AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116550 MtrunA17_Chr7g0258971 92.803 264 11 2 1 261 1 259 5.14e-178 489
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116550 AT2G41950.1 53.061 196 85 1 73 261 71 266 9.04e-70 216

Find 62 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAATTTAGTAAAATTT+TGG 0.022844 7_3:+64229369 Msa1116550:three_prime_UTR
CGAAAAGTTGACATATTTAT+AGG 0.230423 7_3:-64229433 None:intergenic
TGATGAGAATTCAAGGGTTT+TGG 0.256792 7_3:+64227330 Msa1116550:CDS
AAGAACATCCTCAAGTTTAA+AGG 0.259636 7_3:-64227560 None:intergenic
ATCCTTTCGAACACGCAATT+TGG 0.268681 7_3:+64229201 Msa1116550:three_prime_UTR
AATTTGGTTGGACTTTAATA+TGG 0.269394 7_3:+64229217 Msa1116550:three_prime_UTR
AGGTCAGAAATTACTACTTC+TGG 0.282494 7_3:-64229054 None:intergenic
TGAGGATGTTCTTGCTTCAT+TGG 0.285239 7_3:+64227570 Msa1116550:CDS
AGTTCAGGGAAATGGAATTA+AGG 0.301525 7_3:-64227126 None:intergenic
CTTTGATGTGGCTGAATTTG+TGG 0.337260 7_3:+64229119 Msa1116550:CDS
TTGTGGTTTGTATTGAAAAC+GGG 0.351189 7_3:-64227086 None:intergenic
GAAAAGTTGACATATTTATA+GGG 0.373438 7_3:-64229432 None:intergenic
AAGAATTCATCGACAAAGAT+TGG 0.377860 7_3:+64227251 Msa1116550:CDS
TTCATGGTTGAAGAAATAAC+AGG 0.383817 7_3:-64227007 None:intergenic
ATTGACCGTATTATATCATC+TGG 0.387173 7_3:+64227301 Msa1116550:CDS
TGGTCAGTGCTTGACTATAC+TGG 0.395973 7_3:+64227271 Msa1116550:CDS
GAGTTTGTGGATTGTTTAGT+TGG 0.406284 7_3:+64227370 Msa1116550:CDS
AACTAACCAGGTGAACATTT+CGG 0.410159 7_3:-64227595 None:intergenic
CCATTTGCATGGTAACACTA+TGG 0.411302 7_3:+64229335 Msa1116550:three_prime_UTR
TGGTGGAATTTGCATGGTGG+TGG 0.415264 7_3:-64227061 None:intergenic
TTTAATTTGATTAGTATCTC+AGG 0.419037 7_3:+64229296 Msa1116550:three_prime_UTR
AAGTGGTTCTGAAGAGTTTG+TGG 0.419196 7_3:+64227357 Msa1116550:CDS
GGAAAATTGATGAGAATTCA+AGG 0.435740 7_3:+64227323 Msa1116550:CDS
GATATAATACGGTCAATGTT+TGG 0.441601 7_3:-64227295 None:intergenic
TGCTTTGCCCTTTAAACTTG+AGG 0.443940 7_3:+64227552 Msa1116550:CDS
AGAACATCCTCAAGTTTAAA+GGG 0.444786 7_3:-64227559 None:intergenic
AGCTAAAGAAGATGAATTCA+TGG 0.452626 7_3:-64227023 None:intergenic
GAGATTTGATGATGATTTGA+GGG 0.454324 7_3:-64227179 None:intergenic
GGGTGGTGGAAAATGGGTTG+TGG 0.455723 7_3:-64227103 None:intergenic
CCATAGTGTTACCATGCAAA+TGG 0.457663 7_3:-64229335 None:intergenic
TAAAGAAACACAACATCAAA+AGG 0.463883 7_3:-64227520 None:intergenic
GTTCAGGGAAATGGAATTAA+GGG 0.464943 7_3:-64227125 None:intergenic
