:CDS 40.0%
!! TGCTGGAATGAGTTTTGTGA+AGG + chr4_3:568173-568192 None:intergenic 40.0%
TTCACAAAACTCATTCCAGC+AGG - chr4_3:568172-568191 Msa0623370:intron 40.0%
AGGCACTTGCAAATCTTGTT+AGG - chr4_3:568324-568343 Msa0623370:intron 40.0%
! ACATTAACAAGTTGAAGGCC+AGG - chr4_3:568507-568526 Msa0623370:intron 40.0%
CACCATAGACAGTTCGAAAA+AGG + chr4_3:568721-568740 None:intergenic 40.0%
!!! CTTTTTCGAACTGTCTATGG+TGG - chr4_3:568719-568738 Msa0623370:intron 40.0%
AAGATTGAGACTTGAAGGGA+TGG + chr4_3:568756-568775 None:intergenic 40.0%
ACATTACGAAGATATGTGCG+AGG - chr4_3:568817-568836 Msa0623370:intron 40.0%
AGATACTGAACGACATGAAG+AGG - chr4_3:568840-568859 Msa0623370:intron 40.0%
GATACTGAACGACATGAAGA+GGG - chr4_3:568841-568860 Msa0623370:intron 40.0%
TTTCAACCGAACCAGAATTC+TGG - chr4_3:568867-568886 Msa0623370:intron 40.0%
TTCAACCGAACCAGAATTCT+GGG - chr4_3:568868-568887 Msa0623370:intron 40.0%
GTAGGATCTACTGAACTCAT+TGG - chr4_3:568990-569009 Msa0623370:intron 40.0%
CCCGTGTTTAAGTATTAGGA+TGG - chr4_3:569131-569150 Msa0623370:intron 40.0%
TATAGGCGCAAGAAAAAAGG+AGG + chr4_3:569188-569207 None:intergenic 40.0%
TCCAACAAATCATTGGGTTC+TGG - chr4_3:569212-569231 Msa0623370:intron 40.0%
CAGCCCTTTCATATATTGAC+AGG + chr4_3:569382-569401 None:intergenic 40.0%
ATATGAAAGGGCTGAAAGCA+TGG - chr4_3:569388-569407 Msa0623370:intron 40.0%
! TATGAAAGGGCTGAAAGCAT+GGG - chr4_3:569389-569408 Msa0623370:intron 40.0%
TTGCAGAATCAGTGCAGTTA+TGG - chr4_3:569516-569535 Msa0623370:intron 40.0%
TGCAGAATCAGTGCAGTTAT+GGG - chr4_3:569517-569536 Msa0623370:intron 40.0%
CAGTGCAGTTATGGGAATTA+AGG - chr4_3:569525-569544 Msa0623370:intron 40.0%
ATCAGAGAACTTGTGGCTAA+AGG - chr4_3:569661-569680 Msa0623370:intron 40.0%
TCAAGGGATAAAAGACAACC+AGG + chr4_3:569851-569870 None:intergenic 40.0%
!! TCTTCAACTGGGAAAGCATT+CGG + chr4_3:569937-569956 None:intergenic 40.0%
!! TAAAATCTGAGTGTTGGTGG+TGG + chr4_3:570040-570059 None:intergenic 40.0%
CTTCAACTTGAATCTTGAGC+TGG + chr4_3:570254-570273 None:intergenic 40.0%
!! CAGCTCAAGATTCAAGTTGA+AGG - chr4_3:570252-570271 Msa0623370:intron 40.0%
CTCTGCATTGTCTATCAATG+AGG - chr4_3:570320-570339 Msa0623370:intron 40.0%
TTGTCTGAGAAAACACAGAG+TGG + chr4_3:570458-570477 None:intergenic 40.0%
! TACATGGTTCTACGGTTTCT+TGG + chr4_3:570525-570544 None:intergenic 40.0%
CAATGAGGCTAATAGAAGAG+CGG + chr4_3:570753-570772 None:intergenic 40.0%
GCTTGCATTGTCTATCAATG+AGG + chr4_3:570768-570787 None:intergenic 40.0%
TTAACGAAGGCAAAGAAGCA+GGG + chr4_3:570832-570851 None:intergenic 40.0%
TGTGAATGAACGGTTAACGA+AGG + chr4_3:570845-570864 None:intergenic 40.0%
GTTCAACAATGGAAGAGTCT+TGG + chr4_3:570905-570924 None:intergenic 40.0%
TTTGTTCTTATTGGCCAGAG+TGG + chr4_3:571015-571034 None:intergenic 40.0%
ATCCAGTCAAAATCTGAGTG+GGG - chr4_3:571065-571084 Msa0623370:CDS 40.0%
ATCGCTCAATTGAAGCTAGA+AGG - chr4_3:571127-571146 Msa0623370:CDS 40.0%
TCGCTCAATTGAAGCTAGAA+GGG - chr4_3:571128-571147 Msa0623370:CDS 40.0%
CGAGAAACAAACACCAACTT+TGG + chr4_3:571247-571266 None:intergenic 40.0%
ACGATACTTTGATAAGCTGG+TGG - chr4_3:571541-571560 Msa0623370:intron 40.0%
CTTTCTTTGGCTAAAGATGG+TGG - chr4_3:571575-571594 Msa0623370:intron 40.0%
! AAAGATGGTGGTAGTGAAAG+TGG - chr4_3:571587-571606 Msa0623370:intron 40.0%
TTCCTATATAATGCAAGGCC+GGG + chr4_3:571812-571831 None:intergenic 40.0%
CTTCCTATATAATGCAAGGC+CGG + chr4_3:571813-571832 None:intergenic 40.0%
! ATATAGGAAGTGCATTGAGC+TGG - chr4_3:571823-571842 Msa0623370:intron 40.0%
GAAGCAAACCTTGCATCAAT+AGG - chr4_3:571845-571864 Msa0623370:intron 40.0%
AAAATAGTCTCGCAAATGCC+AGG - chr4_3:571873-571892 Msa0623370:intron 40.0%
! TGGAGGTCAAGGTATTCAAT+TGG - chr4_3:571963-571982 Msa0623370:intron 40.0%
TGGGGAAGCAATAAATTCAC+TGG + chr4_3:572159-572178 None:intergenic 40.0%
! TCGTGTCAAGTTGCATTTGT+AGG - chr4_3:572414-572433 Msa0623370:CDS 40.0%
! TGGTTCACGGTTTAGGGTTA+CGG + chr4_3:567030-567049 None:intergenic 45.0%
TAACCCTAAACCGTGAACCA+TGG - chr4_3:567030-567049 Msa0623370:three_prime_UTR 45.0%
ACTATGTCAGCCATGGTTCA+CGG + chr4_3:567043-567062 None:intergenic 45.0%
GTATTGCACTATGTCAGCCA+TGG + chr4_3:567050-567069 None:intergenic 45.0%
AATTCGAGTACAGGCTGATG+AGG - chr4_3:567164-567183 Msa0623370:three_prime_UTR 45.0%
AAATCCTCCTTCAACGGACA+CGG + chr4_3:567190-567209 None:intergenic 45.0%
TCGATGCACTACGTAGGTTA+CGG - chr4_3:567239-567258 Msa0623370:three_prime_UTR 45.0%
ACGTAGGTTACGGAAGAAGT+CGG - chr4_3:567249-567268 Msa0623370:three_prime_UTR 45.0%
! CGCGTGAGTTGAAGAAACTA+GGG - chr4_3:567275-567294 Msa0623370:three_prime_UTR 45.0%
CAACCCAGCGAAATCAGATT+TGG + chr4_3:567320-567339 None:intergenic 45.0%
