AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392210 MtrunA17_Chr3g0077331 94.286 525 19 5 55 574 65 583 0.0 953
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392210 AT1G72040.1 60.997 582 190 13 4 568 15 576 0.0 659

Find 174 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTATTTATTAGTATT+TGG 0.110010 3_2:+5187064 None:intergenic
ATCCTTGCTGAAATCAATAT+TGG 0.197353 3_2:+5184547 None:intergenic
CTGTAACGTTGCGTCGCTTT+TGG 0.214302 3_2:+5186896 None:intergenic
CCTGATTTGTTGGCTATTCC+TGG 0.217222 3_2:-5186303 Msa0392210:CDS
CTACTTGGTTTGTATTTCTT+TGG 0.242702 3_2:-5182680 Msa0392210:three_prime_UTR
TATTACTAGTGTGGCGTGTT+AGG 0.243446 3_2:+5186550 None:intergenic
GTAAAGTTGGTAGTTATTTA+TGG 0.253552 3_2:-5182733 Msa0392210:three_prime_UTR
CTTCATCTTTCAGACTTAAT+AGG 0.255349 3_2:-5186359 Msa0392210:CDS
TAATTTATTTATTAGTATTT+GGG 0.272393 3_2:+5187065 None:intergenic
GTAGTAATCTGTTGTTGTTC+AGG 0.276506 3_2:+5186444 None:intergenic
ATATAAAACCATCGGGAATA+AGG 0.284820 3_2:+5184941 None:intergenic
CAAAAGCGACGCAACGTTAC+AGG 0.285114 3_2:-5186895 Msa0392210:five_prime_UTR
TCCTTAACTTCATTCTTTGA+TGG 0.286569 3_2:+5184893 None:intergenic
TAGTGTGGCGTGTTAGGGTT+AGG 0.287620 3_2:+5186556 None:intergenic
ATTCTTTGATGGCAAGTATC+AGG 0.291458 3_2:+5184904 None:intergenic
AATACACGGTCTCTTATATC+AGG 0.292967 3_2:+5184724 None:intergenic
GCAGCACCTGTGGTTGGTTC+TGG 0.301226 3_2:+5182954 None:intergenic
ATCTAGTCCTCCTGATTTGT+TGG 0.334574 3_2:-5186313 Msa0392210:CDS
TGCCACTTGCCAATTGGTTC+AGG 0.335895 3_2:+5185466 None:intergenic
CTTTCTCTGTGAATTTGAAA+AGG 0.346959 3_2:-5187123 Msa0392210:five_prime_UTR
CTCCATCTCATTCATCCAAT+TGG 0.351738 3_2:+5185014 None:intergenic
CTATTCCTGGTGTGGGTCCC+AGG 0.363835 3_2:-5186290 Msa0392210:CDS
TTCTGAAGTCCAAGGGTGGC+CGG 0.369193 3_2:+5182885 None:intergenic
ACGCAGTTCAATAGTTTCAT+TGG 0.370500 3_2:+5185507 None:intergenic
GAATGAAAGAAGAAGGGTTT+AGG 0.370611 3_2:+5186732 None:intergenic
CATCAAGCCTCTTCGATTGA+TGG 0.372708 3_2:-5185317 Msa0392210:CDS
TACTCCATGATTACCACTTT+GGG 0.385460 3_2:+5184792 None:intergenic
TATTTCTTTGGTTACAAAGA+TGG 0.388884 3_2:-5182668 Msa0392210:three_prime_UTR
ACGAGGAGAAGAAGAAGAAA+AGG 0.390707 3_2:+5186620 None:intergenic
TAGTAATCTGTTGTTGTTCA+GGG 0.394332 3_2:+5186445 None:intergenic
TTCCTCTTCCTCTTCCTCTT+CGG 0.395596 3_2:-5186406 Msa0392210:CDS
CCTGTTGTGTCTACCTTGCC+TGG 0.402035 3_2:-5184964 Msa0392210:CDS
GCCATCAAAGAATGAAGTTA+AGG 0.403313 3_2:-5184894 Msa0392210:CDS
TCCTTGCTGAAATCAATATT+GGG 0.404770 3_2:+5184548 None:intergenic
TCTGAAGTCCAAGGGTGGCC+GGG 0.405588 3_2:+5182886 None:intergenic
TGAAGTTGTGTTTGTAGAAG+AGG 0.408467 3_2:+5186377 None:intergenic
GTGAAGAGGTTGGGCGGTGA+AGG 0.412419 3_2:+5186802 None:intergenic
ATTACTAGTGTGGCGTGTTA+GGG 0.417789 3_2:+5186551 None:intergenic
TAAAGAAGAATGAAAGAAGA+AGG 0.420561 3_2:+5186725 None:intergenic
AGATAAGCATTTATGACTCT+TGG 0.422063 3_2:-5184993 Msa0392210:CDS
TGGTTGTCAAATACTTCGTT+AGG 0.422519 3_2:-5182713 Msa0392210:three_prime_UTR
TACTTTCAGCATGGTTCTTG+TGG 0.426754 3_2:+5185671 None:intergenic
CTGAAGTCCAAGGGTGGCCG+GGG 0.427190 3_2:+5182887 None:intergenic
TTTCTCTGTGAATTTGAAAA+GGG 0.427497 3_2:-5187122 Msa0392210:five_prime_UTR
TGGTAATCATGGAGTATTAT+CGG 0.432768 3_2:-5184785 Msa0392210:CDS
ATTTGATACCTTCTGAATGC+TGG 0.433730 3_2:+5184675 None:intergenic
ACATCCTGCCACTTGCCAAT+TGG 0.441088 3_2:+5185460 None:intergenic
ATAGTTATCTTACTCCCTCT+TGG 0.449688 3_2:+5184517 None:intergenic
GAAGTGGATGATAATTCCTC+TGG 0.451397 3_2:-5185616 Msa0392210:CDS
CTCGTTCAGAAAGGTATTCA+AGG 0.453440 3_2:-5186255 Msa0392210:CDS
CCCTCCCAAAGTGGTAATCA+TGG 0.459472 3_2:-5184796 Msa0392210:CDS
CCAGGAATAGCCAACAAATC+AGG 0.460862 3_2:+5186303 None:intergenic
TTGTGTTGGGTGCAGTTCAT+TGG 0.461411 3_2:-5185745 Msa0392210:intron
ATACTCCATGATTACCACTT+TGG 0.465554 3_2:+5184791 None:intergenic
ATGTTTAGTTTGATTACAAA+CGG 0.469477 3_2:-5182584 Msa0392210:three_prime_UTR
TGAAAGAAGAAGGGTTTAGG+AGG 0.471130 3_2:+5186735 None:intergenic
CGACTTACGTTCTGTGTTGA+GGG 0.471827 3_2:-5185571 Msa0392210:CDS
CACAGAGAAAGAGAGACAAA+AGG 0.473624 3_2:+5187135 None:intergenic
GAGCTGTTCATGAAGCCAAT+TGG 0.476172 3_2:-5185029 Msa0392210:CDS
CACAAGGAAGTGAAGAGGTT+GGG 0.480683 3_2:+5186793 None:intergenic
GTGGCTGATAACATTGTGAT+TGG 0.480704 3_2:-5182838 Msa0392210:exon
ACAGAGAAAGAGAGACAAAA+GGG 0.483634 3_2:+5187136 None:intergenic
AACGGGAAAGCAAAGGAGAA+AGG 0.483822 3_2:+5186989 None:intergenic
CCAGGCAAGGTAGACACAAC+AGG 0.485266 3_2:+5184964 None:intergenic
TCGAGGATATTGAAGTGATC+AGG 0.487794 3_2:+5185433 None:intergenic
ACTTAATAGGAGGCAGCAAA+AGG 0.487993 3_2:-5186346 Msa0392210:CDS
AAGAAGAAGGGTTTAGGAGG+GGG 0.489403 3_2:+5186738 None:intergenic
ATTTGTTACCAGGGTGATGC+AGG 0.492135 3_2:-5185359 Msa0392210:CDS
TTGTTGGCTATTCCTGGTGT+GGG 0.492293 3_2:-5186297 Msa0392210:CDS
AAAGAAGAATGAAAGAAGAA+GGG 0.498651 3_2:+5186726 None:intergenic
AAAACTACGTATTTGTTACC+AGG 0.500178 3_2:-5185369 Msa0392210:CDS
CATGATTACCACTTTGGGAG+GGG 0.501556 3_2:+5184797 None:intergenic
GAAGGTAACCTGTGGCTACC+AGG 0.503200 3_2:-5182923 Msa0392210:CDS
TTGCCTGGCCTTATTCCCGA+TGG 0.503417 3_2:-5184949 Msa0392210:CDS
GGAAGATGCCGAAGAGGAAG+AGG 0.503537 3_2:+5186398 None:intergenic
CTGAGATATATAAAACCATC+GGG 0.503584 3_2:+5184934 None:intergenic
AGTGTGGCGTGTTAGGGTTA+GGG 0.503961 3_2:+5186557 None:intergenic
AGGGCAATGTCATATATGTC+TGG 0.506658 3_2:-5182863 Msa0392210:CDS
