Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372790 | XP_039689603.1 | 97.868 | 469 | 8 | 2 | 1 | 468 | 1 | 468 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372790 | sp|F4I9Q5|DEXH7_ARATH | 53.448 | 464 | 187 | 13 | 17 | 468 | 31 | 477 | 4.71e-129 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372790 | A0A396IHX7 | 97.868 | 469 | 8 | 2 | 1 | 468 | 1 | 468 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064920 | Msa1372790 | 0.815920 | 7.220309e-52 | -8.615850e-47 |
| Msa0091780 | Msa1372790 | 0.805197 | 1.499242e-49 | -8.615850e-47 |
| Msa0116270 | Msa1372790 | 0.815798 | 7.685378e-52 | -8.615850e-47 |
| Msa1353550 | Msa1372790 | 0.808916 | 2.448581e-50 | -8.615850e-47 |
| Msa1372790 | Msa1426910 | 0.807148 | 5.822449e-50 | -8.615850e-47 |
| Msa1372790 | Msa1463010 | 0.803001 | 4.292670e-49 | -8.615850e-47 |
| Msa1372790 | Msa1464370 | 0.810349 | 1.204712e-50 | -8.615850e-47 |
| Msa0658950 | Msa1372790 | 0.812473 | 4.166414e-51 | -8.615850e-47 |
| Msa0687450 | Msa1372790 | 0.823327 | 1.470667e-53 | -8.615850e-47 |
| Msa0749400 | Msa1372790 | 0.824028 | 1.007670e-53 | -8.615850e-47 |
| Msa0126230 | Msa1372790 | 0.813595 | 2.364550e-51 | -8.615850e-47 |
| Msa0137540 | Msa1372790 | 0.847279 | 1.278672e-59 | -8.615850e-47 |
| Msa0222160 | Msa1372790 | 0.804505 | 2.091634e-49 | -8.615850e-47 |
| Msa1254620 | Msa1372790 | 0.836077 | 1.156070e-56 | -8.615850e-47 |
| Msa1268680 | Msa1372790 | 0.837234 | 5.860928e-57 | -8.615850e-47 |
| Msa0423840 | Msa1372790 | 0.811006 | 8.687124e-51 | -8.615850e-47 |
| Msa0989530 | Msa1372790 | 0.806491 | 8.017754e-50 | -8.615850e-47 |
| Msa1067140 | Msa1372790 | 0.803932 | 2.752763e-49 | -8.615850e-47 |
| Msa1095790 | Msa1372790 | 0.844927 | 5.582070e-59 | -8.615850e-47 |
| Msa0263680 | Msa1372790 | 0.844319 | 8.136596e-59 | -8.615850e-47 |
| Msa0279390 | Msa1372790 | 0.809068 | 2.271073e-50 | -8.615850e-47 |
| Msa0318880 | Msa1372790 | 0.803102 | 4.091225e-49 | -8.615850e-47 |
| Msa0338960 | Msa1372790 | 0.815811 | 7.635842e-52 | -8.615850e-47 |
| Msa1201640 | Msa1372790 | 0.805369 | 1.380364e-49 | -8.615850e-47 |
| Msa1217670 | Msa1372790 | 0.841887 | 3.618462e-58 | -8.615850e-47 |
| Msa0510290 | Msa1372790 | 0.809040 | 2.303028e-50 | -8.615850e-47 |
| Msa0547680 | Msa1372790 | 0.848411 | 6.236819e-60 | -8.615850e-47 |
| Msa0554670 | Msa1372790 | 0.800043 | 1.734255e-48 | -8.615850e-47 |
| Msa0969330 | Msa1372790 | 0.811167 | 8.015601e-51 | -8.615850e-47 |
| Msa0969780 | Msa1372790 | 0.806755 | 7.050480e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372790 | MtrunA17_Chr4g0077061 | 97.868 | 469 | 8 | 2 | 1 | 468 | 1 | 468 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372790 | AT1G58060.1 | 53.448 | 464 | 187 | 13 | 17 | 468 | 31 | 477 | 4.79e-130 | 410 |
| Msa1372790 | AT1G58050.1 | 41.010 | 495 | 232 | 12 | 1 | 468 | 1 | 462 | 9.66e-84 | 282 |
Find 130 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTCCCATCCTGATTTC+TGG | 0.103864 | tig0019320:+10285 | Msa1372790:intergenic |
| TGAAAGTTAAAGGACGAATT+TGG | 0.142918 | tig0019320:+9860 | Msa1372790:intergenic |
| CTAAACCATAGAATCATAAA+TGG | 0.205670 | tig0019320:+10093 | Msa1372790:intergenic |
| GTTACAATAAAATAACTTAA+AGG | 0.212753 | tig0019320:+9910 | Msa1372790:intergenic |
| CGGCGGCTGCTGCTGAACTC+TGG | 0.225933 | tig0019320:-12524 | Msa1372790:CDS |
| TGAGCTTGGTGGTTTCTTCT+TGG | 0.228587 | tig0019320:-11072 | Msa1372790:CDS |
| TGATTCTATGGTTTAGAAAA+AGG | 0.235107 | tig0019320:-10086 | Msa1372790:three_prime_UTR |
| TCCTTAGTTGTGACTGTGTC+TGG | 0.244212 | tig0019320:+12098 | Msa1372790:intergenic |
| TATGCCCATTTATGATTCTA+TGG | 0.247111 | tig0019320:-10098 | Msa1372790:exon |
| TCAAATTGAGCTTGCTCTTT+CGG | 0.283086 | tig0019320:-12387 | Msa1372790:CDS |
| TTTATTGCTCCTTCATTAGA+AGG | 0.310692 | tig0019320:+11200 | Msa1372790:intergenic |
| ACTGATTTGCTCGTATTCTA+AGG | 0.313390 | tig0019320:+11316 | Msa1372790:intergenic |
| TACAAAGGCAAAGGAGAAAA+AGG | 0.314348 | tig0019320:-11513 | Msa1372790:CDS |
| GAAAGTTAAAGGACGAATTT+GGG | 0.318177 | tig0019320:+9861 | Msa1372790:intergenic |
| AGGATTATCAGATGACAATT+TGG | 0.321511 | tig0019320:-11339 | Msa1372790:CDS |
| TCTAATGAAGGAGCAATAAA+TGG | 0.324787 | tig0019320:-11197 | Msa1372790:CDS |
| TGGATAAATTAGATGGCATT+TGG | 0.336052 | tig0019320:-10965 | Msa1372790:CDS |
| GCGTACACTATCAATTAGTT+AGG | 0.350975 | tig0019320:+10020 | Msa1372790:intergenic |
| CCTTCGAATCATCTCTTGAT+TGG | 0.352671 | tig0019320:-12268 | Msa1372790:CDS |
| CGCCGAAACCGAAAAGGAAT+TGG | 0.354537 | tig0019320:-12610 | Msa1372790:CDS |
| GAGTTACTTTCTTCATCAAT+TGG | 0.373035 | tig0019320:+11236 | Msa1372790:intergenic |
| GGGGCAAGAATCGGAAAGCC+GGG | 0.384975 | tig0019320:-10187 | Msa1372790:CDS |
| GGCGGCTGCTGCTGAACTCT+GGG | 0.393441 | tig0019320:-12523 | Msa1372790:CDS |
| TACATTCTTCTCAAGCAGAT+TGG | 0.402219 | tig0019320:-12022 | Msa1372790:CDS |
| CTTGAGTGGAAGTTCATTAC+CGG | 0.405080 | tig0019320:+12229 | Msa1372790:intergenic |
| GCTGCTGCTGAACTCTGGGC+GGG | 0.407011 | tig0019320:-12519 | Msa1372790:CDS |
| AGGGGCAAGAATCGGAAAGC+CGG | 0.408004 | tig0019320:-10188 | Msa1372790:CDS |
| CCAAAATTCAATAAAATACT+TGG | 0.413271 | tig0019320:-10263 | Msa1372790:CDS |
| TCGTCAAACTCCGTCGCAGC+AGG | 0.417771 | tig0019320:+12488 | Msa1372790:intergenic |
| CCCTCTCAAGGAGGTTCTGT+TGG | 0.419765 | tig0019320:-12182 | Msa1372790:CDS |
| GGGCAAGAATCGGAAAGCCG+GGG | 0.421597 | tig0019320:-10186 | Msa1372790:CDS |
| GAAAATTATACTTGGGAAGA+TGG | 0.426697 | tig0019320:-11877 | Msa1372790:CDS |
| CGAGAGGTATGAGATTTGAT+TGG | 0.427223 | tig0019320:-10061 | Msa1372790:three_prime_UTR |
| CTTCTCAAGCAGATTGGATC+AGG | 0.431726 | tig0019320:-12016 | Msa1372790:CDS |
| AGCTGATGAAGAATAGCCTT+TGG | 0.433596 | tig0019320:+10311 | Msa1372790:intergenic |
| TGCAGGATGAAAATTATACT+TGG | 0.434487 | tig0019320:-11885 | Msa1372790:intron |
| ATTAGATGGCATTTGGAAGA+AGG | 0.434727 | tig0019320:-10958 | Msa1372790:intron |
| CATCAGCTATGCCAGAAATC+AGG | 0.435837 | tig0019320:-10296 | Msa1372790:CDS |
| AACAACAACACAACAATTCA+AGG | 0.435943 | tig0019320:-12136 | Msa1372790:CDS |
| GCTTGGTGGTTTCTTCTTGG+AGG | 0.437641 | tig0019320:-11069 | Msa1372790:CDS |
| AAGAACTTGGATAAATTAGA+TGG | 0.440100 | tig0019320:-10972 | Msa1372790:CDS |
| AGTTACTTTCTTCATCAATT+GGG | 0.441138 | tig0019320:+11237 | Msa1372790:intergenic |
| TCAAAGATCTCATTCTGATC+TGG | 0.442412 | tig0019320:+10143 | Msa1372790:intergenic |
| TATCATACGAAAACTGAAAC+AGG | 0.447976 | tig0019320:-11462 | Msa1372790:CDS |
| GGCAAGAATCGGAAAGCCGG+GGG | 0.451114 | tig0019320:-10185 | Msa1372790:CDS |
| TGCATCTGAGGGAGCATCCA+TGG | 0.459285 | tig0019320:-11285 | Msa1372790:CDS |
| TGTGGATTAAAAGCGGAGAT+TGG | 0.460995 | tig0019320:+12075 | Msa1372790:intergenic |
| TCCTTGGCAATAACATCATA+AGG | 0.461872 | tig0019320:+11560 | Msa1372790:intergenic |
| AAAGAGAAATACCTTGTTTG+CGG | 0.472324 | tig0019320:+11834 | Msa1372790:intergenic |
| ACGCAGTATGCTAACAGTAT+AGG | 0.481520 | tig0019320:+10223 | Msa1372790:intergenic |
| CTTCCACTCAAGTTCTCCTC+TGG | 0.481704 | tig0019320:-12218 | Msa1372790:CDS |
| AAGATTATCTGAGAAGAACT+TGG | 0.481734 | tig0019320:-10985 | Msa1372790:CDS |
| GGAGTATCTTGCTGCAAGGT+TGG | 0.481914 | tig0019320:-11540 | Msa1372790:CDS |
| CATCATCATCGTGTCTCTTG+TGG | 0.482676 | tig0019320:+12057 | Msa1372790:intergenic |
| TTTCTGCTGAAAATGAGAAT+CGG | 0.483928 | tig0019320:-12550 | Msa1372790:CDS |
| TACTGCGTAAAGCTAGTGGC+AGG | 0.484177 | tig0019320:-10208 | Msa1372790:CDS |
| GGAATTGGAAAGAAGAGAAT+CGG | 0.489060 | tig0019320:-12595 | Msa1372790:CDS |
| CCTTAGTTGTGACTGTGTCT+GGG | 0.491597 | tig0019320:+12099 | Msa1372790:intergenic |
| AGATGGCGCCGAAACCGAAA+AGG | 0.495927 | tig0019320:-12616 | Msa1372790:CDS |
| ACCAACAGAACCTCCTTGAG+AGG | 0.497600 | tig0019320:+12181 | Msa1372790:intergenic |
| CTTATTAGCTCTGCGAACCT+AGG | 0.505710 | tig0019320:-11583 | Msa1372790:intron |
| TAAACCATAGAATCATAAAT+GGG | 0.506722 | tig0019320:+10094 | Msa1372790:intergenic |
| GATTCTGCAGAAGGAGTGGC+TGG | 0.509275 | tig0019320:-11101 | Msa1372790:CDS |
| GCTTGCTCTTTCGGCTCTCA+AGG | 0.509291 | tig0019320:-12378 | Msa1372790:intron |
| GTGACTGTGTCTGGGATGGA+TGG | 0.516688 | tig0019320:+12107 | Msa1372790:intergenic |
| CAGGCAATATGTCGAGCAGC+AGG | 0.517161 | tig0019320:-11997 | Msa1372790:CDS |
| GCAATAACATCATAAGGCCT+AGG | 0.520898 | tig0019320:+11566 | Msa1372790:intergenic |
| TTCAATAAAATACTTGGCAG+AGG | 0.521975 | tig0019320:-10257 | Msa1372790:CDS |
| AAAGAAGAGAATCGGCGAAA+AGG | 0.524981 | tig0019320:-12587 | Msa1372790:CDS |
| GCTGGAGACATTGAGCTTGG+TGG | 0.527391 | tig0019320:-11083 | Msa1372790:CDS |
| CGTACACTATCAATTAGTTA+GGG | 0.528293 | tig0019320:+10021 | Msa1372790:intergenic |
| TCAGCAGAAATTTGCAGCTG+AGG | 0.530556 | tig0019320:+12563 | Msa1372790:intergenic |
| ACCTCCTTGAGAGGGATGAG+AGG | 0.535265 | tig0019320:+12190 | Msa1372790:intergenic |
| GCCTTATGATGTTATTGCCA+AGG | 0.536903 | tig0019320:-11561 | Msa1372790:CDS |
| TATCAAAGGCTCGTGGCCCA+TGG | 0.537174 | tig0019320:+11268 | Msa1372790:intergenic |
| CTCCGTCGCAGCAGGGATGG+TGG | 0.537356 | tig0019320:+12496 | Msa1372790:intergenic |
| GGCTGCTGCTGAACTCTGGG+CGG | 0.538070 | tig0019320:-12520 | Msa1372790:CDS |
| CCCAGACACAGTCACAACTA+AGG | 0.538364 | tig0019320:-12099 | Msa1372790:CDS |
| CTGAAAATGAGAATCGGCTT+CGG | 0.538814 | tig0019320:-12544 | Msa1372790:CDS |
| GGCCACCATCCCTGCTGCGA+CGG | 0.540217 | tig0019320:-12498 | Msa1372790:CDS |
| CAGTACTAACCATGCATCTG+AGG | 0.540341 | tig0019320:-11297 | Msa1372790:CDS |
| AGTTGTGACTGTGTCTGGGA+TGG | 0.542573 | tig0019320:+12103 | Msa1372790:intergenic |
| CCTTGCAGCAAGATACTCCT+TGG | 0.544686 | tig0019320:+11544 | Msa1372790:intergenic |
| ACTTCCTCTCATCCCTCTCA+AGG | 0.547022 | tig0019320:-12194 | Msa1372790:CDS |
| GCAGGATGAAAATTATACTT+GGG | 0.548238 | tig0019320:-11884 | Msa1372790:intron |
| AAACTCCGTCGCAGCAGGGA+TGG | 0.551721 | tig0019320:+12493 | Msa1372790:intergenic |
| CTAGTGGCAGGGGCAAGAAT+CGG | 0.553139 | tig0019320:-10196 | Msa1372790:CDS |
| TGGTTATGCTTGAATTTGCC+CGG | 0.554376 | tig0019320:-12248 | Msa1372790:CDS |
| AAACAGGAGCTGTCTGCCCT+AGG | 0.556224 | tig0019320:-11446 | Msa1372790:intron |
| CGAGCAGCAGGAAGAAGAAG+AGG | 0.559360 | tig0019320:-11985 | Msa1372790:CDS |
| TTTGTGCTTTCAAAATATCA+GGG | 0.560333 | tig0019320:+11024 | Msa1372790:intergenic |
| TAAAATAACTTAAAGGACCA+CGG | 0.562901 | tig0019320:+9917 | Msa1372790:intergenic |
| GCAAGAATCGGAAAGCCGGG+GGG | 0.567245 | tig0019320:-10184 | Msa1372790:CDS |
| TCAGGGTGTATTTCATTAGA+CGG | 0.567468 | tig0019320:+11041 | Msa1372790:intergenic |
| CTGCGTAAAGCTAGTGGCAG+GGG | 0.572824 | tig0019320:-10206 | Msa1372790:CDS |
| TGGAAGTGGTGCCGCAAACA+AGG | 0.576899 | tig0019320:-11845 | Msa1372790:intron |
| AAAATAACTTAAAGGACCAC+GGG | 0.579330 | tig0019320:+9918 | Msa1372790:intergenic |
| TGGATGCTCCCTCAGATGCA+TGG | 0.585928 | tig0019320:+11288 | Msa1372790:intergenic |
| AGCAATAAATGGTAGTGATG+TGG | 0.587789 | tig0019320:-11186 | Msa1372790:CDS |
| TGCAAGGTTGGAAGCTACAA+AGG | 0.588309 | tig0019320:-11528 | Msa1372790:CDS |
| GCATCTGAGGGAGCATCCAT+GGG | 0.589967 | tig0019320:-11284 | Msa1372790:CDS |
| TATGAGAAACTCTCTTGCGA+AGG | 0.590918 | tig0019320:-12422 | Msa1372790:CDS |
| GTTCCAGAGGAGAACTTGAG+TGG | 0.592097 | tig0019320:+12215 | Msa1372790:intergenic |
| GTTTGACGATACTCTAACAA+AGG | 0.597419 | tig0019320:-12474 | Msa1372790:CDS |
| CCAAGGAGTATCTTGCTGCA+AGG | 0.600633 | tig0019320:-11544 | Msa1372790:CDS |
| AAAAGATTCTGCAGAAGGAG+TGG | 0.603203 | tig0019320:-11105 | Msa1372790:CDS |
| GCAGCAGGAAGAAGAAGAGG+AGG | 0.606552 | tig0019320:-11982 | Msa1372790:intron |
| ACTTAGGCAAATTGTTCCCG+TGG | 0.611402 | tig0019320:-9934 | Msa1372790:three_prime_UTR |
| GTTGGAAGCTACAAAGGCAA+AGG | 0.612394 | tig0019320:-11522 | Msa1372790:CDS |
| GGACCCTCAAAAGGTTCCAA+AGG | 0.612985 | tig0019320:-10327 | Msa1372790:CDS |
| TTGAGTGGAAGTTCATTACC+GGG | 0.613842 | tig0019320:+12230 | Msa1372790:intergenic |
| GTGGCTGGAGACATTGAGCT+TGG | 0.613882 | tig0019320:-11086 | Msa1372790:CDS |
| TGTGTCTGGGATGGATGGAT+CGG | 0.614084 | tig0019320:+12112 | Msa1372790:intergenic |
| AGCATACTGCGTAAAGCTAG+TGG | 0.618016 | tig0019320:-10212 | Msa1372790:CDS |
| AGAAACAGTCGCTATTGAGA+TGG | 0.618048 | tig0019320:-12633 | Msa1372790:exon |
| GGGATGAGAGGAAGTTCCAG+AGG | 0.618348 | tig0019320:+12202 | Msa1372790:intergenic |
| CCAATCAAGAGATGATTCGA+AGG | 0.621465 | tig0019320:+12268 | Msa1372790:intergenic |
| AGTACTAACCATGCATCTGA+GGG | 0.624273 | tig0019320:-11296 | Msa1372790:CDS |
| AGCTATGCCAGAAATCAGGA+TGG | 0.637750 | tig0019320:-10292 | Msa1372790:CDS |
| TACAAACAGTTACATGACTT+AGG | 0.641485 | tig0019320:-9950 | Msa1372790:three_prime_UTR |
| TGAGATCTTTGAATCTGCTG+AGG | 0.650816 | tig0019320:-10132 | Msa1372790:CDS |
| CGTCAAACTCCGTCGCAGCA+GGG | 0.652343 | tig0019320:+12489 | Msa1372790:intergenic |
| ACTGCGTAAAGCTAGTGGCA+GGG | 0.653672 | tig0019320:-10207 | Msa1372790:CDS |
| GCTATGCCAGAAATCAGGAT+GGG | 0.658456 | tig0019320:-10291 | Msa1372790:CDS |
| CCAACAGAACCTCCTTGAGA+GGG | 0.661467 | tig0019320:+12182 | Msa1372790:intergenic |
| TGTCTCTTGTGGATTAAAAG+CGG | 0.662352 | tig0019320:+12068 | Msa1372790:intergenic |
| TCCTCTCATCCCTCTCAAGG+AGG | 0.667786 | tig0019320:-12191 | Msa1372790:CDS |
| AAAATGAGAATCGGCTTCGG+CGG | 0.672661 | tig0019320:-12541 | Msa1372790:CDS |
| TGATGTGGAGCATCATAGTG+TGG | 0.691856 | tig0019320:-11171 | Msa1372790:CDS |
| TGTGGAGCATCATAGTGTGG+AGG | 0.735350 | tig0019320:-11168 | Msa1372790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATGAATTTTATGATTT+TGG | - | tig0019320:10801-10820 | Msa1372790:intron | 10.0% |
| !! | GGAAAATAAAATAAAAAAAT+TGG | + | tig0019320:11783-11802 | Msa1372790:intergenic | 10.0% |
| !! | ATAAAATTCAATTTAACCTA+GGG | + | tig0019320:11079-11098 | Msa1372790:intergenic | 15.0% |
| !! | AATAAAATTCAATTTAACCT+AGG | + | tig0019320:11080-11099 | Msa1372790:intergenic | 15.0% |
| !! | AAACTAATATACAAATATCA+AGG | - | tig0019320:11708-11727 | Msa1372790:intron | 15.0% |
| !! | AAAATAAAAAAATTGGGAAA+CGG | + | tig0019320:11776-11795 | Msa1372790:intergenic | 15.0% |
| !! | AAATAAAAAGATAAAGTTGA+TGG | + | tig0019320:11909-11928 | Msa1372790:intergenic | 15.0% |
| !!! | TCAACTTTATCTTTTTATTT+CGG | - | tig0019320:11909-11928 | Msa1372790:intron | 15.0% |
| !! | GTTACAATAAAATAACTTAA+AGG | + | tig0019320:12599-12618 | Msa1372790:intergenic | 15.0% |
| !! | GTATAGTAATAGTATAGTAT+AGG | - | tig0019320:10150-10169 | Msa1372790:CDS | 20.0% |
| !! | TGTAAAGTATATATATGAGA+TGG | + | tig0019320:10558-10577 | Msa1372790:intergenic | 20.0% |
| !!! | ATGAATTTTATGATTTTGGT+AGG | - | tig0019320:10805-10824 | Msa1372790:intron | 20.0% |
| !! | AAAATAAATCATGAACTCTT+TGG | + | tig0019320:10898-10917 | Msa1372790:intergenic | 20.0% |
| !!! | AAGAAACACCTTAATTATTT+TGG | - | tig0019320:11655-11674 | Msa1372790:intron | 20.0% |
| !! | TAATATACAAATATCAAGGA+AGG | - | tig0019320:11712-11731 | Msa1372790:intron | 20.0% |
| !! | AAATAAAAAAATTGGGAAAC+GGG | + | tig0019320:11775-11794 | Msa1372790:intergenic | 20.0% |
| !!! | TTTTACTATTTAGGGAATAT+TGG | + | tig0019320:11804-11823 | Msa1372790:intergenic | 20.0% |
| !!! | CAACTTTATCTTTTTATTTC+GGG | - | tig0019320:11910-11929 | Msa1372790:intron | 20.0% |
| !! | AAGAGTAAAAAATTACATGA+GGG | + | tig0019320:11978-11997 | Msa1372790:intergenic | 20.0% |
| !!! | CCAAGTATTTTATTGAATTT+TGG | + | tig0019320:12246-12265 | Msa1372790:intergenic | 20.0% |
| !! | CCAAAATTCAATAAAATACT+TGG | - | tig0019320:12243-12262 | Msa1372790:CDS | 20.0% |
| !! | TAAACCATAGAATCATAAAT+GGG | + | tig0019320:12415-12434 | Msa1372790:intergenic | 20.0% |
| !! | TTGGGAAAACAAAAATATAA+AGG | + | tig0019320:12630-12649 | Msa1372790:intergenic | 20.0% |
| !!! | TTGGTATATTTTGAAGACAA+AGG | + | tig0019320:10583-10602 | Msa1372790:intergenic | 25.0% |
| !! | AGTTACTTTCTTCATCAATT+GGG | + | tig0019320:11272-11291 | Msa1372790:intergenic | 25.0% |
| ! | TTCATTAGAAGGAAAAACAA+TGG | + | tig0019320:11298-11317 | Msa1372790:intergenic | 25.0% |
| !!! | ATTGTTTTTCCTTCTAATGA+AGG | - | tig0019320:11297-11316 | Msa1372790:CDS | 25.0% |
| ! | TTTGTGCTTTCAAAATATCA+GGG | + | tig0019320:11485-11504 | Msa1372790:intergenic | 25.0% |
| !! | TTTTGTGCTTTCAAAATATC+AGG | + | tig0019320:11486-11505 | Msa1372790:intergenic | 25.0% |
| ! | AAGAACTTGGATAAATTAGA+TGG | - | tig0019320:11534-11553 | Msa1372790:CDS | 25.0% |
| !!! | AACACCTTAATTATTTTGGT+TGG | - | tig0019320:11659-11678 | Msa1372790:intron | 25.0% |
| !!! | ACACCTTAATTATTTTGGTT+GGG | - | tig0019320:11660-11679 | Msa1372790:intron | 25.0% |
| ! | TCCCTAAATAGTAAAACAAA+AGG | - | tig0019320:11808-11827 | Msa1372790:intron | 25.0% |
| !!! | GCCTTTTGTTTTACTATTTA+GGG | + | tig0019320:11812-11831 | Msa1372790:intergenic | 25.0% |
| !!! | TTTATCTTTTTATTTCGGGA+TGG | - | tig0019320:11914-11933 | Msa1372790:intron | 25.0% |
| ! | AGAGTAAAAAATTACATGAG+GGG | + | tig0019320:11977-11996 | Msa1372790:intergenic | 25.0% |
| ! | GAAGAGTAAAAAATTACATG+AGG | + | tig0019320:11979-11998 | Msa1372790:intergenic | 25.0% |
| ! | CTAAACCATAGAATCATAAA+TGG | + | tig0019320:12416-12435 | Msa1372790:intergenic | 25.0% |
| ! | TGATTCTATGGTTTAGAAAA+AGG | - | tig0019320:12420-12439 | Msa1372790:CDS | 25.0% |
| ! | TAAAATAACTTAAAGGACCA+CGG | + | tig0019320:12592-12611 | Msa1372790:intergenic | 25.0% |
| ! | TCTTCTTTCCAATTCCTTTT+CGG | + | tig0019320:9907-9926 | Msa1372790:intergenic | 30.0% |
| TTTCTGCTGAAAATGAGAAT+CGG | - | tig0019320:9956-9975 | Msa1372790:three_prime_UTR | 30.0% | |
| AACAACAACACAACAATTCA+AGG | - | tig0019320:10370-10389 | Msa1372790:intron | 30.0% | |
| ATATACCAATCTTAACTGTG+TGG | - | tig0019320:10594-10613 | Msa1372790:intron | 30.0% | |
| AAATACCACACAGTTAAGAT+TGG | + | tig0019320:10602-10621 | Msa1372790:intergenic | 30.0% | |
| TGCAGGATGAAAATTATACT+TGG | - | tig0019320:10621-10640 | Msa1372790:intron | 30.0% | |
| GCAGGATGAAAATTATACTT+GGG | - | tig0019320:10622-10641 | Msa1372790:intron | 30.0% | |
| GAAAATTATACTTGGGAAGA+TGG | - | tig0019320:10629-10648 | Msa1372790:intron | 30.0% | |
| ! | AAAGAGAAATACCTTGTTTG+CGG | + | tig0019320:10675-10694 | Msa1372790:intergenic | 30.0% |
| GAATTGTATTCATATGTCTG+TGG | - | tig0019320:10746-10765 | Msa1372790:intron | 30.0% | |
| ! | TATTCATATGTCTGTGGTTT+TGG | - | tig0019320:10752-10771 | Msa1372790:intron | 30.0% |
| GAGTCAAGATCATAAATCAT+GGG | + | tig0019320:10851-10870 | Msa1372790:intergenic | 30.0% | |
| GAAAAAGGACAAAAAACATC+AGG | - | tig0019320:11008-11027 | Msa1372790:CDS | 30.0% | |
| ! | GTTTCAGTTTTCGTATGATA+CGG | + | tig0019320:11044-11063 | Msa1372790:intergenic | 30.0% |
| TATCATACGAAAACTGAAAC+AGG | - | tig0019320:11044-11063 | Msa1372790:CDS | 30.0% | |
| AGGATTATCAGATGACAATT+TGG | - | tig0019320:11167-11186 | Msa1372790:CDS | 30.0% | |
| ! | ATTGGGTCTTTTTCTATCAA+AGG | + | tig0019320:11255-11274 | Msa1372790:intergenic | 30.0% |
| ! | GAGTTACTTTCTTCATCAAT+TGG | + | tig0019320:11273-11292 | Msa1372790:intergenic | 30.0% |
| TTTATTGCTCCTTCATTAGA+AGG | + | tig0019320:11309-11328 | Msa1372790:intergenic | 30.0% | |
| TCTAATGAAGGAGCAATAAA+TGG | - | tig0019320:11309-11328 | Msa1372790:CDS | 30.0% | |
| AAGATTATCTGAGAAGAACT+TGG | - | tig0019320:11521-11540 | Msa1372790:CDS | 30.0% | |
| TGGATAAATTAGATGGCATT+TGG | - | tig0019320:11541-11560 | Msa1372790:CDS | 30.0% | |
| TTGGAAGAAGGTAAGTTTAT+TGG | - | tig0019320:11560-11579 | Msa1372790:CDS | 30.0% | |
| ACATTTCATGACTATCTTGA+TGG | - | tig0019320:11585-11604 | Msa1372790:intron | 30.0% | |
| AAGCCCAACCAAAATAATTA+AGG | + | tig0019320:11666-11685 | Msa1372790:intergenic | 30.0% | |
| !!! | GGCCTTTTGTTTTACTATTT+AGG | + | tig0019320:11813-11832 | Msa1372790:intergenic | 30.0% |
| AATTCAAGTACAGATTCATG+TGG | + | tig0019320:11834-11853 | Msa1372790:intergenic | 30.0% | |
| !! | TTTTATTTCGGGATGGTTTT+TGG | - | tig0019320:11921-11940 | Msa1372790:intron | 30.0% |
| !!! | TTTTGGTTTGGTGGTTTTTT+TGG | - | tig0019320:11938-11957 | Msa1372790:intron | 30.0% |
| !!! | TTTGGTTTGGTGGTTTTTTT+GGG | - | tig0019320:11939-11958 | Msa1372790:intron | 30.0% |
| AAAAATTACATGAGGGGATA+AGG | + | tig0019320:11971-11990 | Msa1372790:intergenic | 30.0% | |
| !! | GTCATTTGTTTCTAAGCATT+AGG | - | tig0019320:12052-12071 | Msa1372790:CDS | 30.0% |
| !! | ATTTGTTTCTAAGCATTAGG+TGG | - | tig0019320:12055-12074 | Msa1372790:CDS | 30.0% |
| TAGCAAGAAATATATTCACG+TGG | + | tig0019320:12108-12127 | Msa1372790:intergenic | 30.0% | |
| CGTGAATATATTTCTTGCTA+TGG | - | tig0019320:12108-12127 | Msa1372790:CDS | 30.0% | |
| TTCAATAAAATACTTGGCAG+AGG | - | tig0019320:12249-12268 | Msa1372790:CDS | 30.0% | |
| TATGCCCATTTATGATTCTA+TGG | - | tig0019320:12408-12427 | Msa1372790:CDS | 30.0% | |
| CGTACACTATCAATTAGTTA+GGG | + | tig0019320:12488-12507 | Msa1372790:intergenic | 30.0% | |
| TTTACCAGAAAAAACAAAGC+TGG | - | tig0019320:12533-12552 | Msa1372790:CDS | 30.0% | |
| TACAAACAGTTACATGACTT+AGG | - | tig0019320:12556-12575 | Msa1372790:CDS | 30.0% | |
| AAAATAACTTAAAGGACCAC+GGG | + | tig0019320:12591-12610 | Msa1372790:intergenic | 30.0% | |
| ! | TTCCAATTCCTTTTCGGTTT+CGG | + | tig0019320:9901-9920 | Msa1372790:intergenic | 35.0% |
| GGAATTGGAAAGAAGAGAAT+CGG | - | tig0019320:9911-9930 | Msa1372790:three_prime_UTR | 35.0% | |
| GTTTGACGATACTCTAACAA+AGG | - | tig0019320:10032-10051 | Msa1372790:three_prime_UTR | 35.0% | |
| ! | TCAAATTGAGCTTGCTCTTT+CGG | - | tig0019320:10119-10138 | Msa1372790:CDS | 35.0% |
| TATCTTCTCTTTCTCTTTCC+AGG | - | tig0019320:10206-10225 | Msa1372790:CDS | 35.0% | |
| ! | TGTCTCTTGTGGATTAAAAG+CGG | + | tig0019320:10441-10460 | Msa1372790:intergenic | 35.0% |
| TACATTCTTCTCAAGCAGAT+TGG | - | tig0019320:10484-10503 | Msa1372790:intron | 35.0% | |
| TAGAGACAATGCAAATATCG+TGG | + | tig0019320:10725-10744 | Msa1372790:intergenic | 35.0% | |
| CGAGTCAAGATCATAAATCA+TGG | + | tig0019320:10852-10871 | Msa1372790:intergenic | 35.0% | |
| AATCATGAACTCTTTGGACA+TGG | + | tig0019320:10892-10911 | Msa1372790:intergenic | 35.0% | |
| TCCTTGGCAATAACATCATA+AGG | + | tig0019320:10949-10968 | Msa1372790:intergenic | 35.0% | |
| TACAAAGGCAAAGGAGAAAA+AGG | - | tig0019320:10993-11012 | Msa1372790:CDS | 35.0% | |
| GTGTTGTACAATCAACAAGA+CGG | + | tig0019320:11140-11159 | Msa1372790:intergenic | 35.0% | |
| !! | ACTGATTTGCTCGTATTCTA+AGG | + | tig0019320:11193-11212 | Msa1372790:intergenic | 35.0% |
| ! | AGCAATAAATGGTAGTGATG+TGG | - | tig0019320:11320-11339 | Msa1372790:CDS | 35.0% |
| !!! | TCTTTTTCAACATGTACAGC+TGG | + | tig0019320:11387-11406 | Msa1372790:intergenic | 35.0% |
| GTTGAAAAAGATTCTGCAGA+AGG | - | tig0019320:11396-11415 | Msa1372790:intron | 35.0% | |
| TCAGGGTGTATTTCATTAGA+CGG | + | tig0019320:11468-11487 | Msa1372790:intergenic | 35.0% | |
| ATTAGATGGCATTTGGAAGA+AGG | - | tig0019320:11548-11567 | Msa1372790:CDS | 35.0% | |
| TGTCTTCCAATTACTCTCAT+TGG | - | tig0019320:11626-11645 | Msa1372790:intron | 35.0% | |
| CAAATATCAAGGAAGGTGAA+AGG | - | tig0019320:11719-11738 | Msa1372790:intron | 35.0% | |
| GACAATATCCATCTCTTACT+TGG | - | tig0019320:12134-12153 | Msa1372790:CDS | 35.0% | |
| ! | TACTTGGTACAACCTGTTTT+TGG | - | tig0019320:12150-12169 | Msa1372790:CDS | 35.0% |
| !!! | GTACAACCTGTTTTTGGATA+GGG | - | tig0019320:12156-12175 | Msa1372790:CDS | 35.0% |
| !!! | TACAACCTGTTTTTGGATAG+GGG | - | tig0019320:12157-12176 | Msa1372790:CDS | 35.0% |
| TCAAAGATCTCATTCTGATC+TGG | + | tig0019320:12366-12385 | Msa1372790:intergenic | 35.0% | |
| GCGTACACTATCAATTAGTT+AGG | + | tig0019320:12489-12508 | Msa1372790:intergenic | 35.0% | |
| ! | GAGCTTTTGTAGAAAGGTTA+TGG | - | tig0019320:12510-12529 | Msa1372790:CDS | 35.0% |
| !!! | TGTACCAGCTTTGTTTTTTC+TGG | + | tig0019320:12540-12559 | Msa1372790:intergenic | 35.0% |
| AAAGAAGAGAATCGGCGAAA+AGG | - | tig0019320:9919-9938 | Msa1372790:three_prime_UTR | 40.0% | |
| ! | CTGAAAATGAGAATCGGCTT+CGG | - | tig0019320:9962-9981 | Msa1372790:three_prime_UTR | 40.0% |
| TATGAGAAACTCTCTTGCGA+AGG | - | tig0019320:10084-10103 | Msa1372790:three_prime_UTR | 40.0% | |
| CCAATCAAGAGATGATTCGA+AGG | + | tig0019320:10241-10260 | Msa1372790:intergenic | 40.0% | |
| CCTTCGAATCATCTCTTGAT+TGG | - | tig0019320:10238-10257 | Msa1372790:CDS | 40.0% | |
| TGGTTATGCTTGAATTTGCC+CGG | - | tig0019320:10258-10277 | Msa1372790:CDS | 40.0% | |
| TTGAGTGGAAGTTCATTACC+GGG | + | tig0019320:10279-10298 | Msa1372790:intergenic | 40.0% | |
| CTTGAGTGGAAGTTCATTAC+CGG | + | tig0019320:10280-10299 | Msa1372790:intergenic | 40.0% | |
| ! | TGTGGATTAAAAGCGGAGAT+TGG | + | tig0019320:10434-10453 | Msa1372790:intergenic | 40.0% |
| CTTAACTGTGTGGTATTTGC+AGG | - | tig0019320:10604-10623 | Msa1372790:intron | 40.0% | |
| ! | TGGGAAGATGGCATTTTTGA+TGG | - | tig0019320:10641-10660 | Msa1372790:intron | 40.0% |
| ! | GATGGCATTTTTGATGGAAG+TGG | - | tig0019320:10647-10666 | Msa1372790:intron | 40.0% |
| GCAATAACATCATAAGGCCT+AGG | + | tig0019320:10943-10962 | Msa1372790:intergenic | 40.0% | |
| GCCTTATGATGTTATTGCCA+AGG | - | tig0019320:10945-10964 | Msa1372790:intron | 40.0% | |
| GATTGTACAACACATTGAGC+AGG | - | tig0019320:11147-11166 | Msa1372790:CDS | 40.0% | |
| AGTACTAACCATGCATCTGA+GGG | - | tig0019320:11210-11229 | Msa1372790:CDS | 40.0% | |
| ! | CTTTTTCTATCAAAGGCTCG+TGG | + | tig0019320:11248-11267 | Msa1372790:intergenic | 40.0% |
| AAAAGATTCTGCAGAAGGAG+TGG | - | tig0019320:11401-11420 | Msa1372790:intron | 40.0% | |
| CGAACTCCAATGAGAGTAAT+TGG | + | tig0019320:11635-11654 | Msa1372790:intergenic | 40.0% | |
| !!! | TTTCGGGATGGTTTTTGGTT+TGG | - | tig0019320:11926-11945 | Msa1372790:intron | 40.0% |
| AGGTTGTACCAAGTAAGAGA+TGG | + | tig0019320:12145-12164 | Msa1372790:intergenic | 40.0% | |
| !!! | GGTACAACCTGTTTTTGGAT+AGG | - | tig0019320:12155-12174 | Msa1372790:CDS | 40.0% |
| !!! | ACAACCTGTTTTTGGATAGG+GGG | - | tig0019320:12158-12177 | Msa1372790:CDS | 40.0% |
| !!! | TAGCCTTTGGAACCTTTTGA+GGG | + | tig0019320:12185-12204 | Msa1372790:intergenic | 40.0% |
| !!! | ATAGCCTTTGGAACCTTTTG+AGG | + | tig0019320:12186-12205 | Msa1372790:intergenic | 40.0% |
| AGCTGATGAAGAATAGCCTT+TGG | + | tig0019320:12198-12217 | Msa1372790:intergenic | 40.0% | |
| ACGCAGTATGCTAACAGTAT+AGG | + | tig0019320:12286-12305 | Msa1372790:intergenic | 40.0% | |
| TGAGATCTTTGAATCTGCTG+AGG | - | tig0019320:12374-12393 | Msa1372790:intron | 40.0% | |
| ! | CGAGAGGTATGAGATTTGAT+TGG | - | tig0019320:12445-12464 | Msa1372790:CDS | 40.0% |
| ! | TACGCAGAGCTTTTGTAGAA+AGG | - | tig0019320:12504-12523 | Msa1372790:CDS | 40.0% |
| TCAGCAGAAATTTGCAGCTG+AGG | + | tig0019320:9946-9965 | Msa1372790:intergenic | 45.0% | |
| ! | AAAATGAGAATCGGCTTCGG+CGG | - | tig0019320:9965-9984 | Msa1372790:three_prime_UTR | 45.0% |
| ATTCGAAGGTAGCACATTCC+TGG | + | tig0019320:10227-10246 | Msa1372790:intergenic | 45.0% | |
| CCTTAGTTGTGACTGTGTCT+GGG | + | tig0019320:10410-10429 | Msa1372790:intergenic | 45.0% | |
| TCCTTAGTTGTGACTGTGTC+TGG | + | tig0019320:10411-10430 | Msa1372790:intergenic | 45.0% | |
| CATCATCATCGTGTCTCTTG+TGG | + | tig0019320:10452-10471 | Msa1372790:intergenic | 45.0% | |
| CTTCTCAAGCAGATTGGATC+AGG | - | tig0019320:10490-10509 | Msa1372790:intron | 45.0% | |
| !! | CTTATTAGCTCTGCGAACCT+AGG | - | tig0019320:10923-10942 | Msa1372790:intron | 45.0% |
| TGCAAGGTTGGAAGCTACAA+AGG | - | tig0019320:10978-10997 | Msa1372790:CDS | 45.0% | |
| GTTGGAAGCTACAAAGGCAA+AGG | - | tig0019320:10984-11003 | Msa1372790:CDS | 45.0% | |
| GGACAAAAAACATCAGGAGC+AGG | - | tig0019320:11014-11033 | Msa1372790:CDS | 45.0% | |
| CAGTACTAACCATGCATCTG+AGG | - | tig0019320:11209-11228 | Msa1372790:CDS | 45.0% | |
| ! | TGATGTGGAGCATCATAGTG+TGG | - | tig0019320:11335-11354 | Msa1372790:CDS | 45.0% |
| ! | TGAGCTTGGTGGTTTCTTCT+TGG | - | tig0019320:11434-11453 | Msa1372790:intron | 45.0% |
| !!! | GGTTTGGTGGTTTTTTTGGG+AGG | - | tig0019320:11942-11961 | Msa1372790:intron | 45.0% |
| CATCAGCTATGCCAGAAATC+AGG | - | tig0019320:12210-12229 | Msa1372790:CDS | 45.0% | |
| AGCTATGCCAGAAATCAGGA+TGG | - | tig0019320:12214-12233 | Msa1372790:CDS | 45.0% | |
| GCTATGCCAGAAATCAGGAT+GGG | - | tig0019320:12215-12234 | Msa1372790:CDS | 45.0% | |
| AGCATACTGCGTAAAGCTAG+TGG | - | tig0019320:12294-12313 | Msa1372790:intron | 45.0% | |
| ACTTAGGCAAATTGTTCCCG+TGG | - | tig0019320:12572-12591 | Msa1372790:CDS | 45.0% | |
| !! | GAAAATAAAATAAAAAAATT+GGG | + | tig0019320:11782-11801 | Msa1372790:intergenic | 5.0% |
| CGCCGAAACCGAAAAGGAAT+TGG | - | tig0019320:9896-9915 | Msa1372790:three_prime_UTR | 50.0% | |
| CTTCCACTCAAGTTCTCCTC+TGG | - | tig0019320:10288-10307 | Msa1372790:CDS | 50.0% | |
| GTTCCAGAGGAGAACTTGAG+TGG | + | tig0019320:10294-10313 | Msa1372790:intergenic | 50.0% | |
| ACTTCCTCTCATCCCTCTCA+AGG | - | tig0019320:10312-10331 | Msa1372790:CDS | 50.0% | |
| CCAACAGAACCTCCTTGAGA+GGG | + | tig0019320:10327-10346 | Msa1372790:intergenic | 50.0% | |
| ACCAACAGAACCTCCTTGAG+AGG | + | tig0019320:10328-10347 | Msa1372790:intergenic | 50.0% | |
| ! | TGTGTCTGGGATGGATGGAT+CGG | + | tig0019320:10397-10416 | Msa1372790:intergenic | 50.0% |
| AGTTGTGACTGTGTCTGGGA+TGG | + | tig0019320:10406-10425 | Msa1372790:intergenic | 50.0% | |
| CCCAGACACAGTCACAACTA+AGG | - | tig0019320:10407-10426 | Msa1372790:intron | 50.0% | |
| CCTTGCAGCAAGATACTCCT+TGG | + | tig0019320:10965-10984 | Msa1372790:intergenic | 50.0% | |
| !! | CCAAGGAGTATCTTGCTGCA+AGG | - | tig0019320:10962-10981 | Msa1372790:CDS | 50.0% |
| ! | GGAGTATCTTGCTGCAAGGT+TGG | - | tig0019320:10966-10985 | Msa1372790:CDS | 50.0% |
| ! | TGTGGAGCATCATAGTGTGG+AGG | - | tig0019320:11338-11357 | Msa1372790:CDS | 50.0% |
| ! | GCTTGGTGGTTTCTTCTTGG+AGG | - | tig0019320:11437-11456 | Msa1372790:intron | 50.0% |
| !!! | CGGGATGGTTTTTGGTTTGG+TGG | - | tig0019320:11929-11948 | Msa1372790:intron | 50.0% |
| GGACCCTCAAAAGGTTCCAA+AGG | - | tig0019320:12179-12198 | Msa1372790:CDS | 50.0% | |
| GAGCTTCCCATCCTGATTTC+TGG | + | tig0019320:12224-12243 | Msa1372790:intergenic | 50.0% | |
| TACTGCGTAAAGCTAGTGGC+AGG | - | tig0019320:12298-12317 | Msa1372790:intron | 50.0% | |
| ACTGCGTAAAGCTAGTGGCA+GGG | - | tig0019320:12299-12318 | Msa1372790:intron | 50.0% | |
| ! | GGTTTAGAAAAAGGCGCGAG+AGG | - | tig0019320:12429-12448 | Msa1372790:CDS | 50.0% |
| ! | AGATGGCGCCGAAACCGAAA+AGG | - | tig0019320:9890-9909 | Msa1372790:three_prime_UTR | 55.0% |
| GCTTGCTCTTTCGGCTCTCA+AGG | - | tig0019320:10128-10147 | Msa1372790:CDS | 55.0% | |
| GGGATGAGAGGAAGTTCCAG+AGG | + | tig0019320:10307-10326 | Msa1372790:intergenic | 55.0% | |
| TCCTCTCATCCCTCTCAAGG+AGG | - | tig0019320:10315-10334 | Msa1372790:CDS | 55.0% | |
| ACCTCCTTGAGAGGGATGAG+AGG | + | tig0019320:10319-10338 | Msa1372790:intergenic | 55.0% | |
| CCCTCTCAAGGAGGTTCTGT+TGG | - | tig0019320:10324-10343 | Msa1372790:CDS | 55.0% | |
| ! | GTGACTGTGTCTGGGATGGA+TGG | + | tig0019320:10402-10421 | Msa1372790:intergenic | 55.0% |
| CAGGCAATATGTCGAGCAGC+AGG | - | tig0019320:10509-10528 | Msa1372790:intron | 55.0% | |
| CGAGCAGCAGGAAGAAGAAG+AGG | - | tig0019320:10521-10540 | Msa1372790:intron | 55.0% | |
| GCAGCAGGAAGAAGAAGAGG+AGG | - | tig0019320:10524-10543 | Msa1372790:intron | 55.0% | |
| !! | TGGAAGTGGTGCCGCAAACA+AGG | - | tig0019320:10661-10680 | Msa1372790:intron | 55.0% |
| AAACAGGAGCTGTCTGCCCT+AGG | - | tig0019320:11060-11079 | Msa1372790:CDS | 55.0% | |
| TGGATGCTCCCTCAGATGCA+TGG | + | tig0019320:11221-11240 | Msa1372790:intergenic | 55.0% | |
| !! | TGCATCTGAGGGAGCATCCA+TGG | - | tig0019320:11221-11240 | Msa1372790:CDS | 55.0% |
| !! | GCATCTGAGGGAGCATCCAT+GGG | - | tig0019320:11222-11241 | Msa1372790:CDS | 55.0% |
| TATCAAAGGCTCGTGGCCCA+TGG | + | tig0019320:11241-11260 | Msa1372790:intergenic | 55.0% | |
| GATTCTGCAGAAGGAGTGGC+TGG | - | tig0019320:11405-11424 | Msa1372790:intron | 55.0% | |
| GTGGCTGGAGACATTGAGCT+TGG | - | tig0019320:11420-11439 | Msa1372790:intron | 55.0% | |
| GCTGGAGACATTGAGCTTGG+TGG | - | tig0019320:11423-11442 | Msa1372790:intron | 55.0% | |
| GGGTCCCCCTATCCAAAAAC+AGG | + | tig0019320:12165-12184 | Msa1372790:intergenic | 55.0% | |
| TGGATAGGGGGACCCTCAAA+AGG | - | tig0019320:12170-12189 | Msa1372790:CDS | 55.0% | |
| CTGCGTAAAGCTAGTGGCAG+GGG | - | tig0019320:12300-12319 | Msa1372790:intron | 55.0% | |
| CTAGTGGCAGGGGCAAGAAT+CGG | - | tig0019320:12310-12329 | Msa1372790:intron | 55.0% | |
| AGGGGCAAGAATCGGAAAGC+CGG | - | tig0019320:12318-12337 | Msa1372790:intron | 55.0% | |
| AAACTCCGTCGCAGCAGGGA+TGG | + | tig0019320:10016-10035 | Msa1372790:intergenic | 60.0% | |
| CGTCAAACTCCGTCGCAGCA+GGG | + | tig0019320:10020-10039 | Msa1372790:intergenic | 60.0% | |
| TCGTCAAACTCCGTCGCAGC+AGG | + | tig0019320:10021-10040 | Msa1372790:intergenic | 60.0% | |
| GGGGCAAGAATCGGAAAGCC+GGG | - | tig0019320:12319-12338 | Msa1372790:intron | 60.0% | |
| GGGCAAGAATCGGAAAGCCG+GGG | - | tig0019320:12320-12339 | Msa1372790:intron | 60.0% | |
| GGCAAGAATCGGAAAGCCGG+GGG | - | tig0019320:12321-12340 | Msa1372790:intron | 60.0% | |
| GCAAGAATCGGAAAGCCGGG+GGG | - | tig0019320:12322-12341 | Msa1372790:intron | 60.0% | |
| CTTAAGTGTGACCAGCCCCC+CGG | + | tig0019320:12340-12359 | Msa1372790:intergenic | 60.0% | |
| GGCGGCTGCTGCTGAACTCT+GGG | - | tig0019320:9983-10002 | Msa1372790:three_prime_UTR | 65.0% | |
| GGCTGCTGCTGAACTCTGGG+CGG | - | tig0019320:9986-10005 | Msa1372790:three_prime_UTR | 65.0% | |
| GCTGCTGCTGAACTCTGGGC+GGG | - | tig0019320:9987-10006 | Msa1372790:three_prime_UTR | 65.0% | |
| CGGCGGCTGCTGCTGAACTC+TGG | - | tig0019320:9982-10001 | Msa1372790:three_prime_UTR | 70.0% | |
| GGCCACCATCCCTGCTGCGA+CGG | - | tig0019320:10008-10027 | Msa1372790:three_prime_UTR | 70.0% | |
| CTCCGTCGCAGCAGGGATGG+TGG | + | tig0019320:10013-10032 | Msa1372790:intergenic | 70.0% | |
| GAATCGGAAAGCCGGGGGGC+TGG | - | tig0019320:12326-12345 | Msa1372790:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019320 | gene | 9874 | 12654 | 9874 | ID=Msa1372790;Name=Msa1372790 |
| tig0019320 | mRNA | 9874 | 12654 | 9874 | ID=Msa1372790-mRNA-1;Parent=Msa1372790;Name=Msa1372790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=18|1|1|1|1|1|6|232|476 |
| tig0019320 | exon | 9874 | 10351 | 9874 | ID=Msa1372790-mRNA-1:exon:2941;Parent=Msa1372790-mRNA-1 |
| tig0019320 | exon | 10959 | 11359 | 10959 | ID=Msa1372790-mRNA-1:exon:2940;Parent=Msa1372790-mRNA-1 |
| tig0019320 | exon | 11447 | 11597 | 11447 | ID=Msa1372790-mRNA-1:exon:2939;Parent=Msa1372790-mRNA-1 |
| tig0019320 | exon | 11846 | 11902 | 11846 | ID=Msa1372790-mRNA-1:exon:2938;Parent=Msa1372790-mRNA-1 |
| tig0019320 | exon | 11983 | 12300 | 11983 | ID=Msa1372790-mRNA-1:exon:2937;Parent=Msa1372790-mRNA-1 |
| tig0019320 | exon | 12379 | 12654 | 12379 | ID=Msa1372790-mRNA-1:exon:2936;Parent=Msa1372790-mRNA-1 |
| tig0019320 | five_prime_UTR | 12637 | 12654 | 12637 | ID=Msa1372790-mRNA-1:five_prime_utr;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 12379 | 12636 | 12379 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 11983 | 12300 | 11983 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 11846 | 11902 | 11846 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 11447 | 11597 | 11447 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 10959 | 11359 | 10959 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | CDS | 10106 | 10351 | 10106 | ID=Msa1372790-mRNA-1:cds;Parent=Msa1372790-mRNA-1 |
| tig0019320 | three_prime_UTR | 9874 | 10105 | 9874 | ID=Msa1372790-mRNA-1:three_prime_utr;Parent=Msa1372790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