CAAATCTGATTTCGCTGGGT+TGG - chr4_3:567318-567337 Msa0623370:CDS 45.0%
! TCTTGTTAGGTTGCACCCAA+AGG - chr4_3:568337-568356 Msa0623370:intron 45.0%
TCCAAACTCCTGGAACCTTT+GGG + chr4_3:568355-568374 None:intergenic 45.0%
ATCCAAACTCCTGGAACCTT+TGG + chr4_3:568356-568375 None:intergenic 45.0%
GCAGCATATATCCAAACTCC+TGG + chr4_3:568365-568384 None:intergenic 45.0%
TTTGGATATATGCTGCAGCC+TGG - chr4_3:568369-568388 Msa0623370:intron 45.0%
TTGGATATATGCTGCAGCCT+GGG - chr4_3:568370-568389 Msa0623370:intron 45.0%
CAAGTTACGATCAAACTCCC+AGG + chr4_3:568390-568409 None:intergenic 45.0%
CCCAAAGGTCTTCTGATGTT+GGG + chr4_3:568460-568479 None:intergenic 45.0%
CCCAACATCAGAAGACCTTT+GGG - chr4_3:568457-568476 Msa0623370:intron 45.0%
ACCCAAAGGTCTTCTGATGT+TGG + chr4_3:568461-568480 None:intergenic 45.0%
AACATCAGAAGACCTTTGGG+TGG - chr4_3:568460-568479 Msa0623370:intron 45.0%
! ACCTTTGGGTGGAGTATCTT+CGG - chr4_3:568471-568490 Msa0623370:intron 45.0%
! TAACAAGTTGAAGGCCAGGA+AGG - chr4_3:568511-568530 Msa0623370:intron 45.0%
GACTCGTAATCCTAGAACTG+TGG - chr4_3:568562-568581 Msa0623370:intron 45.0%
! TGAATTGCCTTTTGCACCTG+AGG + chr4_3:568959-568978 None:intergenic 45.0%
TCAGGTGCAAAAGGCAATTC+AGG - chr4_3:568958-568977 Msa0623370:intron 45.0%
!! AGGAGGCACTGTAAAATGCT+TGG + chr4_3:569171-569190 None:intergenic 45.0%
! GCCAGAACCCAATGATTTGT+TGG + chr4_3:569216-569235 None:intergenic 45.0%
!! TTCTGGCTTTGATCTGTTGC+AGG - chr4_3:569229-569248 Msa0623370:intron 45.0%
!! GCTTTGAAAAGTGTGCCTTC+AGG - chr4_3:569263-569282 Msa0623370:intron 45.0%
GACAGGAGATGTGGTATGTA+TGG + chr4_3:569365-569384 None:intergenic 45.0%
GCAGTTGAGACAATTGGATG+AGG - chr4_3:569457-569476 Msa0623370:intron 45.0%
AAGCTTTGCTACCAGTTTCC+TGG + chr4_3:569483-569502 None:intergenic 45.0%
!! TGTGATGGGTTTAGAACACC+TGG - chr4_3:569830-569849 Msa0623370:CDS 45.0%
!! GGAAAGCATTCGGATACCAT+AGG + chr4_3:569927-569946 None:intergenic 45.0%
TTCATTCCTATTGCCCAGAG+TGG - chr4_3:570097-570116 Msa0623370:CDS 45.0%
TCATTCCTATTGCCCAGAGT+GGG - chr4_3:570098-570117 Msa0623370:CDS 45.0%
GTTAACGAAGGCAAGAAGCA+AGG - chr4_3:570293-570312 Msa0623370:intron 45.0%
TGTTGTAGTTGCGTCTGTTG+TGG - chr4_3:570478-570497 Msa0623370:intron 45.0%
! GACACACGTACATGGTTCTA+CGG + chr4_3:570533-570552 None:intergenic 45.0%
GTAGAACCATGTACGTGTGT+CGG - chr4_3:570532-570551 Msa0623370:CDS 45.0%
CAAAGAATGCAAAGGAACCG+TGG + chr4_3:570584-570603 None:intergenic 45.0%
CTCGGCAACAAAGAATGCAA+AGG + chr4_3:570592-570611 None:intergenic 45.0%
GTTAACGAAGGCAAAGAAGC+AGG + chr4_3:570833-570852 None:intergenic 45.0%
TCCAGTCAAAATCTGAGTGG+GGG - chr4_3:571066-571085 Msa0623370:CDS 45.0%
CGCTCAATTGAAGCTAGAAG+GGG - chr4_3:571129-571148 Msa0623370:CDS 45.0%
GGCCAAAATCGCACAATTGA+GGG - chr4_3:571150-571169 Msa0623370:CDS 45.0%
! TGCCCTCAATTGTGCGATTT+TGG + chr4_3:571155-571174 None:intergenic 45.0%
TATGAGCAGTGGAATCAGTG+CGG - chr4_3:571689-571708 Msa0623370:intron 45.0%
!! TATCTAGCTTTACCGCATCC+CGG - chr4_3:571791-571810 Msa0623370:intron 45.0%
ATCCCGGCCTTGCATTATAT+AGG - chr4_3:571807-571826 Msa0623370:intron 45.0%
AACAAGCTACCGCTGTCTAT+TGG - chr4_3:572108-572127 Msa0623370:CDS 45.0%
! GTGTTTTTCCTACTCGAGTG+AGG - chr4_3:572281-572300 Msa0623370:CDS 45.0%
! TTTTCCTACTCGAGTGAGGT+TGG - chr4_3:572285-572304 Msa0623370:CDS 45.0%
TGTAGGAATCATCAGAGTCG+CGG - chr4_3:572431-572450 Msa0623370:CDS 45.0%
CAGCCATGGTTCACGGTTTA+GGG + chr4_3:567036-567055 None:intergenic 50.0%
TCAGCCATGGTTCACGGTTT+AGG + chr4_3:567037-567056 None:intergenic 50.0%
TTCGAAGATCTCGAGCAACG+TGG - chr4_3:567094-567113 Msa0623370:three_prime_UTR 50.0%
AGAGGCGGAAATTCGAGTAC+AGG - chr4_3:567155-567174 Msa0623370:three_prime_UTR 50.0%
TAGGTTACGGAAGAAGTCGG+TGG - chr4_3:567252-567271 Msa0623370:three_prime_UTR 50.0%
! GCGCGTGAGTTGAAGAAACT+AGG - chr4_3:567274-567293 Msa0623370:three_prime_UTR 50.0%
!! CTGATTTCGCTGGGTTGGTT+AGG - chr4_3:567323-567342 Msa0623370:CDS 50.0%
ACCCAAAGGTTCCAGGAGTT+TGG - chr4_3:568351-568370 Msa0623370:intron 50.0%
ACCTCCCTGCATTAAAGCAC+GGG + chr4_3:568426-568445 None:intergenic 50.0%
GACCTCCCTGCATTAAAGCA+CGG + chr4_3:568427-568446 None:intergenic 50.0%
GCCCAACATCAGAAGACCTT+TGG - chr4_3:568456-568475 Msa0623370:intron 50.0%
TCCGAAGATACTCCACCCAA+AGG + chr4_3:568475-568494 None:intergenic 50.0%
! TTGGGTGGAGTATCTTCGGA+TGG - chr4_3:568475-568494 Msa0623370:intron 50.0%
! CCAGTCCCAGAATTCTGGTT+CGG + chr4_3:568876-568895 None:intergenic 50.0%
TGAGACAATTGGATGAGGCC+AGG - chr4_3:569462-569481 Msa0623370:intron 50.0%
ATTGGATGAGGCCAGGAAAC+TGG - chr4_3:569469-569488 Msa0623370:intron 50.0%
CTGGTAGCAAAGCTTTGCAG+CGG - chr4_3:569488-569507 Msa0623370:intron 50.0%
