AlfalfaGEDB | Msa0003330

M. sativa cultivar zhongmu-4 / Msa0003330

KEGG: K02985
GO: GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF07650.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003330	sp\|Q9FJA6\|RS33_ARATH	88.412	233	27	0	1	233	1	233	4.58e-152	426

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001760	Msa0003330	0.881983	1.524924e-70	-8.615850e-47
Msa0003330	Msa0016350	0.807427	5.082406e-50	-8.615850e-47
Msa0003330	Msa0027590	0.885061	1.124952e-71	-8.615850e-47
Msa0003330	Msa0040220	0.800680	1.286693e-48	-8.615850e-47
Msa0003330	Msa0042510	0.852101	5.758042e-61	-8.615850e-47
Msa0003330	Msa0065110	0.857707	1.359104e-62	-8.615850e-47
Msa0003330	Msa0072570	0.807589	4.695127e-50	-8.615850e-47
Msa0003330	Msa0075350	0.856917	2.326104e-62	-8.615850e-47
Msa0003330	Msa0079560	0.841088	5.873594e-58	-8.615850e-47
Msa0003330	Msa0087910	0.814328	1.629062e-51	-8.615850e-47
Msa0003330	Msa0094210	0.817215	3.701536e-52	-8.615850e-47
Msa0003330	Msa0127230	0.825826	3.792962e-54	-8.615850e-47
Msa0003330	Msa0128330	0.869981	2.059194e-66	-8.615850e-47
Msa0003330	Msa0132460	0.808268	3.366979e-50	-8.615850e-47
Msa0003330	Msa0134580	0.833390	5.481331e-56	-8.615850e-47
Msa0003330	Msa0146610	0.865760	4.675690e-65	-8.615850e-47
Msa0003330	Msa0167860	0.892187	2.000532e-74	-8.615850e-47
Msa0003330	Msa0168320	0.863615	2.194299e-64	-8.615850e-47
Msa0003330	Msa0174580	0.869253	3.555536e-66	-8.615850e-47
Msa0003330	Msa0182050	0.814729	1.328378e-51	-8.615850e-47
Msa0003330	Msa0182100	0.811385	7.188975e-51	-8.615850e-47
Msa0003330	Msa0191450	0.882625	8.904934e-71	-8.615850e-47
Msa0003330	Msa0191550	0.874402	6.946660e-68	-8.615850e-47
Msa0003330	Msa0192300	0.894927	1.554822e-75	-8.615850e-47
Msa0003330	Msa0194940	0.816758	4.688810e-52	-8.615850e-47
Msa0003330	Msa0195030	0.829959	3.843267e-55	-8.615850e-47
Msa0003330	Msa0216200	0.837077	6.431193e-57	-8.615850e-47
Msa0003330	Msa0233550	0.883150	5.722638e-71	-8.615850e-47
Msa0003330	Msa0237180	0.807517	4.862783e-50	-8.615850e-47
Msa0003330	Msa0239420	0.895791	6.847592e-76	-8.615850e-47
Msa0003330	Msa0274940	0.817488	3.212643e-52	-8.615850e-47
Msa0003330	Msa0277600	0.834962	2.212656e-56	-8.615850e-47
Msa0003330	Msa0281370	0.847677	9.937074e-60	-8.615850e-47
Msa0003330	Msa0301250	0.903752	2.505473e-79	-8.615850e-47
Msa0003330	Msa0313060	0.895767	7.005578e-76	-8.615850e-47
Msa0003330	Msa0315430	0.883957	2.888023e-71	-8.615850e-47
Msa0003330	Msa0315660	0.812900	3.358984e-51	-8.615850e-47
Msa0003330	Msa0321270	0.806080	9.785025e-50	-8.615850e-47
Msa0003330	Msa0369410	0.805583	1.244799e-49	-8.615850e-47
Msa0003330	Msa0371490	0.851215	1.025868e-60	-8.615850e-47
Msa0003330	Msa0376850	0.827990	1.152982e-54	-8.615850e-47
Msa0003330	Msa0377370	0.807585	4.703806e-50	-8.615850e-47
Msa0003330	Msa0377520	0.857005	2.191007e-62	-8.615850e-47
Msa0003330	Msa0382670	0.877275	7.162366e-69	-8.615850e-47
Msa0003330	Msa0387290	0.816202	6.243402e-52	-8.615850e-47
Msa0003330	Msa0389800	0.814661	1.375260e-51	-8.615850e-47
Msa0003330	Msa0416470	0.863093	3.182725e-64	-8.615850e-47
Msa0003330	Msa0426090	0.841666	4.137480e-58	-8.615850e-47
Msa0003330	Msa0426250	0.823895	1.082546e-53	-8.615850e-47
Msa0003330	Msa0436830	-0.800075	1.708380e-48	-8.615850e-47
Msa0003330	Msa0468140	0.820648	6.137391e-53	-8.615850e-47
Msa0003330	Msa0472480	0.842774	2.105145e-58	-8.615850e-47
Msa0003330	Msa0481520	0.890003	1.458851e-73	-8.615850e-47
Msa0003330	Msa0481800	0.809039	2.304491e-50	-8.615850e-47
Msa0003330	Msa0482560	0.822427	2.383231e-53	-8.615850e-47
Msa0003330	Msa0511760	0.868991	4.324330e-66	-8.615850e-47
Msa0003330	Msa0516830	0.827845	1.249296e-54	-8.615850e-47
Msa0003330	Msa0517480	0.867388	1.419888e-65	-8.615850e-47
Msa0003330	Msa0529900	0.806787	6.943374e-50	-8.615850e-47
Msa0003330	Msa0547920	0.847002	1.522599e-59	-8.615850e-47
Msa0003330	Msa0573550	0.904688	9.447709e-80	-8.615850e-47
Msa0003330	Msa0574780	0.856495	3.095610e-62	-8.615850e-47
Msa0003330	Msa0578010	0.801792	7.618936e-49	-8.615850e-47
Msa0003330	Msa0579830	0.840394	8.928315e-58	-8.615850e-47
Msa0003330	Msa0582070	0.811574	6.540724e-51	-8.615850e-47
Msa0003330	Msa0597240	0.857086	2.074296e-62	-8.615850e-47
Msa0003330	Msa0602900	0.837429	5.224606e-57	-8.615850e-47
Msa0003330	Msa0605890	0.830441	2.932470e-55	-8.615850e-47
