Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041680 | XP_013468487.1 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 4.20e-116 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041680 | sp|Q9FDZ9|RL212_ARATH | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 2.56e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041680 | A0A2K3LGM4 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 2.01e-116 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1041680 | 0.837286 | 5.686163e-57 | -8.615850e-47 |
| Msa0003330 | Msa1041680 | 0.817304 | 3.533986e-52 | -8.615850e-47 |
| Msa0003360 | Msa1041680 | 0.829210 | 5.847010e-55 | -8.615850e-47 |
| Msa0021290 | Msa1041680 | 0.810497 | 1.119290e-50 | -8.615850e-47 |
| Msa0027590 | Msa1041680 | 0.908361 | 1.860279e-81 | -8.615850e-47 |
| Msa0040220 | Msa1041680 | 0.855338 | 6.748485e-62 | -8.615850e-47 |
| Msa0042480 | Msa1041680 | 0.870956 | 9.858254e-67 | -8.615850e-47 |
| Msa0044010 | Msa1041680 | 0.801824 | 7.501900e-49 | -8.615850e-47 |
| Msa0050860 | Msa1041680 | 0.827438 | 1.564423e-54 | -8.615850e-47 |
| Msa0070840 | Msa1041680 | 0.836580 | 8.608053e-57 | -8.615850e-47 |
| Msa0072570 | Msa1041680 | 0.858367 | 8.652295e-63 | -8.615850e-47 |
| Msa0075350 | Msa1041680 | 0.880816 | 4.017613e-70 | -8.615850e-47 |
| Msa0079590 | Msa1041680 | 0.872145 | 3.981977e-67 | -8.615850e-47 |
| Msa0087910 | Msa1041680 | 0.807347 | 5.283825e-50 | -8.615850e-47 |
| Msa0094210 | Msa1041680 | 0.808817 | 2.570434e-50 | -8.615850e-47 |
| Msa0113920 | Msa1041680 | 0.844073 | 9.474776e-59 | -8.615850e-47 |
| Msa0114570 | Msa1041680 | 0.811395 | 7.152852e-51 | -8.615850e-47 |
| Msa0605890 | Msa1041680 | 0.847240 | 1.310206e-59 | -8.615850e-47 |
| Msa0619230 | Msa1041680 | 0.835427 | 1.689009e-56 | -8.615850e-47 |
| Msa0622230 | Msa1041680 | 0.805604 | 1.231988e-49 | -8.615850e-47 |
| Msa0623370 | Msa1041680 | 0.804492 | 2.104909e-49 | -8.615850e-47 |
| Msa0648620 | Msa1041680 | 0.805637 | 1.212646e-49 | -8.615850e-47 |
| Msa0648670 | Msa1041680 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
| Msa0653060 | Msa1041680 | 0.846198 | 2.525567e-59 | -8.615850e-47 |
| Msa0686550 | Msa1041680 | 0.847708 | 9.748533e-60 | -8.615850e-47 |
| Msa0694400 | Msa1041680 | 0.833910 | 4.064112e-56 | -8.615850e-47 |
| Msa0704860 | Msa1041680 | 0.834403 | 3.058797e-56 | -8.615850e-47 |
| Msa0705800 | Msa1041680 | 0.886287 | 3.898565e-72 | -8.615850e-47 |
| Msa0712610 | Msa1041680 | 0.802822 | 4.674888e-49 | -8.615850e-47 |
| Msa0717380 | Msa1041680 | 0.842351 | 2.726438e-58 | -8.615850e-47 |
| Msa0758420 | Msa1041680 | 0.846856 | 1.669459e-59 | -8.615850e-47 |
| Msa0788380 | Msa1041680 | 0.918875 | 9.079088e-87 | -8.615850e-47 |
| Msa0799830 | Msa1041680 | 0.854713 | 1.024840e-61 | -8.615850e-47 |
| Msa0822580 | Msa1041680 | 0.847802 | 9.181844e-60 | -8.615850e-47 |
| Msa0838070 | Msa1041680 | 0.859909 | 2.983603e-63 | -8.615850e-47 |
| Msa0128330 | Msa1041680 | 0.823773 | 1.156322e-53 | -8.615850e-47 |
| Msa0134580 | Msa1041680 | 0.811527 | 6.695046e-51 | -8.615850e-47 |
| Msa0138890 | Msa1041680 | 0.837718 | 4.406473e-57 | -8.615850e-47 |
| Msa0146580 | Msa1041680 | 0.821008 | 5.071556e-53 | -8.615850e-47 |
| Msa0167860 | Msa1041680 | 0.832239 | 1.058817e-55 | -8.615850e-47 |
| Msa0168320 | Msa1041680 | 0.827849 | 1.246685e-54 | -8.615850e-47 |
| Msa0174580 | Msa1041680 | 0.810502 | 1.116490e-50 | -8.615850e-47 |
| Msa0175000 | Msa1041680 | 0.830085 | 3.580846e-55 | -8.615850e-47 |
| Msa0186740 | Msa1041680 | 0.807167 | 5.769124e-50 | -8.615850e-47 |
| Msa0191450 | Msa1041680 | 0.899361 | 2.139596e-77 | -8.615850e-47 |
| Msa0191550 | Msa1041680 | 0.890219 | 1.200158e-73 | -8.615850e-47 |
| Msa0192300 | Msa1041680 | 0.826604 | 2.476130e-54 | -8.615850e-47 |
| Msa0192750 | Msa1041680 | 0.811108 | 8.256141e-51 | -8.615850e-47 |
| Msa0194940 | Msa1041680 | 0.860159 | 2.508908e-63 | -8.615850e-47 |
| Msa0195030 | Msa1041680 | 0.827393 | 1.604081e-54 | -8.615850e-47 |
| Msa0210360 | Msa1041680 | 0.852123 | 5.673241e-61 | -8.615850e-47 |
| Msa0233550 | Msa1041680 | 0.834844 | 2.369912e-56 | -8.615850e-47 |
| Msa0235050 | Msa1041680 | 0.822388 | 2.433519e-53 | -8.615850e-47 |
| Msa0369410 | Msa1041680 | 0.860281 | 2.304430e-63 | -8.615850e-47 |
| Msa0376890 | Msa1041680 | 0.853997 | 1.649696e-61 | -8.615850e-47 |
| Msa0377520 | Msa1041680 | 0.807337 | 5.309876e-50 | -8.615850e-47 |
| Msa0426090 | Msa1041680 | 0.905592 | 3.646108e-80 | -8.615850e-47 |