!! AATCTGAGTGTTGGTGGTGG+TGG + chr4_3:570037-570056 None:intergenic 50.0%
AAATGCCCACTCTGGGCAAT+AGG + chr4_3:570106-570125 None:intergenic 50.0%
TTGTGACCGACACACGTACA+TGG + chr4_3:570541-570560 None:intergenic 50.0%
CACAACATGAAACACGCGCA+TGG - chr4_3:570556-570575 Msa0623370:CDS 50.0%
!! TCCCCCACTCAGATTTTGAC+TGG + chr4_3:571070-571089 None:intergenic 50.0%
GGGCCAAAATCGCACAATTG+AGG - chr4_3:571149-571168 Msa0623370:CDS 50.0%
ATGAGCAGTGGAATCAGTGC+GGG - chr4_3:571690-571709 Msa0623370:intron 50.0%
TATAATGCAAGGCCGGGATG+CGG + chr4_3:571806-571825 None:intergenic 50.0%
CTACTATCGCATGGAGGTCA+AGG - chr4_3:571952-571971 Msa0623370:intron 50.0%
AGTTCCAACCTCACTCGAGT+AGG + chr4_3:572292-572311 None:intergenic 50.0%
AGGTTGCACCCAAAGGTTCC+AGG - chr4_3:568344-568363 Msa0623370:intron 55.0%
GCTGCCCGTGCTTTAATGCA+GGG - chr4_3:568419-568438 Msa0623370:intron 55.0%
AAGGCCAGGAAGGTTGCCTT+GGG - chr4_3:568521-568540 Msa0623370:intron 55.0%
GTTGCCTTGGGTGAGGATGA+GGG - chr4_3:568533-568552 Msa0623370:intron 55.0%
AGTTCCCTCATCCTCACCCA+AGG + chr4_3:568540-568559 None:intergenic 55.0%
!! CCGAACCAGAATTCTGGGAC+TGG - chr4_3:568873-568892 Msa0623370:intron 55.0%
GCAAGCCAGTCCCAGAATTC+TGG + chr4_3:568881-568900 None:intergenic 55.0%
!! TGAGTGTTGGTGGTGGTGGA+GGG + chr4_3:570033-570052 None:intergenic 55.0%
GAAACACGCGCATGGTTCCA+CGG - chr4_3:570564-570583 Msa0623370:CDS 55.0%
TGAGCAGTGGAATCAGTGCG+GGG - chr4_3:571691-571710 Msa0623370:intron 55.0%
CCTAGCACGCCAATAGACAG+CGG + chr4_3:572120-572139 None:intergenic 55.0%
AGGAATCATCAGAGTCGCGG+AGG - chr4_3:572434-572453 Msa0623370:exon 55.0%
GGCTGCGCCGAACAATCTCT+TGG + chr4_3:566993-567012 None:intergenic 60.0%
GATGAGGCCGTGTCCGTTGA+AGG - chr4_3:567180-567199 Msa0623370:three_prime_UTR 60.0%
CGCAGCTCGATGCACTACGT+AGG - chr4_3:567233-567252 Msa0623370:three_prime_UTR 60.0%
GGCTGCCCGTGCTTTAATGC+AGG - chr4_3:568418-568437 Msa0623370:intron 60.0%
GCCCGTGCTTTAATGCAGGG+AGG - chr4_3:568422-568441 Msa0623370:intron 60.0%
GAAGGCCAGGAAGGTTGCCT+TGG - chr4_3:568520-568539 Msa0623370:intron 60.0%
CTCACCCAAGGCAACCTTCC+TGG + chr4_3:568528-568547 None:intergenic 60.0%
CAGGAAGGTTGCCTTGGGTG+AGG - chr4_3:568526-568545 Msa0623370:intron 60.0%
GGTTGCCTTGGGTGAGGATG+AGG - chr4_3:568532-568551 Msa0623370:intron 60.0%
!! CTGAGTGTTGGTGGTGGTGG+AGG + chr4_3:570034-570053 None:intergenic 60.0%