TTCAGTATTTCTCTCCCTTG+TGG 0.465559 7_3:-64229012 None:intergenic
TTATAGGGACTAAAAGTTGA+AGG 0.468975 7_3:-64229477 None:intergenic
GGTCAGAAATTACTACTTCT+GGG 0.473415 7_3:-64229053 None:intergenic
GTTGTGGTTTGTATTGAAAA+CGG 0.477823 7_3:-64227087 None:intergenic
GCTGAATTTGTGGATGAACC+TGG 0.481622 7_3:+64229129 Msa1116550:CDS
TCAAGTTTAAAGGGCAAAGC+AGG 0.503741 7_3:-64227550 None:intergenic
TGAGATTTGATGATGATTTG+AGG 0.510757 7_3:-64227180 None:intergenic
GGGTGGTGGAATTTGCATGG+TGG 0.512751 7_3:-64227064 None:intergenic
AGCTGCTAATTCCTTTGATG+TGG 0.512960 7_3:+64229107 Msa1116550:CDS
TTTCGAACACGCAATTTGGT+TGG 0.524335 7_3:+64229205 Msa1116550:three_prime_UTR
TTTCTTCAGGGATTGAAGCT+GGG 0.525098 7_3:-64227207 None:intergenic
AACCAAATTGCGTGTTCGAA+AGG 0.526692 7_3:-64229203 None:intergenic
GATAATATTAAGTGTTGGCA+AGG 0.531345 7_3:+64227466 Msa1116550:CDS
TTTGTGGATTGTTTAGTTGG+TGG 0.542847 7_3:+64227373 Msa1116550:CDS
GAAAATTGATGAGAATTCAA+GGG 0.549018 7_3:+64227324 Msa1116550:CDS
AAAACAGCTAAATAAAAGCC+AGG 0.558912 7_3:-64229147 None:intergenic
CACAAATTCAGCCACATCAA+AGG 0.572163 7_3:-64229118 None:intergenic
TCGTGTAAAATCCATTTGCA+TGG 0.572284 7_3:+64229324 Msa1116550:three_prime_UTR
AATATGATAATATTAAGTGT+TGG 0.576851 7_3:+64227461 Msa1116550:CDS
TGGTGGTGGTGTGAGAATGA+AGG 0.583844 7_3:-64227047 None:intergenic
TATTAAGTGTTGGCAAGGAG+AGG 0.585342 7_3:+64227471 Msa1116550:CDS
TGTGGTTTGTATTGAAAACG+GGG 0.588079 7_3:-64227085 None:intergenic
TTGGCTCCGAAATGTTCACC+TGG 0.591346 7_3:+64227589 Msa1116550:CDS
TTCAGGGAAATGGAATTAAG+GGG 0.628365 7_3:-64227124 None:intergenic
TCATGGTTGAAGAAATAACA+GGG 0.648096 7_3:-64227006 None:intergenic
GTGATTATCAGTCATCCACA+AGG 0.656212 7_3:+64228997 Msa1116550:CDS
TTGACCGTATTATATCATCT+GGG 0.656909 7_3:+64227302 Msa1116550:CDS
TCAGGGAAATGGAATTAAGG+GGG 0.657147 7_3:-64227123 None:intergenic
GTGGTTTGTATTGAAAACGG+GGG 0.682598 7_3:-64227084 None:intergenic
TGATTATCAGTCATCCACAA+GGG 0.725296 7_3:+64228998 Msa1116550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAAATTTAGTAAAATTTT+GGG + chr7_3:64229370-64229389 Msa1116550:three_prime_UTR 10.0%
!!! TAGTGATTAAAAATTTTATA+GGG - chr7_3:64229495-64229514 None:intergenic 10.0%
!! AATATGATAATATTAAGTGT+TGG + chr7_3:64227461-64227480 Msa1116550:CDS 15.0%
!! TATTGAAATTGAACAATATT+TGG + chr7_3:64227866-64227885 Msa1116550:intron 15.0%
!! ATTGAAATTGAACAATATTT+GGG + chr7_3:64227867-64227886 Msa1116550:intron 15.0%
!! TAATTGAATCAAATTCATAT+CGG - chr7_3:64228560-64228579 None:intergenic 15.0%
!!! CGATTTATTCTTTTTAATTT+TGG + chr7_3:64228953-64228972 Msa1116550:intron 15.0%
!!! CCAAAATTTTACTAAATTTT+AGG - chr7_3:64229372-64229391 None:intergenic 15.0%
!!! CCTAAAATTTAGTAAAATTT+TGG + chr7_3:64229369-64229388 Msa1116550:three_prime_UTR 15.0%
!!! GTAGTGATTAAAAATTTTAT+AGG - chr7_3:64229496-64229515 None:intergenic 15.0%
!! TTACTATTGTTCCTAAAAAA+TGG + chr7_3:64227494-64227513 Msa1116550:CDS 20.0%
!!! GATAACATTTTGTACTAAAT+AGG + chr7_3:64227791-64227810 Msa1116550:intron 20.0%
!!! AATTTGTTCAAATTAAGCTA+CGG + chr7_3:64227990-64228009 Msa1116550:intron 20.0%
!! TACAAAATATTGTAAAACAG+TGG - chr7_3:64228032-64228051 None:intergenic 20.0%
!!! TTTAATTTGATTAGTATCTC+AGG + chr7_3:64229296-64229315 Msa1116550:three_prime_UTR 20.0%
!!! GACTGTACTAATTTTTTTAT+GGG + chr7_3:64229392-64229411 Msa1116550:three_prime_UTR 20.0%
!!! TTATGGGTTAAATATGTTTT+TGG + chr7_3:64229408-64229427 Msa1116550:three_prime_UTR 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr7_3:64229435-64229454 None:intergenic 20.0%
!!! AAAATTGGATTTTGAGTTCA+GGG - chr7_3:64227143-64227162 None:intergenic 25.0%
!!! AAAAATTGGATTTTGAGTTC+AGG - chr7_3:64227144-64227163 None:intergenic 25.0%
! TTGAAGTGAAGTAGAAAAAT+TGG - chr7_3:64227158-64227177 None:intergenic 25.0%
!! TTTTCCCAGATGATATAATA+CGG - chr7_3:64227309-64227328 None:intergenic 25.0%
! GAAAATTGATGAGAATTCAA+GGG + chr7_3:64227324-64227343 Msa1116550:CDS 25.0%
! TAAAGAAACACAACATCAAA+AGG - chr7_3:64227523-64227542 None:intergenic 25.0%
!! TTTGTTCGTTAGTTTAGTAT+TGG + chr7_3:64227640-64227659 Msa1116550:intron 25.0%
! AGTTTCAATATGCAATGAAA+TGG - chr7_3:64227695-64227714 None:intergenic 25.0%
! TGAATATATGTGTTGTCAAT+CGG + chr7_3:64227950-64227969 Msa1116550:intron 25.0%
! ATTAGGCCAGTTTATATATT+AGG + chr7_3:64228137-64228156 Msa1116550:intron 25.0%
! TAAGATCTCATGAAATTATG+AGG - chr7_3:64228260-64228279 None:intergenic 25.0%
!!! CTCTGTTTTAATAAAAAGGT+CGG - chr7_3:64228517-64228536 None:intergenic 25.0%
!!! TGGACTCTGTTTTAATAAAA+AGG - chr7_3:64228521-64228540 None:intergenic 25.0%
! TTATTAAAACAGAGTCCAAA+AGG + chr7_3:64228523-64228542 Msa1116550:intron 25.0%
! TATTAAAACAGAGTCCAAAA+GGG + chr7_3:64228524-64228543 Msa1116550:intron 25.0%
! ACCTTATACATTTGATTATG+AGG + chr7_3:64228780-64228799 Msa1116550:intron 25.0%
! ATCTAGCAATGAAAAATGTA+TGG - chr7_3:64228831-64228850 None:intergenic 25.0%
!!! TAATTTTGGTTTTGACATGT+AGG + chr7_3:64228967-64228986 Msa1116550:intron 25.0%
!! CTTTGTAAATGTGTTTTATC+AGG - chr7_3:64229081-64229100 None:intergenic 25.0%
! AATTTGGTTGGACTTTAATA+TGG + chr7_3:64229217-64229236 Msa1116550:three_prime_UTR 25.0%
!! TGATAGTTAGCTAGAATTTT+AGG + chr7_3:64229252-64229271 Msa1116550:three_prime_UTR 25.0%
!!! GGACTGTACTAATTTTTTTA+TGG + chr7_3:64229391-64229410 Msa1116550:three_prime_UTR 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr7_3:64229436-64229455 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr7_3:64229466-64229485 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr7_3:64229467-64229486 None:intergenic 25.0%
TCATGGTTGAAGAAATAACA+GGG - chr7_3:64227009-64227028 None:intergenic 30.0%
TTCATGGTTGAAGAAATAAC+AGG - chr7_3:64227010-64227029 None:intergenic 30.0%
AGCTAAAGAAGATGAATTCA+TGG - chr7_3:64227026-64227045 None:intergenic 30.0%
! TTGTGGTTTGTATTGAAAAC+GGG - chr7_3:64227089-64227108 None:intergenic 30.0%
! GTTGTGGTTTGTATTGAAAA+CGG - chr7_3:64227090-64227109 None:intergenic 30.0%
!! GAGATTTGATGATGATTTGA+GGG - chr7_3:64227182-64227201 None:intergenic 30.0%
!! TGAGATTTGATGATGATTTG+AGG - chr7_3:64227183-64227202 None:intergenic 30.0%
AAGAATTCATCGACAAAGAT+TGG + chr7_3:64227251-64227270 Msa1116550:CDS 30.0%
GATATAATACGGTCAATGTT+TGG - chr7_3:64227298-64227317 None:intergenic 30.0%
ATTGACCGTATTATATCATC+TGG + chr7_3:64227301-64227320 Msa1116550:CDS 30.0%
TTGACCGTATTATATCATCT+GGG + chr7_3:64227302-64227321 Msa1116550:CDS 30.0%
GGAAAATTGATGAGAATTCA+AGG + chr7_3:64227323-64227342 Msa1116550:CDS 30.0%
!! TCATGACTCACTTTTGATAT+TGG + chr7_3:64227423-64227442 Msa1116550:CDS 30.0%
!! GATAATATTAAGTGTTGGCA+AGG + chr7_3:64227466-64227485 Msa1116550:CDS 30.0%
!!! TCAAAAGGAGACCATTTTTT+AGG - chr7_3:64227508-64227527 None:intergenic 30.0%
AGAACATCCTCAAGTTTAAA+GGG - chr7_3:64227562-64227581 None:intergenic 30.0%
AAGAACATCCTCAAGTTTAA+AGG - chr7_3:64227563-64227582 None:intergenic 30.0%
ACAGATAAGAAAAACTAACC+AGG - chr7_3:64227610-64227629 None:intergenic 30.0%
ATAGCAATACGATAATGTCA+CGG - chr7_3:64227849-64227868 None:intergenic 30.0%
GAAATTGAACAATATTTGGG+TGG + chr7_3:64227870-64227889 Msa1116550:intron 30.0%
ATTTGGATGAGCATTTCAAA+TGG + chr7_3:64228101-64228120 Msa1116550:intron 30.0%
! AAACTGGCCTAATAGTAAAA+AGG - chr7_3:64228130-64228149 None:intergenic 30.0%
! AACTGGCCTAATATATAAAC+TGG - chr7_3:64228146-64228165 None:intergenic 30.0%
GTTTATATATTAGGCCAGTT+TGG + chr7_3:64228146-64228165 Msa1116550:intron 30.0%
ATCTCATGAAATTATGAGGT+AGG - chr7_3:64228256-64228275 None:intergenic 30.0%
!!! TGTTTTAATAAAAAGGTCGG+CGG - chr7_3:64228514-64228533 None:intergenic 30.0%
ATTGCATAGTGTTTCATGAA+AGG - chr7_3:64228632-64228651 None:intergenic 30.0%
!! ACTCAAAAGCTTTAGGAAAA+TGG - chr7_3:64228675-64228694 None:intergenic 30.0%
TGAAACAAGAAATTGTTGCT+TGG + chr7_3:64228713-64228732 Msa1116550:intron 30.0%
GCCTCATAATCAAATGTATA+AGG - chr7_3:64228784-64228803 None:intergenic 30.0%
TGATTATGAGGCTAACTTAA+TGG + chr7_3:64228792-64228811 Msa1116550:intron 30.0%
! GCTAGATTTTCATTGTGTTT+AGG + chr7_3:64228844-64228863 Msa1116550:intron 30.0%
! GTAAATGTGTTTTATCAGGA+AGG - chr7_3:64229077-64229096 None:intergenic 30.0%
AAAACAGCTAAATAAAAGCC+AGG - chr7_3:64229150-64229169 None:intergenic 30.0%
!!! TAGCTGTTTTGATCAAATCT+AGG + chr7_3:64229160-64229179 Msa1116550:CDS 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr7_3:64229480-64229499 None:intergenic 30.0%
! AGTGTGGTTTTCAAAGATGA+GGG - chr7_3:64226976-64226995 None:intergenic 35.0%
! TGTGGTTTGTATTGAAAACG+GGG - chr7_3:64227088-64227107 None:intergenic 35.0%
TTCAGGGAAATGGAATTAAG+GGG - chr7_3:64227127-64227146 None:intergenic 35.0%
GTTCAGGGAAATGGAATTAA+GGG - chr7_3:64227128-64227147 None:intergenic 35.0%
AGTTCAGGGAAATGGAATTA+AGG - chr7_3:64227129-64227148 None:intergenic 35.0%
! CATAAGATGCGTTTTCTTCA+GGG - chr7_3:64227222-64227241 None:intergenic 35.0%
! ACATAAGATGCGTTTTCTTC+AGG - chr7_3:64227223-64227242 None:intergenic 35.0%
! TGATGAGAATTCAAGGGTTT+TGG + chr7_3:64227330-64227349 Msa1116550:CDS 35.0%
! GAGTTTGTGGATTGTTTAGT+TGG + chr7_3:64227370-64227389 Msa1116550:CDS 35.0%
! TTTGTGGATTGTTTAGTTGG+TGG + chr7_3:64227373-64227392 Msa1116550:CDS 35.0%
AACTAACCAGGTGAACATTT+CGG - chr7_3:64227598-64227617 None:intergenic 35.0%
GGTGGTAGAGAAAGTAATAA+AGG + chr7_3:64227888-64227907 Msa1116550:intron 35.0%
TATGTGTTGTCAATCGGATA+TGG + chr7_3:64227956-64227975 Msa1116550:intron 35.0%
TGAAATGCTCATCCAAATGT+TGG - chr7_3:64228099-64228118 None:intergenic 35.0%
! ATGGCCTCCTTTTTACTATT+AGG + chr7_3:64228120-64228139 Msa1116550:intron 35.0%
AAGTCTTTGTAAGCATGTAC+AGG - chr7_3:64228299-64228318 None:intergenic 35.0%
CTTGATATTGTAGAGAGATG+CGG + chr7_3:64228419-64228438 Msa1116550:intron 35.0%
ACGTACTACTCAAAAGCTTT+AGG - chr7_3:64228682-64228701 None:intergenic 35.0%
! AGAGGTATAGAAGCATATAG+AGG - chr7_3:64228748-64228767 None:intergenic 35.0%
TTAGTGCGTGTTTGAATATG+CGG - chr7_3:64228914-64228933 None:intergenic 35.0%
!!! TTTTGGTTTTGACATGTAGG+TGG + chr7_3:64228970-64228989 Msa1116550:intron 35.0%
TGATTATCAGTCATCCACAA+GGG + chr7_3:64228998-64229017 Msa1116550:CDS 35.0%
GGTCAGAAATTACTACTTCT+GGG - chr7_3:64229056-64229075 None:intergenic 35.0%
AGGTCAGAAATTACTACTTC+TGG - chr7_3:64229057-64229076 None:intergenic 35.0%
!! ATGCAAATGGATTTTACACG+AGG - chr7_3:64229325-64229344 None:intergenic 35.0%
TCGTGTAAAATCCATTTGCA+TGG + chr7_3:64229324-64229343 Msa1116550:three_prime_UTR 35.0%
! TGTGGTTTTCAAAGATGAGG+GGG - chr7_3:64226974-64226993 None:intergenic 40.0%
! GTGTGGTTTTCAAAGATGAG+GGG - chr7_3:64226975-64226994 None:intergenic 40.0%
! GAGTGTGGTTTTCAAAGATG+AGG - chr7_3:64226977-64226996 None:intergenic 40.0%
! GTGGTTTGTATTGAAAACGG+GGG - chr7_3:64227087-64227106 None:intergenic 40.0%
TCAGGGAAATGGAATTAAGG+GGG - chr7_3:64227126-64227145 None:intergenic 40.0%
!!! GGATTTTGAGTTCAGGGAAA+TGG - chr7_3:64227137-64227156 None:intergenic 40.0%
TTTCTTCAGGGATTGAAGCT+GGG - chr7_3:64227210-64227229 None:intergenic 40.0%
! TTTTCTTCAGGGATTGAAGC+TGG - chr7_3:64227211-64227230 None:intergenic 40.0%
!!! TCAAGGGTTTTGGTTTCAAG+TGG + chr7_3:64227340-64227359 Msa1116550:CDS 40.0%
!! AAGTGGTTCTGAAGAGTTTG+TGG + chr7_3:64227357-64227376 Msa1116550:CDS 40.0%
!! TATTAAGTGTTGGCAAGGAG+AGG + chr7_3:64227471-64227490 Msa1116550:CDS 40.0%
TCAAGTTTAAAGGGCAAAGC+AGG - chr7_3:64227553-64227572 None:intergenic 40.0%
TGCTTTGCCCTTTAAACTTG+AGG + chr7_3:64227552-64227571 Msa1116550:CDS 40.0%
TGAGGATGTTCTTGCTTCAT+TGG + chr7_3:64227570-64227589 Msa1116550:CDS 40.0%
CAATTGTGAATCGCAGATTG+CGG + chr7_3:64227716-64227735 Msa1116550:intron 40.0%
TCGCAGATTGCGGAAAATAA+TGG + chr7_3:64227726-64227745 Msa1116550:intron 40.0%
AAAGTAGCAGTTCTGCTTAG+CGG - chr7_3:64227771-64227790 None:intergenic 40.0%
GTTCAAATTCCGCCAACATT+TGG + chr7_3:64228084-64228103 Msa1116550:intron 40.0%
AATGCTCATCCAAATGTTGG+CGG - chr7_3:64228096-64228115 None:intergenic 40.0%
CTGGCCTAATAGTAAAAAGG+AGG - chr7_3:64228127-64228146 None:intergenic 40.0%
GTTGAAATGCTCATCCAAAC+TGG - chr7_3:64228163-64228182 None:intergenic 40.0%
CAATTTAGACTGCGACAACA+AGG - chr7_3:64228488-64228507 None:intergenic 40.0%
GCATAGTGTTTCATGAAAGG+CGG - chr7_3:64228629-64228648 None:intergenic 40.0%
TAAGGTGCACTTTGTAGAAG+AGG - chr7_3:64228766-64228785 None:intergenic 40.0%
!! GTTTTGACATGTAGGTGGAA+GGG + chr7_3:64228975-64228994 Msa1116550:intron 40.0%
GTGATTATCAGTCATCCACA+AGG + chr7_3:64228997-64229016 Msa1116550:CDS 40.0%
TTCAGTATTTCTCTCCCTTG+TGG - chr7_3:64229015-64229034 None:intergenic 40.0%
AGCTGCTAATTCCTTTGATG+TGG + chr7_3:64229107-64229126 Msa1116550:CDS 40.0%
CACAAATTCAGCCACATCAA+AGG - chr7_3:64229121-64229140 None:intergenic 40.0%
CTTTGATGTGGCTGAATTTG+TGG + chr7_3:64229119-64229138 Msa1116550:CDS 40.0%
ATCCTTTCGAACACGCAATT+TGG + chr7_3:64229201-64229220 Msa1116550:three_prime_UTR 40.0%
AACCAAATTGCGTGTTCGAA+AGG - chr7_3:64229206-64229225 None:intergenic 40.0%
TTTCGAACACGCAATTTGGT+TGG + chr7_3:64229205-64229224 Msa1116550:three_prime_UTR 40.0%
CCATAGTGTTACCATGCAAA+TGG - chr7_3:64229338-64229357 None:intergenic 40.0%
CCATTTGCATGGTAACACTA+TGG + chr7_3:64229335-64229354 Msa1116550:three_prime_UTR 40.0%
! TGGTTTTCAAAGATGAGGGG+GGG - chr7_3:64226972-64226991 None:intergenic 45.0%
! GTGGTTTTCAAAGATGAGGG+GGG - chr7_3:64226973-64226992 None:intergenic 45.0%
!!! ACAGGGTTTTAGAGTGAGTG+TGG - chr7_3:64226992-64227011 None:intergenic 45.0%
GTTTGTATTGAAAACGGGGG+TGG - chr7_3:64227084-64227103 None:intergenic 45.0%
!! TTAAGGGGGTGGTGGAAAAT+GGG - chr7_3:64227112-64227131 None:intergenic 45.0%
!! ATTAAGGGGGTGGTGGAAAA+TGG - chr7_3:64227113-64227132 None:intergenic 45.0%
AAATGGAATTAAGGGGGTGG+TGG - chr7_3:64227120-64227139 None:intergenic 45.0%
TGGTCAGTGCTTGACTATAC+TGG + chr7_3:64227271-64227290 Msa1116550:CDS 45.0%
GTGTTGTCAATCGGATATGG+TGG + chr7_3:64227959-64227978 Msa1116550:intron 45.0%
ATGTGCCTCAATAGTGATCC+TGG + chr7_3:64228445-64228464 Msa1116550:intron 45.0%
ACTCTCCAGGATCACTATTG+AGG - chr7_3:64228453-64228472 None:intergenic 45.0%
TCAATAGTGATCCTGGAGAG+TGG + chr7_3:64228452-64228471 Msa1116550:intron 45.0%
GTATATTGTCTCCACTCTCC+AGG - chr7_3:64228466-64228485 None:intergenic 45.0%
!! GGTTTTGACATGTAGGTGGA+AGG + chr7_3:64228974-64228993 Msa1116550:intron 45.0%
GCTGAATTTGTGGATGAACC+TGG + chr7_3:64229129-64229148 Msa1116550:CDS 45.0%
TTTCAAAGATGAGGGGGGGT+CGG - chr7_3:64226968-64226987 None:intergenic 50.0%
!! TGGTGGTGGTGTGAGAATGA+AGG - chr7_3:64227050-64227069 None:intergenic 50.0%
TGGTGGAATTTGCATGGTGG+TGG - chr7_3:64227064-64227083 None:intergenic 50.0%
TGTATTGAAAACGGGGGTGG+TGG - chr7_3:64227081-64227100 None:intergenic 50.0%
GGGAAATGGAATTAAGGGGG+TGG - chr7_3:64227123-64227142 None:intergenic 50.0%
TTGGCTCCGAAATGTTCACC+TGG + chr7_3:64227589-64227608 Msa1116550:CDS 50.0%
! TCGGACACAATGAGCCCTTT+TGG - chr7_3:64228541-64228560 None:intergenic 50.0%
GTGCGTGTTTGAATATGCGG+TGG - chr7_3:64228911-64228930 None:intergenic 50.0%
TTCAAAGATGAGGGGGGGTC+GGG - chr7_3:64226967-64226986 None:intergenic 55.0%
!! GGGTGGTGGAATTTGCATGG+TGG - chr7_3:64227067-64227086 None:intergenic 55.0%
!! GGGTGGTGGAAAATGGGTTG+TGG - chr7_3:64227106-64227125 None:intergenic 55.0%
!! CGGGGGTGGTGGAATTTGCA+TGG - chr7_3:64227070-64227089 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64226926 64229521 64226926 ID=Msa1116550;Name=Msa1116550
chr7_3 mRNA 64226926 64229521 64226926 ID=Msa1116550-mRNA-1;Parent=Msa1116550;Name=Msa1116550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=99|1|1|1|1|1|2|333|261
chr7_3 exon 64226926 64227610 64226926 ID=Msa1116550-mRNA-1:exon:15179;Parent=Msa1116550-mRNA-1
chr7_3 exon 64228989 64229521 64228989 ID=Msa1116550-mRNA-1:exon:15180;Parent=Msa1116550-mRNA-1
chr7_3 five_prime_UTR 64226926 64227024 64226926 ID=Msa1116550-mRNA-1:five_prime_utr;Parent=Msa1116550-mRNA-1
chr7_3 CDS 64227025 64227610 64227025 ID=Msa1116550-mRNA-1:cds;Parent=Msa1116550-mRNA-1
chr7_3 CDS 64228989 64229188 64228989 ID=Msa1116550-mRNA-1:cds;Parent=Msa1116550-mRNA-1
chr7_3 three_prime_UTR 64229189 64229521 64229189 ID=Msa1116550-mRNA-1:three_prime_utr;Parent=Msa1116550-mRNA-1
Gene Sequence

>Msa1116550

ATGAATTCATCTTCTTTAGCTTCCTTCATTCTCACACCACCACCATGCAAATTCCACCACCCCCGTTTTCAATACAAACCACAACCCATTTTCCACCACCCCCTTAATTCCATTTCCCTGAACTCAAAATCCAATTTTTCTACTTCACTTCAAACCCTCAAATCATCATCAAATCTCAATAACCCAGCTTCAATCCCTGAAGAAAACGCATCTTATGTCGCTGTTGAAGAATTCATCGACAAAGATTGGTCAGTGCTTGACTATACTGGACCAAACATTGACCGTATTATATCATCTGGGAAAATTGATGAGAATTCAAGGGTTTTGGTTTCAAGTGGTTCTGAAGAGTTTGTGGATTGTTTAGTTGGTGGTTCTAAATTCAAGTCTATGCTTGTTCTTCATGACTCACTTTTGATATTGGCTCTTCTTATTGAGAAATATGATAATATTAAGTGTTGGCAAGGAGAGGTTACTATTGTTCCTAAAAAATGGTCTCCTTTTGATGTTGTGTTTCTTTATTTTTTGCCTGCTTTGCCCTTTAAACTTGAGGATGTTCTTGCTTCATTGGCTCCGAAATGTTCACCTGGTGGAAGGGTGATTATCAGTCATCCACAAGGGAGAGAAATACTGAAACAGCAACGACAACAGTACCCAGAAGTAGTAATTTCTGACCTTCCTGATAAAACACATTTACAAAGTGTTGCAGCTGCTAATTCCTTTGATGTGGCTGAATTTGTGGATGAACCTGGCTTTTATTTAGCTGTTTTGATCAAATCTAGGAATTAA
Protein sequence

>Msa1116550

MNSSSLASFILTPPPCKFHHPRFQYKPQPIFHHPLNSISLNSKSNFSTSLQTLKSSSNLNNPASIPEENASYVAVEEFIDKDWSVLDYTGPNIDRIISSGKIDENSRVLVSSGSEEFVDCLVGGSKFKSMLVLHDSLLILALLIEKYDNIKCWQGEVTIVPKKWSPFDVVFLYFLPALPFKLEDVLASLAPKCSPGGRVIISHPQGREILKQQRQQYPEVVISDLPDKTHLQSVAAANSFDVAEFVDEPGFYLAVLIKSRN*