AlfalfaGEDB | Msa0382290

M. sativa cultivar zhongmu-4 / Msa0382290

KEGG: K15397
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0080167
PFAM: PF08392.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382290	QEX52173.1	99.814	537	1	0	1	537	1	537	0.0	1113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382290	sp\|Q570B4\|KCS10_ARATH	74.773	551	118	3	3	536	4	550	0.0	870

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382290	A0A5J6NCI0	99.814	537	1	0	1	537	1	537	0.0	1113

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0382290	0.811247	7.703992e-51	-8.615850e-47
Msa0001460	Msa0382290	0.808927	2.434500e-50	-8.615850e-47
Msa0001540	Msa0382290	0.810142	1.335421e-50	-8.615850e-47
Msa0003470	Msa0382290	0.851443	8.848053e-61	-8.615850e-47
Msa0004350	Msa0382290	0.835647	1.485903e-56	-8.615850e-47
Msa0006580	Msa0382290	0.820124	8.096860e-53	-8.615850e-47
Msa0007160	Msa0382290	0.801942	7.095942e-49	-8.615850e-47
Msa0007450	Msa0382290	0.821020	5.039731e-53	-8.615850e-47
Msa0009210	Msa0382290	0.833091	6.508782e-56	-8.615850e-47
Msa0012460	Msa0382290	0.869144	3.859436e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382290	MtrunA17_Chr3g0136561	99.134	462	4	0	76	537	443	904	0.0	957
Msa0382290	MtrunA17_Chr1g0166191	58.964	502	194	4	35	536	23	512	0.0	630
Msa0382290	MtrunA17_Chr1g0188051	58.498	506	198	4	31	536	13	506	0.0	629
Msa0382290	MtrunA17_Chr4g0035081	58.218	505	198	5	32	536	11	502	0.0	629
Msa0382290	MtrunA17_Chr4g0063011	56.287	501	207	4	36	536	6	494	0.0	615
Msa0382290	MtrunA17_Chr7g0276251	55.664	512	210	7	32	536	27	528	0.0	600
Msa0382290	MtrunA17_Chr1g0209881	55.110	499	211	5	38	536	5	490	0.0	570
Msa0382290	MtrunA17_Chr2g0282281	53.143	525	222	5	3	527	2	502	0.0	570
Msa0382290	MtrunA17_Chr5g0423521	52.894	501	219	5	38	536	5	490	0.0	553
Msa0382290	MtrunA17_Chr2g0306781	61.478	379	136	2	158	536	31	399	2.66e-174	498

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0382290	AT2G26250.1	74.773	551	118	3	3	536	4	550	870
Msa0382290	AT1G19440.1	59.684	506	191	5	32	537	23	515	643
Msa0382290	AT2G26640.1	56.886	501	204	4	36	536	15	503	623
Msa0382290	AT2G16280.1	57.256	503	202	5	35	537	22	511	612
Msa0382290	AT1G04220.1	57.228	505	199	5	36	534	20	513	600
Msa0382290	AT1G01120.1	55.010	509	215	5	32	536	28	526	595
Msa0382290	AT1G68530.1	55.734	497	207	5	38	534	6	489	586
Msa0382290	AT4G34510.1	55.102	490	201	5	49	537	15	486	556
Msa0382290	AT1G25450.1	53.320	497	219	5	38	534	1	484	556
Msa0382290	AT5G43760.1	56.024	498	203	6	44	536	34	520	554