CCGCTGTCTATTGGCGTGCT+AGG - chr4_3:572117-572136 Msa0623370:CDS 60.0%
TTCGGCGCAGCCTCTGTCGA+CGG - chr4_3:567001-567020 Msa0623370:three_prime_UTR 65.0%
GTTACGGCCACCGTCGACAG+AGG + chr4_3:567014-567033 None:intergenic 65.0%
GAGGCCGTGTCCGTTGAAGG+AGG - chr4_3:567183-567202 Msa0623370:three_prime_UTR 65.0%
GGCGCAGCCTCTGTCGACGG+TGG - chr4_3:567004-567023 Msa0623370:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 566952 572549 566952 ID=Msa0623370;Name=Msa0623370
chr4_3 mRNA 566952 572549 566952 ID=Msa0623370-mRNA-1;Parent=Msa0623370;Name=Msa0623370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=97|1|1|1|0.8|1|6|362|646
chr4_3 exon 566952 567406 566952 ID=Msa0623370-mRNA-1:exon:202;Parent=Msa0623370-mRNA-1
chr4_3 exon 567528 567711 567528 ID=Msa0623370-mRNA-1:exon:201;Parent=Msa0623370-mRNA-1
chr4_3 exon 567814 567986 567814 ID=Msa0623370-mRNA-1:exon:200;Parent=Msa0623370-mRNA-1
chr4_3 exon 569819 570250 569819 ID=Msa0623370-mRNA-1:exon:199;Parent=Msa0623370-mRNA-1
chr4_3 exon 570522 571175 570522 ID=Msa0623370-mRNA-1:exon:198;Parent=Msa0623370-mRNA-1
chr4_3 exon 572048 572549 572048 ID=Msa0623370-mRNA-1:exon:197;Parent=Msa0623370-mRNA-1
chr4_3 five_prime_UTR 572453 572549 572453 ID=Msa0623370-mRNA-1:five_prime_utr;Parent=Msa0623370-mRNA-1
chr4_3 CDS 572048 572452 572048 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 CDS 570522 571175 570522 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 CDS 569819 570250 569819 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 CDS 567814 567986 567814 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 CDS 567528 567711 567528 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 CDS 567314 567406 567314 ID=Msa0623370-mRNA-1:cds;Parent=Msa0623370-mRNA-1
chr4_3 three_prime_UTR 566952 567313 566952 ID=Msa0623370-mRNA-1:three_prime_utr;Parent=Msa0623370-mRNA-1
Gene Sequence

>Msa0623370

ATGGCTGACATAGTGCAATACAAGCTGGAACGCATGTTCGACGAGTTCGAAGATCTCGAGCAACGTGGACTATTCAACAAGCGAGAGATCGACGAGATTGTTAAACAGAGGCGGAAATTCGAGTACAGGCTGATGAGGCCGTGTCCGTTGAAGGAGGATTTTGTAGCGTACATAGATTATGAGACGCAGCTCGATGCACTACGTAGGTTACGGAAGAAGTCGGTGGCGCGTGAGTTGAAGAAACTAGGGAATAAGAATTTGAAGAAATCCAAATCTGATTTCGCTGGGTTGGTTAGGATTATTGATACTTATGAACTTGCTTTGAAGCGCTATAAGGGTGATATTCAACTTTGGTTTCGTTATCTTGAGTTTTGTAGGGTTAAAAAAAATGGCAGAATGAAGAAGGCACTTGCAAATCTTGTTAGGTTGCACCCAAAGGTTCCAGGAGTTTGGATATATGCTGCAGCCTGGGAGTTTGATCGTAACTTGAATGTTGTGGCTGCCCGTGCTTTAATGCAGGGAGGTCTTAGAGTTTGCCCAACATCAGAAGACCTTTGGGTGGAGTATCTTCGGATGGAACTCACATACATTAACAAGTTGAAGGCCAGGAAGGTTGCCTTGGGTGAGGATGAGGGAACTCTGACTCGTAATCCTAGAACTGTGGAAGAAAAACAATGGAGAGATGAAAACAAAGAGTTGTTTATGACCCTTGATGAAAAAGAGGAAAACGACGTTGCAAATGTTGAACCAGATGAATCAAAGAAGAACAAAGAATTATTTGCTGAGCATGGTATGAACCTTTTTCGAACTGTCTATGGTGGAGCGATTGAAGCCATCCCTTCAAGTCTCAATCTTAGAAAGAGATTTTTTGAAATATTGGAGGGAACAGAATTATCACATTACGAAGATATGTGCGAGGAGATACTGAACGACATGAAGAGGGATTTTTCAACCGAACCAGAATTCTGGGACTGGCTTGCAAGACAAGAATGCAATGTTGAAGCTGTTCACGAGATTAACCAAGAAATTTTAATTCCTCAGGTGCAAAAGGCAATTCAGGTTTATGAAGAAGCTTTGAAAAGTGTGCCTTCAGGAACTATGTTTAGTTTGTATGCAAATTTTCTAATGGGTATTGTAGCCCCTAAAGATGAAGAACCCAATATAGATGGGCCATACATACCACATCTCCTGTCAATATATGAAAGGGCTGAAAGCATGGGAATCATCACTGATGATCTTGCTTGCAAGCATGTCTCCTTACATTTGCAGTTGAGACAATTGGATGAGGCCAGGAAACTGGTAGCAAAGCTTTGCAGCGGAAAACTTGCAGAATCAGTGCAGTTATGGGAATTAAGGGTTTCTATAGAAATTACATGCATTACACAAAGTTCTTTGTTGCCCAGTGATACTGATTTGTTATCCCTTTTCGAACTCCTTAGACAAATTTTGACCAAATTTCATGTTTCAAAATCAGAGAACTTGTGGCTAAAGGCCCTTAAATTTTATGCAAGTCATAGACGATACTTTGATAAGCTGGTGGAGATTTCTGTTCTTTCTTTGGCTAAAGATGGTGGTAGTGAAAGTGGATTTTCGCTTTCATCTGCCATTGTTAGTTTTATACTTCAAAAGGATGGAATTCACAAGGCCAGAGATATCTATAAAAGATATCTAGCTTTACCGCATCCCGGCCTTGCATTATATAGGAAGTGCATTGAGCTGGAAGCAAACCTTGCATCAATAGGAGATAAAAATAGTCTCGCAAATGCCAGGAAATTATATGAATCTGCACTAGCAACTTATGACCAAAATGTTGACTTTTGGCAAGACTACTATCGCATGGAGGTCAAGATGGGAACATCACAACAAGCTACCGCTGTCTATTGGCGTGCTAGGAAAATACTTAAAGATGCCAGTGAATTTATTGCTTCCCCAGATTTATGA
Protein sequence

>Msa0623370

MADIVQYKLERMFDEFEDLEQRGLFNKREIDEIVKQRRKFEYRLMRPCPLKEDFVAYIDYETQLDALRRLRKKSVARELKKLGNKNLKKSKSDFAGLVRIIDTYELALKRYKGDIQLWFRYLEFCRVKKNGRMKKALANLVRLHPKVPGVWIYAAAWEFDRNLNVVAARALMQGGLRVCPTSEDLWVEYLRMELTYINKLKARKVALGEDEGTLTRNPRTVEEKQWRDENKELFMTLDEKEENDVANVEPDESKKNKELFAEHGMNLFRTVYGGAIEAIPSSLNLRKRFFEILEGTELSHYEDMCEEILNDMKRDFSTEPEFWDWLARQECNVEAVHEINQEILIPQVQKAIQVYEEALKSVPSGTMFSLYANFLMGIVAPKDEEPNIDGPYIPHLLSIYERAESMGIITDDLACKHVSLHLQLRQLDEARKLVAKLCSGKLAESVQLWELRVSIEITCITQSSLLPSDTDLLSLFELLRQILTKFHVSKSENLWLKALKFYASHRRYFDKLVEISVLSLAKDGGSESGFSLSSAIVSFILQKDGIHKARDIYKRYLALPHPGLALYRKCIELEANLASIGDKNSLANARKLYESALATYDQNVDFWQDYYRMEVKMGTSQQATAVYWRARKILKDASEFIASPDL*