GAGTATCTGCAGAGCTCTGT+TGG 0.508549 3_2:-5185700 Msa0392210:CDS
CAAACAACTCTACAAAGATA+AGG 0.510054 3_2:-5186220 Msa0392210:intron
TTCAGAAAACTCGTTCAGAA+AGG 0.510465 3_2:-5186264 Msa0392210:CDS
GTAGTAGTAGTGGCGGGTGC+AGG 0.511213 3_2:+5186696 None:intergenic
TGAACCAATTGGCAAGTGGC+AGG 0.513776 3_2:-5185464 Msa0392210:CDS
TGCCGAAGAGGAAGAGGAAG+AGG 0.517191 3_2:+5186404 None:intergenic
GCGACTTACGTTCTGTGTTG+AGG 0.517675 3_2:-5185572 Msa0392210:CDS
TTGGGATGAAGATATACTAA+TGG 0.519523 3_2:-5182819 Msa0392210:three_prime_UTR
TTTGTTGGCTATTCCTGGTG+TGG 0.521990 3_2:-5186298 Msa0392210:CDS
GGCCACCCTTGGACTTCAGA+AGG 0.524399 3_2:-5182883 Msa0392210:CDS
ATTGGCAAGTGGCAGGATGT+TGG 0.525269 3_2:-5185457 Msa0392210:CDS
GCTTTCCACCTGGTAGCCAC+AGG 0.526799 3_2:+5182915 None:intergenic
TTTCATTGGCTATTCTCTGA+AGG 0.528274 3_2:+5185521 None:intergenic
ACGGGAAAGCAAAGGAGAAA+GGG 0.528583 3_2:+5186990 None:intergenic
AGGAAGAGAGAAGAAGAAGG+TGG 0.532736 3_2:-5184874 Msa0392210:CDS
GACCTTGACTGATGTAAAGT+TGG 0.534462 3_2:-5182746 Msa0392210:three_prime_UTR
CAGGAAAGAGAGTCTTCTGC+TGG 0.536413 3_2:-5185340 Msa0392210:CDS
TATCGAGAACAGCGCAGCCA+AGG 0.537815 3_2:-5187028 Msa0392210:five_prime_UTR
AGAAGAAGAAGTAGTAGTAG+TGG 0.537877 3_2:+5186686 None:intergenic
TTAGGTGCTACTAGACTACT+TGG 0.540120 3_2:-5182695 Msa0392210:three_prime_UTR
GAGGTAGCAGCACCTGTGGT+TGG 0.542702 3_2:+5182948 None:intergenic
AGAAGAAGTAGTAGTAGTGG+CGG 0.545454 3_2:+5186689 None:intergenic
TGGCGTGTTAGGGTTAGGGT+TGG 0.549804 3_2:+5186561 None:intergenic
AAATTCCTGGGACCCACACC+AGG 0.550512 3_2:+5186285 None:intergenic
AAACCATCGGGAATAAGGCC+AGG 0.553177 3_2:+5184946 None:intergenic
CATCTTTCAGACTTAATAGG+AGG 0.553857 3_2:-5186356 Msa0392210:CDS
CAAGGATATTGAAGCCAAGA+GGG 0.554039 3_2:-5184531 Msa0392210:CDS
TCCATGATTACCACTTTGGG+AGG 0.557575 3_2:+5184795 None:intergenic
CAGCGCAGCCAAGGGTACAC+AGG 0.559968 3_2:-5187019 Msa0392210:five_prime_UTR
TGGCTGATAACATTGTGATT+GGG 0.564256 3_2:-5182837 Msa0392210:exon
TTAAGGAAGAGAGAAGAAGA+AGG 0.564660 3_2:-5184877 Msa0392210:CDS
AAAGAGTGTTGATGAAGAAG+TGG 0.565992 3_2:-5185632 Msa0392210:CDS
TGGCAAATCTAGTGATCAGA+TGG 0.567752 3_2:-5185725 Msa0392210:CDS
GCACAAGGAAGTGAAGAGGT+TGG 0.571132 3_2:+5186792 None:intergenic
GGAGGTCGCGGAGATACTCT+AGG 0.573426 3_2:+5184845 None:intergenic
CCATGATTACCACTTTGGGA+GGG 0.576142 3_2:+5184796 None:intergenic
TAAAGAGTTGTCGACATGGA+GGG 0.578148 3_2:+5184750 None:intergenic
TCTGAGATATATAAAACCAT+CGG 0.581306 3_2:+5184933 None:intergenic
ATGTCATATATGTCTGGTAG+TGG 0.582072 3_2:-5182857 Msa0392210:CDS
AAAGAAGAAGGGTTTAGGAG+GGG 0.582496 3_2:+5186737 None:intergenic
CATTGCCCTTCTGAAGTCCA+AGG 0.584988 3_2:+5182877 None:intergenic
GCCACCCTTGGACTTCAGAA+GGG 0.586571 3_2:-5182882 Msa0392210:CDS
GAGGTGGTTCCTGAACCAAT+TGG 0.589076 3_2:-5185475 Msa0392210:CDS
AAAGAGTTGTCGACATGGAG+GGG 0.589208 3_2:+5184751 None:intergenic
GAAGAAGTAGTAGTAGTGGC+GGG 0.590829 3_2:+5186690 None:intergenic
GAAAGAAGAAGGGTTTAGGA+GGG 0.592426 3_2:+5186736 None:intergenic
AGCCTCTTCGATTGATGGAG+AGG 0.592683 3_2:-5185312 Msa0392210:CDS
TCCACGAAAAGCATGAGAGC+TGG 0.595770 3_2:-5184825 Msa0392210:CDS
ATCGGGAATAAGGCCAGGCA+AGG 0.595930 3_2:+5184951 None:intergenic
CTCTCTTTCCTGCATCACCC+TGG 0.596005 3_2:+5185351 None:intergenic
AGCCAATTGGATGAATGAGA+TGG 0.598931 3_2:-5185016 Msa0392210:CDS
CAGGTGCTGCTACCTCATGA+AGG 0.601758 3_2:-5182941 Msa0392210:CDS
CTCCTCTCCATCAATCGAAG+AGG 0.603846 3_2:+5185310 None:intergenic
GAATGTTTAAGAAGTAGCCA+TGG 0.606023 3_2:+5186510 None:intergenic
ATCGAGAACAGCGCAGCCAA+GGG 0.606776 3_2:-5187027 Msa0392210:five_prime_UTR
GTTTAAGAAGTAGCCATGGA+AGG 0.609586 3_2:+5186514 None:intergenic
CATGCATTCCAGCATTCAGA+AGG 0.612913 3_2:-5184683 Msa0392210:intron
AGAAGAGGAAGATGCCGAAG+AGG 0.612915 3_2:+5186392 None:intergenic
CAGGTGGAAAGCCTTTCCCC+CGG 0.613517 3_2:-5182904 Msa0392210:CDS
TCATGAGGTAGCAGCACCTG+TGG 0.616247 3_2:+5182944 None:intergenic
TAAGAAGTAGCCATGGAAGG+TGG 0.617123 3_2:+5186517 None:intergenic
AAGTGGATGATAATTCCTCT+GGG 0.617994 3_2:-5185615 Msa0392210:CDS
TCACAGTCTAGAATCAATGC+AGG 0.618620 3_2:+5184572 None:intergenic
TACCAACTTTACATCAGTCA+AGG 0.621768 3_2:+5182744 None:intergenic
AAACTACGTATTTGTTACCA+GGG 0.623005 3_2:-5185368 Msa0392210:CDS
GTAAGTCGCTTCTTCTGCAT+AGG 0.624407 3_2:+5185586 None:intergenic
TGGTTATTCCCCTCCCAAAG+TGG 0.626744 3_2:-5184805 Msa0392210:CDS
CAGCAAGTTCTATCTGTCGA+AGG 0.626856 3_2:-5182989 Msa0392210:CDS
ATACACGGTCTCTTATATCA+GGG 0.627573 3_2:+5184725 None:intergenic
AACAGCACAAGGAAGTGAAG+AGG 0.634339 3_2:+5186788 None:intergenic
CACCCTCGAGATAAAATACA+CGG 0.637012 3_2:+5184710 None:intergenic
AAGTAGTTATACTTTCAGCA+TGG 0.639328 3_2:+5185662 None:intergenic
GCCCTTCTGAAGTCCAAGGG+TGG 0.642155 3_2:+5182881 None:intergenic
TGAAGTCCAAGGGTGGCCGG+GGG 0.643695 3_2:+5182888 None:intergenic
ATTGCCCTTCTGAAGTCCAA+GGG 0.645360 3_2:+5182878 None:intergenic
GCAAGGATATTGAAGCCAAG+AGG 0.646490 3_2:-5184532 Msa0392210:CDS
GGTGTAAAGAGTTGTCGACA+TGG 0.647270 3_2:+5184746 None:intergenic
ACCCAATATTGATTTCAGCA+AGG 0.647767 3_2:-5184549 Msa0392210:CDS
AGCCACAGGTTACCTTCATG+AGG 0.659085 3_2:+5182929 None:intergenic
TTCCTGAACCAATTGGCAAG+TGG 0.660138 3_2:-5185468 Msa0392210:CDS
ACTGCGTGATCTCGTCGAGG+TGG 0.663093 3_2:-5185491 Msa0392210:CDS
GTTGAGGGTAATATCAGTGT+TGG 0.665129 3_2:-5185556 Msa0392210:CDS
AAATAGCCAGAACCAACCAC+AGG 0.667625 3_2:-5182960 Msa0392210:CDS