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Find 123 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACATCACAACACT+AGG	0.592072	3_1:+84746339	Msa0382290:CDS
AAAATAAGCTGTTCTGAAAA+GGG	0.455046	3_1:-84746375	None:intergenic
AAAGACTTAATTGAAATTGG+TGG	0.514408	3_1:+84746306	Msa0382290:CDS
AAAGAGTACTGAGAAAACAA+AGG	0.671840	3_1:-84747002	None:intergenic
AAATCAGGAAAATTTGATGA+AGG	0.547989	3_1:+84744774	Msa0382290:CDS
AACACAGCAACAATGAAAGA+AGG	0.567448	3_1:+84744885	Msa0382290:CDS
AACCCAATTTCACATACTTA+AGG	0.365618	3_1:-84743546	None:intergenic
AACCGTGGGATTGAATCATC+GGG	0.521194	3_1:+84743451	Msa0382290:CDS
AACCTTAAGTATGTGAAATT+GGG	0.472847	3_1:+84743544	Msa0382290:CDS
AACCTTCTTCTAGGAACCCT+TGG	0.447884	3_1:+84746763	Msa0382290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACAGATTGAAGAAAATC+CGG	-	chr3_1:84743526-84743545	None:intergenic	30.0%
GAACCTTAAGTATGTGAAAT+TGG	+	chr3_1:84743543-84743562	Msa0382290:CDS	30.0%
AACCCAATTTCACATACTTA+AGG	-	chr3_1:84743549-84743568	None:intergenic	30.0%
TACCATTATCTGATAAACCA+TGG	+	chr3_1:84743568-84743587	Msa0382290:CDS	30.0%
TAGTGAACAAATAAACACCA+TGG	-	chr3_1:84743588-84743607	None:intergenic	30.0%
CTAAACACAACAAGTAGAAT+TGG	-	chr3_1:84743613-84743632	None:intergenic	30.0%
AAATCTAAGTGTAGTGCTAT+AGG	+	chr3_1:84744107-84744126	Msa0382290:intron	30.0%
ATGTCTAGAAAAACTTGTGT+TGG	+	chr3_1:84744681-84744700	Msa0382290:intron	30.0%
ATAGTAATGTCATCAGGAAT+AGG	+	chr3_1:84744819-84744838	Msa0382290:CDS	30.0%
GATATACTTCAATCTAATCC+TGG	+	chr3_1:84745140-84745159	Msa0382290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	84743228	84747134	84743228	ID=Msa0382290;Name=Msa0382290
chr3_1	mRNA	84743228	84747134	84743228	ID=Msa0382290-mRNA-1;Parent=Msa0382290;Name=Msa0382290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=181\|1\|1\|1\|1\|1\|3\|310\|537
chr3_1	exon	84743228	84743822	84743228	ID=Msa0382290-mRNA-1:exon:22076;Parent=Msa0382290-mRNA-1
chr3_1	exon	84744741	84745369	84744741	ID=Msa0382290-mRNA-1:exon:22077;Parent=Msa0382290-mRNA-1
chr3_1	exon	84746254	84747134	84746254	ID=Msa0382290-mRNA-1:exon:22078;Parent=Msa0382290-mRNA-1
chr3_1	five_prime_UTR	84743228	84743408	84743228	ID=Msa0382290-mRNA-1:five_prime_utr;Parent=Msa0382290-mRNA-1
chr3_1	CDS	84743409	84743822	84743409	ID=Msa0382290-mRNA-1:cds;Parent=Msa0382290-mRNA-1
chr3_1	CDS	84744741	84745369	84744741	ID=Msa0382290-mRNA-1:cds;Parent=Msa0382290-mRNA-1
chr3_1	CDS	84746254	84746824	84746254	ID=Msa0382290-mRNA-1:cds;Parent=Msa0382290-mRNA-1
chr3_1	three_prime_UTR	84746825	84747134	84746825	ID=Msa0382290-mRNA-1:three_prime_utr;Parent=Msa0382290-mRNA-1

