AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0774090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774090 MtrunA17_Chr5g0428201 98.708 542 7 0 1 542 1 542 0.0 1103
Msa0774090 MtrunA17_Chr3g0141051 80.148 539 96 4 1 539 1 528 0.0 883
Msa0774090 MtrunA17_Chr4g0049411 65.878 507 163 4 36 539 27 526 0.0 654
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0774090 AT1G58290.1 82.189 466 80 2 75 540 79 541 0.0 787
Msa0774090 AT1G09940.1 71.429 546 134 7 1 540 1 530 0.0 768
Msa0774090 AT2G31250.1 64.516 465 151 6 80 540 70 524 0.0 583

Find 124 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATATCCTTACCCTTAA+AGG 0.099622 5_2:-49689319 Msa0774090:three_prime_UTR
GATTCTTTCTCAAGCCTTTA+AGG 0.101786 5_2:+49689305 None:intergenic
TGAGAAATGTTTAGGTAAAA+TGG 0.148078 5_2:-49689631 Msa0774090:CDS
TTCCAACCATTAAGAAATTA+AGG 0.165771 5_2:-49689686 Msa0774090:CDS
AAGAAGAAGAACAACATTTA+AGG 0.190377 5_2:+49691863 None:intergenic
ACGCAATCACCGTCGGTAAA+AGG 0.192964 5_2:-49690304 Msa0774090:CDS
ATAAGCCCTTAATTTCTTAA+TGG 0.214661 5_2:+49689680 None:intergenic
TGAAACTGAGGTTTCTGTTT+TGG 0.219895 5_2:-49689439 Msa0774090:CDS
CAGCTTCTTCAATATGATTC+AGG 0.228296 5_2:+49690918 None:intergenic
GGGCTTATGCTGAAAGATTA+AGG 0.231515 5_2:-49689665 Msa0774090:CDS
TAGTTTCTATGGTGCTAAAT+TGG 0.244077 5_2:-49691896 Msa0774090:CDS
AGACAATAATATTAGTAATA+AGG 0.278668 5_2:+49691949 None:intergenic
TAAGGCTCTATTTACGAGTT+TGG 0.290786 5_2:+49689157 None:intergenic
GCTGTTTCAACTAGTTTCTA+TGG 0.301919 5_2:-49691907 Msa0774090:CDS
GCAGAACTTGAGAAATGTTT+AGG 0.303247 5_2:-49689639 Msa0774090:CDS
GCTCTAGGCCATTCTGCTTC+TGG 0.309364 5_2:+49690959 None:intergenic
AGGAGCAGCATTGTCGTTAT+AGG 0.317194 5_2:-49691031 Msa0774090:CDS
TCCTTTAGCAAGCGAAGAAA+TGG 0.328100 5_2:-49689922 Msa0774090:CDS
TGTCATTGGAGCTGGTAAAA+TGG 0.333745 5_2:-49690168 Msa0774090:CDS
TGAAAGAGGCACACACATTA+AGG 0.342332 5_2:+49689139 None:intergenic
AAAGCTGGACAAGGAGTTAA+TGG 0.345454 5_2:-49690359 Msa0774090:CDS
TCCAACCATTAAGAAATTAA+GGG 0.367076 5_2:-49689685 Msa0774090:CDS
ATATATCTCCATTCGGTTGC+AGG 0.368382 5_2:+49690883 None:intergenic
ATTCTTTCTCAAGCCTTTAA+GGG 0.368639 5_2:+49689306 None:intergenic
TCTTAGCCTATCCTCTTTGT+TGG 0.373400 5_2:+49689785 None:intergenic
GTCATTGGAGCTGGTAAAAT+GGG 0.374632 5_2:-49690167 Msa0774090:CDS
GAGAAATGTTTAGGTAAAAT+GGG 0.376514 5_2:-49689630 Msa0774090:CDS
AGTGATCATCGGCGAAGAAT+CGG 0.380975 5_2:-49689745 Msa0774090:CDS
CAACATCATTTATTTCTTCA+CGG 0.384102 5_2:+49690060 None:intergenic
CGATGATCTTGAGTCTGTTA+AGG 0.386630 5_2:-49689844 Msa0774090:CDS
GGTCTTGATTCTCTTGTAAT+GGG 0.391946 5_2:-49690419 Msa0774090:CDS
GACCTGCTGATACTTCAAAA+AGG 0.396196 5_2:+49690438 None:intergenic
GGCTTATGCTGAAAGATTAA+GGG 0.398014 5_2:-49689664 Msa0774090:CDS
GCCCTTAATTTCTTAATGGT+TGG 0.403046 5_2:+49689684 None:intergenic
GGACAAGGAGTTAATGGCTT+TGG 0.404785 5_2:-49690353 Msa0774090:CDS
AGGTCTTGATTCTCTTGTAA+TGG 0.410658 5_2:-49690420 Msa0774090:CDS
TTCTCAAGCCTTTAAGGGTA+AGG 0.416845 5_2:+49689311 None:intergenic
GATTTCTGCGACTCTCCCTT+CGG 0.417908 5_2:+49690082 None:intergenic
ATCAAACATTTGGTTGCAAA+AGG 0.420709 5_2:-49690134 Msa0774090:CDS
GAAGCTTGTGATCAAACATT+TGG 0.426546 5_2:-49690144 Msa0774090:CDS
TCAGAAATGCTCGAATGTAT+TGG 0.429087 5_2:-49690017 Msa0774090:CDS
GTGATCATCGGCGAAGAATC+GGG 0.429361 5_2:-49689744 Msa0774090:CDS
ACACATGAACCTACGTTTCT+CGG 0.431304 5_2:+49689867 None:intergenic
GCTAAAACTATGTTTGTGTT+TGG 0.432621 5_2:+49691993 None:intergenic
AGTGTAATAATCAATGAAAA+TGG 0.434534 5_2:+49689362 None:intergenic
GGAGCAGCATTGTCGTTATA+GGG 0.438522 5_2:-49691030 Msa0774090:CDS
CCCATTTCTTCGCTTGCTAA+AGG 0.439472 5_2:+49689921 None:intergenic
GTGTATATTGTACAAAATAG+AGG 0.440797 5_2:-49689191 Msa0774090:three_prime_UTR
CGCAATCACCGTCGGTAAAA+GGG 0.440824 5_2:-49690303 Msa0774090:CDS
TTTCCATGTGAGGCTTGATC+AGG 0.445509 5_2:+49690203 None:intergenic
TTACTAATTCCGATTGAAAG+AGG 0.450419 5_2:+49689125 None:intergenic
ACATTCGAGCATTTCTGAAA+GGG 0.451933 5_2:+49690022 None:intergenic
TATTCACAATCCCCTTACTA+AGG 0.456577 5_2:+49689568 None:intergenic
AATCGGGACAATTTGAAGCT+TGG 0.456577 5_2:-49689728 Msa0774090:CDS
AGGCCATTCTGCTTCTGGTA+TGG 0.459415 5_2:+49690964 None:intergenic
AGGTTGGTATTGTTGTTACT+TGG 0.459571 5_2:+49691969 None:intergenic
ATGTGTGTGCCTCTTTCAAT+CGG 0.465895 5_2:-49689134 Msa0774090:three_prime_UTR
AGCTGTGGATGACCTTAGTA+AGG 0.471397 5_2:-49689580 Msa0774090:CDS
AATTTGTTCAACACAATTGT+GGG 0.472232 5_2:-49689103 Msa0774090:three_prime_UTR
GGAGCAGAAGATTAGAGCTA+AGG 0.475137 5_2:-49689418 Msa0774090:CDS
CAATGTTGATGATCTTAAAG+AGG 0.478016 5_2:-49689817 Msa0774090:CDS
TAAATGAGTAGTAACATAAG+AGG 0.481033 5_2:+49691828 None:intergenic
AACTGCACCAGCTGCAATGT+TGG 0.483484 5_2:+49690268 None:intergenic
GGCTCTATTTACGAGTTTGG+AGG 0.485071 5_2:+49689160 None:intergenic
GTCAAACAAGTTGTGAAAGC+TGG 0.487619 5_2:-49690374 Msa0774090:CDS
ATTGTGAATAAAATGCTTCA+TGG 0.487727 5_2:-49689555 Msa0774090:CDS
AAATTTGTTCAACACAATTG+TGG 0.488188 5_2:-49689104 Msa0774090:three_prime_UTR
AATAATATTAGTAATAAGGT+TGG 0.502115 5_2:+49691953 None:intergenic
AATGCAAGAATGCTTGTCAT+TGG 0.508230 5_2:-49690182 Msa0774090:CDS
CCTTTAGCAAGCGAAGAAAT+GGG 0.509769 5_2:-49689921 Msa0774090:CDS
CAAAGCTCACCAATGGCTCT+AGG 0.509965 5_2:+49690944 None:intergenic
CTGCAATGTTGGTCTCAGTT+CGG 0.511731 5_2:+49690279 None:intergenic
TACTTTGAAAGCTCTGATGC+AGG 0.514617 5_2:+49690497 None:intergenic
GCAGAATGGCCTAGAGCCAT+TGG 0.516082 5_2:-49690953 Msa0774090:CDS
GATTCTCTTGTAATGGGAGA+AGG 0.520460 5_2:-49690413 Msa0774090:CDS
AAGAGCTTTGTTCAAAGCAG+AGG 0.528512 5_2:-49691784 Msa0774090:CDS
TCACATCTCAAATGTTGCAT+TGG 0.531540 5_2:+49689531 None:intergenic
CGACAACATATATCTCCATT+CGG 0.533183 5_2:+49690876 None:intergenic
TGGTGCAGTTTCTGTTAGCT+CGG 0.542119 5_2:-49690255 Msa0774090:CDS
CATTCTTGCATTTCCATGTG+AGG 0.544143 5_2:+49690193 None:intergenic
CAACTTGTTTGACTTGTGCA+AGG 0.546113 5_2:+49690384 None:intergenic
GCAGAAGATTAGAGCTAAGG+TGG 0.550559 5_2:-49689415 Msa0774090:CDS
TACATTCGAGCATTTCTGAA+AGG 0.551311 5_2:+49690021 None:intergenic
ATGCAACATTTGAGATGTGA+TGG 0.556625 5_2:-49689528 Msa0774090:CDS
CATTCGAGCATTTCTGAAAG+GGG 0.557226 5_2:+49690023 None:intergenic
TCAAACATTTGGTTGCAAAA+GGG 0.561106 5_2:-49690133 Msa0774090:CDS
GGATAGGCTAAGAAAAGCAA+TGG 0.563807 5_2:-49689775 Msa0774090:CDS
TGATGATCTTAAAGAGGTTG+TGG 0.565478 5_2:-49689811 Msa0774090:CDS
ACTGAGACCAACATTGCAGC+TGG 0.577726 5_2:-49690275 Msa0774090:CDS
TGTACAAAATAGAGGAGTTG+TGG 0.577839 5_2:-49689183 Msa0774090:three_prime_UTR
CAAGTTGTGAAAGCTGGACA+AGG 0.578482 5_2:-49690368 Msa0774090:CDS
AATGTTTAGTCTTGAAACTG+AGG 0.579905 5_2:-49689451 Msa0774090:CDS
TTGCCATACCAGAAGCAGAA+TGG 0.581580 5_2:-49690967 Msa0774090:CDS
GAACAACATTTAAGGAACAA+AGG 0.591907 5_2:+49691871 None:intergenic
GTAGTTGTTAATCGAACCGA+AGG 0.592291 5_2:-49690098 Msa0774090:CDS
CAACAGGATATACAAAGGAA+AGG 0.593342 5_2:-49691051 Msa0774090:intron
AGAATGCTTGTCATTGGAGC+TGG 0.595232 5_2:-49690176 Msa0774090:CDS
TTGATCAGGTAACTTCATCA+AGG 0.596661 5_2:+49690217 None:intergenic
TCTGAGTACCTGCAACCGAA+TGG 0.596830 5_2:-49690891 Msa0774090:CDS
TGGCTGCCAACAAAGAGGAT+AGG 0.597993 5_2:-49689791 Msa0774090:CDS
TTACCTGATCAAGCCTCACA+TGG 0.600415 5_2:-49690206 Msa0774090:CDS
GATGTGATGGGAGTGATAGT+AGG 0.608822 5_2:-49689515 Msa0774090:CDS
GCTGTGGATGACCTTAGTAA+GGG 0.609420 5_2:-49689579 Msa0774090:CDS
TTCAAGCACGCAATCACCGT+CGG 0.609589 5_2:-49690311 Msa0774090:CDS
ATGGAAGCACAAGTGATCAT+CGG 0.609797 5_2:-49689756 Msa0774090:CDS
GTGTTAAAGAAGTCACTGAA+TGG 0.611528 5_2:-49690835 Msa0774090:CDS
GTGTCATATTAATCTTACTG+TGG 0.617221 5_2:+49689384 None:intergenic
CAGGTTACAAAGCTCACCAA+TGG 0.631732 5_2:+49690937 None:intergenic
CTGTGGATGACCTTAGTAAG+GGG 0.631866 5_2:-49689578 Msa0774090:CDS
ATTTCTGTTCCGAGAAACGT+AGG 0.641352 5_2:-49689876 Msa0774090:CDS
ACAGATTTAGCATTATCACT+AGG 0.641571 5_2:+49691718 None:intergenic
CAGTGACTTCTTTAACACCA+CGG 0.643134 5_2:+49690840 None:intergenic
TCTAAGTACACTAATTACAA+TGG 0.646392 5_2:-49691929 Msa0774090:exon
GAACAGAAATATCTACGAAG+AGG 0.658579 5_2:+49689889 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.660035 5_2:-49689796 Msa0774090:CDS
AAATGATGTGGCAAAAGATG+TGG 0.662446 5_2:+49692039 None:intergenic
ACTTTCAACAGGATATACAA+AGG 0.666271 5_2:-49691056 Msa0774090:intron
TGCAACATTTGAGATGTGAT+GGG 0.668284 5_2:-49689527 Msa0774090:CDS
AAATGAATAATGAAATGATG+TGG 0.671437 5_2:+49692027 None:intergenic
TCATTGGAGCTGGTAAAATG+GGG 0.672113 5_2:-49690166 Msa0774090:CDS
GGCTTTGGCAGAAACATCAG+TGG 0.677835 5_2:-49690338 Msa0774090:CDS
GTCGCACTTTCTCAGCACCG+TGG 0.705085 5_2:-49690857 Msa0774090:CDS
TTAGCAAGCGAAGAAATGGG+AGG 0.728387 5_2:-49689918 Msa0774090:CDS
TAGTTGTTAATCGAACCGAA+GGG 0.773384 5_2:-49690097 Msa0774090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAATAATTTGGT+TGG - chr5_2:49689571-49689590 Msa0774090:CDS 10.0%
!! ACTTTATGATTAATTAATTA+CGG + chr5_2:49689661-49689680 None:intergenic 10.0%
!! AATAATATTAGTAATAAGGT+TGG + chr5_2:49689185-49689204 None:intergenic 15.0%
!! AGACAATAATATTAGTAATA+AGG + chr5_2:49689189-49689208 None:intergenic 15.0%
!! AGAATATAATTTCTCTATAT+GGG - chr5_2:49689896-49689915 Msa0774090:CDS 15.0%
!! TAAATATCTACATATATGTT+TGG - chr5_2:49690373-49690392 Msa0774090:CDS 15.0%
!! AAATGAATAATGAAATGATG+TGG + chr5_2:49689111-49689130 None:intergenic 20.0%
!!! ACTACTCATTTATCATTTTT+TGG - chr5_2:49689318-49689337 Msa0774090:three_prime_UTR 20.0%
!!! GTTTTTTAGTTGATAATGAA+TGG - chr5_2:49689495-49689514 Msa0774090:CDS 20.0%
!! TAATGAATGGTTCAATTATA+TGG - chr5_2:49689508-49689527 Msa0774090:CDS 20.0%
!! AATTATATGGTTAAGATTAG+TGG - chr5_2:49689521-49689540 Msa0774090:CDS 20.0%
!! GTTTAATTATGTTTAGTAGA+TGG - chr5_2:49689614-49689633 Msa0774090:CDS 20.0%
!! GATGGTTAATGAATATAATA+AGG - chr5_2:49689632-49689651 Msa0774090:CDS 20.0%
!! AATTAAACACATGAAAGTTA+TGG - chr5_2:49689775-49689794 Msa0774090:CDS 20.0%
!! GAGAATATAATTTCTCTATA+TGG - chr5_2:49689895-49689914 Msa0774090:CDS 20.0%
!! CTTTATTATGTTATATTCCT+CGG - chr5_2:49689991-49690010 Msa0774090:CDS 20.0%
!!! ACATTTTCTTTCAAAATCAA+AGG + chr5_2:49691184-49691203 None:intergenic 20.0%
!!! GATTTTGAAAGAAAATGTTA+AGG - chr5_2:49691186-49691205 Msa0774090:intron 20.0%
!! AGTGTAATAATCAATGAAAA+TGG + chr5_2:49691776-49691795 None:intergenic 20.0%
! TCTAAGTACACTAATTACAA+TGG - chr5_2:49689206-49689225 Msa0774090:three_prime_UTR 25.0%
! AAGAAGAAGAACAACATTTA+AGG + chr5_2:49689275-49689294 None:intergenic 25.0%
! TAAATGAGTAGTAACATAAG+AGG + chr5_2:49689310-49689329 None:intergenic 25.0%
! CAACTAAAAAACATTCAAAG+AGG + chr5_2:49689487-49689506 None:intergenic 25.0%
! CAATTTCTATGGATATAACA+AGG + chr5_2:49689859-49689878 None:intergenic 25.0%
! GAATTTGACAACAATTTCTA+TGG + chr5_2:49689870-49689889 None:intergenic 25.0%
!! TTATGAAATTGACTTTCAAC+AGG - chr5_2:49690068-49690087 Msa0774090:CDS 25.0%
! CAAGAATATAACATAAGTTC+AGG + chr5_2:49690598-49690617 None:intergenic 25.0%
!! CAACATCATTTATTTCTTCA+CGG + chr5_2:49691078-49691097 None:intergenic 25.0%
! TTCCAACCATTAAGAAATTA+AGG - chr5_2:49691449-49691468 Msa0774090:intron 25.0%
! TCCAACCATTAAGAAATTAA+GGG - chr5_2:49691450-49691469 Msa0774090:intron 25.0%
! ATAAGCCCTTAATTTCTTAA+TGG + chr5_2:49691458-49691477 None:intergenic 25.0%
! TGAGAAATGTTTAGGTAAAA+TGG - chr5_2:49691504-49691523 Msa0774090:intron 25.0%
! GAGAAATGTTTAGGTAAAAT+GGG - chr5_2:49691505-49691524 Msa0774090:intron 25.0%
! ATTGTGAATAAAATGCTTCA+TGG - chr5_2:49691580-49691599 Msa0774090:intron 25.0%
! ATAACCAGAAAAACAAACAA+AGG + chr5_2:49691893-49691912 None:intergenic 25.0%
! GTGTATATTGTACAAAATAG+AGG - chr5_2:49691944-49691963 Msa0774090:five_prime_UTR 25.0%
!! AAATTTGTTCAACACAATTG+TGG - chr5_2:49692031-49692050 Msa0774090:five_prime_UTR 25.0%
!! AATTTGTTCAACACAATTGT+GGG - chr5_2:49692032-49692051 Msa0774090:five_prime_UTR 25.0%
GCTAAAACTATGTTTGTGTT+TGG + chr5_2:49689145-49689164 None:intergenic 30.0%
! TAGTTTCTATGGTGCTAAAT+TGG - chr5_2:49689239-49689258 Msa0774090:three_prime_UTR 30.0%
GAACAACATTTAAGGAACAA+AGG + chr5_2:49689267-49689286 None:intergenic 30.0%
ACAGATTTAGCATTATCACT+AGG + chr5_2:49689420-49689439 None:intergenic 30.0%
TGTTCAAAATCGTTGCTAAT+TGG + chr5_2:49689688-49689707 None:intergenic 30.0%
! CATCAATAACCAAGATTTTC+AGG - chr5_2:49689706-49689725 Msa0774090:CDS 30.0%
AAACGTAAACCTGAAAATCT+TGG + chr5_2:49689718-49689737 None:intergenic 30.0%
TAATTTCTCTATATGGGACA+TGG - chr5_2:49689902-49689921 Msa0774090:CDS 30.0%
AATTTCTCTATATGGGACAT+GGG - chr5_2:49689903-49689922 Msa0774090:CDS 30.0%
ACTTTCAACAGGATATACAA+AGG - chr5_2:49690079-49690098 Msa0774090:CDS 30.0%
AGAAAAAAGTGAACCTACAT+TGG + chr5_2:49690330-49690349 None:intergenic 30.0%
ATCAAACATTTGGTTGCAAA+AGG - chr5_2:49691001-49691020 Msa0774090:CDS 30.0%
TCAAACATTTGGTTGCAAAA+GGG - chr5_2:49691002-49691021 Msa0774090:CDS 30.0%
!! CAATGTTGATGATCTTAAAG+AGG - chr5_2:49691318-49691337 Msa0774090:intron 30.0%
!! AATGTTTAGTCTTGAAACTG+AGG - chr5_2:49691684-49691703 Msa0774090:CDS 30.0%
GTGTCATATTAATCTTACTG+TGG + chr5_2:49691754-49691773 None:intergenic 30.0%
ATGAATATCCTTACCCTTAA+AGG - chr5_2:49691816-49691835 Msa0774090:CDS 30.0%
ATTCTTTCTCAAGCCTTTAA+GGG + chr5_2:49691832-49691851 None:intergenic 30.0%
TTACTAATTCCGATTGAAAG+AGG + chr5_2:49692013-49692032 None:intergenic 30.0%
AAATGATGTGGCAAAAGATG+TGG + chr5_2:49689099-49689118 None:intergenic 35.0%
!!! GTTTGTGTTTGGTTTTTGTG+TGG + chr5_2:49689134-49689153 None:intergenic 35.0%
!! AGGTTGGTATTGTTGTTACT+TGG + chr5_2:49689169-49689188 None:intergenic 35.0%
! GCTGTTTCAACTAGTTTCTA+TGG - chr5_2:49689228-49689247 Msa0774090:three_prime_UTR 35.0%
TTACGTTTGATCGCAAATTG+TGG - chr5_2:49689730-49689749 Msa0774090:CDS 35.0%
TGATCGCAAATTGTGGTTAA+TGG - chr5_2:49689737-49689756 Msa0774090:CDS 35.0%
ATCGTGATTAATTACGTTCG+TGG - chr5_2:49689813-49689832 Msa0774090:CDS 35.0%
TGATTAATTACGTTCGTGGA+TGG - chr5_2:49689817-49689836 Msa0774090:CDS 35.0%
CAACAGGATATACAAAGGAA+AGG - chr5_2:49690084-49690103 Msa0774090:CDS 35.0%
CAGCTTCTTCAATATGATTC+AGG + chr5_2:49690220-49690239 None:intergenic 35.0%
CGACAACATATATCTCCATT+CGG + chr5_2:49690262-49690281 None:intergenic 35.0%
GTGTTAAAGAAGTCACTGAA+TGG - chr5_2:49690300-49690319 Msa0774090:CDS 35.0%
! TGATCAGTTACGAACTTGTT+TGG + chr5_2:49690572-49690591 None:intergenic 35.0%
!!! ATTCTTGTTTTGCAGACAAG+TGG - chr5_2:49690611-49690630 Msa0774090:intron 35.0%
AGGTCTTGATTCTCTTGTAA+TGG - chr5_2:49690715-49690734 Msa0774090:intron 35.0%
GGTCTTGATTCTCTTGTAAT+GGG - chr5_2:49690716-49690735 Msa0774090:intron 35.0%
TTGATCAGGTAACTTCATCA+AGG + chr5_2:49690921-49690940 None:intergenic 35.0%
AATGCAAGAATGCTTGTCAT+TGG - chr5_2:49690953-49690972 Msa0774090:CDS 35.0%
GAAGCTTGTGATCAAACATT+TGG - chr5_2:49690991-49691010 Msa0774090:CDS 35.0%
! TGCAAAAGGGTGTAAAAAGA+TGG - chr5_2:49691015-49691034 Msa0774090:CDS 35.0%
TAGTTGTTAATCGAACCGAA+GGG - chr5_2:49691038-49691057 Msa0774090:CDS 35.0%
! ACATTCGAGCATTTCTGAAA+GGG + chr5_2:49691116-49691135 None:intergenic 35.0%
TACATTCGAGCATTTCTGAA+AGG + chr5_2:49691117-49691136 None:intergenic 35.0%
TCAGAAATGCTCGAATGTAT+TGG - chr5_2:49691118-49691137 Msa0774090:intron 35.0%
GAACAGAAATATCTACGAAG+AGG + chr5_2:49691249-49691268 None:intergenic 35.0%
TGATGATCTTAAAGAGGTTG+TGG - chr5_2:49691324-49691343 Msa0774090:intron 35.0%
GCCCTTAATTTCTTAATGGT+TGG + chr5_2:49691454-49691473 None:intergenic 35.0%
GGCTTATGCTGAAAGATTAA+GGG - chr5_2:49691471-49691490 Msa0774090:intron 35.0%
GCAGAACTTGAGAAATGTTT+AGG - chr5_2:49691496-49691515 Msa0774090:intron 35.0%
TAAGAAGACACAAAAAGCTG+TGG - chr5_2:49691540-49691559 Msa0774090:intron 35.0%
TATTCACAATCCCCTTACTA+AGG + chr5_2:49691570-49691589 None:intergenic 35.0%
TCACATCTCAAATGTTGCAT+TGG + chr5_2:49691607-49691626 None:intergenic 35.0%
! ATGCAACATTTGAGATGTGA+TGG - chr5_2:49691607-49691626 Msa0774090:intron 35.0%
! TGCAACATTTGAGATGTGAT+GGG - chr5_2:49691608-49691627 Msa0774090:intron 35.0%
! TGAAACTGAGGTTTCTGTTT+TGG - chr5_2:49691696-49691715 Msa0774090:CDS 35.0%
GATTCTTTCTCAAGCCTTTA+AGG + chr5_2:49691833-49691852 None:intergenic 35.0%
!! GTCTCCTTTGTTTGTTTTTC+TGG - chr5_2:49691886-49691905 Msa0774090:CDS 35.0%
TGTACAAAATAGAGGAGTTG+TGG - chr5_2:49691952-49691971 Msa0774090:five_prime_UTR 35.0%
TAAGGCTCTATTTACGAGTT+TGG + chr5_2:49691981-49692000 None:intergenic 35.0%
!! AAGAGCTTTGTTCAAAGCAG+AGG - chr5_2:49689351-49689370 Msa0774090:three_prime_UTR 40.0%
CGTGGATGGTTAATGAATTG+TGG - chr5_2:49689831-49689850 Msa0774090:CDS 40.0%
TCGATGACTAATATCTACCG+AGG + chr5_2:49690011-49690030 None:intergenic 40.0%
ATATATCTCCATTCGGTTGC+AGG + chr5_2:49690255-49690274 None:intergenic 40.0%
CAGTGACTTCTTTAACACCA+CGG + chr5_2:49690298-49690317 None:intergenic 40.0%
ACTGAATGGATGTCCAATGT+AGG - chr5_2:49690314-49690333 Msa0774090:CDS 40.0%
! TACTTTGAAAGCTCTGATGC+AGG + chr5_2:49690641-49690660 None:intergenic 40.0%
!!! CACCTTTTTGAAGTATCAGC+AGG - chr5_2:49690695-49690714 Msa0774090:intron 40.0%
GACCTGCTGATACTTCAAAA+AGG + chr5_2:49690700-49690719 None:intergenic 40.0%
! GATTCTCTTGTAATGGGAGA+AGG - chr5_2:49690722-49690741 Msa0774090:intron 40.0%
!! CAACTTGTTTGACTTGTGCA+AGG + chr5_2:49690754-49690773 None:intergenic 40.0%
GTCAAACAAGTTGTGAAAGC+TGG - chr5_2:49690761-49690780 Msa0774090:intron 40.0%
AAAGCTGGACAAGGAGTTAA+TGG - chr5_2:49690776-49690795 Msa0774090:intron 40.0%
CATTCTTGCATTTCCATGTG+AGG + chr5_2:49690945-49690964 None:intergenic 40.0%
TGTCATTGGAGCTGGTAAAA+TGG - chr5_2:49690967-49690986 Msa0774090:CDS 40.0%
GTCATTGGAGCTGGTAAAAT+GGG - chr5_2:49690968-49690987 Msa0774090:CDS 40.0%
TCATTGGAGCTGGTAAAATG+GGG - chr5_2:49690969-49690988 Msa0774090:CDS 40.0%
GTAGTTGTTAATCGAACCGA+AGG - chr5_2:49691037-49691056 Msa0774090:CDS 40.0%
! CATTCGAGCATTTCTGAAAG+GGG + chr5_2:49691115-49691134 None:intergenic 40.0%
TCCTTTAGCAAGCGAAGAAA+TGG - chr5_2:49691213-49691232 Msa0774090:intron 40.0%
CCTTTAGCAAGCGAAGAAAT+GGG - chr5_2:49691214-49691233 Msa0774090:intron 40.0%
ATTTCTGTTCCGAGAAACGT+AGG - chr5_2:49691259-49691278 Msa0774090:intron 40.0%
ACACATGAACCTACGTTTCT+CGG + chr5_2:49691271-49691290 None:intergenic 40.0%
CGATGATCTTGAGTCTGTTA+AGG - chr5_2:49691291-49691310 Msa0774090:intron 40.0%
TCTTAGCCTATCCTCTTTGT+TGG + chr5_2:49691353-49691372 None:intergenic 40.0%
GGATAGGCTAAGAAAAGCAA+TGG - chr5_2:49691360-49691379 Msa0774090:intron 40.0%
! ATGGAAGCACAAGTGATCAT+CGG - chr5_2:49691379-49691398 Msa0774090:intron 40.0%
! AATCGGGACAATTTGAAGCT+TGG - chr5_2:49691407-49691426 Msa0774090:intron 40.0%
GGGCTTATGCTGAAAGATTA+AGG - chr5_2:49691470-49691489 Msa0774090:intron 40.0%
! TTCTCAAGCCTTTAAGGGTA+AGG + chr5_2:49691827-49691846 None:intergenic 40.0%
! TGAAAGAGGCACACACATTA+AGG + chr5_2:49691999-49692018 None:intergenic 40.0%
ATGTGTGTGCCTCTTTCAAT+CGG - chr5_2:49692001-49692020 Msa0774090:five_prime_UTR 40.0%
AGGAGCAGCATTGTCGTTAT+AGG - chr5_2:49690104-49690123 Msa0774090:CDS 45.0%
GGAGCAGCATTGTCGTTATA+GGG - chr5_2:49690105-49690124 Msa0774090:CDS 45.0%
TTGCCATACCAGAAGCAGAA+TGG - chr5_2:49690168-49690187 Msa0774090:CDS 45.0%
CAGGTTACAAAGCTCACCAA+TGG + chr5_2:49690201-49690220 None:intergenic 45.0%
CAAGTTGTGAAAGCTGGACA+AGG - chr5_2:49690767-49690786 Msa0774090:intron 45.0%
GGACAAGGAGTTAATGGCTT+TGG - chr5_2:49690782-49690801 Msa0774090:intron 45.0%
! CTGCAATGTTGGTCTCAGTT+CGG + chr5_2:49690859-49690878 None:intergenic 45.0%
TGGTGCAGTTTCTGTTAGCT+CGG - chr5_2:49690880-49690899 Msa0774090:CDS 45.0%
TTACCTGATCAAGCCTCACA+TGG - chr5_2:49690929-49690948 Msa0774090:CDS 45.0%
TTTCCATGTGAGGCTTGATC+AGG + chr5_2:49690935-49690954 None:intergenic 45.0%
AGAATGCTTGTCATTGGAGC+TGG - chr5_2:49690959-49690978 Msa0774090:CDS 45.0%
! CCCATTTCTTCGCTTGCTAA+AGG + chr5_2:49691217-49691236 None:intergenic 45.0%
TTAGCAAGCGAAGAAATGGG+AGG - chr5_2:49691217-49691236 Msa0774090:intron 45.0%
AGTGATCATCGGCGAAGAAT+CGG - chr5_2:49691390-49691409 Msa0774090:intron 45.0%
AGCTGTGGATGACCTTAGTA+AGG - chr5_2:49691555-49691574 Msa0774090:intron 45.0%
GCTGTGGATGACCTTAGTAA+GGG - chr5_2:49691556-49691575 Msa0774090:intron 45.0%
CTGTGGATGACCTTAGTAAG+GGG - chr5_2:49691557-49691576 Msa0774090:intron 45.0%
! GATGTGATGGGAGTGATAGT+AGG - chr5_2:49691620-49691639 Msa0774090:intron 45.0%
GGAGCAGAAGATTAGAGCTA+AGG - chr5_2:49691717-49691736 Msa0774090:CDS 45.0%
GCAGAAGATTAGAGCTAAGG+TGG - chr5_2:49691720-49691739 Msa0774090:CDS 45.0%
GGCTCTATTTACGAGTTTGG+AGG + chr5_2:49691978-49691997 None:intergenic 45.0%
!!! CAATTTTTTTATTAATAATT+TGG - chr5_2:49689567-49689586 Msa0774090:CDS 5.0%
! AGTTTTTCGCGCACATCGAC+TGG + chr5_2:49690149-49690168 None:intergenic 50.0%
AGGCCATTCTGCTTCTGGTA+TGG + chr5_2:49690174-49690193 None:intergenic 50.0%
CAAAGCTCACCAATGGCTCT+AGG + chr5_2:49690194-49690213 None:intergenic 50.0%
TCTGAGTACCTGCAACCGAA+TGG - chr5_2:49690244-49690263 Msa0774090:CDS 50.0%
! GGCTTTGGCAGAAACATCAG+TGG - chr5_2:49690797-49690816 Msa0774090:intron 50.0%
TTCAAGCACGCAATCACCGT+CGG - chr5_2:49690824-49690843 Msa0774090:intron 50.0%
ACGCAATCACCGTCGGTAAA+AGG - chr5_2:49690831-49690850 Msa0774090:CDS 50.0%
CGCAATCACCGTCGGTAAAA+GGG - chr5_2:49690832-49690851 Msa0774090:CDS 50.0%
! AGTTCGGACCCTTTTACCGA+CGG + chr5_2:49690843-49690862 None:intergenic 50.0%
ACTGAGACCAACATTGCAGC+TGG - chr5_2:49690860-49690879 Msa0774090:CDS 50.0%
AACTGCACCAGCTGCAATGT+TGG + chr5_2:49690870-49690889 None:intergenic 50.0%
GATTTCTGCGACTCTCCCTT+CGG + chr5_2:49691056-49691075 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+AGG - chr5_2:49691344-49691363 Msa0774090:intron 50.0%
GTGATCATCGGCGAAGAATC+GGG - chr5_2:49691391-49691410 Msa0774090:intron 50.0%
! GCTCTAGGCCATTCTGCTTC+TGG + chr5_2:49690179-49690198 None:intergenic 55.0%
GCAGAATGGCCTAGAGCCAT+TGG - chr5_2:49690182-49690201 Msa0774090:CDS 55.0%
GGTTGTGGCTGCCAACAAAG+AGG - chr5_2:49691339-49691358 Msa0774090:intron 55.0%
GTCGCACTTTCTCAGCACCG+TGG - chr5_2:49690278-49690297 Msa0774090:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 49689095 49692062 49689095 ID=Msa0774090;Name=Msa0774090
chr5_2 mRNA 49689095 49692062 49689095 ID=Msa0774090-mRNA-1;Parent=Msa0774090;Name=Msa0774090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=130|1|1|1|1|1|3|303|542
chr5_2 exon 49689095 49690531 49689095 ID=Msa0774090-mRNA-1:exon:14906;Parent=Msa0774090-mRNA-1
chr5_2 exon 49690826 49691067 49690826 ID=Msa0774090-mRNA-1:exon:14905;Parent=Msa0774090-mRNA-1
chr5_2 exon 49691680 49692062 49691680 ID=Msa0774090-mRNA-1:exon:14904;Parent=Msa0774090-mRNA-1
chr5_2 five_prime_UTR 49691933 49692062 49691933 ID=Msa0774090-mRNA-1:five_prime_utr;Parent=Msa0774090-mRNA-1
chr5_2 CDS 49691680 49691932 49691680 ID=Msa0774090-mRNA-1:cds;Parent=Msa0774090-mRNA-1
chr5_2 CDS 49690826 49691067 49690826 ID=Msa0774090-mRNA-1:cds;Parent=Msa0774090-mRNA-1
chr5_2 CDS 49689398 49690531 49689398 ID=Msa0774090-mRNA-1:cds;Parent=Msa0774090-mRNA-1
chr5_2 three_prime_UTR 49689095 49689397 49689095 ID=Msa0774090-mRNA-1:three_prime_utr;Parent=Msa0774090-mRNA-1
Gene Sequence

>Msa0774090

ATGGCTGTTTCAACTAGTTTCTATGGTGCTAAATTGGAACCTTTGTTCCTTAAATGTTGTTCTTCTTCTTCAACAACATCTTCCTCTTATGTTACTACTCATTTATCATTTTTTGGTAGTAACAAAAAGAGCTTTGTTCAAAGCAGAGGTTCAATTCGTTGTGACGCTTCATCTTCTGATGTTTTTGTTGATCCTAGTGATAATGCTAAATCTGTTTCTGCTTTACAACAGCTTAAAGCTTCTGCAGTTGATAGATATACAAAGGAAAGGAGCAGCATTGTCGTTATAGGGCTAAGTATTCATACTACACCAGTCGATGTGCGCGAAAAACTTGCCATACCAGAAGCAGAATGGCCTAGAGCCATTGGTGAGCTTTGTAACCTGAATCATATTGAAGAAGCTGCAGTTCTGAGTACCTGCAACCGAATGGAGATATATGTTGTCGCACTTTCTCAGCACCGTGGTGTTAAAGAAGTCACTGAATGGATGTCCAATACAAGTGGTATACCTGCATCAGAGCTTTCAAAGTATCTATTTTTGCTATACAACAAAGATGCAACACAACACCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTAATGGGAGAAGGTCAAATCCTTGCACAAGTCAAACAAGTTGTGAAAGCTGGACAAGGAGTTAATGGCTTTGGCAGAAACATCAGTGGTCTATTCAAGCACGCAATCACCGTCGGTAAAAGGGTCCGAACTGAGACCAACATTGCAGCTGGTGCAGTTTCTGTTAGCTCGGCTGCAGTCGAATTAGCCTTGATGAAGTTACCTGATCAAGCCTCACATGGAAATGCAAGAATGCTTGTCATTGGAGCTGGTAAAATGGGGAAGCTTGTGATCAAACATTTGGTTGCAAAAGGGTGTAAAAAGATGGTAGTTGTTAATCGAACCGAAGGGAGAGTCGCAGAAATCCGTGAAGAAATAAATGATGTTGAGATAATTTACAAACCCCTTTCAGAAATGCTCGAATGTATTGGTGAAGCAGATGTTGTTTTCACAAGCACTGCATCAGAGAATCCTTTGATTTTGAAAGAAAATGTTAAGGAACTTCCTTTAGCAAGCGAAGAAATGGGAGGAAAACGCCTCTTCGTAGATATTTCTGTTCCGAGAAACGTAGGTTCATGTGTCGATGATCTTGAGTCTGTTAAGGTTTACAATGTTGATGATCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATAGGCTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGACAATTTGAAGCTTGGAGAGACTCATTAGAAACTGTTCCAACCATTAAGAAATTAAGGGCTTATGCTGAAAGATTAAGGGTTGCAGAACTTGAGAAATGTTTAGGTAAAATGGGTGATGATATAAATAAGAAGACACAAAAAGCTGTGGATGACCTTAGTAAGGGGATTGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAGACACTTGAGAATATGCATGCTTTGAACAGAATGTTTAGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAGGTGGAGCAAAAACCACAGTAA

Protein sequence

>Msa0774090

MAVSTSFYGAKLEPLFLKCCSSSSTTSSSYVTTHLSFFGSNKKSFVQSRGSIRCDASSSDVFVDPSDNAKSVSALQQLKASAVDRYTKERSSIVVIGLSIHTTPVDVREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSNTSGIPASELSKYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEGRVAEIREEINDVEIIYKPLSEMLECIGEADVVFTSTASENPLILKENVKELPLASEEMGGKRLFVDISVPRNVGSCVDDLESVKVYNVDDLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDINKKTQKAVDDLSKGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSVLEQKIRAKVEQKPQ*