AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346980 MtrunA17_Chr3g0077331 94.286 525 19 5 56 575 65 583 0.0 953
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346980 AT1G72040.1 60.892 583 190 13 4 569 15 576 0.0 659

Find 174 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTATTTATTAGTATT+TGG 0.110010 3_1:-7876262 None:intergenic
ATCCTTGCTGAAATCAATAT+TGG 0.197353 3_1:-7878782 None:intergenic
CTGTAACGTTGCGTCGCTTT+TGG 0.214302 3_1:-7876430 None:intergenic
CCTGATTTGTTGGCTATTCC+TGG 0.217222 3_1:+7877026 Msa0346980:CDS
GTGAAGTTGGTAGTTATTTA+TGG 0.221870 3_1:+7880596 Msa0346980:three_prime_UTR
CTACTTGGTTTGTATTTCTT+TGG 0.242702 3_1:+7880649 Msa0346980:three_prime_UTR
TATTACTAGTGTGGCGTGTT+AGG 0.243446 3_1:-7876779 None:intergenic
CTTCATCTTTCAGACTTAAT+AGG 0.255349 3_1:+7876970 Msa0346980:CDS
TAATTTATTTATTAGTATTT+GGG 0.272393 3_1:-7876261 None:intergenic
GTAGTAATCTGTTGTTGTTC+AGG 0.276506 3_1:-7876885 None:intergenic
ATATAAAACCATCGGGAATA+AGG 0.284820 3_1:-7878388 None:intergenic
CAAAAGCGACGCAACGTTAC+AGG 0.285114 3_1:+7876431 Msa0346980:five_prime_UTR
TCCTTAACTTCATTCTTTGA+TGG 0.286569 3_1:-7878436 None:intergenic
TAGTGTGGCGTGTTAGGGTT+AGG 0.287620 3_1:-7876773 None:intergenic
ATTCTTTGATGGCAAGTATC+AGG 0.291458 3_1:-7878425 None:intergenic
AATACACGGTCTCTTATATC+AGG 0.292967 3_1:-7878605 None:intergenic
GCAGCACCTGTGGTTGGTTC+TGG 0.301226 3_1:-7880375 None:intergenic
ATCTAGTCCTCCTGATTTGT+TGG 0.334574 3_1:+7877016 Msa0346980:CDS
TGCCACTTGCCAATTGGTTC+AGG 0.335895 3_1:-7877863 None:intergenic
CTTTCTCTGTGAATTTGAAA+AGG 0.346959 3_1:+7876207 Msa0346980:five_prime_UTR
CTCCATCTCATTCATCCAAT+TGG 0.351738 3_1:-7878315 None:intergenic
CTATTCCTGGTGTGGGTCCC+AGG 0.363835 3_1:+7877039 Msa0346980:CDS
TTCTGAAGTCCAAGGGTGGC+CGG 0.369193 3_1:-7880444 None:intergenic
ACGCAGTTCAATAGTTTCAT+TGG 0.370500 3_1:-7877822 None:intergenic
GAATGAAAGAAGAAGGGTTT+AGG 0.370611 3_1:-7876594 None:intergenic
CATCAAGCCTCTTCGATTGA+TGG 0.372708 3_1:+7878012 Msa0346980:CDS
TACTCCATGATTACCACTTT+GGG 0.385460 3_1:-7878537 None:intergenic
TATTTCTTTGGTTACAAAGA+TGG 0.388884 3_1:+7880661 Msa0346980:three_prime_UTR
ACGAGGAGAAGAAGAAGAAA+AGG 0.390707 3_1:-7876709 None:intergenic
TAGTAATCTGTTGTTGTTCA+GGG 0.394332 3_1:-7876884 None:intergenic
TTCCTCTTCCTCTTCCTCTT+CGG 0.395596 3_1:+7876923 Msa0346980:CDS
CCTGTTGTGTCTACCTTGCC+TGG 0.402035 3_1:+7878365 Msa0346980:CDS
GCCATCAAAGAATGAAGTTA+AGG 0.403313 3_1:+7878435 Msa0346980:CDS
TCCTTGCTGAAATCAATATT+GGG 0.404770 3_1:-7878781 None:intergenic
TCTGAAGTCCAAGGGTGGCC+GGG 0.405588 3_1:-7880443 None:intergenic
TGAAGTTGTGTTTGTAGAAG+AGG 0.408467 3_1:-7876952 None:intergenic
GTGAAGAGGTTGGGCGGTGA+AGG 0.412419 3_1:-7876524 None:intergenic
ATTACTAGTGTGGCGTGTTA+GGG 0.417789 3_1:-7876778 None:intergenic
TAAAGAAGAATGAAAGAAGA+AGG 0.420561 3_1:-7876601 None:intergenic
AGATAAGCATTTATGACTCT+TGG 0.422063 3_1:+7878336 Msa0346980:CDS
TGGTTGTCAAATACTTCGTT+AGG 0.422519 3_1:+7880616 Msa0346980:three_prime_UTR
TACTTTCAGCATGGTTCTTG+TGG 0.426754 3_1:-7877658 None:intergenic
CTGAAGTCCAAGGGTGGCCG+GGG 0.427190 3_1:-7880442 None:intergenic
TTTCTCTGTGAATTTGAAAA+GGG 0.427497 3_1:+7876208 Msa0346980:five_prime_UTR
TGGTAATCATGGAGTATTAT+CGG 0.432768 3_1:+7878544 Msa0346980:CDS
ATTTGATACCTTCTGAATGC+TGG 0.433730 3_1:-7878654 None:intergenic
ACATCCTGCCACTTGCCAAT+TGG 0.441088 3_1:-7877869 None:intergenic
ATAGTTATCTTACTCCCTCT+TGG 0.449688 3_1:-7878812 None:intergenic
GAAGTGGATGATAATTCCTC+TGG 0.451397 3_1:+7877713 Msa0346980:CDS
CTCGTTCAGAAAGGTATTCA+AGG 0.453440 3_1:+7877074 Msa0346980:CDS
CCCTCCCAAAGTGGTAATCA+TGG 0.459472 3_1:+7878533 Msa0346980:CDS
CCAGGAATAGCCAACAAATC+AGG 0.460862 3_1:-7877026 None:intergenic
TTGTGTTGGGTGCAGTTCAT+TGG 0.461411 3_1:+7877584 Msa0346980:intron
ATACTCCATGATTACCACTT+TGG 0.465554 3_1:-7878538 None:intergenic
ATGTTTAGTTTGATTACAAA+CGG 0.469477 3_1:+7880745 Msa0346980:three_prime_UTR
TGAAAGAAGAAGGGTTTAGG+AGG 0.471130 3_1:-7876591 None:intergenic
CGACTTACGTTCTGTGTTGA+GGG 0.471827 3_1:+7877758 Msa0346980:CDS
CACAGAGAAAGAGAGACAAA+AGG 0.473624 3_1:-7876195 None:intergenic
GAGCTGTTCATGAAGCCAAT+TGG 0.476172 3_1:+7878300 Msa0346980:CDS
CACAAGGAAGTGAAGAGGTT+GGG 0.480683 3_1:-7876533 None:intergenic
GTGGCTGATAACATTGTGAT+TGG 0.480704 3_1:+7880491 Msa0346980:exon
ACAGAGAAAGAGAGACAAAA+GGG 0.483634 3_1:-7876194 None:intergenic
AACGGGAAAGCAAAGGAGAA+AGG 0.483822 3_1:-7876337 None:intergenic
CCAGGCAAGGTAGACACAAC+AGG 0.485266 3_1:-7878365 None:intergenic
TCGAGGATATTGAAGTGATC+AGG 0.487794 3_1:-7877896 None:intergenic
ACTTAATAGGAGGCAGCAAA+AGG 0.487993 3_1:+7876983 Msa0346980:CDS
AAGAAGAAGGGTTTAGGAGG+GGG 0.489403 3_1:-7876588 None:intergenic
ATTTGTTACCAGGGTGATGC+AGG 0.492135 3_1:+7877970 Msa0346980:CDS
TTGTTGGCTATTCCTGGTGT+GGG 0.492293 3_1:+7877032 Msa0346980:CDS
AAAGAAGAATGAAAGAAGAA+GGG 0.498651 3_1:-7876600 None:intergenic
AAAACTACGTATTTGTTACC+AGG 0.500178 3_1:+7877960 Msa0346980:CDS
CATGATTACCACTTTGGGAG+GGG 0.501556 3_1:-7878532 None:intergenic
GAAGGTAACCTGTGGCTACC+AGG 0.503200 3_1:+7880406 Msa0346980:CDS
TTGCCTGGCCTTATTCCCGA+TGG 0.503417 3_1:+7878380 Msa0346980:CDS
GGAAGATGCCGAAGAGGAAG+AGG 0.503537 3_1:-7876931 None:intergenic
CTGAGATATATAAAACCATC+GGG 0.503584 3_1:-7878395 None:intergenic
AGTGTGGCGTGTTAGGGTTA+GGG 0.503961 3_1:-7876772 None:intergenic
AGGGCAATGTCATATATGTC+TGG 0.506658 3_1:+7880466 Msa0346980:CDS
GAGTATCTGCAGAGCTCTGT+TGG 0.508549 3_1:+7877629 Msa0346980:CDS
CAAACAACTCTACAAAGATA+AGG 0.510054 3_1:+7877109 Msa0346980:CDS
TTCAGAAAACTCGTTCAGAA+AGG 0.510465 3_1:+7877065 Msa0346980:CDS
GTAGTAGTAGTGGCGGGTGC+AGG 0.511213 3_1:-7876630 None:intergenic
TGAACCAATTGGCAAGTGGC+AGG 0.513776 3_1:+7877865 Msa0346980:CDS
TGCCGAAGAGGAAGAGGAAG+AGG 0.517191 3_1:-7876925 None:intergenic
GCGACTTACGTTCTGTGTTG+AGG 0.517675 3_1:+7877757 Msa0346980:CDS
TTGGGATGAAGATATACTAA+TGG 0.519523 3_1:+7880510 Msa0346980:three_prime_UTR
TTTGTTGGCTATTCCTGGTG+TGG 0.521990 3_1:+7877031 Msa0346980:CDS
GGCCACCCTTGGACTTCAGA+AGG 0.524399 3_1:+7880446 Msa0346980:CDS
ATTGGCAAGTGGCAGGATGT+TGG 0.525269 3_1:+7877872 Msa0346980:CDS
GCTTTCCACCTGGTAGCCAC+AGG 0.526799 3_1:-7880414 None:intergenic
TTTCATTGGCTATTCTCTGA+AGG 0.528274 3_1:-7877808 None:intergenic
ACGGGAAAGCAAAGGAGAAA+GGG 0.528583 3_1:-7876336 None:intergenic
AGGAAGAGAGAAGAAGAAGG+TGG 0.532736 3_1:+7878455 Msa0346980:CDS
CAGGAAAGAGAGTCTTCTGC+TGG 0.536413 3_1:+7877989 Msa0346980:CDS
TATCGAGAACAGCGCAGCCA+AGG 0.537815 3_1:+7876298 Msa0346980:five_prime_UTR
AGAAGAAGAAGTAGTAGTAG+TGG 0.537877 3_1:-7876640 None:intergenic
TTAGGTGCTACTAGACTACT+TGG 0.540120 3_1:+7880634 Msa0346980:three_prime_UTR
GAGGTAGCAGCACCTGTGGT+TGG 0.542702 3_1:-7880381 None:intergenic
AGAAGAAGTAGTAGTAGTGG+CGG 0.545454 3_1:-7876637 None:intergenic
TGGCGTGTTAGGGTTAGGGT+TGG 0.549804 3_1:-7876768 None:intergenic
AAATTCCTGGGACCCACACC+AGG 0.550512 3_1:-7877044 None:intergenic
AAACCATCGGGAATAAGGCC+AGG 0.553177 3_1:-7878383 None:intergenic
CATCTTTCAGACTTAATAGG+AGG 0.553857 3_1:+7876973 Msa0346980:CDS
CAAGGATATTGAAGCCAAGA+GGG 0.554039 3_1:+7878798 Msa0346980:CDS
TCCATGATTACCACTTTGGG+AGG 0.557575 3_1:-7878534 None:intergenic
CAGCGCAGCCAAGGGTACAC+AGG 0.559968 3_1:+7876307 Msa0346980:five_prime_UTR
GACCTTGACTGATGTGAAGT+TGG 0.563330 3_1:+7880583 Msa0346980:three_prime_UTR
TGGCTGATAACATTGTGATT+GGG 0.564256 3_1:+7880492 Msa0346980:exon
TTAAGGAAGAGAGAAGAAGA+AGG 0.564660 3_1:+7878452 Msa0346980:CDS
AAAGAGTGTTGATGAAGAAG+TGG 0.565992 3_1:+7877697 Msa0346980:CDS
TGGCAAATCTAGTGATCAGA+TGG 0.567752 3_1:+7877604 Msa0346980:CDS
GCACAAGGAAGTGAAGAGGT+TGG 0.571132 3_1:-7876534 None:intergenic
GGAGGTCGCGGAGATACTCT+AGG 0.573426 3_1:-7878484 None:intergenic
CCATGATTACCACTTTGGGA+GGG 0.576142 3_1:-7878533 None:intergenic
TAAAGAGTTGTCGACATGGA+GGG 0.578148 3_1:-7878579 None:intergenic
TCTGAGATATATAAAACCAT+CGG 0.581306 3_1:-7878396 None:intergenic
ATGTCATATATGTCTGGTAG+TGG 0.582072 3_1:+7880472 Msa0346980:CDS
AAAGAAGAAGGGTTTAGGAG+GGG 0.582496 3_1:-7876589 None:intergenic
CATTGCCCTTCTGAAGTCCA+AGG 0.584988 3_1:-7880452 None:intergenic
GCCACCCTTGGACTTCAGAA+GGG 0.586571 3_1:+7880447 Msa0346980:CDS
GAGGTGGTTCCTGAACCAAT+TGG 0.589076 3_1:+7877854 Msa0346980:CDS
AAAGAGTTGTCGACATGGAG+GGG 0.589208 3_1:-7878578 None:intergenic
GAAGAAGTAGTAGTAGTGGC+GGG 0.590829 3_1:-7876636 None:intergenic
GAAAGAAGAAGGGTTTAGGA+GGG 0.592426 3_1:-7876590 None:intergenic
AGCCTCTTCGATTGATGGAG+AGG 0.592683 3_1:+7878017 Msa0346980:CDS
TCCACGAAAAGCATGAGAGC+TGG 0.595770 3_1:+7878504 Msa0346980:CDS
ATCGGGAATAAGGCCAGGCA+AGG 0.595930 3_1:-7878378 None:intergenic
CTCTCTTTCCTGCATCACCC+TGG 0.596005 3_1:-7877978 None:intergenic
AGCCAATTGGATGAATGAGA+TGG 0.598931 3_1:+7878313 Msa0346980:CDS
CAGGTGCTGCTACCTCATGA+AGG 0.601758 3_1:+7880388 Msa0346980:CDS
CTCCTCTCCATCAATCGAAG+AGG 0.603846 3_1:-7878019 None:intergenic
GAATGTTTAAGAAGTAGCCA+TGG 0.606023 3_1:-7876819 None:intergenic
ATCGAGAACAGCGCAGCCAA+GGG 0.606776 3_1:+7876299 Msa0346980:five_prime_UTR
GTTGAGGGTAATATTAGTGT+TGG 0.608747 3_1:+7877773 Msa0346980:CDS
GTTTAAGAAGTAGCCATGGA+AGG 0.609586 3_1:-7876815 None:intergenic
CATGCATTCCAGCATTCAGA+AGG 0.612913 3_1:+7878646 Msa0346980:CDS
AGAAGAGGAAGATGCCGAAG+AGG 0.612915 3_1:-7876937 None:intergenic
CAGGTGGAAAGCCTTTCCCC+CGG 0.613517 3_1:+7880425 Msa0346980:CDS
TCATGAGGTAGCAGCACCTG+TGG 0.616247 3_1:-7880385 None:intergenic
TAAGAAGTAGCCATGGAAGG+TGG 0.617123 3_1:-7876812 None:intergenic
AAGTGGATGATAATTCCTCT+GGG 0.617994 3_1:+7877714 Msa0346980:CDS
TCACAGTCTAGAATCAATGC+AGG 0.618620 3_1:-7878757 None:intergenic
TACCAACTTCACATCAGTCA+AGG 0.621768 3_1:-7880585 None:intergenic
AAACTACGTATTTGTTACCA+GGG 0.623005 3_1:+7877961 Msa0346980:CDS
GTAAGTCGCTTCTTCTGCAT+AGG 0.624407 3_1:-7877743 None:intergenic
TGGTTATTCCCCTCCCAAAG+TGG 0.626744 3_1:+7878524 Msa0346980:CDS
CAGCAAGTTCTATCTGTCGA+AGG 0.626856 3_1:+7880340 Msa0346980:CDS
ATACACGGTCTCTTATATCA+GGG 0.627573 3_1:-7878604 None:intergenic
AACAGCACAAGGAAGTGAAG+AGG 0.634339 3_1:-7876538 None:intergenic
CACCCTCGAGATAAAATACA+CGG 0.637012 3_1:-7878619 None:intergenic
AAGTAGTTATACTTTCAGCA+TGG 0.639328 3_1:-7877667 None:intergenic
GCCCTTCTGAAGTCCAAGGG+TGG 0.642155 3_1:-7880448 None:intergenic
TGAAGTCCAAGGGTGGCCGG+GGG 0.643695 3_1:-7880441 None:intergenic
ATTGCCCTTCTGAAGTCCAA+GGG 0.645360 3_1:-7880451 None:intergenic
GCAAGGATATTGAAGCCAAG+AGG 0.646490 3_1:+7878797 Msa0346980:CDS
GGTGTAAAGAGTTGTCGACA+TGG 0.647270 3_1:-7878583 None:intergenic
ACCCAATATTGATTTCAGCA+AGG 0.647767 3_1:+7878780 Msa0346980:CDS
AGCCACAGGTTACCTTCATG+AGG 0.659085 3_1:-7880400 None:intergenic
TTCCTGAACCAATTGGCAAG+TGG 0.660138 3_1:+7877861 Msa0346980:CDS
ACTGCGTGATCTCGTCGAGG+TGG 0.663093 3_1:+7877838 Msa0346980:CDS
AAATAGCCAGAACCAACCAC+AGG 0.667625 3_1:+7880369 Msa0346980:CDS
AAGGAAGTGAAGAGGTTGGG+CGG 0.672128 3_1:-7876530 None:intergenic
GGGGTGGAAATAACAGCACA+AGG 0.681411 3_1:-7876549 None:intergenic
TCTGAATGCTGGAATGCATG+TGG 0.686716 3_1:-7878643 None:intergenic
GTAAAGAGTTGTCGACATGG+AGG 0.688565 3_1:-7878580 None:intergenic
GGAATAGCCAACAAATCAGG+AGG 0.689568 3_1:-7877023 None:intergenic
AAAACATGAACACATAAACA+AGG 0.693143 3_1:-7880535 None:intergenic
ACAGATTACTACAACAACAG+AGG 0.696495 3_1:+7876896 Msa0346980:CDS
TGAACTGCGTGATCTCGTCG+AGG 0.698431 3_1:+7877835 Msa0346980:CDS
CTGCATAGGCTGCTTCCCAG+AGG 0.699038 3_1:-7877729 None:intergenic
TACCTCATGAAGGTAACCTG+TGG 0.701825 3_1:+7880398 Msa0346980:CDS
AAGGTGTATGCATACCTCTG+TGG 0.702954 3_1:-7877935 None:intergenic
GGTAACCTGTGGCTACCAGG+TGG 0.705128 3_1:+7880409 Msa0346980:CDS
TAAGAAGCATTAGAATAACG+AGG 0.743544 3_1:-7876726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATATTAACAC+TGG + chr3_1:7879980-7879999 Msa0346980:intron 10.0%
!!! TTTGATTTTCTAATACAAAA+TGG + chr3_1:7877533-7877552 Msa0346980:intron 15.0%
!!! AATTACTTTTAATTACAAAC+AGG + chr3_1:7878732-7878751 Msa0346980:intron 15.0%
!!! ATTATGATTTTTATTATCCT+TGG + chr3_1:7878919-7878938 Msa0346980:intron 15.0%
!! AAAAGACAATTTACTTATTA+GGG - chr3_1:7880257-7880276 None:intergenic 15.0%
!! AAAAAGACAATTTACTTATT+AGG - chr3_1:7880258-7880277 None:intergenic 15.0%
!! ATTCTAATAAACCTCAAAAA+CGG - chr3_1:7876358-7876377 None:intergenic 20.0%
!! AAATGTACCAATATTACAAA+GGG - chr3_1:7877405-7877424 None:intergenic 20.0%
!! TAAATGTACCAATATTACAA+AGG - chr3_1:7877406-7877425 None:intergenic 20.0%
!! CTTTGTATTAGAAAATCAAA+TGG - chr3_1:7877500-7877519 None:intergenic 20.0%
!!! TTTGATTTTCTAATACAAAG+TGG + chr3_1:7877500-7877519 Msa0346980:intron 20.0%
!! TTGAAGAAAAAATGTTGTAT+TGG - chr3_1:7878137-7878156 None:intergenic 20.0%
!!! ATGTTTTGAGAGTTTAAAAA+AGG + chr3_1:7878231-7878250 Msa0346980:intron 20.0%
!! TCTGATTATTATATCTTTGT+TGG + chr3_1:7878944-7878963 Msa0346980:intron 20.0%
!! CTGATTATTATATCTTTGTT+GGG + chr3_1:7878945-7878964 Msa0346980:intron 20.0%
!!! TTTTGAATCTTTTGATTGTA+TGG + chr3_1:7879255-7879274 Msa0346980:intron 20.0%
!!! ATAAAATGGTGTTTTGATTT+GGG - chr3_1:7879491-7879510 None:intergenic 20.0%
!!! TTCTTTTAGTTGTAAATAGT+AGG + chr3_1:7879690-7879709 Msa0346980:intron 20.0%
!! AGCTAAAATTATTTACTTTC+AGG - chr3_1:7879898-7879917 None:intergenic 20.0%
!! TCTTTAATTAGTAAAGTTCT+TGG + chr3_1:7880146-7880165 Msa0346980:intron 20.0%
!!! ATGTTTAGTTTGATTACAAA+CGG + chr3_1:7880745-7880764 Msa0346980:three_prime_UTR 20.0%
! TTTCTCTGTGAATTTGAAAA+GGG + chr3_1:7876208-7876227 Msa0346980:five_prime_UTR 25.0%
! TTCTAATAAACCTCAAAAAC+GGG - chr3_1:7876357-7876376 None:intergenic 25.0%
! AAAGAAGAATGAAAGAAGAA+GGG - chr3_1:7876603-7876622 None:intergenic 25.0%
! TAAAGAAGAATGAAAGAAGA+AGG - chr3_1:7876604-7876623 None:intergenic 25.0%
!!! CTTTACTATCTTCTGTTTTT+GGG + chr3_1:7877183-7877202 Msa0346980:intron 25.0%
! GAAATTAAATGATGTCCTAA+GGG - chr3_1:7877268-7877287 None:intergenic 25.0%
! TGAAATTAAATGATGTCCTA+AGG - chr3_1:7877269-7877288 None:intergenic 25.0%
! ATTATAGCAAACAGTCATTT+GGG - chr3_1:7877464-7877483 None:intergenic 25.0%
! TATTATAGCAAACAGTCATT+TGG - chr3_1:7877465-7877484 None:intergenic 25.0%
!!! AACAAATACGTAGTTTTGAA+AGG - chr3_1:7877957-7877976 None:intergenic 25.0%
! CACACAAGAATATGAAAAAA+TGG - chr3_1:7878079-7878098 None:intergenic 25.0%
!! TCTGAGATATATAAAACCAT+CGG - chr3_1:7878399-7878418 None:intergenic 25.0%
! AAAATCGTAAAATCAGACAT+GGG - chr3_1:7878688-7878707 None:intergenic 25.0%
! AAAAATCGTAAAATCAGACA+TGG - chr3_1:7878689-7878708 None:intergenic 25.0%
! TTGTTAAAATTTACGTGACA+TGG + chr3_1:7878852-7878871 Msa0346980:intron 25.0%
! ATAAATCTTGAGTCCTTTAT+TGG + chr3_1:7879279-7879298 Msa0346980:intron 25.0%
! TGATACAAATAACTTCGTAT+GGG - chr3_1:7879317-7879336 None:intergenic 25.0%
! TTGATACAAATAACTTCGTA+TGG - chr3_1:7879318-7879337 None:intergenic 25.0%
! GAAGTTATTTGTATCAACTT+AGG + chr3_1:7879321-7879340 Msa0346980:intron 25.0%
!!! TAAAATGGTGTTTTGATTTG+GGG - chr3_1:7879490-7879509 None:intergenic 25.0%
!!! CATAAAATGGTGTTTTGATT+TGG - chr3_1:7879492-7879511 None:intergenic 25.0%
!! AGTTCACTGTTTTACTTTAA+TGG - chr3_1:7879539-7879558 None:intergenic 25.0%
! ATTAAAGTAAAACAGTGAAC+TGG + chr3_1:7879538-7879557 Msa0346980:intron 25.0%
! AGTCATCTTCTCATTATTTA+AGG + chr3_1:7879591-7879610 Msa0346980:intron 25.0%
! GTCATCTTCTCATTATTTAA+GGG + chr3_1:7879592-7879611 Msa0346980:intron 25.0%
! TCATCTTCTCATTATTTAAG+GGG + chr3_1:7879593-7879612 Msa0346980:intron 25.0%
!! AAAGATGTTTGACTTATAGA+TGG - chr3_1:7879746-7879765 None:intergenic 25.0%
! ACTTAAATCTCTTAAAGCAA+TGG - chr3_1:7879783-7879802 None:intergenic 25.0%
!!! ATTGCTTTAAGAGATTTAAG+TGG + chr3_1:7879782-7879801 Msa0346980:intron 25.0%
! TATTATTAGTCACACTGAAA+GGG - chr3_1:7879935-7879954 None:intergenic 25.0%
! TTATTATTAGTCACACTGAA+AGG - chr3_1:7879936-7879955 None:intergenic 25.0%
!! TAGTTTAACTTAACACATAG+TGG - chr3_1:7880221-7880240 None:intergenic 25.0%
! ACAATTTACTTATTAGGGAA+CGG - chr3_1:7880252-7880271 None:intergenic 25.0%
!!! TGTCTTTTTTGTTTTGTGTA+TGG + chr3_1:7880269-7880288 Msa0346980:intron 25.0%
! AAAACATGAACACATAAACA+AGG - chr3_1:7880538-7880557 None:intergenic 25.0%
!!! TGCATGTAAAGATTTTAACT+CGG + chr3_1:7880561-7880580 Msa0346980:three_prime_UTR 25.0%
! TATTTCTTTGGTTACAAAGA+TGG + chr3_1:7880661-7880680 Msa0346980:three_prime_UTR 25.0%
CTTTCTCTGTGAATTTGAAA+AGG + chr3_1:7876207-7876226 Msa0346980:five_prime_UTR 30.0%
!! TTTTTGAAGAGGGAATGAAA+GGG - chr3_1:7876682-7876701 None:intergenic 30.0%
!! ATTTTTGAAGAGGGAATGAA+AGG - chr3_1:7876683-7876702 None:intergenic 30.0%
!! TAAGAAGCATTAGAATAACG+AGG - chr3_1:7876729-7876748 None:intergenic 30.0%
!!! TTTTGGTGTTATTACTAGTG+TGG - chr3_1:7876791-7876810 None:intergenic 30.0%
! TAGTAATCTGTTGTTGTTCA+GGG - chr3_1:7876887-7876906 None:intergenic 30.0%
CTTCATCTTTCAGACTTAAT+AGG + chr3_1:7876970-7876989 Msa0346980:CDS 30.0%
CAAACAACTCTACAAAGATA+AGG + chr3_1:7877109-7877128 Msa0346980:CDS 30.0%
! GCTTTACTATCTTCTGTTTT+TGG + chr3_1:7877182-7877201 Msa0346980:intron 30.0%
CGTGTTAGTAATTTCATGAA+AGG + chr3_1:7877210-7877229 Msa0346980:intron 30.0%
ATTTCATGAAAGGACACATT+TGG + chr3_1:7877220-7877239 Msa0346980:intron 30.0%
TTTCATGAAAGGACACATTT+GGG + chr3_1:7877221-7877240 Msa0346980:intron 30.0%
TTCCTTAAACAATTCCCTTA+GGG + chr3_1:7877364-7877383 Msa0346980:intron 30.0%
!! AAAGTTTTGACCTTTGTGTT+GGG + chr3_1:7877571-7877590 Msa0346980:intron 30.0%
AAGTAGTTATACTTTCAGCA+TGG - chr3_1:7877670-7877689 None:intergenic 30.0%
! AAAACTACGTATTTGTTACC+AGG + chr3_1:7877960-7877979 Msa0346980:CDS 30.0%
! AAACTACGTATTTGTTACCA+GGG + chr3_1:7877961-7877980 Msa0346980:CDS 30.0%
! AATGTTGTATTGGCATGAAA+AGG - chr3_1:7878127-7878146 None:intergenic 30.0%
!!! CATTTTTTCTTCAAACGTGT+TGG + chr3_1:7878143-7878162 Msa0346980:intron 30.0%
ATTTATTTCCTTTCCCTGTT+TGG + chr3_1:7878179-7878198 Msa0346980:intron 30.0%
ATCTCAAATCAAACCAAACA+GGG - chr3_1:7878195-7878214 None:intergenic 30.0%
AATCTCAAATCAAACCAAAC+AGG - chr3_1:7878196-7878215 None:intergenic 30.0%
!! TGGTTTGATTTGAGATTAAC+AGG + chr3_1:7878199-7878218 Msa0346980:intron 30.0%
AATCTCACTGTGTTCAATAA+AGG + chr3_1:7878268-7878287 Msa0346980:intron 30.0%
AGATAAGCATTTATGACTCT+TGG + chr3_1:7878336-7878355 Msa0346980:CDS 30.0%
ATATAAAACCATCGGGAATA+AGG - chr3_1:7878391-7878410 None:intergenic 30.0%
CTGAGATATATAAAACCATC+GGG - chr3_1:7878398-7878417 None:intergenic 30.0%
TCCTTAACTTCATTCTTTGA+TGG - chr3_1:7878439-7878458 None:intergenic 30.0%
! TGGTAATCATGGAGTATTAT+CGG + chr3_1:7878544-7878563 Msa0346980:CDS 30.0%
!! CATTCAGAAGGTATCAAATT+TGG + chr3_1:7878658-7878677 Msa0346980:intron 30.0%
TCCTTGCTGAAATCAATATT+GGG - chr3_1:7878784-7878803 None:intergenic 30.0%
ATCCTTGCTGAAATCAATAT+TGG - chr3_1:7878785-7878804 None:intergenic 30.0%
GATATAATAATCAGACTCCA+AGG - chr3_1:7878939-7878958 None:intergenic 30.0%
TTATTATATCTTTGTTGGGC+TGG + chr3_1:7878949-7878968 Msa0346980:intron 30.0%
TATTATATCTTTGTTGGGCT+GGG + chr3_1:7878950-7878969 Msa0346980:intron 30.0%
TTACCAACTGAAAGATACAA+TGG - chr3_1:7879135-7879154 None:intergenic 30.0%
!!! AAAATGGTGTTTTGATTTGG+GGG - chr3_1:7879489-7879508 None:intergenic 30.0%
CAGATAGACGAATCATAAAA+TGG - chr3_1:7879505-7879524 None:intergenic 30.0%
CATCTTCTCATTATTTAAGG+GGG + chr3_1:7879594-7879613 Msa0346980:intron 30.0%
ATCTTCTCATTATTTAAGGG+GGG + chr3_1:7879595-7879614 Msa0346980:intron 30.0%
AGTATAGCAACCAAAAAAAG+AGG + chr3_1:7879715-7879734 Msa0346980:intron 30.0%
ACAGACTGTTTATGATATAC+TGG + chr3_1:7879845-7879864 Msa0346980:intron 30.0%
CAGACTGTTTATGATATACT+GGG + chr3_1:7879846-7879865 Msa0346980:intron 30.0%
ATTATTAGTCACACTGAAAG+GGG - chr3_1:7879934-7879953 None:intergenic 30.0%
AGTGTGACTAATAATAACAC+CGG + chr3_1:7879939-7879958 Msa0346980:intron 30.0%
!!! ATTTTTTTTGAAGGGTAGTC+CGG - chr3_1:7879961-7879980 None:intergenic 30.0%
!! AAACATAGAATTTGCTACCT+TGG - chr3_1:7880127-7880146 None:intergenic 30.0%
ATTCAAAAAACTCTGCAACT+TGG - chr3_1:7880309-7880328 None:intergenic 30.0%
TTGGGATGAAGATATACTAA+TGG + chr3_1:7880510-7880529 Msa0346980:three_prime_UTR 30.0%
!! GTGAAGTTGGTAGTTATTTA+TGG + chr3_1:7880596-7880615 Msa0346980:three_prime_UTR 30.0%
!! CTACTTGGTTTGTATTTCTT+TGG + chr3_1:7880649-7880668 Msa0346980:three_prime_UTR 30.0%
ACAGAGAAAGAGAGACAAAA+GGG - chr3_1:7876197-7876216 None:intergenic 35.0%
GAATGAAAGAAGAAGGGTTT+AGG - chr3_1:7876597-7876616 None:intergenic 35.0%
AGAAGAAGAAGTAGTAGTAG+TGG - chr3_1:7876643-7876662 None:intergenic 35.0%
!! AGGAGAGAGATTTTTGAAGA+GGG - chr3_1:7876692-7876711 None:intergenic 35.0%
!! AAGGAGAGAGATTTTTGAAG+AGG - chr3_1:7876693-7876712 None:intergenic 35.0%
GAATGTTTAAGAAGTAGCCA+TGG - chr3_1:7876822-7876841 None:intergenic 35.0%
! GTAGTAATCTGTTGTTGTTC+AGG - chr3_1:7876888-7876907 None:intergenic 35.0%
ACAGATTACTACAACAACAG+AGG + chr3_1:7876896-7876915 Msa0346980:CDS 35.0%
TGAAGTTGTGTTTGTAGAAG+AGG - chr3_1:7876955-7876974 None:intergenic 35.0%
CATCTTTCAGACTTAATAGG+AGG + chr3_1:7876973-7876992 Msa0346980:CDS 35.0%
!!! ACGAGTTTTCTGAAATTCCT+GGG - chr3_1:7877059-7877078 None:intergenic 35.0%
!!! AACGAGTTTTCTGAAATTCC+TGG - chr3_1:7877060-7877079 None:intergenic 35.0%
TTCAGAAAACTCGTTCAGAA+AGG + chr3_1:7877065-7877084 Msa0346980:CDS 35.0%
TTCATGAAAGGACACATTTG+GGG + chr3_1:7877222-7877241 Msa0346980:intron 35.0%
GTTCCTTAAACAATTCCCTT+AGG + chr3_1:7877363-7877382 Msa0346980:intron 35.0%
AGCACAACCCTTTGTAATAT+TGG + chr3_1:7877395-7877414 Msa0346980:intron 35.0%
GACACAACCTAACATATTCT+AGG + chr3_1:7877437-7877456 Msa0346980:intron 35.0%
TTTGGGTCCTAGAATATGTT+AGG - chr3_1:7877447-7877466 None:intergenic 35.0%
!! GAAAGTTTTGACCTTTGTGT+TGG + chr3_1:7877570-7877589 Msa0346980:intron 35.0%
!! AAAGAGTGTTGATGAAGAAG+TGG + chr3_1:7877697-7877716 Msa0346980:CDS 35.0%
AAGTGGATGATAATTCCTCT+GGG + chr3_1:7877714-7877733 Msa0346980:CDS 35.0%
GTTGAGGGTAATATTAGTGT+TGG + chr3_1:7877773-7877792 Msa0346980:CDS 35.0%
! TTTCATTGGCTATTCTCTGA+AGG - chr3_1:7877811-7877830 None:intergenic 35.0%
ACGCAGTTCAATAGTTTCAT+TGG - chr3_1:7877825-7877844 None:intergenic 35.0%
TCATATTCTTGTGTGTAGTG+AGG + chr3_1:7878084-7878103 Msa0346980:intron 35.0%
CATATTCTTGTGTGTAGTGA+GGG + chr3_1:7878085-7878104 Msa0346980:intron 35.0%
AAATCAAACCAAACAGGGAA+AGG - chr3_1:7878190-7878209 None:intergenic 35.0%
! ATTCTTTGATGGCAAGTATC+AGG - chr3_1:7878428-7878447 None:intergenic 35.0%
GCCATCAAAGAATGAAGTTA+AGG + chr3_1:7878435-7878454 Msa0346980:CDS 35.0%
TTAAGGAAGAGAGAAGAAGA+AGG + chr3_1:7878452-7878471 Msa0346980:CDS 35.0%
TACTCCATGATTACCACTTT+GGG - chr3_1:7878540-7878559 None:intergenic 35.0%
ATACTCCATGATTACCACTT+TGG - chr3_1:7878541-7878560 None:intergenic 35.0%
ATACACGGTCTCTTATATCA+GGG - chr3_1:7878607-7878626 None:intergenic 35.0%
AATACACGGTCTCTTATATC+AGG - chr3_1:7878608-7878627 None:intergenic 35.0%
ATTTGATACCTTCTGAATGC+TGG - chr3_1:7878657-7878676 None:intergenic 35.0%
!! ACCCAATATTGATTTCAGCA+AGG + chr3_1:7878780-7878799 Msa0346980:CDS 35.0%
ATAGTTATCTTACTCCCTCT+TGG - chr3_1:7878815-7878834 None:intergenic 35.0%
!! CAGACAAAAAAAGCATCTGA+TGG - chr3_1:7878892-7878911 None:intergenic 35.0%
TAATTCCTGCACCTTAAGTA+AGG + chr3_1:7879012-7879031 Msa0346980:intron 35.0%
ACATTGAGTGTCCTTACTTA+AGG - chr3_1:7879026-7879045 None:intergenic 35.0%
CTTCCATTGTATCTTTCAGT+TGG + chr3_1:7879129-7879148 Msa0346980:intron 35.0%
CTGGGAAAAACTGTAAATGT+TGG - chr3_1:7879160-7879179 None:intergenic 35.0%
! CAACATTTACAGTTTTTCCC+AGG + chr3_1:7879158-7879177 Msa0346980:intron 35.0%
! AGTTTTTCCCAGGACTTTTT+AGG + chr3_1:7879168-7879187 Msa0346980:intron 35.0%
TGAGTCCTTTATTGGAACTT+TGG + chr3_1:7879287-7879306 Msa0346980:intron 35.0%
GAGTCCTTTATTGGAACTTT+GGG + chr3_1:7879288-7879307 Msa0346980:intron 35.0%
TCTTTATCATCATGCTACAC+TGG + chr3_1:7879374-7879393 Msa0346980:intron 35.0%
! TGGTAATTGACTCAGATTGT+TGG + chr3_1:7879394-7879413 Msa0346980:intron 35.0%
!!! AAATGGTGTTTTGATTTGGG+GGG - chr3_1:7879488-7879507 None:intergenic 35.0%
TCTTCTCATTATTTAAGGGG+GGG + chr3_1:7879596-7879615 Msa0346980:intron 35.0%
!!! GATGGACTTACCTCTTTTTT+TGG - chr3_1:7879728-7879747 None:intergenic 35.0%
! GTCAAACATCTTTTTGCAGA+CGG + chr3_1:7879753-7879772 Msa0346980:intron 35.0%
! TCAAACATCTTTTTGCAGAC+GGG + chr3_1:7879754-7879773 Msa0346980:intron 35.0%
TGTTTATGATATACTGGGAG+TGG + chr3_1:7879851-7879870 Msa0346980:intron 35.0%
GGTAGTCAACAGATAACATT+TGG + chr3_1:7879872-7879891 Msa0346980:intron 35.0%
TTATTAGTCACACTGAAAGG+GGG - chr3_1:7879933-7879952 None:intergenic 35.0%
GTTCTCTGTGATTAAGTATC+TGG + chr3_1:7880092-7880111 Msa0346980:intron 35.0%
!! ACTTAACACATAGTGGACAA+AGG - chr3_1:7880214-7880233 None:intergenic 35.0%
ATTTACTTATTAGGGAACGG+TGG - chr3_1:7880249-7880268 None:intergenic 35.0%
ATGTCATATATGTCTGGTAG+TGG + chr3_1:7880472-7880491 Msa0346980:CDS 35.0%
TGGCTGATAACATTGTGATT+GGG + chr3_1:7880492-7880511 Msa0346980:exon 35.0%
TGGTTGTCAAATACTTCGTT+AGG + chr3_1:7880616-7880635 Msa0346980:three_prime_UTR 35.0%
CACAGAGAAAGAGAGACAAA+AGG - chr3_1:7876198-7876217 None:intergenic 40.0%
! GTGTATGTTTTGTCTCTGTC+TGG + chr3_1:7876230-7876249 Msa0346980:five_prime_UTR 40.0%
TAAAGGAAGAAAAAGAGGGG+TGG - chr3_1:7876568-7876587 None:intergenic 40.0%
GGGTAAAGGAAGAAAAAGAG+GGG - chr3_1:7876571-7876590 None:intergenic 40.0%
GGGGTAAAGGAAGAAAAAGA+GGG - chr3_1:7876572-7876591 None:intergenic 40.0%
AAAGAAGAAGGGTTTAGGAG+GGG - chr3_1:7876592-7876611 None:intergenic 40.0%
GAAAGAAGAAGGGTTTAGGA+GGG - chr3_1:7876593-7876612 None:intergenic 40.0%
TGAAAGAAGAAGGGTTTAGG+AGG - chr3_1:7876594-7876613 None:intergenic 40.0%
AGAAGAAGTAGTAGTAGTGG+CGG - chr3_1:7876640-7876659 None:intergenic 40.0%
ACGAGGAGAAGAAGAAGAAA+AGG - chr3_1:7876712-7876731 None:intergenic 40.0%
ATTACTAGTGTGGCGTGTTA+GGG - chr3_1:7876781-7876800 None:intergenic 40.0%
TATTACTAGTGTGGCGTGTT+AGG - chr3_1:7876782-7876801 None:intergenic 40.0%
GTTTAAGAAGTAGCCATGGA+AGG - chr3_1:7876818-7876837 None:intergenic 40.0%
ACTTAATAGGAGGCAGCAAA+AGG + chr3_1:7876983-7877002 Msa0346980:CDS 40.0%
! ATCTAGTCCTCCTGATTTGT+TGG + chr3_1:7877016-7877035 Msa0346980:CDS 40.0%
!! CTCGTTCAGAAAGGTATTCA+AGG + chr3_1:7877074-7877093 Msa0346980:CDS 40.0%
TCATGAAAGGACACATTTGG+GGG + chr3_1:7877223-7877242 Msa0346980:intron 40.0%
TGGCAAATCTAGTGATCAGA+TGG + chr3_1:7877604-7877623 Msa0346980:CDS 40.0%
TACTTTCAGCATGGTTCTTG+TGG - chr3_1:7877661-7877680 None:intergenic 40.0%
GAAGTGGATGATAATTCCTC+TGG + chr3_1:7877713-7877732 Msa0346980:CDS 40.0%
TCGAGGATATTGAAGTGATC+AGG - chr3_1:7877899-7877918 None:intergenic 40.0%
AGCCAATTGGATGAATGAGA+TGG + chr3_1:7878313-7878332 Msa0346980:CDS 40.0%
CTCCATCTCATTCATCCAAT+TGG - chr3_1:7878318-7878337 None:intergenic 40.0%
TAAAGAGTTGTCGACATGGA+GGG - chr3_1:7878582-7878601 None:intergenic 40.0%
! AGACCGTGTATTTTATCTCG+AGG + chr3_1:7878616-7878635 Msa0346980:CDS 40.0%
! GACCGTGTATTTTATCTCGA+GGG + chr3_1:7878617-7878636 Msa0346980:CDS 40.0%
CACCCTCGAGATAAAATACA+CGG - chr3_1:7878622-7878641 None:intergenic 40.0%
! TCACAGTCTAGAATCAATGC+AGG - chr3_1:7878760-7878779 None:intergenic 40.0%
CAAGGATATTGAAGCCAAGA+GGG + chr3_1:7878798-7878817 Msa0346980:CDS 40.0%
AAGTTCCATACTTCGCACTT+GGG - chr3_1:7878993-7879012 None:intergenic 40.0%
TAAGTTCCATACTTCGCACT+TGG - chr3_1:7878994-7879013 None:intergenic 40.0%
CTAGTCTCCTAAAAAGTCCT+GGG - chr3_1:7879178-7879197 None:intergenic 40.0%
TCTAGTCTCCTAAAAAGTCC+TGG - chr3_1:7879179-7879198 None:intergenic 40.0%
!! GGTTTTGTGATTGTGTAACC+TGG + chr3_1:7879222-7879241 Msa0346980:intron 40.0%
TTTGTGATTGTGTAACCTGG+TGG + chr3_1:7879225-7879244 Msa0346980:intron 40.0%
TTGTGATTGTGTAACCTGGT+GGG + chr3_1:7879226-7879245 Msa0346980:intron 40.0%
GAGTCCCAAAGTTCCAATAA+AGG - chr3_1:7879295-7879314 None:intergenic 40.0%
!!! AATGGTGTTTTGATTTGGGG+GGG - chr3_1:7879487-7879506 None:intergenic 40.0%
!! CATGTTTCGTGCTGGTTATT+AGG + chr3_1:7879628-7879647 Msa0346980:intron 40.0%
AGGGCAATGTCATATATGTC+TGG + chr3_1:7880466-7880485 Msa0346980:CDS 40.0%
GTGGCTGATAACATTGTGAT+TGG + chr3_1:7880491-7880510 Msa0346980:exon 40.0%
TACCAACTTCACATCAGTCA+AGG - chr3_1:7880588-7880607 None:intergenic 40.0%
!! TTAGGTGCTACTAGACTACT+TGG + chr3_1:7880634-7880653 Msa0346980:three_prime_UTR 40.0%
ACGGGAAAGCAAAGGAGAAA+GGG - chr3_1:7876339-7876358 None:intergenic 45.0%
AACGGGAAAGCAAAGGAGAA+AGG - chr3_1:7876340-7876359 None:intergenic 45.0%
CCTCAAAAACGGGAAAGCAA+AGG - chr3_1:7876347-7876366 None:intergenic 45.0%
!! CCTTTGCTTTCCCGTTTTTG+AGG + chr3_1:7876344-7876363 Msa0346980:five_prime_UTR 45.0%
CACAAGGAAGTGAAGAGGTT+GGG - chr3_1:7876536-7876555 None:intergenic 45.0%
AACAGCACAAGGAAGTGAAG+AGG - chr3_1:7876541-7876560 None:intergenic 45.0%
GGGGGTAAAGGAAGAAAAAG+AGG - chr3_1:7876573-7876592 None:intergenic 45.0%
AAGAAGAAGGGTTTAGGAGG+GGG - chr3_1:7876591-7876610 None:intergenic 45.0%
GAAGAAGTAGTAGTAGTGGC+GGG - chr3_1:7876639-7876658 None:intergenic 45.0%
ACACCAAAAACCACCTTCCA+TGG + chr3_1:7876802-7876821 Msa0346980:CDS 45.0%
! TAGCCATGGAAGGTGGTTTT+TGG - chr3_1:7876808-7876827 None:intergenic 45.0%
TAAGAAGTAGCCATGGAAGG+TGG - chr3_1:7876815-7876834 None:intergenic 45.0%
TTCCTCTTCCTCTTCCTCTT+CGG + chr3_1:7876923-7876942 Msa0346980:CDS 45.0%
GGAATAGCCAACAAATCAGG+AGG - chr3_1:7877026-7877045 None:intergenic 45.0%
CCAGGAATAGCCAACAAATC+AGG - chr3_1:7877029-7877048 None:intergenic 45.0%
!! CCTGATTTGTTGGCTATTCC+TGG + chr3_1:7877026-7877045 Msa0346980:CDS 45.0%
! TTTGTTGGCTATTCCTGGTG+TGG + chr3_1:7877031-7877050 Msa0346980:CDS 45.0%
! TTGTTGGCTATTCCTGGTGT+GGG + chr3_1:7877032-7877051 Msa0346980:CDS 45.0%
AGAGAGAGAGAGAAAGAGAG+AGG - chr3_1:7877148-7877167 None:intergenic 45.0%
GAATGCTAACAAGTGCCCTT+AGG + chr3_1:7877250-7877269 Msa0346980:intron 45.0%
CGCCCTAAGGGAATTGTTTA+AGG - chr3_1:7877369-7877388 None:intergenic 45.0%
ATGAACTGCACCCAACACAA+AGG - chr3_1:7877584-7877603 None:intergenic 45.0%
TTGTGTTGGGTGCAGTTCAT+TGG + chr3_1:7877584-7877603 Msa0346980:intron 45.0%
GTAAGTCGCTTCTTCTGCAT+AGG - chr3_1:7877746-7877765 None:intergenic 45.0%
CGACTTACGTTCTGTGTTGA+GGG + chr3_1:7877758-7877777 Msa0346980:CDS 45.0%
TTCCTGAACCAATTGGCAAG+TGG + chr3_1:7877861-7877880 Msa0346980:CDS 45.0%
! CTTTTTATGCTGAGCCACAG+AGG + chr3_1:7877921-7877940 Msa0346980:CDS 45.0%
AAGGTGTATGCATACCTCTG+TGG - chr3_1:7877938-7877957 None:intergenic 45.0%
! ATTTGTTACCAGGGTGATGC+AGG + chr3_1:7877970-7877989 Msa0346980:CDS 45.0%
CATCAAGCCTCTTCGATTGA+TGG + chr3_1:7878012-7878031 Msa0346980:CDS 45.0%
!!! AGAGGAGTGTTTTCAGTGAC+AGG + chr3_1:7878035-7878054 Msa0346980:CDS 45.0%
! GAGTGTTTTCAGTGACAGGA+TGG + chr3_1:7878039-7878058 Msa0346980:CDS 45.0%
GAGCTGTTCATGAAGCCAAT+TGG + chr3_1:7878300-7878319 Msa0346980:CDS 45.0%
AGGAAGAGAGAAGAAGAAGG+TGG + chr3_1:7878455-7878474 Msa0346980:CDS 45.0%
! CATGATTACCACTTTGGGAG+GGG - chr3_1:7878535-7878554 None:intergenic 45.0%
! CCATGATTACCACTTTGGGA+GGG - chr3_1:7878536-7878555 None:intergenic 45.0%
TCCATGATTACCACTTTGGG+AGG - chr3_1:7878537-7878556 None:intergenic 45.0%
AAAGAGTTGTCGACATGGAG+GGG - chr3_1:7878581-7878600 None:intergenic 45.0%
GTAAAGAGTTGTCGACATGG+AGG - chr3_1:7878583-7878602 None:intergenic 45.0%
GGTGTAAAGAGTTGTCGACA+TGG - chr3_1:7878586-7878605 None:intergenic 45.0%
TCTGAATGCTGGAATGCATG+TGG - chr3_1:7878646-7878665 None:intergenic 45.0%
CATGCATTCCAGCATTCAGA+AGG + chr3_1:7878646-7878665 Msa0346980:CDS 45.0%
GCAAGGATATTGAAGCCAAG+AGG + chr3_1:7878797-7878816 Msa0346980:CDS 45.0%
! ATATCTTTGTTGGGCTGGGT+TGG + chr3_1:7878954-7878973 Msa0346980:intron 45.0%
TATGTCCCAAGTGCGAAGTA+TGG + chr3_1:7878985-7879004 Msa0346980:intron 45.0%
AGTGTCCTTACTTAAGGTGC+AGG - chr3_1:7879020-7879039 None:intergenic 45.0%
ACCACAAATGCTAGCCATTG+CGG - chr3_1:7879071-7879090 None:intergenic 45.0%
AATGGCTAGCATTTGTGGTG+TGG + chr3_1:7879072-7879091 Msa0346980:intron 45.0%
TTTGTGGTGTGGTTCTCTTG+AGG + chr3_1:7879083-7879102 Msa0346980:intron 45.0%
! TATTGCAGAGCTAGTCTGTG+CGG + chr3_1:7879200-7879219 Msa0346980:intron 45.0%
ATTCAAAACCTGATCCCACC+AGG - chr3_1:7879243-7879262 None:intergenic 45.0%
!!! ATGGTGTTTTGATTTGGGGG+GGG - chr3_1:7879486-7879505 None:intergenic 45.0%
GTAAAGCTCATGTTTCGTGC+TGG + chr3_1:7879620-7879639 Msa0346980:intron 45.0%
GTATCTGGAAGTAGATGCCA+AGG + chr3_1:7880107-7880126 Msa0346980:intron 45.0%
CAGCAAGTTCTATCTGTCGA+AGG + chr3_1:7880340-7880359 Msa0346980:CDS 45.0%
AAATAGCCAGAACCAACCAC+AGG + chr3_1:7880369-7880388 Msa0346980:CDS 45.0%
TACCTCATGAAGGTAACCTG+TGG + chr3_1:7880398-7880417 Msa0346980:CDS 45.0%
!! ATTGCCCTTCTGAAGTCCAA+GGG - chr3_1:7880454-7880473 None:intergenic 45.0%
GACCTTGACTGATGTGAAGT+TGG + chr3_1:7880583-7880602 Msa0346980:three_prime_UTR 45.0%
!! TAATTTATTTATTAGTATTT+GGG - chr3_1:7876264-7876283 None:intergenic 5.0%
!! ATAATTTATTTATTAGTATT+TGG - chr3_1:7876265-7876284 None:intergenic 5.0%
!!! TTTATTTTATTTTTTTTGAA+GGG - chr3_1:7879969-7879988 None:intergenic 5.0%
!!! TTTTATTTTATTTTTTTTGA+AGG - chr3_1:7879970-7879989 None:intergenic 5.0%
! GGTTTTTGCCTGTGTACCCT+TGG - chr3_1:7876318-7876337 None:intergenic 50.0%
!!! TAACGTTGCGTCGCTTTTGG+AGG - chr3_1:7876430-7876449 None:intergenic 50.0%
!! CTGTAACGTTGCGTCGCTTT+TGG - chr3_1:7876433-7876452 None:intergenic 50.0%
CAAAAGCGACGCAACGTTAC+AGG + chr3_1:7876431-7876450 Msa0346980:five_prime_UTR 50.0%
AAGGAAGTGAAGAGGTTGGG+CGG - chr3_1:7876533-7876552 None:intergenic 50.0%
GCACAAGGAAGTGAAGAGGT+TGG - chr3_1:7876537-7876556 None:intergenic 50.0%
GGGGTGGAAATAACAGCACA+AGG - chr3_1:7876552-7876571 None:intergenic 50.0%
AAGGGTTTAGGAGGGGGTAA+AGG - chr3_1:7876585-7876604 None:intergenic 50.0%
AGTGTGGCGTGTTAGGGTTA+GGG - chr3_1:7876775-7876794 None:intergenic 50.0%
TAGTGTGGCGTGTTAGGGTT+AGG - chr3_1:7876776-7876795 None:intergenic 50.0%
AGAAGAGGAAGATGCCGAAG+AGG - chr3_1:7876940-7876959 None:intergenic 50.0%
TGAAAGGACACATTTGGGGG+TGG + chr3_1:7877226-7877245 Msa0346980:intron 50.0%
GAAAGGACACATTTGGGGGT+GGG + chr3_1:7877227-7877246 Msa0346980:intron 50.0%
AAAGGACACATTTGGGGGTG+GGG + chr3_1:7877228-7877247 Msa0346980:intron 50.0%
TGTGCTAACAAGCGCCCTAA+GGG - chr3_1:7877381-7877400 None:intergenic 50.0%
TTGTGCTAACAAGCGCCCTA+AGG - chr3_1:7877382-7877401 None:intergenic 50.0%
GAGTATCTGCAGAGCTCTGT+TGG + chr3_1:7877629-7877648 Msa0346980:CDS 50.0%
GCGACTTACGTTCTGTGTTG+AGG + chr3_1:7877757-7877776 Msa0346980:CDS 50.0%
GAGGTGGTTCCTGAACCAAT+TGG + chr3_1:7877854-7877873 Msa0346980:CDS 50.0%
! TGCCACTTGCCAATTGGTTC+AGG - chr3_1:7877866-7877885 None:intergenic 50.0%
TGAACCAATTGGCAAGTGGC+AGG + chr3_1:7877865-7877884 Msa0346980:CDS 50.0%
! ACATCCTGCCACTTGCCAAT+TGG - chr3_1:7877872-7877891 None:intergenic 50.0%
ATTGGCAAGTGGCAGGATGT+TGG + chr3_1:7877872-7877891 Msa0346980:CDS 50.0%
!! GCTCAGCATAAAAAGCGTCG+AGG - chr3_1:7877916-7877935 None:intergenic 50.0%
CAGGAAAGAGAGTCTTCTGC+TGG + chr3_1:7877989-7878008 Msa0346980:CDS 50.0%
AGCCTCTTCGATTGATGGAG+AGG + chr3_1:7878017-7878036 Msa0346980:CDS 50.0%
CTCCTCTCCATCAATCGAAG+AGG - chr3_1:7878022-7878041 None:intergenic 50.0%
! CTTGTGTGTAGTGAGGGTGT+TGG + chr3_1:7878091-7878110 Msa0346980:intron 50.0%
AAACCATCGGGAATAAGGCC+AGG - chr3_1:7878386-7878405 None:intergenic 50.0%
! AGCTCTCATGCTTTTCGTGG+AGG - chr3_1:7878505-7878524 None:intergenic 50.0%
! TCCACGAAAAGCATGAGAGC+TGG + chr3_1:7878504-7878523 Msa0346980:CDS 50.0%
! ACCAGCTCTCATGCTTTTCG+TGG - chr3_1:7878508-7878527 None:intergenic 50.0%
TGGTTATTCCCCTCCCAAAG+TGG + chr3_1:7878524-7878543 Msa0346980:CDS 50.0%
CCCTCCCAAAGTGGTAATCA+TGG + chr3_1:7878533-7878552 Msa0346980:CDS 50.0%
ACAAATGCTAGCCATTGCGG+AGG - chr3_1:7879068-7879087 None:intergenic 50.0%
TCCGCAATGGCTAGCATTTG+TGG + chr3_1:7879067-7879086 Msa0346980:intron 50.0%
TGGTGTGGTTCTCTTGAGGT+TGG + chr3_1:7879087-7879106 Msa0346980:intron 50.0%
! ATTGCAGAGCTAGTCTGTGC+GGG + chr3_1:7879201-7879220 Msa0346980:intron 50.0%
TTGTGTAACCTGGTGGGATC+AGG + chr3_1:7879232-7879251 Msa0346980:intron 50.0%
!!! TGGTGTTTTGATTTGGGGGG+GGG - chr3_1:7879485-7879504 None:intergenic 50.0%
AGCCACAGGTTACCTTCATG+AGG - chr3_1:7880403-7880422 None:intergenic 50.0%
!! CATTGCCCTTCTGAAGTCCA+AGG - chr3_1:7880455-7880474 None:intergenic 50.0%
TATCGAGAACAGCGCAGCCA+AGG + chr3_1:7876298-7876317 Msa0346980:five_prime_UTR 55.0%
ATCGAGAACAGCGCAGCCAA+GGG + chr3_1:7876299-7876318 Msa0346980:five_prime_UTR 55.0%
TGGCGTGTTAGGGTTAGGGT+TGG - chr3_1:7876771-7876790 None:intergenic 55.0%
TGCCGAAGAGGAAGAGGAAG+AGG - chr3_1:7876928-7876947 None:intergenic 55.0%
GGAAGATGCCGAAGAGGAAG+AGG - chr3_1:7876934-7876953 None:intergenic 55.0%
AAATTCCTGGGACCCACACC+AGG - chr3_1:7877047-7877066 None:intergenic 55.0%
TGAACTGCGTGATCTCGTCG+AGG + chr3_1:7877835-7877854 Msa0346980:CDS 55.0%
CTCTCTTTCCTGCATCACCC+TGG - chr3_1:7877981-7878000 None:intergenic 55.0%
CCAGGCAAGGTAGACACAAC+AGG - chr3_1:7878368-7878387 None:intergenic 55.0%
CCTGTTGTGTCTACCTTGCC+TGG + chr3_1:7878365-7878384 Msa0346980:CDS 55.0%
ATCGGGAATAAGGCCAGGCA+AGG - chr3_1:7878381-7878400 None:intergenic 55.0%
!! TTGCCTGGCCTTATTCCCGA+TGG + chr3_1:7878380-7878399 Msa0346980:CDS 55.0%
! CATGCTTTTCGTGGAGGTCG+CGG - chr3_1:7878499-7878518 None:intergenic 55.0%
AACACCACAGCTAGCTGCTG+TGG - chr3_1:7879355-7879374 None:intergenic 55.0%
!!! GTGTTTTGATTTGGGGGGGG+GGG - chr3_1:7879483-7879502 None:intergenic 55.0%
!!! GGTGTTTTGATTTGGGGGGG+GGG - chr3_1:7879484-7879503 None:intergenic 55.0%
TCATGAGGTAGCAGCACCTG+TGG - chr3_1:7880388-7880407 None:intergenic 55.0%
!! CAGGTGCTGCTACCTCATGA+AGG + chr3_1:7880388-7880407 Msa0346980:CDS 55.0%
GAAGGTAACCTGTGGCTACC+AGG + chr3_1:7880406-7880425 Msa0346980:CDS 55.0%
!! TTCTGAAGTCCAAGGGTGGC+CGG - chr3_1:7880447-7880466 None:intergenic 55.0%
GCCACCCTTGGACTTCAGAA+GGG + chr3_1:7880447-7880466 Msa0346980:CDS 55.0%
!!! TGCGTCGCTTTTGGAGGTGG+CGG - chr3_1:7876424-7876443 None:intergenic 60.0%
!!! CGTTGCGTCGCTTTTGGAGG+TGG - chr3_1:7876427-7876446 None:intergenic 60.0%
GTGAAGAGGTTGGGCGGTGA+AGG - chr3_1:7876527-7876546 None:intergenic 60.0%
!! GTAGTAGTAGTGGCGGGTGC+AGG - chr3_1:7876633-7876652 None:intergenic 60.0%
CTATTCCTGGTGTGGGTCCC+AGG + chr3_1:7877039-7877058 Msa0346980:CDS 60.0%
CTGCATAGGCTGCTTCCCAG+AGG - chr3_1:7877732-7877751 None:intergenic 60.0%
ACTGCGTGATCTCGTCGAGG+TGG + chr3_1:7877838-7877857 Msa0346980:CDS 60.0%
GGAGGTCGCGGAGATACTCT+AGG - chr3_1:7878487-7878506 None:intergenic 60.0%
CTTGAGCTCTGCCTCCGCAA+TGG + chr3_1:7879054-7879073 Msa0346980:intron 60.0%
! GCAGCACCTGTGGTTGGTTC+TGG - chr3_1:7880378-7880397 None:intergenic 60.0%
GAGGTAGCAGCACCTGTGGT+TGG - chr3_1:7880384-7880403 None:intergenic 60.0%
GGTAACCTGTGGCTACCAGG+TGG + chr3_1:7880409-7880428 Msa0346980:CDS 60.0%
GCTTTCCACCTGGTAGCCAC+AGG - chr3_1:7880417-7880436 None:intergenic 60.0%
CAGGTGGAAAGCCTTTCCCC+CGG + chr3_1:7880425-7880444 Msa0346980:CDS 60.0%
! TCTGAAGTCCAAGGGTGGCC+GGG - chr3_1:7880446-7880465 None:intergenic 60.0%
GGCCACCCTTGGACTTCAGA+AGG + chr3_1:7880446-7880465 Msa0346980:CDS 60.0%
!! GCCCTTCTGAAGTCCAAGGG+TGG - chr3_1:7880451-7880470 None:intergenic 60.0%
! CAGCGCAGCCAAGGGTACAC+AGG + chr3_1:7876307-7876326 Msa0346980:five_prime_UTR 65.0%
CCACAGCTAGCTGCTGTGGC+AGG - chr3_1:7879351-7879370 None:intergenic 65.0%
CCTGCCACAGCAGCTAGCTG+TGG + chr3_1:7879348-7879367 Msa0346980:intron 65.0%
CGGGGGAAAGGCTTTCCACC+TGG - chr3_1:7880427-7880446 None:intergenic 65.0%
TGAAGTCCAAGGGTGGCCGG+GGG - chr3_1:7880444-7880463 None:intergenic 65.0%
CTGAAGTCCAAGGGTGGCCG+GGG - chr3_1:7880445-7880464 None:intergenic 65.0%
TCCAAGGGTGGCCGGGGGAA+AGG - chr3_1:7880439-7880458 None:intergenic 70.0%
GCCTTTCCCCCGGCCACCCT+TGG + chr3_1:7880435-7880454 Msa0346980:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 7876182 7880768 7876182 ID=Msa0346980;Name=Msa0346980
chr3_1 mRNA 7876182 7880768 7876182 ID=Msa0346980-mRNA-1;Parent=Msa0346980;Name=Msa0346980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=331|1|1|1|1|1|5|270|575
chr3_1 exon 7876182 7877130 7876182 ID=Msa0346980-mRNA-1:exon:2182;Parent=Msa0346980-mRNA-1
chr3_1 exon 7877599 7878060 7877599 ID=Msa0346980-mRNA-1:exon:2183;Parent=Msa0346980-mRNA-1
chr3_1 exon 7878290 7878667 7878290 ID=Msa0346980-mRNA-1:exon:2184;Parent=Msa0346980-mRNA-1
chr3_1 exon 7878754 7878821 7878754 ID=Msa0346980-mRNA-1:exon:2185;Parent=Msa0346980-mRNA-1
chr3_1 exon 7880297 7880768 7880297 ID=Msa0346980-mRNA-1:exon:2186;Parent=Msa0346980-mRNA-1
chr3_1 five_prime_UTR 7876182 7876512 7876182 ID=Msa0346980-mRNA-1:five_prime_utr;Parent=Msa0346980-mRNA-1
chr3_1 CDS 7876513 7877130 7876513 ID=Msa0346980-mRNA-1:cds;Parent=Msa0346980-mRNA-1
chr3_1 CDS 7877599 7878060 7877599 ID=Msa0346980-mRNA-1:cds;Parent=Msa0346980-mRNA-1
chr3_1 CDS 7878290 7878667 7878290 ID=Msa0346980-mRNA-1:cds;Parent=Msa0346980-mRNA-1
chr3_1 CDS 7878754 7878821 7878754 ID=Msa0346980-mRNA-1:cds;Parent=Msa0346980-mRNA-1
chr3_1 CDS 7880297 7880498 7880297 ID=Msa0346980-mRNA-1:cds;Parent=Msa0346980-mRNA-1
chr3_1 three_prime_UTR 7880499 7880768 7880499 ID=Msa0346980-mRNA-1:three_prime_utr;Parent=Msa0346980-mRNA-1
Gene Sequence

>Msa0346980

ATGCATAAACTCCTTCACCGCCCAACCTCTTCACTTCCTTGTGCTGTTATTTCCACCCCTCTTTTTCTTCCTTTACCCCCTCCTAAACCCTTCTTCTTTCATTCTTCTTTAACAATGCCTGCACCCGCCACTACTACTACTTCTTCTTCTTCTTCTTCTTCTTCTGCCCTTTCATTCCCTCTTCAAAAATCTCTCTCCTTTTCTTCTTCTTCTCCTCGTTATTCTAATGCTTCTTATGTTCGCACATGTTTTTGTCCAACCCTAACCCTAACACGCCACACTAGTAATAACACCAAAAACCACCTTCCATGGCTACTTCTTAAACATTCTCAACATTCAAATGCTACTTCACACTCTTCTTTTCATAATAACCCTGAACAACAACAGATTACTACAACAACAGAGGATGATTCCTCTTCCTCTTCCTCTTCGGCATCTTCCTCTTCTACAAACACAACTTCATCTTTCAGACTTAATAGGAGGCAGCAAAAGGCAGAATCATCATCTAGTCCTCCTGATTTGTTGGCTATTCCTGGTGTGGGTCCCAGGAATTTCAGAAAACTCGTTCAGAAAGGTATTCAAGGTGTTGCTCAACTCAAACAACTCTACAAAGATAAGTTCATTGGCAAATCTAGTGATCAGATGGTTGAGTATCTGCAGAGCTCTGTTGGAATTATCCACAAGAACCATGCTGAAAGTATAACTACTTTCATTAAAAAGAGTGTTGATGAAGAAGTGGATGATAATTCCTCTGGGAAGCAGCCTATGCAGAAGAAGCGACTTACGTTCTGTGTTGAGGGTAATATTAGTGTTGGCAAGACTACTTTCCTTCAGAGAATAGCCAATGAAACTATTGAACTGCGTGATCTCGTCGAGGTGGTTCCTGAACCAATTGGCAAGTGGCAGGATGTTGGACCTGATCACTTCAATATCCTCGACGCTTTTTATGCTGAGCCACAGAGGTATGCATACACCTTTCAAAACTACGTATTTGTTACCAGGGTGATGCAGGAAAGAGAGTCTTCTGCTGGCATCAAGCCTCTTCGATTGATGGAGAGGAGTGTTTTCAGTGACAGGATGGTTTTTGTACGAGCTGTTCATGAAGCCAATTGGATGAATGAGATGGAGATAAGCATTTATGACTCTTGGTTTGATCCTGTTGTGTCTACCTTGCCTGGCCTTATTCCCGATGGTTTTATATATCTCAGAGCAAGTCCTGATACTTGCCATCAAAGAATGAAGTTAAGGAAGAGAGAAGAAGAAGGTGGAGTCAGCCTAGAGTATCTCCGCGACCTCCACGAAAAGCATGAGAGCTGGTTATTCCCCTCCCAAAGTGGTAATCATGGAGTATTATCGGTCAATAAGCTTCCCCTCCATGTCGACAACTCTTTACACCCTGATATAAGAGACCGTGTATTTTATCTCGAGGGTGACCACATGCATTCCAGCATTCAGAAGGTTCCTGCATTGATTCTAGACTGTGAACCCAATATTGATTTCAGCAAGGATATTGAAGCCAAGAGGGAATATGCGCGCCAAGTTGCAGAGTTTTTTGAATTTGTTAAGAAACAGCAAGTTCTATCTGTCGAAGGTGAGAAAAATAGCCAGAACCAACCACAGGTGCTGCTACCTCATGAAGGTAACCTGTGGCTACCAGGTGGAAAGCCTTTCCCCCGGCCACCCTTGGACTTCAGAAGGGCAATGTCATATATGTCTGGTAGTGGCTGA
Protein sequence

>Msa0346980

MHKLLHRPTSSLPCAVISTPLFLPLPPPKPFFFHSSLTMPAPATTTTSSSSSSSSALSFPLQKSLSFSSSSPRYSNASYVRTCFCPTLTLTRHTSNNTKNHLPWLLLKHSQHSNATSHSSFHNNPEQQQITTTTEDDSSSSSSSASSSSTNTTSSFRLNRRQQKAESSSSPPDLLAIPGVGPRNFRKLVQKGIQGVAQLKQLYKDKFIGKSSDQMVEYLQSSVGIIHKNHAESITTFIKKSVDEEVDDNSSGKQPMQKKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEVVPEPIGKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSAGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSTLPGLIPDGFIYLRASPDTCHQRMKLRKREEEGGVSLEYLRDLHEKHESWLFPSQSGNHGVLSVNKLPLHVDNSLHPDIRDRVFYLEGDHMHSSIQKVPALILDCEPNIDFSKDIEAKREYARQVAEFFEFVKKQQVLSVEGEKNSQNQPQVLLPHEGNLWLPGGKPFPRPPLDFRRAMSYMSGSG*