| Msa0426250 | Msa1041680 | 0.872702 | 2.596587e-67 | -8.615850e-47 |
| Msa0463520 | Msa1041680 | 0.839327 | 1.692948e-57 | -8.615850e-47 |
| Msa0471880 | Msa1041680 | 0.855906 | 4.607619e-62 | -8.615850e-47 |
| Msa0472480 | Msa1041680 | 0.907333 | 5.676212e-81 | -8.615850e-47 |
| Msa0475810 | Msa1041680 | 0.853296 | 2.624693e-61 | -8.615850e-47 |
| Msa0481520 | Msa1041680 | 0.863906 | 1.781931e-64 | -8.615850e-47 |
| Msa0482560 | Msa1041680 | 0.823139 | 1.626295e-53 | -8.615850e-47 |
| Msa1037290 | Msa1041680 | 0.898259 | 6.324391e-77 | -8.615850e-47 |
| Msa1040160 | Msa1041680 | 0.885350 | 8.768591e-72 | -8.615850e-47 |
| Msa1041680 | Msa1042100 | 0.861577 | 9.305178e-64 | -8.615850e-47 |
| Msa1041680 | Msa1054280 | 0.802788 | 4.751085e-49 | -8.615850e-47 |
| Msa1041680 | Msa1078870 | 0.813197 | 2.890858e-51 | -8.615850e-47 |
| Msa1041680 | Msa1078980 | 0.841326 | 5.085344e-58 | -8.615850e-47 |
| Msa1041680 | Msa1082170 | 0.850555 | 1.573934e-60 | -8.615850e-47 |
| Msa1041680 | Msa1083370 | 0.875664 | 2.578371e-68 | -8.615850e-47 |
| Msa1041680 | Msa1089220 | 0.806002 | 1.016226e-49 | -8.615850e-47 |
| Msa1041680 | Msa1096900 | 0.814207 | 1.732398e-51 | -8.615850e-47 |
| Msa1041680 | Msa1116940 | 0.831861 | 1.312607e-55 | -8.615850e-47 |
| Msa1041680 | Msa1126520 | 0.849997 | 2.256563e-60 | -8.615850e-47 |
| Msa1041680 | Msa1164150 | 0.896251 | 4.413336e-76 | -8.615850e-47 |
| Msa1041680 | Msa1165640 | 0.806056 | 9.899135e-50 | -8.615850e-47 |
| Msa1041680 | Msa1166570 | 0.998403 | 4.565567e-264 | -8.615850e-47 |
| Msa1041680 | Msa1167540 | 0.806282 | 8.874245e-50 | -8.615850e-47 |
| Msa1041680 | Msa1167550 | 0.807337 | 5.309876e-50 | -8.615850e-47 |
| Msa1041680 | Msa1169180 | 0.828174 | 1.041215e-54 | -8.615850e-47 |
| Msa1041680 | Msa1180000 | 0.853558 | 2.207449e-61 | -8.615850e-47 |
| Msa1041680 | Msa1186030 | 0.871977 | 4.526946e-67 | -8.615850e-47 |
| Msa1041680 | Msa1206240 | 0.847762 | 9.419533e-60 | -8.615850e-47 |
| Msa1041680 | Msa1218170 | 0.866703 | 2.348828e-65 | -8.615850e-47 |
| Msa1041680 | Msa1237040 | 0.859944 | 2.913437e-63 | -8.615850e-47 |
| Msa1041680 | Msa1240270 | 0.857868 | 1.217409e-62 | -8.615850e-47 |
| Msa1041680 | Msa1258540 | 0.866091 | 3.673819e-65 | -8.615850e-47 |
| Msa1041680 | Msa1263620 | 0.803851 | 2.861874e-49 | -8.615850e-47 |
| Msa1041680 | Msa1270640 | 0.841792 | 3.832682e-58 | -8.615850e-47 |
| Msa1041680 | Msa1270710 | 0.838165 | 3.381786e-57 | -8.615850e-47 |
| Msa1041680 | Msa1278130 | 0.847310 | 1.254098e-59 | -8.615850e-47 |
| Msa1041680 | Msa1311400 | 0.863715 | 2.041787e-64 | -8.615850e-47 |
| Msa1041680 | Msa1317390 | 0.840019 | 1.118836e-57 | -8.615850e-47 |
| Msa1041680 | Msa1351020 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
| Msa1041680 | Msa1358710 | 0.815177 | 1.056479e-51 | -8.615850e-47 |
| Msa1041680 | Msa1363910 | 0.821168 | 4.659022e-53 | -8.615850e-47 |
| Msa1041680 | Msa1364110 | 0.846292 | 2.380287e-59 | -8.615850e-47 |
| Msa1041680 | Msa1368920 | 0.899111 | 2.737267e-77 | -8.615850e-47 |
| Msa1041680 | Msa1374240 | 0.861091 | 1.308968e-63 | -8.615850e-47 |
| Msa1041680 | Msa1385480 | 0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa1041680 | Msa1390760 | 0.832827 | 7.568282e-56 | -8.615850e-47 |
| Msa1041680 | Msa1392590 | 0.819634 | 1.047527e-52 | -8.615850e-47 |
| Msa1041680 | Msa1397100 | 0.852424 | 4.657714e-61 | -8.615850e-47 |
| Msa1041680 | Msa1403910 | 0.881973 | 1.537807e-70 | -8.615850e-47 |
| Msa1041680 | Msa1418770 | 0.812614 | 3.879659e-51 | -8.615850e-47 |
| Msa1041680 | Msa1426120 | 0.824233 | 9.020354e-54 | -8.615850e-47 |
| Msa1041680 | Msa1432310 | 0.825738 | 3.980140e-54 | -8.615850e-47 |
| Msa1041680 | Msa1446410 | 0.816027 | 6.831735e-52 | -8.615850e-47 |
| Msa1041680 | Msa1449160 | 0.853958 | 1.692996e-61 | -8.615850e-47 |
| Msa1041680 | Msa1453530 | 0.828107 | 1.080492e-54 | -8.615850e-47 |
| Msa1041680 | Msa1463570 | 0.825842 | 3.759171e-54 | -8.615850e-47 |
| Msa1041680 | Msa1465700 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0239420 | Msa1041680 | 0.827055 | 1.932249e-54 | -8.615850e-47 |
| Msa0265250 | Msa1041680 | 0.810600 | 1.063239e-50 | -8.615850e-47 |
| Msa0281330 | Msa1041680 | 0.804182 | 2.442168e-49 | -8.615850e-47 |
| Msa0281370 | Msa1041680 | 0.845244 | 4.582379e-59 | -8.615850e-47 |
| Msa0297830 | Msa1041680 | 0.854573 | 1.124984e-61 | -8.615850e-47 |
| Msa0298870 | Msa1041680 | 0.848956 | 4.403887e-60 | -8.615850e-47 |
| Msa0301220 | Msa1041680 | 0.857888 | 1.200758e-62 | -8.615850e-47 |
| Msa0301250 | Msa1041680 | 0.824287 | 8.759850e-54 | -8.615850e-47 |
| Msa0313060 | Msa1041680 | 0.832835 | 7.535639e-56 | -8.615850e-47 |
| Msa0315430 | Msa1041680 | 0.834380 | 3.099139e-56 | -8.615850e-47 |
| Msa0315660 | Msa1041680 | 0.803631 | 3.179852e-49 | -8.615850e-47 |
| Msa0321270 | Msa1041680 | 0.808088 | 3.677974e-50 | -8.615850e-47 |
| Msa0335840 | Msa1041680 | 0.865641 | 5.095764e-65 | -8.615850e-47 |
| Msa0346090 | Msa1041680 | 0.806866 | 6.679543e-50 | -8.615850e-47 |
| Msa0517480 | Msa1041680 | 0.813005 | 3.186378e-51 | -8.615850e-47 |
| Msa0529900 | Msa1041680 | 0.801231 | 9.925839e-49 | -8.615850e-47 |
| Msa0540480 | Msa1041680 | 0.813772 | 2.161488e-51 | -8.615850e-47 |
| Msa0547920 | Msa1041680 | 0.807018 | 6.202538e-50 | -8.615850e-47 |
| Msa0550420 | Msa1041680 | 0.837674 | 4.522773e-57 | -8.615850e-47 |
| Msa0573550 | Msa1041680 | 0.863799 | 1.923894e-64 | -8.615850e-47 |
| Msa0582070 | Msa1041680 | 0.857882 | 1.205937e-62 | -8.615850e-47 |
| Msa0584030 | Msa1041680 | 0.855573 | 5.762026e-62 | -8.615850e-47 |
| Msa0596370 | Msa1041680 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0597240 | Msa1041680 | 0.858836 | 6.264982e-63 | -8.615850e-47 |
| Msa0861320 | Msa1041680 | 0.850981 | 1.194483e-60 | -8.615850e-47 |
| Msa0915540 | Msa1041680 | 0.832880 | 7.342682e-56 | -8.615850e-47 |
| Msa0929700 | Msa1041680 | 0.846403 | 2.220331e-59 | -8.615850e-47 |
| Msa0929790 | Msa1041680 | 0.807663 | 4.527602e-50 | -8.615850e-47 |
| Msa0930790 | Msa1041680 | 0.811593 | 6.479166e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041680 | MtrunA17_Chr1g0183851 | 99.390 | 164 | 1 | 0 | 1 | 164 | 1 | 164 | 3.86e-120 | 335 |
| Msa1041680 | MtrunA17_Chr7g0268461 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 7.14e-120 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041680 | AT1G57660.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 2.61e-101 | 288 |
| Msa1041680 | AT1G57860.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 2.61e-101 | 288 |
| Msa1041680 | AT1G09590.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 4.66e-101 | 288 |
| Msa1041680 | AT1G09690.1 | 81.098 | 164 | 31 | 0 | 1 | 164 | 1 | 164 | 4.66e-101 | 288 |
Find 74 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAACCTAGGGTTTCTTAT+TGG | 0.209419 | 7_1:-79251710 | None:intergenic |
| GGCATCTTTCTTCTCCTTCT+AGG | 0.223627 | 7_1:-79251801 | None:intergenic |
| TGAACCTAGGGTTTCTTATT+GGG | 0.253215 | 7_1:-79251709 | None:intergenic |
| ACTCTTTCTCTCGTCCATTC+AGG | 0.293911 | 7_1:+79251856 | Msa1041680:CDS |
| TGGGTATCTTTCTTCATCTA+TGG | 0.322424 | 7_1:+79253111 | Msa1041680:three_prime_UTR |
| AAACCAGGTTTAGGTCCTTC+TGG | 0.327783 | 7_1:-79252808 | None:intergenic |
| TCGGCGATTATGTCGATATC+AGG | 0.353109 | 7_1:+79251925 | Msa1041680:CDS |
| AGGACCTAAACCTGGTTTCA+TGG | 0.367201 | 7_1:+79252813 | Msa1041680:CDS |
| TGATGTGGTTAATGATCTTA+AGG | 0.381458 | 7_1:+79252876 | Msa1041680:CDS |
| GGTTAACGGTGCCGTTCATA+AGG | 0.392360 | 7_1:+79251947 | Msa1041680:CDS |
| TCAACCATGAAACCAGGTTT+AGG | 0.394105 | 7_1:-79252817 | None:intergenic |
| TTAACCACATCATATGGAAT+TGG | 0.408404 | 7_1:-79252865 | None:intergenic |
| CTCAACACCAATAGCACGTT+TGG | 0.409541 | 7_1:-79252021 | None:intergenic |
| CTCTCGTCCATTCAGGAAGA+AGG | 0.411770 | 7_1:+79251863 | Msa1041680:CDS |
| AACTCCTCGGTGCACCTAGA+TGG | 0.414621 | 7_1:-79252706 | None:intergenic |
| GACATAATCGCCGATGTGAT+AGG | 0.419105 | 7_1:-79251916 | None:intergenic |
| GGTTTATTCGTATTGCTTGT+GGG | 0.420928 | 7_1:+79253067 | Msa1041680:three_prime_UTR |
| AGATCATTAACCACATCATA+TGG | 0.425684 | 7_1:-79252871 | None:intergenic |
| ATGGGCGTACCGGTCGTGTC+TGG | 0.430669 | 7_1:+79251991 | Msa1041680:CDS |
| TTCGTATTGCTTGTGGGTCG+TGG | 0.438615 | 7_1:+79253073 | Msa1041680:three_prime_UTR |
| GCATCTTTCTTCTCCTTCTA+GGG | 0.447415 | 7_1:-79251800 | None:intergenic |
| ATTGTACCCTTCTTCCTGAA+TGG | 0.450869 | 7_1:-79251870 | None:intergenic |
| AGGTTAGGAACAAGATTCTC+AGG | 0.451952 | 7_1:+79252650 | Msa1041680:intron |
| AAACCTGGTTTCATGGTTGA+AGG | 0.456376 | 7_1:+79252820 | Msa1041680:CDS |
| CATTCTTAATCTTCCTCAAA+CGG | 0.463824 | 7_1:-79252729 | None:intergenic |
| AACGTTACCAAACGTGCTAT+TGG | 0.472288 | 7_1:+79252014 | Msa1041680:CDS |
| AGGTCCTTCTGGCTTGCGCT+TGG | 0.474164 | 7_1:-79252797 | None:intergenic |
| TTTATGTATGTATGAACCTA+GGG | 0.474284 | 7_1:-79251721 | None:intergenic |
| GATTAAGAATGATCAACTTA+AGG | 0.476396 | 7_1:+79252741 | Msa1041680:CDS |
| TGGTTTATTCGTATTGCTTG+TGG | 0.484408 | 7_1:+79253066 | Msa1041680:three_prime_UTR |
| TGGAGCATGTTATGCCATCT+AGG | 0.488269 | 7_1:+79252692 | Msa1041680:CDS |
| TATGTCGATATCAGGGTTAA+CGG | 0.499321 | 7_1:+79251933 | Msa1041680:CDS |
| GATGTGGTTAATGATCTTAA+GGG | 0.514482 | 7_1:+79252877 | Msa1041680:CDS |
| TTTGTTGCGTTGCTGCTGAC+GGG | 0.514504 | 7_1:+79253146 | Msa1041680:three_prime_UTR |
| ATTCACTGTCTGATACGAAA+TGG | 0.515343 | 7_1:-79251760 | None:intergenic |
| CATGGTTGAAGGAGCTACAT+TGG | 0.515633 | 7_1:+79252831 | Msa1041680:CDS |
| CAAACGTGCTATTGGTGTTG+AGG | 0.526075 | 7_1:+79252022 | Msa1041680:CDS |
| AGAAAGATGCCGGCTGGTCA+TGG | 0.530667 | 7_1:+79251813 | Msa1041680:exon |
| GCACCGAGGAGTTCCGTTTG+AGG | 0.535387 | 7_1:+79252716 | Msa1041680:CDS |
| AAGTTCTACCATGGGCGTAC+CGG | 0.536603 | 7_1:+79251981 | Msa1041680:CDS |
| AAGGCTGATGCTAAGGCAAA+GGG | 0.537787 | 7_1:+79252760 | Msa1041680:CDS |
| GTTTGTTGCGTTGCTGCTGA+CGG | 0.544760 | 7_1:+79253145 | Msa1041680:three_prime_UTR |
| TCAACTTAAGGCTGATGCTA+AGG | 0.551978 | 7_1:+79252753 | Msa1041680:CDS |
| TAAGGCTGATGCTAAGGCAA+AGG | 0.552535 | 7_1:+79252759 | Msa1041680:CDS |
| GTTAACGGTGCCGTTCATAA+GGG | 0.556218 | 7_1:+79251948 | Msa1041680:CDS |
| TTTCGTATCAGACAGTGAAT+CGG | 0.557124 | 7_1:+79251763 | Msa1041680:five_prime_UTR |
| GATCTCAAACCATGACCAGC+CGG | 0.563821 | 7_1:-79251822 | None:intergenic |
| CGCCGATGTGATAGGTTCTG+AGG | 0.582425 | 7_1:-79251908 | None:intergenic |
| TAACATGCTCCACTCGAACA+TGG | 0.582558 | 7_1:-79252681 | None:intergenic |
| AGGAGAAGAAAGATGCCGGC+TGG | 0.584433 | 7_1:+79251807 | Msa1041680:exon |
| CTTCCTCAAACGGAACTCCT+CGG | 0.593955 | 7_1:-79252719 | None:intergenic |
| AGCACCAAGCGCAAGCCAGA+AGG | 0.595144 | 7_1:+79252793 | Msa1041680:CDS |
| TACTCCAATTCCATATGATG+TGG | 0.596403 | 7_1:+79252861 | Msa1041680:CDS |
| TAGAAGGAGAAGAAAGATGC+CGG | 0.597264 | 7_1:+79251803 | Msa1041680:exon |
| TCTCGTCCATTCAGGAAGAA+GGG | 0.597777 | 7_1:+79251864 | Msa1041680:CDS |
| GTGATAGGTTCTGAGGTAAG+TGG | 0.598261 | 7_1:-79251901 | None:intergenic |
| GGTAACGTTCCAGACACGAC+CGG | 0.599652 | 7_1:-79252000 | None:intergenic |
| GGTTCTGAGGTAAGTGGCGA+GGG | 0.600826 | 7_1:-79251895 | None:intergenic |
| AAAGCCCAATAAGAAACCCT+AGG | 0.603225 | 7_1:+79251705 | Msa1041680:five_prime_UTR |
| CGCCCATGGTAGAACTTGTG+TGG | 0.607884 | 7_1:-79251975 | None:intergenic |
| GCTCCTTCAACCATGAAACC+AGG | 0.609967 | 7_1:-79252823 | None:intergenic |
| TGCCACACAAGTTCTACCAT+GGG | 0.615951 | 7_1:+79251973 | Msa1041680:CDS |
| AGGTTCTGAGGTAAGTGGCG+AGG | 0.615968 | 7_1:-79251896 | None:intergenic |
| CGTGGCACTGATCGTTACGA+TGG | 0.616626 | 7_1:+79253091 | Msa1041680:three_prime_UTR |
| AGACACGACCGGTACGCCCA+TGG | 0.619384 | 7_1:-79251989 | None:intergenic |
| ATGCCACACAAGTTCTACCA+TGG | 0.619578 | 7_1:+79251972 | Msa1041680:CDS |
| CGGCGATTATGTCGATATCA+GGG | 0.624782 | 7_1:+79251926 | Msa1041680:CDS |
| AAGCCAGAAGGACCTAAACC+TGG | 0.625100 | 7_1:+79252805 | Msa1041680:CDS |
| GTGGTTAATGATCTTAAGGG+AGG | 0.627017 | 7_1:+79252880 | Msa1041680:CDS |
| GTGTGGCATACCCTTATGAA+CGG | 0.627528 | 7_1:-79251958 | None:intergenic |
| GTGGCACTGATCGTTACGAT+GGG | 0.641644 | 7_1:+79253092 | Msa1041680:three_prime_UTR |
| GAAGAGAATCCATGTTCGAG+TGG | 0.642302 | 7_1:+79252672 | Msa1041680:CDS |
| TACCTCAGAACCTATCACAT+CGG | 0.680253 | 7_1:+79251906 | Msa1041680:CDS |
| TATGCCATCTAGGTGCACCG+AGG | 0.784253 | 7_1:+79252702 | Msa1041680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGATTTATTGTATTTT+AGG | + | chr7_1:79252164-79252183 | Msa1041680:intron | 10.0% |
| !!! | TATTGATTTATTGTATTTTA+GGG | + | chr7_1:79252165-79252184 | Msa1041680:intron | 10.0% |
| !!! | ATTATATCTTTTTAATAATG+TGG | + | chr7_1:79253046-79253065 | Msa1041680:three_prime_UTR | 10.0% |
| !!! | TTATTGATTTATTGTATTTT+AGG | + | chr7_1:79252164-79252183 | Msa1041680:intron | 10.0% |
| !!! | TATTGATTTATTGTATTTTA+GGG | + | chr7_1:79252165-79252184 | Msa1041680:intron | 10.0% |
| !!! | ATTATATCTTTTTAATAATG+TGG | + | chr7_1:79253046-79253065 | Msa1041680:three_prime_UTR | 10.0% |
| !! | AAATGAATTAAGTAAGTATT+TGG | + | chr7_1:79252346-79252365 | Msa1041680:intron | 15.0% |
| !! | TATAATTACATTGATCAAAT+GGG | - | chr7_1:79252527-79252546 | None:intergenic | 15.0% |
| !! | ATATAATTACATTGATCAAA+TGG | - | chr7_1:79252528-79252547 | None:intergenic | 15.0% |
| !!! | ATTATATGTTGTTATTTATC+TGG | + | chr7_1:79252541-79252560 | Msa1041680:intron | 15.0% |
| !! | AAATGAATTAAGTAAGTATT+TGG | + | chr7_1:79252346-79252365 | Msa1041680:intron | 15.0% |
| !! | TATAATTACATTGATCAAAT+GGG | - | chr7_1:79252527-79252546 | None:intergenic | 15.0% |
| !! | ATATAATTACATTGATCAAA+TGG | - | chr7_1:79252528-79252547 | None:intergenic | 15.0% |
| !!! | ATTATATGTTGTTATTTATC+TGG | + | chr7_1:79252541-79252560 | Msa1041680:intron | 15.0% |
| !!! | TATTGAAATATTGCTATTTG+TGG | + | chr7_1:79252624-79252643 | Msa1041680:intron | 20.0% |
| !!! | TATTGAAATATTGCTATTTG+TGG | + | chr7_1:79252624-79252643 | Msa1041680:intron | 20.0% |
| !!! | TCTATTTGCTTTTTGTCATT+GGG | - | chr7_1:79251685-79251704 | None:intergenic | 25.0% |
| !!! | TTCTATTTGCTTTTTGTCAT+TGG | - | chr7_1:79251686-79251705 | None:intergenic | 25.0% |
| ! | TTTATGTATGTATGAACCTA+GGG | - | chr7_1:79251724-79251743 | None:intergenic | 25.0% |
| !! | TTTTATGTATGTATGAACCT+AGG | - | chr7_1:79251725-79251744 | None:intergenic | 25.0% |
| ! | AAAACCACAGAACTAAAATT+CGG | - | chr7_1:79252084-79252103 | None:intergenic | 25.0% |
| !! | TGTGTGCTTTAATTACATTT+TGG | + | chr7_1:79252210-79252229 | Msa1041680:intron | 25.0% |
| !! | GGATTTTGTAAATTTACTTG+TGG | + | chr7_1:79252367-79252386 | Msa1041680:intron | 25.0% |
| ! | GATTAAGAATGATCAACTTA+AGG | + | chr7_1:79252741-79252760 | Msa1041680:CDS | 25.0% |
| ! | AAGACAGTCTAAAAAACATT+AGG | - | chr7_1:79252926-79252945 | None:intergenic | 25.0% |
| !!! | TTAGACTGTCTTATTTTGTT+TGG | + | chr7_1:79252934-79252953 | Msa1041680:three_prime_UTR | 25.0% |
| !!! | TCTATTTGCTTTTTGTCATT+GGG | - | chr7_1:79251685-79251704 | None:intergenic | 25.0% |
| !!! | TTCTATTTGCTTTTTGTCAT+TGG | - | chr7_1:79251686-79251705 | None:intergenic | 25.0% |
| ! | TTTATGTATGTATGAACCTA+GGG | - | chr7_1:79251724-79251743 | None:intergenic | 25.0% |
| !! | TTTTATGTATGTATGAACCT+AGG | - | chr7_1:79251725-79251744 | None:intergenic | 25.0% |
| ! | AAAACCACAGAACTAAAATT+CGG | - | chr7_1:79252084-79252103 | None:intergenic | 25.0% |
| !! | TGTGTGCTTTAATTACATTT+TGG | + | chr7_1:79252210-79252229 | Msa1041680:intron | 25.0% |
| !! | GGATTTTGTAAATTTACTTG+TGG | + | chr7_1:79252367-79252386 | Msa1041680:intron | 25.0% |
| ! | GATTAAGAATGATCAACTTA+AGG | + | chr7_1:79252741-79252760 | Msa1041680:CDS | 25.0% |
| ! | AAGACAGTCTAAAAAACATT+AGG | - | chr7_1:79252926-79252945 | None:intergenic | 25.0% |
| !!! | TTAGACTGTCTTATTTTGTT+TGG | + | chr7_1:79252934-79252953 | Msa1041680:three_prime_UTR | 25.0% |
| !!! | ATTTCCGAATTTTAGTTCTG+TGG | + | chr7_1:79252077-79252096 | Msa1041680:intron | 30.0% |
| ! | AGGGTTTATGATTTTCTATG+CGG | + | chr7_1:79252184-79252203 | Msa1041680:intron | 30.0% |
| !! | AATATTGCTATTTGTGGTTC+AGG | + | chr7_1:79252630-79252649 | Msa1041680:intron | 30.0% |
| CATTCTTAATCTTCCTCAAA+CGG | - | chr7_1:79252732-79252751 | None:intergenic | 30.0% | |
| TTAACCACATCATATGGAAT+TGG | - | chr7_1:79252868-79252887 | None:intergenic | 30.0% | |
| AGATCATTAACCACATCATA+TGG | - | chr7_1:79252874-79252893 | None:intergenic | 30.0% | |
| TGATGTGGTTAATGATCTTA+AGG | + | chr7_1:79252876-79252895 | Msa1041680:CDS | 30.0% | |
| GATGTGGTTAATGATCTTAA+GGG | + | chr7_1:79252877-79252896 | Msa1041680:CDS | 30.0% | |
| ! | TTTTGTGAAATGTGAAATCG+AGG | + | chr7_1:79252959-79252978 | Msa1041680:three_prime_UTR | 30.0% |
| !!! | ATTTCCGAATTTTAGTTCTG+TGG | + | chr7_1:79252077-79252096 | Msa1041680:intron | 30.0% |
| ! | AGGGTTTATGATTTTCTATG+CGG | + | chr7_1:79252184-79252203 | Msa1041680:intron | 30.0% |
| !! | AATATTGCTATTTGTGGTTC+AGG | + | chr7_1:79252630-79252649 | Msa1041680:intron | 30.0% |
| CATTCTTAATCTTCCTCAAA+CGG | - | chr7_1:79252732-79252751 | None:intergenic | 30.0% | |
| TTAACCACATCATATGGAAT+TGG | - | chr7_1:79252868-79252887 | None:intergenic | 30.0% | |
| AGATCATTAACCACATCATA+TGG | - | chr7_1:79252874-79252893 | None:intergenic | 30.0% | |
| TGATGTGGTTAATGATCTTA+AGG | + | chr7_1:79252876-79252895 | Msa1041680:CDS | 30.0% | |
| GATGTGGTTAATGATCTTAA+GGG | + | chr7_1:79252877-79252896 | Msa1041680:CDS | 30.0% | |
| ! | TTTTGTGAAATGTGAAATCG+AGG | + | chr7_1:79252959-79252978 | Msa1041680:three_prime_UTR | 30.0% |
| TGAACCTAGGGTTTCTTATT+GGG | - | chr7_1:79251712-79251731 | None:intergenic | 35.0% | |
| ATGAACCTAGGGTTTCTTAT+TGG | - | chr7_1:79251713-79251732 | None:intergenic | 35.0% | |
| ATTCACTGTCTGATACGAAA+TGG | - | chr7_1:79251763-79251782 | None:intergenic | 35.0% | |
| TTTCGTATCAGACAGTGAAT+CGG | + | chr7_1:79251763-79251782 | Msa1041680:five_prime_UTR | 35.0% | |
| TATGTCGATATCAGGGTTAA+CGG | + | chr7_1:79251933-79251952 | Msa1041680:CDS | 35.0% | |
| TGTTTGCAAGAGAGTTTATC+AGG | + | chr7_1:79252576-79252595 | Msa1041680:intron | 35.0% | |
| TACTCCAATTCCATATGATG+TGG | + | chr7_1:79252861-79252880 | Msa1041680:CDS | 35.0% | |
| TGGTTTATTCGTATTGCTTG+TGG | + | chr7_1:79253066-79253085 | Msa1041680:three_prime_UTR | 35.0% | |
| GGTTTATTCGTATTGCTTGT+GGG | + | chr7_1:79253067-79253086 | Msa1041680:three_prime_UTR | 35.0% | |
| TGGGTATCTTTCTTCATCTA+TGG | + | chr7_1:79253111-79253130 | Msa1041680:three_prime_UTR | 35.0% | |
| TGAACCTAGGGTTTCTTATT+GGG | - | chr7_1:79251712-79251731 | None:intergenic | 35.0% | |
| ATGAACCTAGGGTTTCTTAT+TGG | - | chr7_1:79251713-79251732 | None:intergenic | 35.0% | |
| ATTCACTGTCTGATACGAAA+TGG | - | chr7_1:79251763-79251782 | None:intergenic | 35.0% | |
| TTTCGTATCAGACAGTGAAT+CGG | + | chr7_1:79251763-79251782 | Msa1041680:five_prime_UTR | 35.0% | |
| TATGTCGATATCAGGGTTAA+CGG | + | chr7_1:79251933-79251952 | Msa1041680:CDS | 35.0% | |
| TGTTTGCAAGAGAGTTTATC+AGG | + | chr7_1:79252576-79252595 | Msa1041680:intron | 35.0% | |
| TACTCCAATTCCATATGATG+TGG | + | chr7_1:79252861-79252880 | Msa1041680:CDS | 35.0% | |
| TGGTTTATTCGTATTGCTTG+TGG | + | chr7_1:79253066-79253085 | Msa1041680:three_prime_UTR | 35.0% | |
| GGTTTATTCGTATTGCTTGT+GGG | + | chr7_1:79253067-79253086 | Msa1041680:three_prime_UTR | 35.0% | |
| TGGGTATCTTTCTTCATCTA+TGG | + | chr7_1:79253111-79253130 | Msa1041680:three_prime_UTR | 35.0% | |
| !!! | TTGCTTTTTGTCATTGGGCT+GGG | - | chr7_1:79251680-79251699 | None:intergenic | 40.0% |
| !!! | TTTGCTTTTTGTCATTGGGC+TGG | - | chr7_1:79251681-79251700 | None:intergenic | 40.0% |
| AAAGCCCAATAAGAAACCCT+AGG | + | chr7_1:79251705-79251724 | Msa1041680:five_prime_UTR | 40.0% | |
| GCATCTTTCTTCTCCTTCTA+GGG | - | chr7_1:79251803-79251822 | None:intergenic | 40.0% | |
| TAGAAGGAGAAGAAAGATGC+CGG | + | chr7_1:79251803-79251822 | Msa1041680:exon | 40.0% | |
| ATTGTACCCTTCTTCCTGAA+TGG | - | chr7_1:79251873-79251892 | None:intergenic | 40.0% | |
| TACCTCAGAACCTATCACAT+CGG | + | chr7_1:79251906-79251925 | Msa1041680:CDS | 40.0% | |
| AACGTTACCAAACGTGCTAT+TGG | + | chr7_1:79252014-79252033 | Msa1041680:CDS | 40.0% | |
| ! | TGCTATTTGTGGTTCAGGTT+AGG | + | chr7_1:79252635-79252654 | Msa1041680:intron | 40.0% |
| AGGTTAGGAACAAGATTCTC+AGG | + | chr7_1:79252650-79252669 | Msa1041680:intron | 40.0% | |
| TCAACTTAAGGCTGATGCTA+AGG | + | chr7_1:79252753-79252772 | Msa1041680:CDS | 40.0% | |
| TCAACCATGAAACCAGGTTT+AGG | - | chr7_1:79252820-79252839 | None:intergenic | 40.0% | |
| AAACCTGGTTTCATGGTTGA+AGG | + | chr7_1:79252820-79252839 | Msa1041680:CDS | 40.0% | |
| GTGGTTAATGATCTTAAGGG+AGG | + | chr7_1:79252880-79252899 | Msa1041680:CDS | 40.0% | |
| !!! | TTGCTTTTTGTCATTGGGCT+GGG | - | chr7_1:79251680-79251699 | None:intergenic | 40.0% |
| !!! | TTTGCTTTTTGTCATTGGGC+TGG | - | chr7_1:79251681-79251700 | None:intergenic | 40.0% |
| AAAGCCCAATAAGAAACCCT+AGG | + | chr7_1:79251705-79251724 | Msa1041680:five_prime_UTR | 40.0% | |
| GCATCTTTCTTCTCCTTCTA+GGG | - | chr7_1:79251803-79251822 | None:intergenic | 40.0% | |
| TAGAAGGAGAAGAAAGATGC+CGG | + | chr7_1:79251803-79251822 | Msa1041680:exon | 40.0% | |
| ATTGTACCCTTCTTCCTGAA+TGG | - | chr7_1:79251873-79251892 | None:intergenic | 40.0% | |
| TACCTCAGAACCTATCACAT+CGG | + | chr7_1:79251906-79251925 | Msa1041680:CDS | 40.0% | |
| AACGTTACCAAACGTGCTAT+TGG | + | chr7_1:79252014-79252033 | Msa1041680:CDS | 40.0% | |
| ! | TGCTATTTGTGGTTCAGGTT+AGG | + | chr7_1:79252635-79252654 | Msa1041680:intron | 40.0% |
| AGGTTAGGAACAAGATTCTC+AGG | + | chr7_1:79252650-79252669 | Msa1041680:intron | 40.0% | |
| TCAACTTAAGGCTGATGCTA+AGG | + | chr7_1:79252753-79252772 | Msa1041680:CDS | 40.0% | |
| TCAACCATGAAACCAGGTTT+AGG | - | chr7_1:79252820-79252839 | None:intergenic | 40.0% | |
| AAACCTGGTTTCATGGTTGA+AGG | + | chr7_1:79252820-79252839 | Msa1041680:CDS | 40.0% | |
| GTGGTTAATGATCTTAAGGG+AGG | + | chr7_1:79252880-79252899 | Msa1041680:CDS | 40.0% | |
| GGCATCTTTCTTCTCCTTCT+AGG | - | chr7_1:79251804-79251823 | None:intergenic | 45.0% | |
| ACTCTTTCTCTCGTCCATTC+AGG | + | chr7_1:79251856-79251875 | Msa1041680:CDS | 45.0% | |
| TCTCGTCCATTCAGGAAGAA+GGG | + | chr7_1:79251864-79251883 | Msa1041680:CDS | 45.0% | |
| !! | GTGATAGGTTCTGAGGTAAG+TGG | - | chr7_1:79251904-79251923 | None:intergenic | 45.0% |
| GACATAATCGCCGATGTGAT+AGG | - | chr7_1:79251919-79251938 | None:intergenic | 45.0% | |
| TCGGCGATTATGTCGATATC+AGG | + | chr7_1:79251925-79251944 | Msa1041680:CDS | 45.0% | |
| CGGCGATTATGTCGATATCA+GGG | + | chr7_1:79251926-79251945 | Msa1041680:CDS | 45.0% | |
| !! | GTTAACGGTGCCGTTCATAA+GGG | + | chr7_1:79251948-79251967 | Msa1041680:CDS | 45.0% |
| GTGTGGCATACCCTTATGAA+CGG | - | chr7_1:79251961-79251980 | None:intergenic | 45.0% | |
| ATGCCACACAAGTTCTACCA+TGG | + | chr7_1:79251972-79251991 | Msa1041680:CDS | 45.0% | |
| TGCCACACAAGTTCTACCAT+GGG | + | chr7_1:79251973-79251992 | Msa1041680:CDS | 45.0% | |
| CTCAACACCAATAGCACGTT+TGG | - | chr7_1:79252024-79252043 | None:intergenic | 45.0% | |
| !! | CAAACGTGCTATTGGTGTTG+AGG | + | chr7_1:79252022-79252041 | Msa1041680:CDS | 45.0% |
| GAAGAGAATCCATGTTCGAG+TGG | + | chr7_1:79252672-79252691 | Msa1041680:CDS | 45.0% | |
| TAACATGCTCCACTCGAACA+TGG | - | chr7_1:79252684-79252703 | None:intergenic | 45.0% | |
| TGGAGCATGTTATGCCATCT+AGG | + | chr7_1:79252692-79252711 | Msa1041680:CDS | 45.0% | |
| TAAGGCTGATGCTAAGGCAA+AGG | + | chr7_1:79252759-79252778 | Msa1041680:CDS | 45.0% | |
| AAGGCTGATGCTAAGGCAAA+GGG | + | chr7_1:79252760-79252779 | Msa1041680:CDS | 45.0% | |
| AAACCAGGTTTAGGTCCTTC+TGG | - | chr7_1:79252811-79252830 | None:intergenic | 45.0% | |
| AGGACCTAAACCTGGTTTCA+TGG | + | chr7_1:79252813-79252832 | Msa1041680:CDS | 45.0% | |
| CATGGTTGAAGGAGCTACAT+TGG | + | chr7_1:79252831-79252850 | Msa1041680:CDS | 45.0% | |
| GGCATCTTTCTTCTCCTTCT+AGG | - | chr7_1:79251804-79251823 | None:intergenic | 45.0% | |
| ACTCTTTCTCTCGTCCATTC+AGG | + | chr7_1:79251856-79251875 | Msa1041680:CDS | 45.0% | |
| TCTCGTCCATTCAGGAAGAA+GGG | + | chr7_1:79251864-79251883 | Msa1041680:CDS | 45.0% | |
| !! | GTGATAGGTTCTGAGGTAAG+TGG | - | chr7_1:79251904-79251923 | None:intergenic | 45.0% |
| GACATAATCGCCGATGTGAT+AGG | - | chr7_1:79251919-79251938 | None:intergenic | 45.0% | |
| TCGGCGATTATGTCGATATC+AGG | + | chr7_1:79251925-79251944 | Msa1041680:CDS | 45.0% | |
| CGGCGATTATGTCGATATCA+GGG | + | chr7_1:79251926-79251945 | Msa1041680:CDS | 45.0% | |
| !! | GTTAACGGTGCCGTTCATAA+GGG | + | chr7_1:79251948-79251967 | Msa1041680:CDS | 45.0% |
| GTGTGGCATACCCTTATGAA+CGG | - | chr7_1:79251961-79251980 | None:intergenic | 45.0% | |
| ATGCCACACAAGTTCTACCA+TGG | + | chr7_1:79251972-79251991 | Msa1041680:CDS | 45.0% | |
| TGCCACACAAGTTCTACCAT+GGG | + | chr7_1:79251973-79251992 | Msa1041680:CDS | 45.0% | |
| CTCAACACCAATAGCACGTT+TGG | - | chr7_1:79252024-79252043 | None:intergenic | 45.0% | |
| !! | CAAACGTGCTATTGGTGTTG+AGG | + | chr7_1:79252022-79252041 | Msa1041680:CDS | 45.0% |
| GAAGAGAATCCATGTTCGAG+TGG | + | chr7_1:79252672-79252691 | Msa1041680:CDS | 45.0% | |
| TAACATGCTCCACTCGAACA+TGG | - | chr7_1:79252684-79252703 | None:intergenic | 45.0% | |
| TGGAGCATGTTATGCCATCT+AGG | + | chr7_1:79252692-79252711 | Msa1041680:CDS | 45.0% | |
| TAAGGCTGATGCTAAGGCAA+AGG | + | chr7_1:79252759-79252778 | Msa1041680:CDS | 45.0% | |
| AAGGCTGATGCTAAGGCAAA+GGG | + | chr7_1:79252760-79252779 | Msa1041680:CDS | 45.0% | |
| AAACCAGGTTTAGGTCCTTC+TGG | - | chr7_1:79252811-79252830 | None:intergenic | 45.0% | |
| AGGACCTAAACCTGGTTTCA+TGG | + | chr7_1:79252813-79252832 | Msa1041680:CDS | 45.0% | |
| CATGGTTGAAGGAGCTACAT+TGG | + | chr7_1:79252831-79252850 | Msa1041680:CDS | 45.0% | |
| TGCGACGCAAAAACCCTAGA+AGG | + | chr7_1:79251787-79251806 | Msa1041680:five_prime_UTR | 50.0% | |
| GATCTCAAACCATGACCAGC+CGG | - | chr7_1:79251825-79251844 | None:intergenic | 50.0% | |
| CTCTCGTCCATTCAGGAAGA+AGG | + | chr7_1:79251863-79251882 | Msa1041680:CDS | 50.0% | |
| !! | GGTTAACGGTGCCGTTCATA+AGG | + | chr7_1:79251947-79251966 | Msa1041680:CDS | 50.0% |
| AAGTTCTACCATGGGCGTAC+CGG | + | chr7_1:79251981-79252000 | Msa1041680:CDS | 50.0% | |
| CTTCCTCAAACGGAACTCCT+CGG | - | chr7_1:79252722-79252741 | None:intergenic | 50.0% | |
| AAGCCAGAAGGACCTAAACC+TGG | + | chr7_1:79252805-79252824 | Msa1041680:CDS | 50.0% | |
| GCTCCTTCAACCATGAAACC+AGG | - | chr7_1:79252826-79252845 | None:intergenic | 50.0% | |
| TTCGTATTGCTTGTGGGTCG+TGG | + | chr7_1:79253073-79253092 | Msa1041680:three_prime_UTR | 50.0% | |
| !! | GTGGCACTGATCGTTACGAT+GGG | + | chr7_1:79253092-79253111 | Msa1041680:three_prime_UTR | 50.0% |
| ! | GTTTGTTGCGTTGCTGCTGA+CGG | + | chr7_1:79253145-79253164 | Msa1041680:three_prime_UTR | 50.0% |
| TTTGTTGCGTTGCTGCTGAC+GGG | + | chr7_1:79253146-79253165 | Msa1041680:three_prime_UTR | 50.0% | |
| TGCGACGCAAAAACCCTAGA+AGG | + | chr7_1:79251787-79251806 | Msa1041680:five_prime_UTR | 50.0% | |
| GATCTCAAACCATGACCAGC+CGG | - | chr7_1:79251825-79251844 | None:intergenic | 50.0% | |
| CTCTCGTCCATTCAGGAAGA+AGG | + | chr7_1:79251863-79251882 | Msa1041680:CDS | 50.0% | |
| !! | GGTTAACGGTGCCGTTCATA+AGG | + | chr7_1:79251947-79251966 | Msa1041680:CDS | 50.0% |
| AAGTTCTACCATGGGCGTAC+CGG | + | chr7_1:79251981-79252000 | Msa1041680:CDS | 50.0% | |
| CTTCCTCAAACGGAACTCCT+CGG | - | chr7_1:79252722-79252741 | None:intergenic | 50.0% | |
| AAGCCAGAAGGACCTAAACC+TGG | + | chr7_1:79252805-79252824 | Msa1041680:CDS | 50.0% | |
| GCTCCTTCAACCATGAAACC+AGG | - | chr7_1:79252826-79252845 | None:intergenic | 50.0% | |
| TTCGTATTGCTTGTGGGTCG+TGG | + | chr7_1:79253073-79253092 | Msa1041680:three_prime_UTR | 50.0% | |
| !! | GTGGCACTGATCGTTACGAT+GGG | + | chr7_1:79253092-79253111 | Msa1041680:three_prime_UTR | 50.0% |
| ! | GTTTGTTGCGTTGCTGCTGA+CGG | + | chr7_1:79253145-79253164 | Msa1041680:three_prime_UTR | 50.0% |
| TTTGTTGCGTTGCTGCTGAC+GGG | + | chr7_1:79253146-79253165 | Msa1041680:three_prime_UTR | 50.0% | |
| AGGAGAAGAAAGATGCCGGC+TGG | + | chr7_1:79251807-79251826 | Msa1041680:exon | 55.0% | |
| ! | AGAAAGATGCCGGCTGGTCA+TGG | + | chr7_1:79251813-79251832 | Msa1041680:exon | 55.0% |
| !! | GGTTCTGAGGTAAGTGGCGA+GGG | - | chr7_1:79251898-79251917 | None:intergenic | 55.0% |
| !! | AGGTTCTGAGGTAAGTGGCG+AGG | - | chr7_1:79251899-79251918 | None:intergenic | 55.0% |
| CGCCGATGTGATAGGTTCTG+AGG | - | chr7_1:79251911-79251930 | None:intergenic | 55.0% | |
| CGCCCATGGTAGAACTTGTG+TGG | - | chr7_1:79251978-79251997 | None:intergenic | 55.0% | |
| GGTAACGTTCCAGACACGAC+CGG | - | chr7_1:79252003-79252022 | None:intergenic | 55.0% | |
| TATGCCATCTAGGTGCACCG+AGG | + | chr7_1:79252702-79252721 | Msa1041680:CDS | 55.0% | |
| ! | AACTCCTCGGTGCACCTAGA+TGG | - | chr7_1:79252709-79252728 | None:intergenic | 55.0% |
| !! | CGTGGCACTGATCGTTACGA+TGG | + | chr7_1:79253091-79253110 | Msa1041680:three_prime_UTR | 55.0% |
| AGGAGAAGAAAGATGCCGGC+TGG | + | chr7_1:79251807-79251826 | Msa1041680:exon | 55.0% | |
| ! | AGAAAGATGCCGGCTGGTCA+TGG | + | chr7_1:79251813-79251832 | Msa1041680:exon | 55.0% |
| !! | GGTTCTGAGGTAAGTGGCGA+GGG | - | chr7_1:79251898-79251917 | None:intergenic | 55.0% |
| !! | AGGTTCTGAGGTAAGTGGCG+AGG | - | chr7_1:79251899-79251918 | None:intergenic | 55.0% |
| CGCCGATGTGATAGGTTCTG+AGG | - | chr7_1:79251911-79251930 | None:intergenic | 55.0% | |
| CGCCCATGGTAGAACTTGTG+TGG | - | chr7_1:79251978-79251997 | None:intergenic | 55.0% | |
| GGTAACGTTCCAGACACGAC+CGG | - | chr7_1:79252003-79252022 | None:intergenic | 55.0% | |
| TATGCCATCTAGGTGCACCG+AGG | + | chr7_1:79252702-79252721 | Msa1041680:CDS | 55.0% | |
| ! | AACTCCTCGGTGCACCTAGA+TGG | - | chr7_1:79252709-79252728 | None:intergenic | 55.0% |
| !! | CGTGGCACTGATCGTTACGA+TGG | + | chr7_1:79253091-79253110 | Msa1041680:three_prime_UTR | 55.0% |
| GCACCGAGGAGTTCCGTTTG+AGG | + | chr7_1:79252716-79252735 | Msa1041680:CDS | 60.0% | |
| AGCACCAAGCGCAAGCCAGA+AGG | + | chr7_1:79252793-79252812 | Msa1041680:CDS | 60.0% | |
| !! | AGGTCCTTCTGGCTTGCGCT+TGG | - | chr7_1:79252800-79252819 | None:intergenic | 60.0% |
| GCACCGAGGAGTTCCGTTTG+AGG | + | chr7_1:79252716-79252735 | Msa1041680:CDS | 60.0% | |
| AGCACCAAGCGCAAGCCAGA+AGG | + | chr7_1:79252793-79252812 | Msa1041680:CDS | 60.0% | |
| !! | AGGTCCTTCTGGCTTGCGCT+TGG | - | chr7_1:79252800-79252819 | None:intergenic | 60.0% |
| AGACACGACCGGTACGCCCA+TGG | - | chr7_1:79251992-79252011 | None:intergenic | 65.0% | |
| ! | ATGGGCGTACCGGTCGTGTC+TGG | + | chr7_1:79251991-79252010 | Msa1041680:CDS | 65.0% |
| AGACACGACCGGTACGCCCA+TGG | - | chr7_1:79251992-79252011 | None:intergenic | 65.0% | |
| ! | ATGGGCGTACCGGTCGTGTC+TGG | + | chr7_1:79251991-79252010 | Msa1041680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79251663 | 79253200 | 79251663 | ID=Msa1041680;Name=Msa1041680 |
| chr7_1 | mRNA | 79251663 | 79253200 | 79251663 | ID=Msa1041680-mRNA-1;Parent=Msa1041680;Name=Msa1041680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|1|2|291|164 |
| chr7_1 | exon | 79251663 | 79252055 | 79251663 | ID=Msa1041680-mRNA-1:exon:21308;Parent=Msa1041680-mRNA-1 |
| chr7_1 | exon | 79252652 | 79253200 | 79252652 | ID=Msa1041680-mRNA-1:exon:21309;Parent=Msa1041680-mRNA-1 |
| chr7_1 | five_prime_UTR | 79251663 | 79251818 | 79251663 | ID=Msa1041680-mRNA-1:five_prime_utr;Parent=Msa1041680-mRNA-1 |
| chr7_1 | CDS | 79251819 | 79252055 | 79251819 | ID=Msa1041680-mRNA-1:cds;Parent=Msa1041680-mRNA-1 |
| chr7_1 | CDS | 79252652 | 79252909 | 79252652 | ID=Msa1041680-mRNA-1:cds;Parent=Msa1041680-mRNA-1 |
| chr7_1 | three_prime_UTR | 79252910 | 79253200 | 79252910 | ID=Msa1041680-mRNA-1:three_prime_utr;Parent=Msa1041680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