Msa0003330	Msa0619230	0.885294	9.207106e-72	-8.615850e-47
Msa0003330	Msa0621190	0.847830	9.021882e-60	-8.615850e-47
Msa0003330	Msa0622230	0.812156	4.885709e-51	-8.615850e-47
Msa0003330	Msa0623370	0.807807	4.220467e-50	-8.615850e-47
Msa0003330	Msa0643960	0.838551	2.688193e-57	-8.615850e-47
Msa0003330	Msa0649890	0.847194	1.349340e-59	-8.615850e-47
Msa0003330	Msa0656450	0.837379	5.382176e-57	-8.615850e-47
Msa0003330	Msa0686550	0.829719	4.398412e-55	-8.615850e-47
Msa0003330	Msa0691760	0.825696	4.071519e-54	-8.615850e-47
Msa0003330	Msa0694400	0.875421	3.123321e-68	-8.615850e-47
Msa0003330	Msa0704860	0.820804	5.650526e-53	-8.615850e-47
Msa0003330	Msa0705800	0.835803	1.356219e-56	-8.615850e-47
Msa0003330	Msa0708630	0.809282	2.044046e-50	-8.615850e-47
Msa0003330	Msa0748350	0.832917	7.190804e-56	-8.615850e-47
Msa0003330	Msa0752240	0.800550	1.367502e-48	-8.615850e-47
Msa0003330	Msa0758420	0.893612	5.342746e-75	-8.615850e-47
Msa0003330	Msa0788380	0.869229	3.619749e-66	-8.615850e-47
Msa0003330	Msa0822580	0.864584	1.094283e-64	-8.615850e-47
Msa0003330	Msa0838070	0.850704	1.429562e-60	-8.615850e-47
Msa0003330	Msa0880050	0.836004	1.206570e-56	-8.615850e-47
Msa0003330	Msa0929680	0.812549	4.009215e-51	-8.615850e-47
Msa0003330	Msa0929700	0.902300	1.115980e-78	-8.615850e-47
Msa0003330	Msa0929790	0.833619	4.804944e-56	-8.615850e-47
Msa0003330	Msa0930360	0.825543	4.427708e-54	-8.615850e-47
Msa0003330	Msa0930790	0.886418	3.478970e-72	-8.615850e-47
Msa0003330	Msa0979820	0.801440	8.995723e-49	-8.615850e-47
Msa0003330	Msa0982260	0.813408	2.599156e-51	-8.615850e-47
Msa0003330	Msa1037290	0.808524	2.969640e-50	-8.615850e-47
Msa0003330	Msa1040160	0.807163	5.779763e-50	-8.615850e-47
Msa0003330	Msa1041680	0.817304	3.533986e-52	-8.615850e-47
Msa0003330	Msa1041830	0.801539	8.586700e-49	-8.615850e-47
Msa0003330	Msa1054280	0.809380	1.947242e-50	-8.615850e-47
Msa0003330	Msa1082050	0.806919	6.510526e-50	-8.615850e-47
Msa0003330	Msa1082170	0.867304	1.510925e-65	-8.615850e-47
Msa0003330	Msa1083370	0.813924	2.000657e-51	-8.615850e-47
Msa0003330	Msa1124980	0.833773	4.398436e-56	-8.615850e-47
Msa0003330	Msa1126520	0.814828	1.262623e-51	-8.615850e-47
Msa0003330	Msa1126690	0.829705	4.432694e-55	-8.615850e-47
Msa0003330	Msa1164150	0.846390	2.237959e-59	-8.615850e-47
Msa0003330	Msa1165640	0.816968	4.205906e-52	-8.615850e-47
Msa0003330	Msa1166570	0.820345	7.205225e-53	-8.615850e-47
Msa0003330	Msa1167360	0.841599	4.308615e-58	-8.615850e-47
Msa0003330	Msa1180000	0.859176	4.955752e-63	-8.615850e-47
Msa0003330	Msa1186030	0.847841	8.957240e-60	-8.615850e-47
Msa0003330	Msa1218170	0.807744	4.352555e-50	-8.615850e-47
Msa0003330	Msa1235950	0.861564	9.387961e-64	-8.615850e-47
Msa0003330	Msa1235980	0.873443	1.464150e-67	-8.615850e-47
Msa0003330	Msa1237040	0.848841	4.739758e-60	-8.615850e-47
Msa0003330	Msa1240270	0.860360	2.180545e-63	-8.615850e-47
Msa0003330	Msa1258540	0.874517	6.351515e-68	-8.615850e-47
Msa0003330	Msa1263620	0.806125	9.572369e-50	-8.615850e-47
Msa0003330	Msa1270640	0.846428	2.185487e-59	-8.615850e-47
Msa0003330	Msa1270710	0.847822	9.065233e-60	-8.615850e-47
Msa0003330	Msa1307730	0.819378	1.198871e-52	-8.615850e-47
Msa0003330	Msa1316100	0.838248	3.219123e-57	-8.615850e-47
Msa0003330	Msa1317390	0.868412	6.657026e-66	-8.615850e-47
Msa0003330	Msa1351020	0.875256	3.556625e-68	-8.615850e-47
Msa0003330	Msa1363910	0.813406	2.600813e-51	-8.615850e-47
Msa0003330	Msa1368920	0.811535	6.669779e-51	-8.615850e-47
Msa0003330	Msa1385480	0.853748	1.946324e-61	-8.615850e-47
Msa0003330	Msa1387750	0.840415	8.813967e-58	-8.615850e-47
Msa0003330	Msa1390760	0.883444	4.465749e-71	-8.615850e-47
Msa0003330	Msa1407550	0.866340	3.062586e-65	-8.615850e-47
Msa0003330	Msa1413570	0.838957	2.111645e-57	-8.615850e-47
Msa0003330	Msa1423050	0.837602	4.718704e-57	-8.615850e-47
Msa0003330	Msa1432310	0.866752	2.265793e-65	-8.615850e-47
Msa0003330	Msa1446410	0.878621	2.421371e-69	-8.615850e-47
Msa0003330	Msa1449160	0.804636	1.964645e-49	-8.615850e-47
Msa0003330	Msa1450560	0.804429	2.169507e-49	-8.615850e-47
Msa0003330	Msa1453530	0.815521	8.859418e-52	-8.615850e-47
Msa0003330	Msa1463570	0.871131	8.631277e-67	-8.615850e-47
Msa0003330	Msa1463580	0.809575	1.768121e-50	-8.615850e-47
Msa0003330	Msa1465700	0.881325	2.636078e-70	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003330	MtrunA17_Chr1g0168341	99.582	239	1	0	1	239	1	239	5.87e-177	485
Msa0003330	MtrunA17_Chr1g0155631	99.163	239	2	0	1	239	1	239	7.80e-177	485
Msa0003330	MtrunA17_Chr6g0469891	94.444	234	8	1	5	238	1	229	1.10e-162	449
Msa0003330	MtrunA17_Chr6g0469871	94.444	234	8	1	5	238	1	229	1.10e-162	449
Msa0003330	MtrunA17_Chr1g0210251	86.383	235	31	1	1	234	1	235	4.06e-150	417

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0003330	AT5G35530.1	88.412	233	27	1	233	1	233	4.66e-153	426
Msa0003330	AT2G31610.1	88.987	227	25	1	227	1	227	3.98e-149	416
Msa0003330	AT3G53870.1	92.166	217	17	1	217	1	217	1.58e-148	414

Find 86 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAGGGTGTTCTTGGTATTA+AGG	0.259759	1_1:+5840521	Msa0003330:intron
TTAGGACCTTGCTTTCCTTT+AGG	0.279269	1_1:-5840567	None:intergenic
TAATACACGGGAGGAAATTA+TGG	0.314729	1_1:-5840881	None:intergenic
GCTATTCCGGTGTTGAGGTT+AGG	0.315077	1_1:+5839902	Msa0003330:CDS
CTTGCTGAAGATGGCTATTC+CGG	0.326131	1_1:+5839889	Msa0003330:CDS
TCCCCTGTTGTTAACCTTCT+CGG	0.326817	1_1:-5840158	None:intergenic
CGGTGTGTTGAGGTTTGTTA+TGG	0.332791	1_1:+5840255	Msa0003330:CDS
CATGTTTGCAGATTTAGCTT+GGG	0.336587	1_1:-5839684	None:intergenic
AGGCATGTTCTAAGAGTATA+TGG	0.340226	1_1:+5840951	Msa0003330:three_prime_UTR
ACTCGTACCCAAGCTGTTCT+TGG	0.341791	1_1:+5839961	Msa0003330:CDS
GATGGATGGATGTTTATATA+AGG	0.347163	1_1:-5839581	None:intergenic
GACGTACTCTTCCTCCTCCT+TGG	0.347648	1_1:-5840625	None:intergenic
AAACCTCAACACACCGTAAC+AGG	0.355716	1_1:-5840248	None:intergenic
CTCATCTGGCCAACCTGTTA+AGG	0.357556	1_1:+5840369	Msa0003330:CDS
GAAACTGCAAACCCTAGTTT+TGG	0.367479	1_1:-5839617	None:intergenic
GTAGCCATCCTTGAACTTCA+TGG	0.370346	1_1:-5840341	None:intergenic
CTATTCCGGTGTTGAGGTTA+GGG	0.371348	1_1:+5839903	Msa0003330:CDS
CCATGTTTGCAGATTTAGCT+TGG	0.385717	1_1:-5839685	None:intergenic
GGATGTGAGGTTATTGTTAG+TGG	0.386156	1_1:+5840292	Msa0003330:CDS
CTAACCATTTCTCCAAAACT+AGG	0.397229	1_1:+5839605	Msa0003330:five_prime_UTR
GAGTCAATGTAATCCTTAAC+AGG	0.402767	1_1:-5840382	None:intergenic
ATCCTTGAACTTCATGGACT+TGG	0.424680	1_1:-5840335	None:intergenic
GTGTGAATGGTAACAATATC+AGG	0.428011	1_1:-5840600	None:intergenic
AGGTGAAGATTATGCTTGAC+TGG	0.432560	1_1:+5840541	Msa0003330:CDS
CTCCTCCTTGGGAGTGTGAA+TGG	0.434959	1_1:-5840613	None:intergenic
ACCAGAGAGCTTGCTGAAGA+TGG	0.438488	1_1:+5839880	Msa0003330:CDS
AGCTGAGTATAACATTATCT+TGG	0.450468	1_1:-5840823	None:intergenic
TCTCTTCGTTACAAGCTTCT+CGG	0.453319	1_1:+5840205	Msa0003330:CDS
ATGCCGAGAAGGTTAACAAC+AGG	0.456910	1_1:+5840155	Msa0003330:CDS
CAAACAACAGGGACTGGGAC+AGG	0.457728	1_1:-5840684	None:intergenic
ACGTACTCTTCCTCCTCCTT+GGG	0.464887	1_1:-5840624	None:intergenic
GATGGCTACATGATCTCATC+TGG	0.466529	1_1:+5840355	Msa0003330:CDS
GAGAAATGGTTAGGGATGGA+TGG	0.468403	1_1:-5839595	None:intergenic
TTGAGGTTTGTTATGGAAAG+TGG	0.475116	1_1:+5840262	Msa0003330:CDS
AATGATTAGGTGAGAAGGGA+AGG	0.478164	1_1:+5840065	Msa0003330:intron
TTTGGAGAAATGGTTAGGGA+TGG	0.483044	1_1:-5839599	None:intergenic
GATTAGGTGAGAAGGGAAGG+AGG	0.484267	1_1:+5840068	Msa0003330:intron
AGGAGGAGGAAGAGTACGTC+AGG	0.486037	1_1:+5840628	Msa0003330:CDS
TATAGTTCAACACTGTTCTC+AGG	0.488325	1_1:-5840133	None:intergenic
GCCATCTTCAGCAAGCTCTC+TGG	0.491889	1_1:-5839881	None:intergenic
AGCCAAGTCCATGAAGTTCA+AGG	0.492737	1_1:+5840333	Msa0003330:CDS
TGTTATGGAAAGTGGTGCTA+AGG	0.499768	1_1:+5840270	Msa0003330:CDS
TAGACATGTTCTTCTCAGAC+AGG	0.500852	1_1:+5840411	Msa0003330:CDS
TTGTTGCAGTTCGTCGCTGA+CGG	0.501712	1_1:+5839826	Msa0003330:intron
ATGTTTGCAGATTTAGCTTG+GGG	0.508108	1_1:-5839683	None:intergenic
TGACCTCAGTAGTCCAGAAA+AGG	0.517945	1_1:+5840101	Msa0003330:CDS
CCAAGCTAAATCTGCAAACA+TGG	0.522664	1_1:+5839685	Msa0003330:exon
CTACGAACCAAGAACAGCTT+GGG	0.525454	1_1:-5839968	None:intergenic
GATGATGATCTCAGTGCGCA+TGG	0.527229	1_1:-5839932	None:intergenic
TCATTTGCAACAACAGCAGC+AGG	0.528096	1_1:-5840651	None:intergenic
GATTAATGATTAGGTGAGAA+GGG	0.529224	1_1:+5840061	Msa0003330:intron
TAACCATTTCTCCAAAACTA+GGG	0.529900	1_1:+5839606	Msa0003330:five_prime_UTR
TTTCTTCGCTGAATTGAATG+AGG	0.530015	1_1:+5839852	Msa0003330:CDS
AATGGTAACAATATCAGGTA+GGG	0.532486	1_1:-5840595	None:intergenic
TAAGATGTAAATATTAGATA+AGG	0.537093	1_1:-5840908	None:intergenic