Gene Sequence

>Msa0382290

ATGGCTACTAACGAAGGTGACATGTTCTCAGCAGAGATTGTGAACCGTGGGATTGAATCATCGGGTCCGAATGCCGGTTCATTGACGTTCTCCGTTCGTGTTCGGAGACGGTTACCGGATTTTCTTCAATCTGTGAACCTTAAGTATGTGAAATTGGGTTACCATTATCTGATAAACCATGGTGTTTATTTGTTCACTATACCAATTCTACTTGTTGTGTTTAGTGCTGAGGTTGGTAGTCTTAGCAAAGAAGATCTTTGGAAGAAGATTTGGGAAGATGCAACTTATGATCTTGCATCTGTTCTCTCTTCTCTTGCTGTCTTTGTTTTCACTTTCACTCTTTACTTCATGTCAAGGCCACGTCCTATTTATCTCATTGATTTTGCATGCTATCAACCTGATGATGAACTCAAGGTATCTAGGGAGCAATTGATAGAGCTAGCAAGAAAATCAGGAAAATTTGATGAAGGAAGTCTAGAATTCCAGAAGAGGATAGTAATGTCATCAGGAATAGGTGATGAAACATACATTCCAAGATCAGTGATAGCATCAAGTGAAAACACAGCAACAATGAAAGAAGGTAGAGCTGAGGCATCAATGGTTATGTTTGGAGCACTTGATGAACTCTTTGAAAAAACAGGAATTAGACCAAAAGATGTTGGTGTTCTTGTAGTAAATTGTAGCATATTCAACCCAACACCATCATTGTCAGCCATGATTATAAATCATTATAAGATGAGGGGAAATATTTTGAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGAATTATTTCTGTTGATTTGGCTAGGGATATACTTCAATCTAATCCTGGTAACTATGCTGTTGTTGTGAGTACTGAAATGGTTGGATTTAATTGGTATCAAGGAAAAGAAAGATCAATGCTTATTCCAAATTGTTTCTTTCGTATGGGTTGTTCTGCTGTTTTGCTCTCTAACCGTCGTCGTGATTTTAGCCGCGCGAAATATCGTCTTGAACACATTGTTCGCACACATAAAGGTGCTGATGATCGTAGTTTCAGGTGTGTGTACCAAGAGGAAGACGATCAGAAATTCAAGGGAATAAAGATAAGCAAAGACTTAATTGAAATTGGTGGTGAAGCTCTCAAAACAAACATCACAACACTAGGACCATTGGTCCTACCCTTTTCAGAACAGCTTATTTTCTTTGCTACATTAGTGTGGAGGAACTTCTTTGGTGGTGGAAAATCTGATAAAAATTCACCATCATCAAACAAGCCATACATTCCTAACTACAAACTAGCTTTTGAGCATTTTTGTGTGCATGCTGCTAGCAAAACCATTCTTGATGAGCTTCAAAAGAATCTTGAATTGAGTGACAAGAACATGGAAGCCTCTAGAATGACGCTGCACCGATTCGGCAACACTTCTAGTAGCAGCATTTGGTATGAACTTGCTTATATGGAAGCTAAGGAAAAAGTTAAAAGAGGAGACCGTGTTTGGCAACTCGCTTTTGGTTCTGGTTTTAAGTGTAACAGTGCTGTTTGGCGTTCTATGCGTCGTGTCACAAAACCTTCTTCTAGGAACCCTTGGCTTGACTGCATTGATGCATATCCTGCTTCTCTCAATTAA

Protein sequence

>Msa0382290

MATNEGDMFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGVYLFTIPILLVVFSAEVGSLSKEDLWKKIWEDATYDLASVLSSLAVFVFTFTLYFMSRPRPIYLIDFACYQPDDELKVSREQLIELARKSGKFDEGSLEFQKRIVMSSGIGDETYIPRSVIASSENTATMKEGRAEASMVMFGALDELFEKTGIRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIISVDLARDILQSNPGNYAVVVSTEMVGFNWYQGKERSMLIPNCFFRMGCSAVLLSNRRRDFSRAKYRLEHIVRTHKGADDRSFRCVYQEEDDQKFKGIKISKDLIEIGGEALKTNITTLGPLVLPFSEQLIFFATLVWRNFFGGGKSDKNSPSSNKPYIPNYKLAFEHFCVHAASKTILDELQKNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKEKVKRGDRVWQLAFGSGFKCNSAVWRSMRRVTKPSSRNPWLDCIDAYPASLN*