AAGGAAGTGAAGAGGTTGGG+CGG 0.672128 3_2:+5186796 None:intergenic
GGGGTGGAAATAACAGCACA+AGG 0.681411 3_2:+5186777 None:intergenic
TCTGAATGCTGGAATGCATG+TGG 0.686716 3_2:+5184686 None:intergenic
GTAAAGAGTTGTCGACATGG+AGG 0.688565 3_2:+5184749 None:intergenic
GGAATAGCCAACAAATCAGG+AGG 0.689568 3_2:+5186306 None:intergenic
AAAACATGAACACATAAACA+AGG 0.693143 3_2:+5182794 None:intergenic
ACAGATTACTACAACAACAG+AGG 0.696495 3_2:-5186433 Msa0392210:CDS
TGAACTGCGTGATCTCGTCG+AGG 0.698431 3_2:-5185494 Msa0392210:CDS
CTGCATAGGCTGCTTCCCAG+AGG 0.699038 3_2:+5185600 None:intergenic
TACCTCATGAAGGTAACCTG+TGG 0.701825 3_2:-5182931 Msa0392210:CDS
AAGGTGTATGCATACCTCTG+TGG 0.702954 3_2:+5185394 None:intergenic
GGTAACCTGTGGCTACCAGG+TGG 0.705128 3_2:-5182920 Msa0392210:CDS
TAAGAAGCATTAGAATAACG+AGG 0.743544 3_2:+5186603 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATATTAACAC+TGG - chr3_2:5186382-5186401 Msa0392210:CDS 10.0%
!!! TTTGATTTTCTAATACAAAA+TGG - chr3_2:5183935-5183954 Msa0392210:intron 15.0%
!!! AATTACTTTTAATTACAAAC+AGG - chr3_2:5185134-5185153 Msa0392210:intron 15.0%
!!! ATTATGATTTTTATTATCCT+TGG - chr3_2:5185321-5185340 Msa0392210:CDS 15.0%
!! AAAAGACAATTTACTTATTA+GGG + chr3_2:5186659-5186678 None:intergenic 15.0%
!! AAAAAGACAATTTACTTATT+AGG + chr3_2:5186660-5186679 None:intergenic 15.0%
!! ATTCTAATAAACCTCAAAAA+CGG + chr3_2:5182763-5182782 None:intergenic 20.0%
!! AAATGTACCAATATTACAAA+GGG + chr3_2:5183807-5183826 None:intergenic 20.0%
!! TAAATGTACCAATATTACAA+AGG + chr3_2:5183808-5183827 None:intergenic 20.0%
!! CTTTGTATTAGAAAATCAAA+TGG + chr3_2:5183902-5183921 None:intergenic 20.0%
!!! TTTGATTTTCTAATACAAAG+TGG - chr3_2:5183902-5183921 Msa0392210:intron 20.0%
!! TTGAAGAAAAAATGTTGTAT+TGG + chr3_2:5184539-5184558 None:intergenic 20.0%
!!! ATGTTTTGAGAGTTTAAAAA+AGG - chr3_2:5184633-5184652 Msa0392210:intron 20.0%
!! TCTGATTATTATATCTTTGT+TGG - chr3_2:5185346-5185365 Msa0392210:CDS 20.0%
!! CTGATTATTATATCTTTGTT+GGG - chr3_2:5185347-5185366 Msa0392210:CDS 20.0%
!!! TTTTGAATCTTTTGATTGTA+TGG - chr3_2:5185657-5185676 Msa0392210:CDS 20.0%
!!! ATAAAATGGTGTTTTGATTT+GGG + chr3_2:5185893-5185912 None:intergenic 20.0%
!!! TTCTTTTAGTTGTAAATAGT+AGG - chr3_2:5186092-5186111 Msa0392210:intron 20.0%
!! AGCTAAAATTATTTACTTTC+AGG + chr3_2:5186300-5186319 None:intergenic 20.0%
!! TCTTTAATTAGTAAAGTTCT+TGG - chr3_2:5186548-5186567 Msa0392210:CDS 20.0%
!!! ATGTTTAGTTTGATTACAAA+CGG - chr3_2:5187147-5187166 Msa0392210:five_prime_UTR 20.0%
! TTTCTCTGTGAATTTGAAAA+GGG - chr3_2:5182609-5182628 Msa0392210:three_prime_UTR 25.0%
! TTCTAATAAACCTCAAAAAC+GGG + chr3_2:5182762-5182781 None:intergenic 25.0%
! AAAGAAGAATGAAAGAAGAA+GGG + chr3_2:5183008-5183027 None:intergenic 25.0%
! TAAAGAAGAATGAAAGAAGA+AGG + chr3_2:5183009-5183028 None:intergenic 25.0%
!!! CTTTACTATCTTCTGTTTTT+GGG - chr3_2:5183585-5183604 Msa0392210:intron 25.0%
! GAAATTAAATGATGTCCTAA+GGG + chr3_2:5183670-5183689 None:intergenic 25.0%
! TGAAATTAAATGATGTCCTA+AGG + chr3_2:5183671-5183690 None:intergenic 25.0%
! ATTATAGCAAACAGTCATTT+GGG + chr3_2:5183866-5183885 None:intergenic 25.0%
! TATTATAGCAAACAGTCATT+TGG + chr3_2:5183867-5183886 None:intergenic 25.0%
!!! AACAAATACGTAGTTTTGAA+AGG + chr3_2:5184359-5184378 None:intergenic 25.0%
! CACACAAGAATATGAAAAAA+TGG + chr3_2:5184481-5184500 None:intergenic 25.0%
!! TCTGAGATATATAAAACCAT+CGG + chr3_2:5184801-5184820 None:intergenic 25.0%
! AAAATCGTAAAATCAGACAT+GGG + chr3_2:5185090-5185109 None:intergenic 25.0%
! AAAAATCGTAAAATCAGACA+TGG + chr3_2:5185091-5185110 None:intergenic 25.0%
! TTGTTAAAATTTACGTGACA+TGG - chr3_2:5185254-5185273 Msa0392210:intron 25.0%
! ATAAATCTTGAGTCCTTTAT+TGG - chr3_2:5185681-5185700 Msa0392210:CDS 25.0%
! TGATACAAATAACTTCGTAT+GGG + chr3_2:5185719-5185738 None:intergenic 25.0%
! TTGATACAAATAACTTCGTA+TGG + chr3_2:5185720-5185739 None:intergenic 25.0%
! GAAGTTATTTGTATCAACTT+AGG - chr3_2:5185723-5185742 Msa0392210:CDS 25.0%
!!! TAAAATGGTGTTTTGATTTG+GGG + chr3_2:5185892-5185911 None:intergenic 25.0%
!!! CATAAAATGGTGTTTTGATT+TGG + chr3_2:5185894-5185913 None:intergenic 25.0%
!! AGTTCACTGTTTTACTTTAA+TGG + chr3_2:5185941-5185960 None:intergenic 25.0%
! ATTAAAGTAAAACAGTGAAC+TGG - chr3_2:5185940-5185959 Msa0392210:intron 25.0%
! AGTCATCTTCTCATTATTTA+AGG - chr3_2:5185993-5186012 Msa0392210:intron 25.0%
! GTCATCTTCTCATTATTTAA+GGG - chr3_2:5185994-5186013 Msa0392210:intron 25.0%
! TCATCTTCTCATTATTTAAG+GGG - chr3_2:5185995-5186014 Msa0392210:intron 25.0%
!! AAAGATGTTTGACTTATAGA+TGG + chr3_2:5186148-5186167 None:intergenic 25.0%
! ACTTAAATCTCTTAAAGCAA+TGG + chr3_2:5186185-5186204 None:intergenic 25.0%
!!! ATTGCTTTAAGAGATTTAAG+TGG - chr3_2:5186184-5186203 Msa0392210:intron 25.0%
! TATTATTAGTCACACTGAAA+GGG + chr3_2:5186337-5186356 None:intergenic 25.0%
! TTATTATTAGTCACACTGAA+AGG + chr3_2:5186338-5186357 None:intergenic 25.0%
!! TAGTTTAACTTAACACATAG+TGG + chr3_2:5186623-5186642 None:intergenic 25.0%
! ACAATTTACTTATTAGGGAA+CGG + chr3_2:5186654-5186673 None:intergenic 25.0%
!!! TGTCTTTTTTGTTTTGTGTA+TGG - chr3_2:5186671-5186690 Msa0392210:CDS 25.0%
! AAAACATGAACACATAAACA+AGG + chr3_2:5186940-5186959 None:intergenic 25.0%
!!! TGCATGTAAAGATTTTAACT+CGG - chr3_2:5186963-5186982 Msa0392210:five_prime_UTR 25.0%
!!! GTAAAGTTGGTAGTTATTTA+TGG - chr3_2:5186998-5187017 Msa0392210:five_prime_UTR 25.0%
! TATTTCTTTGGTTACAAAGA+TGG - chr3_2:5187063-5187082 Msa0392210:five_prime_UTR 25.0%
CTTTCTCTGTGAATTTGAAA+AGG - chr3_2:5182608-5182627 Msa0392210:three_prime_UTR 30.0%
!! TTTTTGAAGAGGGAATGAAA+GGG + chr3_2:5183084-5183103 None:intergenic 30.0%
!! ATTTTTGAAGAGGGAATGAA+AGG + chr3_2:5183085-5183104 None:intergenic 30.0%
!! TAAGAAGCATTAGAATAACG+AGG + chr3_2:5183131-5183150 None:intergenic 30.0%
!!! TTTTGGTGTTATTACTAGTG+TGG + chr3_2:5183193-5183212 None:intergenic 30.0%
! TAGTAATCTGTTGTTGTTCA+GGG + chr3_2:5183289-5183308 None:intergenic 30.0%
CTTCATCTTTCAGACTTAAT+AGG - chr3_2:5183372-5183391 Msa0392210:intron 30.0%
CAAACAACTCTACAAAGATA+AGG - chr3_2:5183511-5183530 Msa0392210:intron 30.0%
! GCTTTACTATCTTCTGTTTT+TGG - chr3_2:5183584-5183603 Msa0392210:intron 30.0%
CGTGTTAGTAATTTCATGAA+AGG - chr3_2:5183612-5183631 Msa0392210:intron 30.0%
ATTTCATGAAAGGACACATT+TGG - chr3_2:5183622-5183641 Msa0392210:intron 30.0%
TTTCATGAAAGGACACATTT+GGG - chr3_2:5183623-5183642 Msa0392210:intron 30.0%
TTCCTTAAACAATTCCCTTA+GGG - chr3_2:5183766-5183785 Msa0392210:intron 30.0%
!! AAAGTTTTGACCTTTGTGTT+GGG - chr3_2:5183973-5183992 Msa0392210:intron 30.0%
AAGTAGTTATACTTTCAGCA+TGG + chr3_2:5184072-5184091 None:intergenic 30.0%
! AAAACTACGTATTTGTTACC+AGG - chr3_2:5184362-5184381 Msa0392210:intron 30.0%
! AAACTACGTATTTGTTACCA+GGG - chr3_2:5184363-5184382 Msa0392210:intron 30.0%
! AATGTTGTATTGGCATGAAA+AGG + chr3_2:5184529-5184548 None:intergenic 30.0%
!!! CATTTTTTCTTCAAACGTGT+TGG - chr3_2:5184545-5184564 Msa0392210:CDS 30.0%
ATTTATTTCCTTTCCCTGTT+TGG - chr3_2:5184581-5184600 Msa0392210:intron 30.0%
ATCTCAAATCAAACCAAACA+GGG + chr3_2:5184597-5184616 None:intergenic 30.0%
AATCTCAAATCAAACCAAAC+AGG + chr3_2:5184598-5184617 None:intergenic 30.0%
!! TGGTTTGATTTGAGATTAAC+AGG - chr3_2:5184601-5184620 Msa0392210:intron 30.0%
AATCTCACTGTGTTCAATAA+AGG - chr3_2:5184670-5184689 Msa0392210:intron 30.0%
AGATAAGCATTTATGACTCT+TGG - chr3_2:5184738-5184757 Msa0392210:CDS 30.0%
ATATAAAACCATCGGGAATA+AGG + chr3_2:5184793-5184812 None:intergenic 30.0%
CTGAGATATATAAAACCATC+GGG + chr3_2:5184800-5184819 None:intergenic 30.0%
TCCTTAACTTCATTCTTTGA+TGG + chr3_2:5184841-5184860 None:intergenic 30.0%
! TGGTAATCATGGAGTATTAT+CGG - chr3_2:5184946-5184965 Msa0392210:CDS 30.0%
!! CATTCAGAAGGTATCAAATT+TGG - chr3_2:5185060-5185079 Msa0392210:intron 30.0%
TCCTTGCTGAAATCAATATT+GGG + chr3_2:5185186-5185205 None:intergenic 30.0%
ATCCTTGCTGAAATCAATAT+TGG + chr3_2:5185187-5185206 None:intergenic 30.0%
GATATAATAATCAGACTCCA+AGG + chr3_2:5185341-5185360 None:intergenic 30.0%
TTATTATATCTTTGTTGGGC+TGG - chr3_2:5185351-5185370 Msa0392210:CDS 30.0%
TATTATATCTTTGTTGGGCT+GGG - chr3_2:5185352-5185371 Msa0392210:CDS 30.0%
TTACCAACTGAAAGATACAA+TGG + chr3_2:5185537-5185556 None:intergenic 30.0%
!!! AAAATGGTGTTTTGATTTGG+GGG + chr3_2:5185891-5185910 None:intergenic 30.0%
CAGATAGACGAATCATAAAA+TGG + chr3_2:5185907-5185926 None:intergenic 30.0%
CATCTTCTCATTATTTAAGG+GGG - chr3_2:5185996-5186015 Msa0392210:intron 30.0%
ATCTTCTCATTATTTAAGGG+GGG - chr3_2:5185997-5186016 Msa0392210:intron 30.0%
AGTATAGCAACCAAAAAAAG+AGG - chr3_2:5186117-5186136 Msa0392210:intron 30.0%
ACAGACTGTTTATGATATAC+TGG - chr3_2:5186247-5186266 Msa0392210:CDS 30.0%
CAGACTGTTTATGATATACT+GGG - chr3_2:5186248-5186267 Msa0392210:CDS 30.0%
ATTATTAGTCACACTGAAAG+GGG + chr3_2:5186336-5186355 None:intergenic 30.0%
AGTGTGACTAATAATAACAC+CGG - chr3_2:5186341-5186360 Msa0392210:CDS 30.0%
!!! ATTTTTTTTGAAGGGTAGTC+CGG + chr3_2:5186363-5186382 None:intergenic 30.0%
!! AAACATAGAATTTGCTACCT+TGG + chr3_2:5186529-5186548 None:intergenic 30.0%
ATTCAAAAAACTCTGCAACT+TGG + chr3_2:5186711-5186730 None:intergenic 30.0%
TTGGGATGAAGATATACTAA+TGG - chr3_2:5186912-5186931 Msa0392210:five_prime_UTR 30.0%
!! CTACTTGGTTTGTATTTCTT+TGG - chr3_2:5187051-5187070 Msa0392210:five_prime_UTR 30.0%
ACAGAGAAAGAGAGACAAAA+GGG + chr3_2:5182598-5182617 None:intergenic 35.0%
GAATGAAAGAAGAAGGGTTT+AGG + chr3_2:5183002-5183021 None:intergenic 35.0%
AGAAGAAGAAGTAGTAGTAG+TGG + chr3_2:5183048-5183067 None:intergenic 35.0%
!! AGGAGAGAGATTTTTGAAGA+GGG + chr3_2:5183094-5183113 None:intergenic 35.0%
!! AAGGAGAGAGATTTTTGAAG+AGG + chr3_2:5183095-5183114 None:intergenic 35.0%
GAATGTTTAAGAAGTAGCCA+TGG + chr3_2:5183224-5183243 None:intergenic 35.0%
! GTAGTAATCTGTTGTTGTTC+AGG + chr3_2:5183290-5183309 None:intergenic 35.0%
ACAGATTACTACAACAACAG+AGG - chr3_2:5183298-5183317 Msa0392210:intron 35.0%
TGAAGTTGTGTTTGTAGAAG+AGG + chr3_2:5183357-5183376 None:intergenic 35.0%
CATCTTTCAGACTTAATAGG+AGG - chr3_2:5183375-5183394 Msa0392210:intron 35.0%
!!! ACGAGTTTTCTGAAATTCCT+GGG + chr3_2:5183461-5183480 None:intergenic 35.0%
!!! AACGAGTTTTCTGAAATTCC+TGG + chr3_2:5183462-5183481 None:intergenic 35.0%
TTCAGAAAACTCGTTCAGAA+AGG - chr3_2:5183467-5183486 Msa0392210:intron 35.0%
TTCATGAAAGGACACATTTG+GGG - chr3_2:5183624-5183643 Msa0392210:intron 35.0%
GTTCCTTAAACAATTCCCTT+AGG - chr3_2:5183765-5183784 Msa0392210:intron 35.0%
AGCACAACCCTTTGTAATAT+TGG - chr3_2:5183797-5183816 Msa0392210:intron 35.0%
GACACAACCTAACATATTCT+AGG - chr3_2:5183839-5183858 Msa0392210:intron 35.0%
TTTGGGTCCTAGAATATGTT+AGG + chr3_2:5183849-5183868 None:intergenic 35.0%
!! GAAAGTTTTGACCTTTGTGT+TGG - chr3_2:5183972-5183991 Msa0392210:intron 35.0%
!! AAAGAGTGTTGATGAAGAAG+TGG - chr3_2:5184099-5184118 Msa0392210:intron 35.0%
AAGTGGATGATAATTCCTCT+GGG - chr3_2:5184116-5184135 Msa0392210:intron 35.0%
! TTTCATTGGCTATTCTCTGA+AGG + chr3_2:5184213-5184232 None:intergenic 35.0%
ACGCAGTTCAATAGTTTCAT+TGG + chr3_2:5184227-5184246 None:intergenic 35.0%
TCATATTCTTGTGTGTAGTG+AGG - chr3_2:5184486-5184505 Msa0392210:intron 35.0%
CATATTCTTGTGTGTAGTGA+GGG - chr3_2:5184487-5184506 Msa0392210:intron 35.0%
AAATCAAACCAAACAGGGAA+AGG + chr3_2:5184592-5184611 None:intergenic 35.0%
! ATTCTTTGATGGCAAGTATC+AGG + chr3_2:5184830-5184849 None:intergenic 35.0%
GCCATCAAAGAATGAAGTTA+AGG - chr3_2:5184837-5184856 Msa0392210:CDS 35.0%
TTAAGGAAGAGAGAAGAAGA+AGG - chr3_2:5184854-5184873 Msa0392210:CDS 35.0%
TACTCCATGATTACCACTTT+GGG + chr3_2:5184942-5184961 None:intergenic 35.0%
ATACTCCATGATTACCACTT+TGG + chr3_2:5184943-5184962 None:intergenic 35.0%
ATACACGGTCTCTTATATCA+GGG + chr3_2:5185009-5185028 None:intergenic 35.0%
AATACACGGTCTCTTATATC+AGG + chr3_2:5185010-5185029 None:intergenic 35.0%
ATTTGATACCTTCTGAATGC+TGG + chr3_2:5185059-5185078 None:intergenic 35.0%
!! ACCCAATATTGATTTCAGCA+AGG - chr3_2:5185182-5185201 Msa0392210:intron 35.0%
ATAGTTATCTTACTCCCTCT+TGG + chr3_2:5185217-5185236 None:intergenic 35.0%
!! CAGACAAAAAAAGCATCTGA+TGG + chr3_2:5185294-5185313 None:intergenic 35.0%
TAATTCCTGCACCTTAAGTA+AGG - chr3_2:5185414-5185433 Msa0392210:CDS 35.0%
ACATTGAGTGTCCTTACTTA+AGG + chr3_2:5185428-5185447 None:intergenic 35.0%
CTTCCATTGTATCTTTCAGT+TGG - chr3_2:5185531-5185550 Msa0392210:CDS 35.0%
CTGGGAAAAACTGTAAATGT+TGG + chr3_2:5185562-5185581 None:intergenic 35.0%
! CAACATTTACAGTTTTTCCC+AGG - chr3_2:5185560-5185579 Msa0392210:CDS 35.0%
! AGTTTTTCCCAGGACTTTTT+AGG - chr3_2:5185570-5185589 Msa0392210:CDS 35.0%
TGAGTCCTTTATTGGAACTT+TGG - chr3_2:5185689-5185708 Msa0392210:CDS 35.0%
GAGTCCTTTATTGGAACTTT+GGG - chr3_2:5185690-5185709 Msa0392210:CDS 35.0%
TCTTTATCATCATGCTACAC+TGG - chr3_2:5185776-5185795 Msa0392210:intron 35.0%
! TGGTAATTGACTCAGATTGT+TGG - chr3_2:5185796-5185815 Msa0392210:intron 35.0%
!!! AAATGGTGTTTTGATTTGGG+GGG + chr3_2:5185890-5185909 None:intergenic 35.0%
TCTTCTCATTATTTAAGGGG+GGG - chr3_2:5185998-5186017 Msa0392210:intron 35.0%
!!! GATGGACTTACCTCTTTTTT+TGG + chr3_2:5186130-5186149 None:intergenic 35.0%
! GTCAAACATCTTTTTGCAGA+CGG - chr3_2:5186155-5186174 Msa0392210:intron 35.0%
! TCAAACATCTTTTTGCAGAC+GGG - chr3_2:5186156-5186175 Msa0392210:intron 35.0%
TGTTTATGATATACTGGGAG+TGG - chr3_2:5186253-5186272 Msa0392210:CDS 35.0%
GGTAGTCAACAGATAACATT+TGG - chr3_2:5186274-5186293 Msa0392210:CDS 35.0%
TTATTAGTCACACTGAAAGG+GGG + chr3_2:5186335-5186354 None:intergenic 35.0%
GTTCTCTGTGATTAAGTATC+TGG - chr3_2:5186494-5186513 Msa0392210:CDS 35.0%
!! ACTTAACACATAGTGGACAA+AGG + chr3_2:5186616-5186635 None:intergenic 35.0%
ATTTACTTATTAGGGAACGG+TGG + chr3_2:5186651-5186670 None:intergenic 35.0%
ATGTCATATATGTCTGGTAG+TGG - chr3_2:5186874-5186893 Msa0392210:five_prime_UTR 35.0%
TGGCTGATAACATTGTGATT+GGG - chr3_2:5186894-5186913 Msa0392210:five_prime_UTR 35.0%
TACCAACTTTACATCAGTCA+AGG + chr3_2:5186990-5187009 None:intergenic 35.0%
TGGTTGTCAAATACTTCGTT+AGG - chr3_2:5187018-5187037 Msa0392210:five_prime_UTR 35.0%
CACAGAGAAAGAGAGACAAA+AGG + chr3_2:5182599-5182618 None:intergenic 40.0%
! ATGTTTTGTCTCTGTCTGTC+TGG - chr3_2:5182635-5182654 Msa0392210:three_prime_UTR 40.0%
TAAAGGAAGAAAAAGAGGGG+TGG + chr3_2:5182973-5182992 None:intergenic 40.0%
GGGTAAAGGAAGAAAAAGAG+GGG + chr3_2:5182976-5182995 None:intergenic 40.0%
GGGGTAAAGGAAGAAAAAGA+GGG + chr3_2:5182977-5182996 None:intergenic 40.0%
AAAGAAGAAGGGTTTAGGAG+GGG + chr3_2:5182997-5183016 None:intergenic 40.0%
GAAAGAAGAAGGGTTTAGGA+GGG + chr3_2:5182998-5183017 None:intergenic 40.0%
TGAAAGAAGAAGGGTTTAGG+AGG + chr3_2:5182999-5183018 None:intergenic 40.0%
AGAAGAAGTAGTAGTAGTGG+CGG + chr3_2:5183045-5183064 None:intergenic 40.0%
ACGAGGAGAAGAAGAAGAAA+AGG + chr3_2:5183114-5183133 None:intergenic 40.0%
ATTACTAGTGTGGCGTGTTA+GGG + chr3_2:5183183-5183202 None:intergenic 40.0%
TATTACTAGTGTGGCGTGTT+AGG + chr3_2:5183184-5183203 None:intergenic 40.0%
GTTTAAGAAGTAGCCATGGA+AGG + chr3_2:5183220-5183239 None:intergenic 40.0%
ACTTAATAGGAGGCAGCAAA+AGG - chr3_2:5183385-5183404 Msa0392210:intron 40.0%
! ATCTAGTCCTCCTGATTTGT+TGG - chr3_2:5183418-5183437 Msa0392210:intron 40.0%
!! CTCGTTCAGAAAGGTATTCA+AGG - chr3_2:5183476-5183495 Msa0392210:intron 40.0%
TCATGAAAGGACACATTTGG+GGG - chr3_2:5183625-5183644 Msa0392210:intron 40.0%
TGGCAAATCTAGTGATCAGA+TGG - chr3_2:5184006-5184025 Msa0392210:intron 40.0%
TACTTTCAGCATGGTTCTTG+TGG + chr3_2:5184063-5184082 None:intergenic 40.0%
GAAGTGGATGATAATTCCTC+TGG - chr3_2:5184115-5184134 Msa0392210:intron 40.0%
GTTGAGGGTAATATCAGTGT+TGG - chr3_2:5184175-5184194 Msa0392210:intron 40.0%
TCGAGGATATTGAAGTGATC+AGG + chr3_2:5184301-5184320 None:intergenic 40.0%
AGCCAATTGGATGAATGAGA+TGG - chr3_2:5184715-5184734 Msa0392210:CDS 40.0%
CTCCATCTCATTCATCCAAT+TGG + chr3_2:5184720-5184739 None:intergenic 40.0%
TAAAGAGTTGTCGACATGGA+GGG + chr3_2:5184984-5185003 None:intergenic 40.0%
! AGACCGTGTATTTTATCTCG+AGG - chr3_2:5185018-5185037 Msa0392210:CDS 40.0%
! GACCGTGTATTTTATCTCGA+GGG - chr3_2:5185019-5185038 Msa0392210:CDS 40.0%
CACCCTCGAGATAAAATACA+CGG + chr3_2:5185024-5185043 None:intergenic 40.0%
! TCACAGTCTAGAATCAATGC+AGG + chr3_2:5185162-5185181 None:intergenic 40.0%
CAAGGATATTGAAGCCAAGA+GGG - chr3_2:5185200-5185219 Msa0392210:intron 40.0%
AAGTTCCATACTTCGCACTT+GGG + chr3_2:5185395-5185414 None:intergenic 40.0%
TAAGTTCCATACTTCGCACT+TGG + chr3_2:5185396-5185415 None:intergenic 40.0%
CTAGTCTCCTAAAAAGTCCT+GGG + chr3_2:5185580-5185599 None:intergenic 40.0%
TCTAGTCTCCTAAAAAGTCC+TGG + chr3_2:5185581-5185600 None:intergenic 40.0%
!! GGTTTTGTGATTGTGTAACC+TGG - chr3_2:5185624-5185643 Msa0392210:CDS 40.0%
TTTGTGATTGTGTAACCTGG+TGG - chr3_2:5185627-5185646 Msa0392210:CDS 40.0%
TTGTGATTGTGTAACCTGGT+GGG - chr3_2:5185628-5185647 Msa0392210:CDS 40.0%
GAGTCCCAAAGTTCCAATAA+AGG + chr3_2:5185697-5185716 None:intergenic 40.0%
!!! AATGGTGTTTTGATTTGGGG+GGG + chr3_2:5185889-5185908 None:intergenic 40.0%
!! CATGTTTCGTGCTGGTTATT+AGG - chr3_2:5186030-5186049 Msa0392210:intron 40.0%
AGGGCAATGTCATATATGTC+TGG - chr3_2:5186868-5186887 Msa0392210:five_prime_UTR 40.0%
GTGGCTGATAACATTGTGAT+TGG - chr3_2:5186893-5186912 Msa0392210:five_prime_UTR 40.0%
GACCTTGACTGATGTAAAGT+TGG - chr3_2:5186985-5187004 Msa0392210:five_prime_UTR 40.0%
!! TTAGGTGCTACTAGACTACT+TGG - chr3_2:5187036-5187055 Msa0392210:five_prime_UTR 40.0%
ACGGGAAAGCAAAGGAGAAA+GGG + chr3_2:5182744-5182763 None:intergenic 45.0%
AACGGGAAAGCAAAGGAGAA+AGG + chr3_2:5182745-5182764 None:intergenic 45.0%
CCTCAAAAACGGGAAAGCAA+AGG + chr3_2:5182752-5182771 None:intergenic 45.0%
!! CCTTTGCTTTCCCGTTTTTG+AGG - chr3_2:5182749-5182768 Msa0392210:three_prime_UTR 45.0%
CACAAGGAAGTGAAGAGGTT+GGG + chr3_2:5182941-5182960 None:intergenic 45.0%
AACAGCACAAGGAAGTGAAG+AGG + chr3_2:5182946-5182965 None:intergenic 45.0%
GGGGGTAAAGGAAGAAAAAG+AGG + chr3_2:5182978-5182997 None:intergenic 45.0%
AAGAAGAAGGGTTTAGGAGG+GGG + chr3_2:5182996-5183015 None:intergenic 45.0%
GAAGAAGTAGTAGTAGTGGC+GGG + chr3_2:5183044-5183063 None:intergenic 45.0%
ACACCAAAAACCACCTTCCA+TGG - chr3_2:5183204-5183223 Msa0392210:intron 45.0%
! TAGCCATGGAAGGTGGTTTT+TGG + chr3_2:5183210-5183229 None:intergenic 45.0%
TAAGAAGTAGCCATGGAAGG+TGG + chr3_2:5183217-5183236 None:intergenic 45.0%
TTCCTCTTCCTCTTCCTCTT+CGG - chr3_2:5183325-5183344 Msa0392210:intron 45.0%
GGAATAGCCAACAAATCAGG+AGG + chr3_2:5183428-5183447 None:intergenic 45.0%
CCAGGAATAGCCAACAAATC+AGG + chr3_2:5183431-5183450 None:intergenic 45.0%
!! CCTGATTTGTTGGCTATTCC+TGG - chr3_2:5183428-5183447 Msa0392210:intron 45.0%
! TTTGTTGGCTATTCCTGGTG+TGG - chr3_2:5183433-5183452 Msa0392210:intron 45.0%
! TTGTTGGCTATTCCTGGTGT+GGG - chr3_2:5183434-5183453 Msa0392210:intron 45.0%
AGAGAGAGAGAGAAAGAGAG+AGG + chr3_2:5183550-5183569 None:intergenic 45.0%
GAATGCTAACAAGTGCCCTT+AGG - chr3_2:5183652-5183671 Msa0392210:intron 45.0%
CGCCCTAAGGGAATTGTTTA+AGG + chr3_2:5183771-5183790 None:intergenic 45.0%
ATGAACTGCACCCAACACAA+AGG + chr3_2:5183986-5184005 None:intergenic 45.0%
TTGTGTTGGGTGCAGTTCAT+TGG - chr3_2:5183986-5184005 Msa0392210:intron 45.0%
GTAAGTCGCTTCTTCTGCAT+AGG + chr3_2:5184148-5184167 None:intergenic 45.0%
CGACTTACGTTCTGTGTTGA+GGG - chr3_2:5184160-5184179 Msa0392210:intron 45.0%
TTCCTGAACCAATTGGCAAG+TGG - chr3_2:5184263-5184282 Msa0392210:intron 45.0%
! CTTTTTATGCTGAGCCACAG+AGG - chr3_2:5184323-5184342 Msa0392210:intron 45.0%
AAGGTGTATGCATACCTCTG+TGG + chr3_2:5184340-5184359 None:intergenic 45.0%
! ATTTGTTACCAGGGTGATGC+AGG - chr3_2:5184372-5184391 Msa0392210:intron 45.0%
CATCAAGCCTCTTCGATTGA+TGG - chr3_2:5184414-5184433 Msa0392210:intron 45.0%
!!! AGAGGAGTGTTTTCAGTGAC+AGG - chr3_2:5184437-5184456 Msa0392210:intron 45.0%
! GAGTGTTTTCAGTGACAGGA+TGG - chr3_2:5184441-5184460 Msa0392210:intron 45.0%
GAGCTGTTCATGAAGCCAAT+TGG - chr3_2:5184702-5184721 Msa0392210:CDS 45.0%
AGGAAGAGAGAAGAAGAAGG+TGG - chr3_2:5184857-5184876 Msa0392210:CDS 45.0%
! CATGATTACCACTTTGGGAG+GGG + chr3_2:5184937-5184956 None:intergenic 45.0%
! CCATGATTACCACTTTGGGA+GGG + chr3_2:5184938-5184957 None:intergenic 45.0%
TCCATGATTACCACTTTGGG+AGG + chr3_2:5184939-5184958 None:intergenic 45.0%
AAAGAGTTGTCGACATGGAG+GGG + chr3_2:5184983-5185002 None:intergenic 45.0%
GTAAAGAGTTGTCGACATGG+AGG + chr3_2:5184985-5185004 None:intergenic 45.0%
GGTGTAAAGAGTTGTCGACA+TGG + chr3_2:5184988-5185007 None:intergenic 45.0%
TCTGAATGCTGGAATGCATG+TGG + chr3_2:5185048-5185067 None:intergenic 45.0%
CATGCATTCCAGCATTCAGA+AGG - chr3_2:5185048-5185067 Msa0392210:intron 45.0%
GCAAGGATATTGAAGCCAAG+AGG - chr3_2:5185199-5185218 Msa0392210:intron 45.0%
! ATATCTTTGTTGGGCTGGGT+TGG - chr3_2:5185356-5185375 Msa0392210:CDS 45.0%
TATGTCCCAAGTGCGAAGTA+TGG - chr3_2:5185387-5185406 Msa0392210:CDS 45.0%
AGTGTCCTTACTTAAGGTGC+AGG + chr3_2:5185422-5185441 None:intergenic 45.0%
ACCACAAATGCTAGCCATTG+CGG + chr3_2:5185473-5185492 None:intergenic 45.0%
AATGGCTAGCATTTGTGGTG+TGG - chr3_2:5185474-5185493 Msa0392210:CDS 45.0%
TTTGTGGTGTGGTTCTCTTG+AGG - chr3_2:5185485-5185504 Msa0392210:CDS 45.0%
! TATTGCAGAGCTAGTCTGTG+CGG - chr3_2:5185602-5185621 Msa0392210:CDS 45.0%
ATTCAAAACCTGATCCCACC+AGG + chr3_2:5185645-5185664 None:intergenic 45.0%
!!! ATGGTGTTTTGATTTGGGGG+GGG + chr3_2:5185888-5185907 None:intergenic 45.0%
GTAAAGCTCATGTTTCGTGC+TGG - chr3_2:5186022-5186041 Msa0392210:intron 45.0%
GTATCTGGAAGTAGATGCCA+AGG - chr3_2:5186509-5186528 Msa0392210:CDS 45.0%
CAGCAAGTTCTATCTGTCGA+AGG - chr3_2:5186742-5186761 Msa0392210:CDS 45.0%
AAATAGCCAGAACCAACCAC+AGG - chr3_2:5186771-5186790 Msa0392210:CDS 45.0%
TACCTCATGAAGGTAACCTG+TGG - chr3_2:5186800-5186819 Msa0392210:CDS 45.0%
!! ATTGCCCTTCTGAAGTCCAA+GGG + chr3_2:5186856-5186875 None:intergenic 45.0%
!! TAATTTATTTATTAGTATTT+GGG + chr3_2:5182669-5182688 None:intergenic 5.0%
!! ATAATTTATTTATTAGTATT+TGG + chr3_2:5182670-5182689 None:intergenic 5.0%
!!! TTTATTTTATTTTTTTTGAA+GGG + chr3_2:5186371-5186390 None:intergenic 5.0%
!!! TTTTATTTTATTTTTTTTGA+AGG + chr3_2:5186372-5186391 None:intergenic 5.0%
! GGTTTTTGCCTGTGTACCCT+TGG + chr3_2:5182723-5182742 None:intergenic 50.0%
!!! TAACGTTGCGTCGCTTTTGG+AGG + chr3_2:5182835-5182854 None:intergenic 50.0%
!! CTGTAACGTTGCGTCGCTTT+TGG + chr3_2:5182838-5182857 None:intergenic 50.0%
CAAAAGCGACGCAACGTTAC+AGG - chr3_2:5182836-5182855 Msa0392210:exon 50.0%
AAGGAAGTGAAGAGGTTGGG+CGG + chr3_2:5182938-5182957 None:intergenic 50.0%
GCACAAGGAAGTGAAGAGGT+TGG + chr3_2:5182942-5182961 None:intergenic 50.0%
GGGGTGGAAATAACAGCACA+AGG + chr3_2:5182957-5182976 None:intergenic 50.0%
AAGGGTTTAGGAGGGGGTAA+AGG + chr3_2:5182990-5183009 None:intergenic 50.0%
AGTGTGGCGTGTTAGGGTTA+GGG + chr3_2:5183177-5183196 None:intergenic 50.0%
TAGTGTGGCGTGTTAGGGTT+AGG + chr3_2:5183178-5183197 None:intergenic 50.0%
AGAAGAGGAAGATGCCGAAG+AGG + chr3_2:5183342-5183361 None:intergenic 50.0%
TGAAAGGACACATTTGGGGG+TGG - chr3_2:5183628-5183647 Msa0392210:intron 50.0%
GAAAGGACACATTTGGGGGT+GGG - chr3_2:5183629-5183648 Msa0392210:intron 50.0%
AAAGGACACATTTGGGGGTG+GGG - chr3_2:5183630-5183649 Msa0392210:intron 50.0%
TGTGCTAACAAGCGCCCTAA+GGG + chr3_2:5183783-5183802 None:intergenic 50.0%
TTGTGCTAACAAGCGCCCTA+AGG + chr3_2:5183784-5183803 None:intergenic 50.0%
GAGTATCTGCAGAGCTCTGT+TGG - chr3_2:5184031-5184050 Msa0392210:intron 50.0%
GCGACTTACGTTCTGTGTTG+AGG - chr3_2:5184159-5184178 Msa0392210:intron 50.0%
GAGGTGGTTCCTGAACCAAT+TGG - chr3_2:5184256-5184275 Msa0392210:intron 50.0%
! TGCCACTTGCCAATTGGTTC+AGG + chr3_2:5184268-5184287 None:intergenic 50.0%
TGAACCAATTGGCAAGTGGC+AGG - chr3_2:5184267-5184286 Msa0392210:intron 50.0%
! ACATCCTGCCACTTGCCAAT+TGG + chr3_2:5184274-5184293 None:intergenic 50.0%
ATTGGCAAGTGGCAGGATGT+TGG - chr3_2:5184274-5184293 Msa0392210:intron 50.0%
!! GCTCAGCATAAAAAGCGTCG+AGG + chr3_2:5184318-5184337 None:intergenic 50.0%
CAGGAAAGAGAGTCTTCTGC+TGG - chr3_2:5184391-5184410 Msa0392210:intron 50.0%
AGCCTCTTCGATTGATGGAG+AGG - chr3_2:5184419-5184438 Msa0392210:intron 50.0%
CTCCTCTCCATCAATCGAAG+AGG + chr3_2:5184424-5184443 None:intergenic 50.0%
! CTTGTGTGTAGTGAGGGTGT+TGG - chr3_2:5184493-5184512 Msa0392210:intron 50.0%
AAACCATCGGGAATAAGGCC+AGG + chr3_2:5184788-5184807 None:intergenic 50.0%
! AGCTCTCATGCTTTTCGTGG+AGG + chr3_2:5184907-5184926 None:intergenic 50.0%
! TCCACGAAAAGCATGAGAGC+TGG - chr3_2:5184906-5184925 Msa0392210:CDS 50.0%
! ACCAGCTCTCATGCTTTTCG+TGG + chr3_2:5184910-5184929 None:intergenic 50.0%
TGGTTATTCCCCTCCCAAAG+TGG - chr3_2:5184926-5184945 Msa0392210:CDS 50.0%
CCCTCCCAAAGTGGTAATCA+TGG - chr3_2:5184935-5184954 Msa0392210:CDS 50.0%
ACAAATGCTAGCCATTGCGG+AGG + chr3_2:5185470-5185489 None:intergenic 50.0%
TCCGCAATGGCTAGCATTTG+TGG - chr3_2:5185469-5185488 Msa0392210:CDS 50.0%
TGGTGTGGTTCTCTTGAGGT+TGG - chr3_2:5185489-5185508 Msa0392210:CDS 50.0%
! ATTGCAGAGCTAGTCTGTGC+GGG - chr3_2:5185603-5185622 Msa0392210:CDS 50.0%
TTGTGTAACCTGGTGGGATC+AGG - chr3_2:5185634-5185653 Msa0392210:CDS 50.0%
!!! TGGTGTTTTGATTTGGGGGG+GGG + chr3_2:5185887-5185906 None:intergenic 50.0%
AGCCACAGGTTACCTTCATG+AGG + chr3_2:5186805-5186824 None:intergenic 50.0%
!! CATTGCCCTTCTGAAGTCCA+AGG + chr3_2:5186857-5186876 None:intergenic 50.0%
TATCGAGAACAGCGCAGCCA+AGG - chr3_2:5182703-5182722 Msa0392210:three_prime_UTR 55.0%
ATCGAGAACAGCGCAGCCAA+GGG - chr3_2:5182704-5182723 Msa0392210:three_prime_UTR 55.0%
TGGCGTGTTAGGGTTAGGGT+TGG + chr3_2:5183173-5183192 None:intergenic 55.0%
TGCCGAAGAGGAAGAGGAAG+AGG + chr3_2:5183330-5183349 None:intergenic 55.0%
GGAAGATGCCGAAGAGGAAG+AGG + chr3_2:5183336-5183355 None:intergenic 55.0%
AAATTCCTGGGACCCACACC+AGG + chr3_2:5183449-5183468 None:intergenic 55.0%
TGAACTGCGTGATCTCGTCG+AGG - chr3_2:5184237-5184256 Msa0392210:intron 55.0%
CTCTCTTTCCTGCATCACCC+TGG + chr3_2:5184383-5184402 None:intergenic 55.0%
CCAGGCAAGGTAGACACAAC+AGG + chr3_2:5184770-5184789 None:intergenic 55.0%
CCTGTTGTGTCTACCTTGCC+TGG - chr3_2:5184767-5184786 Msa0392210:CDS 55.0%
ATCGGGAATAAGGCCAGGCA+AGG + chr3_2:5184783-5184802 None:intergenic 55.0%
!! TTGCCTGGCCTTATTCCCGA+TGG - chr3_2:5184782-5184801 Msa0392210:CDS 55.0%
! CATGCTTTTCGTGGAGGTCG+CGG + chr3_2:5184901-5184920 None:intergenic 55.0%
AACACCACAGCTAGCTGCTG+TGG + chr3_2:5185757-5185776 None:intergenic 55.0%
!!! GTGTTTTGATTTGGGGGGGG+GGG + chr3_2:5185885-5185904 None:intergenic 55.0%
!!! GGTGTTTTGATTTGGGGGGG+GGG + chr3_2:5185886-5185905 None:intergenic 55.0%
TCATGAGGTAGCAGCACCTG+TGG + chr3_2:5186790-5186809 None:intergenic 55.0%
!! CAGGTGCTGCTACCTCATGA+AGG - chr3_2:5186790-5186809 Msa0392210:CDS 55.0%
GAAGGTAACCTGTGGCTACC+AGG - chr3_2:5186808-5186827 Msa0392210:CDS 55.0%
!! TTCTGAAGTCCAAGGGTGGC+CGG + chr3_2:5186849-5186868 None:intergenic 55.0%
GCCACCCTTGGACTTCAGAA+GGG - chr3_2:5186849-5186868 Msa0392210:five_prime_UTR 55.0%
!!! TGCGTCGCTTTTGGAGGTGG+CGG + chr3_2:5182829-5182848 None:intergenic 60.0%
!!! CGTTGCGTCGCTTTTGGAGG+TGG + chr3_2:5182832-5182851 None:intergenic 60.0%
GTGAAGAGGTTGGGCGGTGA+AGG + chr3_2:5182932-5182951 None:intergenic 60.0%
!! GTAGTAGTAGTGGCGGGTGC+AGG + chr3_2:5183038-5183057 None:intergenic 60.0%
CTATTCCTGGTGTGGGTCCC+AGG - chr3_2:5183441-5183460 Msa0392210:intron 60.0%
CTGCATAGGCTGCTTCCCAG+AGG + chr3_2:5184134-5184153 None:intergenic 60.0%
ACTGCGTGATCTCGTCGAGG+TGG - chr3_2:5184240-5184259 Msa0392210:intron 60.0%
GGAGGTCGCGGAGATACTCT+AGG + chr3_2:5184889-5184908 None:intergenic 60.0%
CTTGAGCTCTGCCTCCGCAA+TGG - chr3_2:5185456-5185475 Msa0392210:CDS 60.0%
! GCAGCACCTGTGGTTGGTTC+TGG + chr3_2:5186780-5186799 None:intergenic 60.0%
GAGGTAGCAGCACCTGTGGT+TGG + chr3_2:5186786-5186805 None:intergenic 60.0%
GGTAACCTGTGGCTACCAGG+TGG - chr3_2:5186811-5186830 Msa0392210:CDS 60.0%
GCTTTCCACCTGGTAGCCAC+AGG + chr3_2:5186819-5186838 None:intergenic 60.0%
CAGGTGGAAAGCCTTTCCCC+CGG - chr3_2:5186827-5186846 Msa0392210:exon 60.0%
! TCTGAAGTCCAAGGGTGGCC+GGG + chr3_2:5186848-5186867 None:intergenic 60.0%
GGCCACCCTTGGACTTCAGA+AGG - chr3_2:5186848-5186867 Msa0392210:five_prime_UTR 60.0%
!! GCCCTTCTGAAGTCCAAGGG+TGG + chr3_2:5186853-5186872 None:intergenic 60.0%
! CAGCGCAGCCAAGGGTACAC+AGG - chr3_2:5182712-5182731 Msa0392210:three_prime_UTR 65.0%
CCACAGCTAGCTGCTGTGGC+AGG + chr3_2:5185753-5185772 None:intergenic 65.0%
CCTGCCACAGCAGCTAGCTG+TGG - chr3_2:5185750-5185769 Msa0392210:intron 65.0%
CGGGGGAAAGGCTTTCCACC+TGG + chr3_2:5186829-5186848 None:intergenic 65.0%
TGAAGTCCAAGGGTGGCCGG+GGG + chr3_2:5186846-5186865 None:intergenic 65.0%
CTGAAGTCCAAGGGTGGCCG+GGG + chr3_2:5186847-5186866 None:intergenic 65.0%
TCCAAGGGTGGCCGGGGGAA+AGG + chr3_2:5186841-5186860 None:intergenic 70.0%
GCCTTTCCCCCGGCCACCCT+TGG - chr3_2:5186837-5186856 Msa0392210:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5182583 5187170 5182583 ID=Msa0392210;Name=Msa0392210
chr3_2 mRNA 5182583 5187170 5182583 ID=Msa0392210-mRNA-1;Parent=Msa0392210;Name=Msa0392210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=335|1|1|1|1|1|5|270|574
chr3_2 exon 5182583 5183054 5182583 ID=Msa0392210-mRNA-1:exon:1251;Parent=Msa0392210-mRNA-1
chr3_2 exon 5184530 5184597 5184530 ID=Msa0392210-mRNA-1:exon:1250;Parent=Msa0392210-mRNA-1
chr3_2 exon 5184684 5185061 5184684 ID=Msa0392210-mRNA-1:exon:1249;Parent=Msa0392210-mRNA-1
chr3_2 exon 5185291 5185752 5185291 ID=Msa0392210-mRNA-1:exon:1248;Parent=Msa0392210-mRNA-1
chr3_2 exon 5186221 5187170 5186221 ID=Msa0392210-mRNA-1:exon:1247;Parent=Msa0392210-mRNA-1
chr3_2 five_prime_UTR 5186836 5187170 5186836 ID=Msa0392210-mRNA-1:five_prime_utr;Parent=Msa0392210-mRNA-1
chr3_2 CDS 5186221 5186835 5186221 ID=Msa0392210-mRNA-1:cds;Parent=Msa0392210-mRNA-1
chr3_2 CDS 5185291 5185752 5185291 ID=Msa0392210-mRNA-1:cds;Parent=Msa0392210-mRNA-1
chr3_2 CDS 5184684 5185061 5184684 ID=Msa0392210-mRNA-1:cds;Parent=Msa0392210-mRNA-1
chr3_2 CDS 5184530 5184597 5184530 ID=Msa0392210-mRNA-1:cds;Parent=Msa0392210-mRNA-1
chr3_2 CDS 5182853 5183054 5182853 ID=Msa0392210-mRNA-1:cds;Parent=Msa0392210-mRNA-1
chr3_2 three_prime_UTR 5182583 5182852 5182583 ID=Msa0392210-mRNA-1:three_prime_utr;Parent=Msa0392210-mRNA-1
Gene Sequence

>Msa0392210

ATGCATAAACTCCTTCACCGCCCAACCTCTTCACTTCCTTGTGCTGTTATTTCCACCCCTCTTTTTCTTCCTTTACCCCCTCCTAAACCCTTCTTCTTTCATTCTTCTTTAACAATGCCTGCACCCGCCACTACTACTACTTCTTCTTCTTCTTCTTCTTCTGCCCTTTCATTCCCTCTTCAAAAATCTCTCTCCTTTTCTTCTTCTTCTCCTCGTTATTCTAATGCTTCTTATGTTCGCACATGTTTTTGTCCAACCCTAACCCTAACACGCCACACTAGTAATAACACCAAAAACCACCTTCCATGGCTACTTCTTAAACATTCTCAACATTCAAATGCTACTTCACACTCTTCTTTTCATAATAACCCTGAACAACAACAGATTACTACAACAACAGAGGATGATTCCTCTTCCTCTTCCTCTTCGGCATCTTCCTCTTCTACAAACACAACTTCATCTTTCAGACTTAATAGGAGGCAGCAAAAGGCAGAATCATCATCTAGTCCTCCTGATTTGTTGGCTATTCCTGGTGTGGGTCCCAGGAATTTCAGAAAACTCGTTCAGAAAGGTATTCAAGGTGTTGCTCAACTCAAACAACTCTACAAAGATAAGTTCATTGGCAAATCTAGTGATCAGATGGTTGAGTATCTGCAGAGCTCTGTTGGAATTATCCACAAGAACCATGCTGAAAGTATAACTACTTTCATTAAAAAGAGTGTTGATGAAGAAGTGGATGATAATTCCTCTGGGAAGCAGCCTATGCAGAAGAAGCGACTTACGTTCTGTGTTGAGGGTAATATCAGTGTTGGCAAGACTACTTTCCTTCAGAGAATAGCCAATGAAACTATTGAACTGCGTGATCTCGTCGAGGTGGTTCCTGAACCAATTGGCAAGTGGCAGGATGTTGGACCTGATCACTTCAATATCCTCGACGCTTTTTATGCTGAGCCACAGAGGTATGCATACACCTTTCAAAACTACGTATTTGTTACCAGGGTGATGCAGGAAAGAGAGTCTTCTGCTGGCATCAAGCCTCTTCGATTGATGGAGAGGAGTGTTTTCAGTGACAGGATGGTTTTTGTACGAGCTGTTCATGAAGCCAATTGGATGAATGAGATGGAGATAAGCATTTATGACTCTTGGTTTGATCCTGTTGTGTCTACCTTGCCTGGCCTTATTCCCGATGGTTTTATATATCTCAGAGCAAGTCCTGATACTTGCCATCAAAGAATGAAGTTAAGGAAGAGAGAAGAAGAAGGTGGAGTCAGCCTAGAGTATCTCCGCGACCTCCACGAAAAGCATGAGAGCTGGTTATTCCCCTCCCAAAGTGGTAATCATGGAGTATTATCGGTCAATAAGCTTCCCCTCCATGTCGACAACTCTTTACACCCTGATATAAGAGACCGTGTATTTTATCTCGAGGGTGACCACATGCATTCCAGCATTCAGAAGGTTCCTGCATTGATTCTAGACTGTGAACCCAATATTGATTTCAGCAAGGATATTGAAGCCAAGAGGGAATATGCGCGCCAAGTTGCAGAGTTTTTTGAATTTGTTAAGAAACAGCAAGTTCTATCTGTCGAAGGTGAGAAAAATAGCCAGAACCAACCACAGGTGCTGCTACCTCATGAAGGTAACCTGTGGCTACCAGGTGGAAAGCCTTTCCCCCGGCCACCCTTGGACTTCAGAAGGGCAATGTCATATATGTCTGGTAGTGGCTGA
Protein sequence

>Msa0392210

MHKLLHRPTSSLPCAVISTPLFLPLPPPKPFFFHSSLTMPAPATTTTSSSSSSSALSFPLQKSLSFSSSSPRYSNASYVRTCFCPTLTLTRHTSNNTKNHLPWLLLKHSQHSNATSHSSFHNNPEQQQITTTTEDDSSSSSSSASSSSTNTTSSFRLNRRQQKAESSSSPPDLLAIPGVGPRNFRKLVQKGIQGVAQLKQLYKDKFIGKSSDQMVEYLQSSVGIIHKNHAESITTFIKKSVDEEVDDNSSGKQPMQKKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEVVPEPIGKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSAGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSTLPGLIPDGFIYLRASPDTCHQRMKLRKREEEGGVSLEYLRDLHEKHESWLFPSQSGNHGVLSVNKLPLHVDNSLHPDIRDRVFYLEGDHMHSSIQKVPALILDCEPNIDFSKDIEAKREYARQVAEFFEFVKKQQVLSVEGEKNSQNQPQVLLPHEGNLWLPGGKPFPRPPLDFRRAMSYMSGSG*