GCTGTTCGCAGAGCCTGTTA+CGG	0.553152	1_1:+5840235	Msa0003330:CDS
GAGCCTGTTACGGTGTGTTG+AGG	0.556363	1_1:+5840245	Msa0003330:CDS
TGATTAATGATTAGGTGAGA+AGG	0.556668	1_1:+5840060	Msa0003330:intron
ATGCTTGACTGGGATCCTAA+AGG	0.556783	1_1:+5840552	Msa0003330:CDS
TGTTGTTGCAAATGATATTG+AGG	0.562213	1_1:+5840659	Msa0003330:CDS
ACTACGAACCAAGAACAGCT+TGG	0.565206	1_1:-5839969	None:intergenic
TTTCTCAAACAACAGGGACT+GGG	0.568525	1_1:-5840689	None:intergenic
GTTATGGAAAGTGGTGCTAA+GGG	0.582081	1_1:+5840271	Msa0003330:CDS
GAATGGTAACAATATCAGGT+AGG	0.585408	1_1:-5840596	None:intergenic
AGATGGCTATTCCGGTGTTG+AGG	0.587442	1_1:+5839897	Msa0003330:CDS
GGATGGATGTTTATATAAGG+TGG	0.588162	1_1:-5839578	None:intergenic
CATTCACACTCCCAAGGAGG+AGG	0.589806	1_1:+5840614	Msa0003330:CDS
CAATGTAATCCTTAACAGGT+TGG	0.596885	1_1:-5840378	None:intergenic
TGGGATCCTAAAGGAAAGCA+AGG	0.601952	1_1:+5840561	Msa0003330:CDS
GGTGAAGATTATGCTTGACT+GGG	0.603451	1_1:+5840542	Msa0003330:CDS
AAACAACAGGGACTGGGACA+GGG	0.607283	1_1:-5840683	None:intergenic
TGTTGAACTATATGCCGAGA+AGG	0.615665	1_1:+5840144	Msa0003330:CDS
ATGGTAACAATATCAGGTAG+GGG	0.623679	1_1:-5840594	None:intergenic
TGTTACCATTCACACTCCCA+AGG	0.629341	1_1:+5840608	Msa0003330:CDS
AAGTCCATGAAGTTCAAGGA+TGG	0.640546	1_1:+5840337	Msa0003330:CDS
ATGATGATCTCAGTGCGCAT+GGG	0.667262	1_1:-5839931	None:intergenic
AAGTGGTGCTAAGGGATGTG+AGG	0.670962	1_1:+5840279	Msa0003330:CDS
CTTCGTTACAAGCTTCTCGG+AGG	0.671532	1_1:+5840208	Msa0003330:CDS
TGCCGAGAAGGTTAACAACA+GGG	0.674234	1_1:+5840156	Msa0003330:CDS
AGATAAGGAACATAATACAC+GGG	0.677461	1_1:-5840893	None:intergenic
TAAGGAACATAATACACGGG+AGG	0.680426	1_1:-5840890	None:intergenic
AGTAACCCTAACCTCAACAC+CGG	0.681090	1_1:-5839908	None:intergenic
GCCGAGAAGGTTAACAACAG+GGG	0.682645	1_1:+5840157	Msa0003330:CDS
TGTTTGCAGATTTAGCTTGG+GGG	0.686534	1_1:-5839682	None:intergenic
TAGATAAGGAACATAATACA+CGG	0.690016	1_1:-5840894	None:intergenic
TACCATTCACACTCCCAAGG+AGG	0.690748	1_1:+5840611	Msa0003330:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGTTTTTATATGAATTTAAA+TGG	+	chr1_1:5840030-5840049	Msa0003330:intron	10.0%
!!!	TGTTTTTATATGAATTTAAA+TGG	+	chr1_1:5840030-5840049	Msa0003330:intron	10.0%
!!!	ATTATTACCTTTATTTTGTA+GGG	+	chr1_1:5840504-5840523	Msa0003330:intron	15.0%
!!	TAAGATGTAAATATTAGATA+AGG	-	chr1_1:5840911-5840930	None:intergenic	15.0%
!!!	ATTATTACCTTTATTTTGTA+GGG	+	chr1_1:5840504-5840523	Msa0003330:intron	15.0%
!!	TAAGATGTAAATATTAGATA+AGG	-	chr1_1:5840911-5840930	None:intergenic	15.0%
!!!	GATTATTACCTTTATTTTGT+AGG	+	chr1_1:5840503-5840522	Msa0003330:intron	20.0%
!!!	TATATGGATTTTTGCATATT+TGG	+	chr1_1:5840967-5840986	Msa0003330:three_prime_UTR	20.0%
!!!	ATATGGATTTTTGCATATTT+GGG	+	chr1_1:5840968-5840987	Msa0003330:three_prime_UTR	20.0%
!!!	GATTATTACCTTTATTTTGT+AGG	+	chr1_1:5840503-5840522	Msa0003330:intron	20.0%
!!!	TATATGGATTTTTGCATATT+TGG	+	chr1_1:5840967-5840986	Msa0003330:three_prime_UTR	20.0%
!!!	ATATGGATTTTTGCATATTT+GGG	+	chr1_1:5840968-5840987	Msa0003330:three_prime_UTR	20.0%
!	GTTGAATCTGATTAATGATT+AGG	+	chr1_1:5840052-5840071	Msa0003330:intron	25.0%
!!	AAACATTTTCTCAAACAACA+GGG	-	chr1_1:5840698-5840717	None:intergenic	25.0%
!!	AAAACATTTTCTCAAACAAC+AGG	-	chr1_1:5840699-5840718	None:intergenic	25.0%
!	TAGATAAGGAACATAATACA+CGG	-	chr1_1:5840897-5840916	None:intergenic	25.0%
!	GTTGAATCTGATTAATGATT+AGG	+	chr1_1:5840052-5840071	Msa0003330:intron	25.0%
!!	AAACATTTTCTCAAACAACA+GGG	-	chr1_1:5840698-5840717	None:intergenic	25.0%
!!	AAAACATTTTCTCAAACAAC+AGG	-	chr1_1:5840699-5840718	None:intergenic	25.0%
!	TAGATAAGGAACATAATACA+CGG	-	chr1_1:5840897-5840916	None:intergenic	25.0%
	GATGGATGGATGTTTATATA+AGG	-	chr1_1:5839584-5839603	None:intergenic	30.0%
!!!	TAGTTTTGGAGAAATGGTTA+GGG	-	chr1_1:5839606-5839625	None:intergenic	30.0%
	TAACCATTTCTCCAAAACTA+GGG	+	chr1_1:5839606-5839625	Msa0003330:five_prime_UTR	30.0%
	CACTACTAATAGAGATGAAT+TGG	-	chr1_1:5839765-5839784	None:intergenic	30.0%
	TGATTAATGATTAGGTGAGA+AGG	+	chr1_1:5840060-5840079	Msa0003330:intron	30.0%
	GATTAATGATTAGGTGAGAA+GGG	+	chr1_1:5840061-5840080	Msa0003330:intron	30.0%
	AAACCAACAAGGTTGTTATA+GGG	-	chr1_1:5840449-5840468	None:intergenic	30.0%
	AATAACAAACCAAACCAACA+AGG	-	chr1_1:5840460-5840479	None:intergenic	30.0%
	AAGAACACCCTACAAAATAA+AGG	-	chr1_1:5840514-5840533	None:intergenic	30.0%
!!!	TTTATTTTGTAGGGTGTTCT+TGG	+	chr1_1:5840513-5840532	Msa0003330:intron	30.0%
	AATGGTAACAATATCAGGTA+GGG	-	chr1_1:5840598-5840617	None:intergenic	30.0%
	TGTTGTTGCAAATGATATTG+AGG	+	chr1_1:5840659-5840678	Msa0003330:CDS	30.0%
!!	GAGAAAATGTTTTGAGTGTA+TGG	+	chr1_1:5840706-5840725	Msa0003330:exon	30.0%
!	TGTCAGACTTTTGTAGTTTT+CGG	+	chr1_1:5840759-5840778	Msa0003330:three_prime_UTR	30.0%
	AGCTGAGTATAACATTATCT+TGG	-	chr1_1:5840826-5840845	None:intergenic	30.0%
	AGATAAGGAACATAATACAC+GGG	-	chr1_1:5840896-5840915	None:intergenic	30.0%
!!!	GTTTTGTTGATGATATGTTG+AGG	+	chr1_1:5840931-5840950	Msa0003330:three_prime_UTR	30.0%
	GATGGATGGATGTTTATATA+AGG	-	chr1_1:5839584-5839603	None:intergenic	30.0%
!!!	TAGTTTTGGAGAAATGGTTA+GGG	-	chr1_1:5839606-5839625	None:intergenic	30.0%
	TAACCATTTCTCCAAAACTA+GGG	+	chr1_1:5839606-5839625	Msa0003330:five_prime_UTR	30.0%
	CACTACTAATAGAGATGAAT+TGG	-	chr1_1:5839765-5839784	None:intergenic	30.0%
	TGATTAATGATTAGGTGAGA+AGG	+	chr1_1:5840060-5840079	Msa0003330:intron	30.0%
	GATTAATGATTAGGTGAGAA+GGG	+	chr1_1:5840061-5840080	Msa0003330:intron	30.0%
	AAACCAACAAGGTTGTTATA+GGG	-	chr1_1:5840449-5840468	None:intergenic	30.0%
	AATAACAAACCAAACCAACA+AGG	-	chr1_1:5840460-5840479	None:intergenic	30.0%
	AAGAACACCCTACAAAATAA+AGG	-	chr1_1:5840514-5840533	None:intergenic	30.0%
!!!	TTTATTTTGTAGGGTGTTCT+TGG	+	chr1_1:5840513-5840532	Msa0003330:intron	30.0%
	AATGGTAACAATATCAGGTA+GGG	-	chr1_1:5840598-5840617	None:intergenic	30.0%
	TGTTGTTGCAAATGATATTG+AGG	+	chr1_1:5840659-5840678	Msa0003330:CDS	30.0%
!!	GAGAAAATGTTTTGAGTGTA+TGG	+	chr1_1:5840706-5840725	Msa0003330:exon	30.0%
!	TGTCAGACTTTTGTAGTTTT+CGG	+	chr1_1:5840759-5840778	Msa0003330:three_prime_UTR	30.0%
	AGCTGAGTATAACATTATCT+TGG	-	chr1_1:5840826-5840845	None:intergenic	30.0%
	AGATAAGGAACATAATACAC+GGG	-	chr1_1:5840896-5840915	None:intergenic	30.0%
!!!	GTTTTGTTGATGATATGTTG+AGG	+	chr1_1:5840931-5840950	Msa0003330:three_prime_UTR	30.0%
	GGATGGATGTTTATATAAGG+TGG	-	chr1_1:5839581-5839600	None:intergenic	35.0%
!!!	CTAGTTTTGGAGAAATGGTT+AGG	-	chr1_1:5839607-5839626	None:intergenic	35.0%
	CTAACCATTTCTCCAAAACT+AGG	+	chr1_1:5839605-5839624	Msa0003330:five_prime_UTR	35.0%
!!!	AAACCCTAGTTTTGGAGAAA+TGG	-	chr1_1:5839612-5839631	None:intergenic	35.0%
!!	ATGTTTGCAGATTTAGCTTG+GGG	-	chr1_1:5839686-5839705	None:intergenic	35.0%
!	CATGTTTGCAGATTTAGCTT+GGG	-	chr1_1:5839687-5839706	None:intergenic	35.0%
!!!	CTTTCGCTTTTTGCTCATTT+GGG	-	chr1_1:5839714-5839733	None:intergenic	35.0%
	TTTCTTCGCTGAATTGAATG+AGG	+	chr1_1:5839852-5839871	Msa0003330:CDS	35.0%
!	CAGGAAACTTAAACCTTTTC+TGG	-	chr1_1:5840117-5840136	None:intergenic	35.0%
	TATAGTTCAACACTGTTCTC+AGG	-	chr1_1:5840136-5840155	None:intergenic	35.0%
!!	TTGAGGTTTGTTATGGAAAG+TGG	+	chr1_1:5840262-5840281	Msa0003330:CDS	35.0%
	CAATGTAATCCTTAACAGGT+TGG	-	chr1_1:5840381-5840400	None:intergenic	35.0%
	GAGTCAATGTAATCCTTAAC+AGG	-	chr1_1:5840385-5840404	None:intergenic	35.0%
	TTACCCTATAACAACCTTGT+TGG	+	chr1_1:5840443-5840462	Msa0003330:intron	35.0%
	CAAACCAACAAGGTTGTTAT+AGG	-	chr1_1:5840450-5840469	None:intergenic	35.0%
!	CTATAACAACCTTGTTGGTT+TGG	+	chr1_1:5840448-5840467	Msa0003330:intron	35.0%
	ATGGTAACAATATCAGGTAG+GGG	-	chr1_1:5840597-5840616	None:intergenic	35.0%
	GAATGGTAACAATATCAGGT+AGG	-	chr1_1:5840599-5840618	None:intergenic	35.0%
	GTGTGAATGGTAACAATATC+AGG	-	chr1_1:5840603-5840622	None:intergenic	35.0%
	TAATACACGGGAGGAAATTA+TGG	-	chr1_1:5840884-5840903	None:intergenic	35.0%
!!	AGGCATGTTCTAAGAGTATA+TGG	+	chr1_1:5840951-5840970	Msa0003330:three_prime_UTR	35.0%
	GGATGGATGTTTATATAAGG+TGG	-	chr1_1:5839581-5839600	None:intergenic	35.0%
!!!	CTAGTTTTGGAGAAATGGTT+AGG	-	chr1_1:5839607-5839626	None:intergenic	35.0%
	CTAACCATTTCTCCAAAACT+AGG	+	chr1_1:5839605-5839624	Msa0003330:five_prime_UTR	35.0%
!!!	AAACCCTAGTTTTGGAGAAA+TGG	-	chr1_1:5839612-5839631	None:intergenic	35.0%
!!	ATGTTTGCAGATTTAGCTTG+GGG	-	chr1_1:5839686-5839705	None:intergenic	35.0%
!	CATGTTTGCAGATTTAGCTT+GGG	-	chr1_1:5839687-5839706	None:intergenic	35.0%
!!!	CTTTCGCTTTTTGCTCATTT+GGG	-	chr1_1:5839714-5839733	None:intergenic	35.0%
	TTTCTTCGCTGAATTGAATG+AGG	+	chr1_1:5839852-5839871	Msa0003330:CDS	35.0%
!	CAGGAAACTTAAACCTTTTC+TGG	-	chr1_1:5840117-5840136	None:intergenic	35.0%
	TATAGTTCAACACTGTTCTC+AGG	-	chr1_1:5840136-5840155	None:intergenic	35.0%
!!	TTGAGGTTTGTTATGGAAAG+TGG	+	chr1_1:5840262-5840281	Msa0003330:CDS	35.0%
	CAATGTAATCCTTAACAGGT+TGG	-	chr1_1:5840381-5840400	None:intergenic	35.0%
	GAGTCAATGTAATCCTTAAC+AGG	-	chr1_1:5840385-5840404	None:intergenic	35.0%
	TTACCCTATAACAACCTTGT+TGG	+	chr1_1:5840443-5840462	Msa0003330:intron	35.0%
	CAAACCAACAAGGTTGTTAT+AGG	-	chr1_1:5840450-5840469	None:intergenic	35.0%
!	CTATAACAACCTTGTTGGTT+TGG	+	chr1_1:5840448-5840467	Msa0003330:intron	35.0%
	ATGGTAACAATATCAGGTAG+GGG	-	chr1_1:5840597-5840616	None:intergenic	35.0%
	GAATGGTAACAATATCAGGT+AGG	-	chr1_1:5840599-5840618	None:intergenic	35.0%
	GTGTGAATGGTAACAATATC+AGG	-	chr1_1:5840603-5840622	None:intergenic	35.0%
	TAATACACGGGAGGAAATTA+TGG	-	chr1_1:5840884-5840903	None:intergenic	35.0%
!!	AGGCATGTTCTAAGAGTATA+TGG	+	chr1_1:5840951-5840970	Msa0003330:three_prime_UTR	35.0%
	TTTGGAGAAATGGTTAGGGA+TGG	-	chr1_1:5839602-5839621	None:intergenic	40.0%
!	GAAACTGCAAACCCTAGTTT+TGG	-	chr1_1:5839620-5839639	None:intergenic	40.0%
!!	TGTTTGCAGATTTAGCTTGG+GGG	-	chr1_1:5839685-5839704	None:intergenic	40.0%
	CCATGTTTGCAGATTTAGCT+TGG	-	chr1_1:5839688-5839707	None:intergenic	40.0%
	CCAAGCTAAATCTGCAAACA+TGG	+	chr1_1:5839685-5839704	Msa0003330:exon	40.0%
!!!	CCTTTCGCTTTTTGCTCATT+TGG	-	chr1_1:5839715-5839734	None:intergenic	40.0%
	CCAAATGAGCAAAAAGCGAA+AGG	+	chr1_1:5839712-5839731	Msa0003330:CDS	40.0%
	AATGATTAGGTGAGAAGGGA+AGG	+	chr1_1:5840065-5840084	Msa0003330:intron	40.0%
!	AAACCTTTTCTGGACTACTG+AGG	-	chr1_1:5840107-5840126	None:intergenic	40.0%
	TGTTGAACTATATGCCGAGA+AGG	+	chr1_1:5840144-5840163	Msa0003330:CDS	40.0%
	TCTCTTCGTTACAAGCTTCT+CGG	+	chr1_1:5840205-5840224	Msa0003330:CDS	40.0%
!	TGTTATGGAAAGTGGTGCTA+AGG	+	chr1_1:5840270-5840289	Msa0003330:CDS	40.0%
!	GTTATGGAAAGTGGTGCTAA+GGG	+	chr1_1:5840271-5840290	Msa0003330:CDS	40.0%
	GGATGTGAGGTTATTGTTAG+TGG	+	chr1_1:5840292-5840311	Msa0003330:CDS	40.0%
	ATCCTTGAACTTCATGGACT+TGG	-	chr1_1:5840338-5840357	None:intergenic	40.0%
	AAGTCCATGAAGTTCAAGGA+TGG	+	chr1_1:5840337-5840356	Msa0003330:CDS	40.0%
	TAGACATGTTCTTCTCAGAC+AGG	+	chr1_1:5840411-5840430	Msa0003330:CDS	40.0%
!	GTAGGGTGTTCTTGGTATTA+AGG	+	chr1_1:5840521-5840540	Msa0003330:intron	40.0%
	AGGTGAAGATTATGCTTGAC+TGG	+	chr1_1:5840541-5840560	Msa0003330:CDS	40.0%
	GGTGAAGATTATGCTTGACT+GGG	+	chr1_1:5840542-5840561	Msa0003330:CDS	40.0%
	TTAGGACCTTGCTTTCCTTT+AGG	-	chr1_1:5840570-5840589	None:intergenic	40.0%
!	ATATCAGGTAGGGGAGTTTT+AGG	-	chr1_1:5840588-5840607	None:intergenic	40.0%
	TTTCTCAAACAACAGGGACT+GGG	-	chr1_1:5840692-5840711	None:intergenic	40.0%
!	TTTTCTCAAACAACAGGGAC+TGG	-	chr1_1:5840693-5840712	None:intergenic	40.0%
	TAAGGAACATAATACACGGG+AGG	-	chr1_1:5840893-5840912	None:intergenic	40.0%
	TTTGGAGAAATGGTTAGGGA+TGG	-	chr1_1:5839602-5839621	None:intergenic	40.0%
!	GAAACTGCAAACCCTAGTTT+TGG	-	chr1_1:5839620-5839639	None:intergenic	40.0%
!!	TGTTTGCAGATTTAGCTTGG+GGG	-	chr1_1:5839685-5839704	None:intergenic	40.0%
	CCATGTTTGCAGATTTAGCT+TGG	-	chr1_1:5839688-5839707	None:intergenic	40.0%
	CCAAGCTAAATCTGCAAACA+TGG	+	chr1_1:5839685-5839704	Msa0003330:exon	40.0%
!!!	CCTTTCGCTTTTTGCTCATT+TGG	-	chr1_1:5839715-5839734	None:intergenic	40.0%
	CCAAATGAGCAAAAAGCGAA+AGG	+	chr1_1:5839712-5839731	Msa0003330:CDS	40.0%
	AATGATTAGGTGAGAAGGGA+AGG	+	chr1_1:5840065-5840084	Msa0003330:intron	40.0%
!	AAACCTTTTCTGGACTACTG+AGG	-	chr1_1:5840107-5840126	None:intergenic	40.0%
	TGTTGAACTATATGCCGAGA+AGG	+	chr1_1:5840144-5840163	Msa0003330:CDS	40.0%
	TCTCTTCGTTACAAGCTTCT+CGG	+	chr1_1:5840205-5840224	Msa0003330:CDS	40.0%
!	TGTTATGGAAAGTGGTGCTA+AGG	+	chr1_1:5840270-5840289	Msa0003330:CDS	40.0%
!	GTTATGGAAAGTGGTGCTAA+GGG	+	chr1_1:5840271-5840290	Msa0003330:CDS	40.0%
	GGATGTGAGGTTATTGTTAG+TGG	+	chr1_1:5840292-5840311	Msa0003330:CDS	40.0%
	ATCCTTGAACTTCATGGACT+TGG	-	chr1_1:5840338-5840357	None:intergenic	40.0%
	AAGTCCATGAAGTTCAAGGA+TGG	+	chr1_1:5840337-5840356	Msa0003330:CDS	40.0%
	TAGACATGTTCTTCTCAGAC+AGG	+	chr1_1:5840411-5840430	Msa0003330:CDS	40.0%
!	GTAGGGTGTTCTTGGTATTA+AGG	+	chr1_1:5840521-5840540	Msa0003330:intron	40.0%
	AGGTGAAGATTATGCTTGAC+TGG	+	chr1_1:5840541-5840560	Msa0003330:CDS	40.0%
	GGTGAAGATTATGCTTGACT+GGG	+	chr1_1:5840542-5840561	Msa0003330:CDS	40.0%
	TTAGGACCTTGCTTTCCTTT+AGG	-	chr1_1:5840570-5840589	None:intergenic	40.0%
!	ATATCAGGTAGGGGAGTTTT+AGG	-	chr1_1:5840588-5840607	None:intergenic	40.0%
	TTTCTCAAACAACAGGGACT+GGG	-	chr1_1:5840692-5840711	None:intergenic	40.0%
!	TTTTCTCAAACAACAGGGAC+TGG	-	chr1_1:5840693-5840712	None:intergenic	40.0%
	TAAGGAACATAATACACGGG+AGG	-	chr1_1:5840893-5840912	None:intergenic	40.0%
	GAGAAATGGTTAGGGATGGA+TGG	-	chr1_1:5839598-5839617	None:intergenic	45.0%
	CTTGCTGAAGATGGCTATTC+CGG	+	chr1_1:5839889-5839908	Msa0003330:CDS	45.0%
!	CTATTCCGGTGTTGAGGTTA+GGG	+	chr1_1:5839903-5839922	Msa0003330:CDS	45.0%
	AGTAACCCTAACCTCAACAC+CGG	-	chr1_1:5839911-5839930	None:intergenic	45.0%
	ATGATGATCTCAGTGCGCAT+GGG	-	chr1_1:5839934-5839953	None:intergenic	45.0%
	CTACGAACCAAGAACAGCTT+GGG	-	chr1_1:5839971-5839990	None:intergenic	45.0%
	ACTACGAACCAAGAACAGCT+TGG	-	chr1_1:5839972-5839991	None:intergenic	45.0%
	TGACCTCAGTAGTCCAGAAA+AGG	+	chr1_1:5840101-5840120	Msa0003330:CDS	45.0%
	ATGCCGAGAAGGTTAACAAC+AGG	+	chr1_1:5840155-5840174	Msa0003330:CDS	45.0%
	TGCCGAGAAGGTTAACAACA+GGG	+	chr1_1:5840156-5840175	Msa0003330:CDS	45.0%
	TCCCCTGTTGTTAACCTTCT+CGG	-	chr1_1:5840161-5840180	None:intergenic	45.0%
	AAACCTCAACACACCGTAAC+AGG	-	chr1_1:5840251-5840270	None:intergenic	45.0%
!!	CGGTGTGTTGAGGTTTGTTA+TGG	+	chr1_1:5840255-5840274	Msa0003330:CDS	45.0%
	AGCCAAGTCCATGAAGTTCA+AGG	+	chr1_1:5840333-5840352	Msa0003330:CDS	45.0%
	GTAGCCATCCTTGAACTTCA+TGG	-	chr1_1:5840344-5840363	None:intergenic	45.0%
	GATGGCTACATGATCTCATC+TGG	+	chr1_1:5840355-5840374	Msa0003330:CDS	45.0%
	ATGCTTGACTGGGATCCTAA+AGG	+	chr1_1:5840552-5840571	Msa0003330:CDS	45.0%
	TGGGATCCTAAAGGAAAGCA+AGG	+	chr1_1:5840561-5840580	Msa0003330:CDS	45.0%
	TGTTACCATTCACACTCCCA+AGG	+	chr1_1:5840608-5840627	Msa0003330:CDS	45.0%
	TCATTTGCAACAACAGCAGC+AGG	-	chr1_1:5840654-5840673	None:intergenic	45.0%
	GAGAAATGGTTAGGGATGGA+TGG	-	chr1_1:5839598-5839617	None:intergenic	45.0%
	CTTGCTGAAGATGGCTATTC+CGG	+	chr1_1:5839889-5839908	Msa0003330:CDS	45.0%
!	CTATTCCGGTGTTGAGGTTA+GGG	+	chr1_1:5839903-5839922	Msa0003330:CDS	45.0%
	AGTAACCCTAACCTCAACAC+CGG	-	chr1_1:5839911-5839930	None:intergenic	45.0%
	ATGATGATCTCAGTGCGCAT+GGG	-	chr1_1:5839934-5839953	None:intergenic	45.0%
	CTACGAACCAAGAACAGCTT+GGG	-	chr1_1:5839971-5839990	None:intergenic	45.0%
	ACTACGAACCAAGAACAGCT+TGG	-	chr1_1:5839972-5839991	None:intergenic	45.0%
	TGACCTCAGTAGTCCAGAAA+AGG	+	chr1_1:5840101-5840120	Msa0003330:CDS	45.0%
	ATGCCGAGAAGGTTAACAAC+AGG	+	chr1_1:5840155-5840174	Msa0003330:CDS	45.0%
	TGCCGAGAAGGTTAACAACA+GGG	+	chr1_1:5840156-5840175	Msa0003330:CDS	45.0%
	TCCCCTGTTGTTAACCTTCT+CGG	-	chr1_1:5840161-5840180	None:intergenic	45.0%
	AAACCTCAACACACCGTAAC+AGG	-	chr1_1:5840251-5840270	None:intergenic	45.0%
!!	CGGTGTGTTGAGGTTTGTTA+TGG	+	chr1_1:5840255-5840274	Msa0003330:CDS	45.0%
	AGCCAAGTCCATGAAGTTCA+AGG	+	chr1_1:5840333-5840352	Msa0003330:CDS	45.0%
	GTAGCCATCCTTGAACTTCA+TGG	-	chr1_1:5840344-5840363	None:intergenic	45.0%
	GATGGCTACATGATCTCATC+TGG	+	chr1_1:5840355-5840374	Msa0003330:CDS	45.0%
	ATGCTTGACTGGGATCCTAA+AGG	+	chr1_1:5840552-5840571	Msa0003330:CDS	45.0%
	TGGGATCCTAAAGGAAAGCA+AGG	+	chr1_1:5840561-5840580	Msa0003330:CDS	45.0%
	TGTTACCATTCACACTCCCA+AGG	+	chr1_1:5840608-5840627	Msa0003330:CDS	45.0%
	TCATTTGCAACAACAGCAGC+AGG	-	chr1_1:5840654-5840673	None:intergenic	45.0%
!!	TTGCAGATTTAGCTTGGGGG+CGG	-	chr1_1:5839682-5839701	None:intergenic	50.0%
	TTGTTGCAGTTCGTCGCTGA+CGG	+	chr1_1:5839826-5839845	Msa0003330:intron	50.0%
!!	ACCAGAGAGCTTGCTGAAGA+TGG	+	chr1_1:5839880-5839899	Msa0003330:CDS	50.0%
!	AGATGGCTATTCCGGTGTTG+AGG	+	chr1_1:5839897-5839916	Msa0003330:CDS	50.0%
!	GCTATTCCGGTGTTGAGGTT+AGG	+	chr1_1:5839902-5839921	Msa0003330:CDS	50.0%
	GATGATGATCTCAGTGCGCA+TGG	-	chr1_1:5839935-5839954	None:intergenic	50.0%
	ACTCGTACCCAAGCTGTTCT+TGG	+	chr1_1:5839961-5839980	Msa0003330:CDS	50.0%
	GATTAGGTGAGAAGGGAAGG+AGG	+	chr1_1:5840068-5840087	Msa0003330:intron	50.0%
	GCCGAGAAGGTTAACAACAG+GGG	+	chr1_1:5840157-5840176	Msa0003330:CDS	50.0%
	CTTCGTTACAAGCTTCTCGG+AGG	+	chr1_1:5840208-5840227	Msa0003330:CDS	50.0%
!	AAGTGGTGCTAAGGGATGTG+AGG	+	chr1_1:5840279-5840298	Msa0003330:CDS	50.0%
	CTCATCTGGCCAACCTGTTA+AGG	+	chr1_1:5840369-5840388	Msa0003330:CDS	50.0%
	TACCATTCACACTCCCAAGG+AGG	+	chr1_1:5840611-5840630	Msa0003330:CDS	50.0%
	ACGTACTCTTCCTCCTCCTT+GGG	-	chr1_1:5840627-5840646	None:intergenic	50.0%
	AAACAACAGGGACTGGGACA+GGG	-	chr1_1:5840686-5840705	None:intergenic	50.0%
!!	TTGCAGATTTAGCTTGGGGG+CGG	-	chr1_1:5839682-5839701	None:intergenic	50.0%
	TTGTTGCAGTTCGTCGCTGA+CGG	+	chr1_1:5839826-5839845	Msa0003330:intron	50.0%
!!	ACCAGAGAGCTTGCTGAAGA+TGG	+	chr1_1:5839880-5839899	Msa0003330:CDS	50.0%
!	AGATGGCTATTCCGGTGTTG+AGG	+	chr1_1:5839897-5839916	Msa0003330:CDS	50.0%
!	GCTATTCCGGTGTTGAGGTT+AGG	+	chr1_1:5839902-5839921	Msa0003330:CDS	50.0%
	GATGATGATCTCAGTGCGCA+TGG	-	chr1_1:5839935-5839954	None:intergenic	50.0%
	ACTCGTACCCAAGCTGTTCT+TGG	+	chr1_1:5839961-5839980	Msa0003330:CDS	50.0%
	GATTAGGTGAGAAGGGAAGG+AGG	+	chr1_1:5840068-5840087	Msa0003330:intron	50.0%
	GCCGAGAAGGTTAACAACAG+GGG	+	chr1_1:5840157-5840176	Msa0003330:CDS	50.0%
	CTTCGTTACAAGCTTCTCGG+AGG	+	chr1_1:5840208-5840227	Msa0003330:CDS	50.0%
!	AAGTGGTGCTAAGGGATGTG+AGG	+	chr1_1:5840279-5840298	Msa0003330:CDS	50.0%
	CTCATCTGGCCAACCTGTTA+AGG	+	chr1_1:5840369-5840388	Msa0003330:CDS	50.0%
	TACCATTCACACTCCCAAGG+AGG	+	chr1_1:5840611-5840630	Msa0003330:CDS	50.0%
	ACGTACTCTTCCTCCTCCTT+GGG	-	chr1_1:5840627-5840646	None:intergenic	50.0%
	AAACAACAGGGACTGGGACA+GGG	-	chr1_1:5840686-5840705	None:intergenic	50.0%
	GCCATCTTCAGCAAGCTCTC+TGG	-	chr1_1:5839884-5839903	None:intergenic	55.0%
	GCTGTTCGCAGAGCCTGTTA+CGG	+	chr1_1:5840235-5840254	Msa0003330:CDS	55.0%
	GAGCCTGTTACGGTGTGTTG+AGG	+	chr1_1:5840245-5840264	Msa0003330:CDS	55.0%
!	CTCCTCCTTGGGAGTGTGAA+TGG	-	chr1_1:5840616-5840635	None:intergenic	55.0%
	CATTCACACTCCCAAGGAGG+AGG	+	chr1_1:5840614-5840633	Msa0003330:CDS	55.0%
	GACGTACTCTTCCTCCTCCT+TGG	-	chr1_1:5840628-5840647	None:intergenic	55.0%
!	AGGAGGAGGAAGAGTACGTC+AGG	+	chr1_1:5840628-5840647	Msa0003330:CDS	55.0%
	CAAACAACAGGGACTGGGAC+AGG	-	chr1_1:5840687-5840706	None:intergenic	55.0%
	GCCATCTTCAGCAAGCTCTC+TGG	-	chr1_1:5839884-5839903	None:intergenic	55.0%
	GCTGTTCGCAGAGCCTGTTA+CGG	+	chr1_1:5840235-5840254	Msa0003330:CDS	55.0%
	GAGCCTGTTACGGTGTGTTG+AGG	+	chr1_1:5840245-5840264	Msa0003330:CDS	55.0%
!	CTCCTCCTTGGGAGTGTGAA+TGG	-	chr1_1:5840616-5840635	None:intergenic	55.0%
	CATTCACACTCCCAAGGAGG+AGG	+	chr1_1:5840614-5840633	Msa0003330:CDS	55.0%
	GACGTACTCTTCCTCCTCCT+TGG	-	chr1_1:5840628-5840647	None:intergenic	55.0%
!	AGGAGGAGGAAGAGTACGTC+AGG	+	chr1_1:5840628-5840647	Msa0003330:CDS	55.0%
	CAAACAACAGGGACTGGGAC+AGG	-	chr1_1:5840687-5840706	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	5839578	5841036	5839578	ID=Msa0003330;Name=Msa0003330
chr1_1	mRNA	5839578	5841036	5839578	ID=Msa0003330-mRNA-1;Parent=Msa0003330;Name=Msa0003330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=126\|1\|1\|1\|1\|1\|4\|329\|239
chr1_1	exon	5839578	5839733	5839578	ID=Msa0003330-mRNA-1:exon:1757;Parent=Msa0003330-mRNA-1
chr1_1	exon	5839835	5839982	5839835	ID=Msa0003330-mRNA-1:exon:1758;Parent=Msa0003330-mRNA-1
chr1_1	exon	5840074	5840432	5840074	ID=Msa0003330-mRNA-1:exon:1759;Parent=Msa0003330-mRNA-1
chr1_1	exon	5840525	5841036	5840525	ID=Msa0003330-mRNA-1:exon:1760;Parent=Msa0003330-mRNA-1
chr1_1	five_prime_UTR	5839578	5839703	5839578	ID=Msa0003330-mRNA-1:five_prime_utr;Parent=Msa0003330-mRNA-1
chr1_1	CDS	5839704	5839733	5839704	ID=Msa0003330-mRNA-1:cds;Parent=Msa0003330-mRNA-1
chr1_1	CDS	5839835	5839982	5839835	ID=Msa0003330-mRNA-1:cds;Parent=Msa0003330-mRNA-1
chr1_1	CDS	5840074	5840432	5840074	ID=Msa0003330-mRNA-1:cds;Parent=Msa0003330-mRNA-1
chr1_1	CDS	5840525	5840707	5840525	ID=Msa0003330-mRNA-1:cds;Parent=Msa0003330-mRNA-1
chr1_1	three_prime_UTR	5840708	5841036	5840708	ID=Msa0003330-mRNA-1:three_prime_utr;Parent=Msa0003330-mRNA-1

Gene Sequence

>Msa0003330

ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACCAGAGAGCTTGCTGAAGATGGCTATTCCGGTGTTGAGGTTAGGGTTACTCCCATGCGCACTGAGATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATCAGAGAACTGACCTCAGTAGTCCAGAAAAGGTTTAAGTTTCCTGAGAACAGTGTTGAACTATATGCCGAGAAGGTTAACAACAGGGGACTTTGTGCAATTGCACAAGCTGAGTCTCTTCGTTACAAGCTTCTCGGAGGTCTTGCTGTTCGCAGAGCCTGTTACGGTGTGTTGAGGTTTGTTATGGAAAGTGGTGCTAAGGGATGTGAGGTTATTGTTAGTGGAAAATTGAGAGCACAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGCCAACCTGTTAAGGATTACATTGACTCTGCTGTTAGACATGTTCTTCTCAGACAGGGTGTTCTTGGTATTAAGGTGAAGATTATGCTTGACTGGGATCCTAAAGGAAAGCAAGGTCCTAAAACTCCCCTACCTGATATTGTTACCATTCACACTCCCAAGGAGGAGGAAGAGTACGTCAGGCCTGCTGCTGTTGTTGCAAATGATATTGAGGTCCCTGTCCCAGTCCCTGTTGTTTGA

Protein sequence

>Msa0003330

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYVRPAAVVANDIEVPVPVPVV*