AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0487770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487770 MtrunA17_Chr3g0077331 94.118 527 18 5 58 579 65 583 0.0 955
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487770 AT1G72040.1 60.136 587 192 13 4 573 15 576 0.0 657

Find 176 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTATTTATTAGTATT+TGG 0.110010 3_4:-6907560 None:intergenic
ATCCTTGCTGAAATCAATAT+TGG 0.197353 3_4:-6910087 None:intergenic
CTGTAACGTTGCGTCGCTTT+TGG 0.214302 3_4:-6907723 None:intergenic
CCTGATTTGTTGGCTATTCC+TGG 0.217222 3_4:+6908331 Msa0487770:CDS
CTACTTGGTTTGTATTTCTT+TGG 0.242702 3_4:+6911954 Msa0487770:three_prime_UTR
TATTACTAGTGTGGCGTGTT+AGG 0.243446 3_4:-6908078 None:intergenic
GTAAAGTTGGTAGTTATTTA+TGG 0.253552 3_4:+6911901 Msa0487770:three_prime_UTR
CTTCATCTTTCAGACTTAAT+AGG 0.255349 3_4:+6908275 Msa0487770:CDS
TAATTTATTTATTAGTATTT+GGG 0.272393 3_4:-6907559 None:intergenic
GTAGTAATCTGTTGTTGTTC+AGG 0.276506 3_4:-6908184 None:intergenic
ATATAAAACCATCGGGAATA+AGG 0.284820 3_4:-6909693 None:intergenic
CAAAAGCGACGCAACGTTAC+AGG 0.285114 3_4:+6907724 Msa0487770:five_prime_UTR
TCCTTAACTTCATTCTTTGA+TGG 0.286569 3_4:-6909741 None:intergenic
TAGTGTGGCGTGTTAGGGTT+AGG 0.287620 3_4:-6908072 None:intergenic
ATTCTTTGATGGCAAGTATC+AGG 0.291458 3_4:-6909730 None:intergenic
AATACACGGTCTCTTATATC+AGG 0.292967 3_4:-6909910 None:intergenic
GCAGCACCTGTGGTTGGTTC+TGG 0.301226 3_4:-6911680 None:intergenic
ATCTAGTCCTCCTGATTTGT+TGG 0.334574 3_4:+6908321 Msa0487770:CDS
TGCCACTTGCCAATTGGTTC+AGG 0.335895 3_4:-6909168 None:intergenic
CTTTCTCTGTGAATTTGAAA+AGG 0.346959 3_4:+6907505 Msa0487770:five_prime_UTR
CTCCATCTCATTCATCCAAT+TGG 0.351738 3_4:-6909620 None:intergenic
CTATTCCTGGTGTGGGTCCC+AGG 0.363835 3_4:+6908344 Msa0487770:CDS
TTCTGAAGTCCAAGGGTGGC+CGG 0.369193 3_4:-6911749 None:intergenic
ACGCAGTTCAATAGTTTCAT+TGG 0.370500 3_4:-6909127 None:intergenic
GAATGAAAGAAGAAGGGTTT+AGG 0.370611 3_4:-6907887 None:intergenic
CATCAAGCCTCTTCGATTGA+TGG 0.372708 3_4:+6909317 Msa0487770:CDS
TTCCTCTTCCTCTTCCTCTT+CGG 0.384223 3_4:+6908228 Msa0487770:CDS
TACTCCATGATTACCACTTT+GGG 0.385460 3_4:-6909842 None:intergenic
TATTTCTTTGGTTACAAAGA+TGG 0.388884 3_4:+6911966 Msa0487770:three_prime_UTR
ACGAGGAGAAGAAGAAGAAA+AGG 0.390707 3_4:-6908008 None:intergenic
TAGTAATCTGTTGTTGTTCA+GGG 0.394332 3_4:-6908183 None:intergenic
CCTGTTGTGTCTACCTTGCC+TGG 0.402035 3_4:+6909670 Msa0487770:CDS
GCCATCAAAGAATGAAGTTA+AGG 0.403313 3_4:+6909740 Msa0487770:CDS
TCCTTGCTGAAATCAATATT+GGG 0.404770 3_4:-6910086 None:intergenic
TCTGAAGTCCAAGGGTGGCC+GGG 0.405588 3_4:-6911748 None:intergenic
TGAAGTTGTGTTTGTAGAAG+AGG 0.408467 3_4:-6908257 None:intergenic
GTGAAGAGGTTGGGCGGTGA+AGG 0.412419 3_4:-6907817 None:intergenic
ATTACTAGTGTGGCGTGTTA+GGG 0.417789 3_4:-6908077 None:intergenic
TAAAGAAGAATGAAAGAAGA+AGG 0.420561 3_4:-6907894 None:intergenic
AGATAAGCATTTATGACTCT+TGG 0.422063 3_4:+6909641 Msa0487770:CDS
TGGTTGTCAAATACTTCGTT+AGG 0.422519 3_4:+6911921 Msa0487770:three_prime_UTR
TACTTTCAGCATGGTTCTTG+TGG 0.426754 3_4:-6908963 None:intergenic
CTGAAGTCCAAGGGTGGCCG+GGG 0.427190 3_4:-6911747 None:intergenic
TTTCTCTGTGAATTTGAAAA+GGG 0.427497 3_4:+6907506 Msa0487770:five_prime_UTR
TGGTAATCATGGAGTATTAT+CGG 0.432768 3_4:+6909849 Msa0487770:CDS
ATTTGATACCTTCTGAATGC+TGG 0.433730 3_4:-6909959 None:intergenic
ACATCCTGCCACTTGCCAAT+TGG 0.441088 3_4:-6909174 None:intergenic
ATAGTTATCTTACTCCCTCT+TGG 0.449688 3_4:-6910117 None:intergenic
GAAGTGGATGATAATTCCTC+TGG 0.451397 3_4:+6909018 Msa0487770:CDS
CTCGTTCAGAAAGGTATTCA+AGG 0.453440 3_4:+6908379 Msa0487770:CDS
CCCTCCCAAAGTGGTAATCA+TGG 0.459472 3_4:+6909838 Msa0487770:CDS
CCAGGAATAGCCAACAAATC+AGG 0.460862 3_4:-6908331 None:intergenic
TTGTGTTGGGTGCAGTTCAT+TGG 0.461411 3_4:+6908889 Msa0487770:intron
ATACTCCATGATTACCACTT+TGG 0.465554 3_4:-6909843 None:intergenic
ATGTTTAGTTTGATTACAAA+CGG 0.469477 3_4:+6912050 Msa0487770:three_prime_UTR
TGAAAGAAGAAGGGTTTAGG+AGG 0.471130 3_4:-6907884 None:intergenic
CGACTTACGTTCTGTGTTGA+GGG 0.471827 3_4:+6909063 Msa0487770:CDS
CACAGAGAAAGAGAGACAAA+AGG 0.473624 3_4:-6907493 None:intergenic
AACTGGAAAGGAAAGGAGAA+AGG 0.474602 3_4:-6907635 None:intergenic
GAGCTGTTCATGAAGCCAAT+TGG 0.476172 3_4:+6909605 Msa0487770:CDS
CACAAGGAAGTGAAGAGGTT+GGG 0.480683 3_4:-6907826 None:intergenic
GTGGCTGATAACATTGTGAT+TGG 0.480704 3_4:+6911796 Msa0487770:exon
ACAGAGAAAGAGAGACAAAA+GGG 0.483634 3_4:-6907492 None:intergenic
CCAGGCAAGGTAGACACAAC+AGG 0.485266 3_4:-6909670 None:intergenic
ACTTAATAGGAGGCAGCAAA+AGG 0.487993 3_4:+6908288 Msa0487770:CDS
AAGAAGAAGGGTTTAGGAGG+GGG 0.489403 3_4:-6907881 None:intergenic
ATTTGTTACCAGGGTGATGC+AGG 0.492135 3_4:+6909275 Msa0487770:CDS
TTGTTGGCTATTCCTGGTGT+GGG 0.492293 3_4:+6908337 Msa0487770:CDS
ACTGGAAAGGAAAGGAGAAA+GGG 0.498574 3_4:-6907634 None:intergenic
AAAGAAGAATGAAAGAAGAA+GGG 0.498651 3_4:-6907893 None:intergenic
TGCCGAAGAGGAAGAGGAAG+AGG 0.499740 3_4:-6908230 None:intergenic
AAAACTACGTATTTGTTACC+AGG 0.500178 3_4:+6909265 Msa0487770:CDS
CATGATTACCACTTTGGGAG+GGG 0.501556 3_4:-6909837 None:intergenic
GAAGGTAACCTGTGGCTACC+AGG 0.503200 3_4:+6911711 Msa0487770:CDS
TTGCCTGGCCTTATTCCCGA+TGG 0.503417 3_4:+6909685 Msa0487770:CDS
GGAAGATGCCGAAGAGGAAG+AGG 0.503537 3_4:-6908236 None:intergenic
CTGAGATATATAAAACCATC+GGG 0.503584 3_4:-6909700 None:intergenic
AGTGTGGCGTGTTAGGGTTA+GGG 0.503961 3_4:-6908071 None:intergenic
AGGGCAATGTCATATATGTC+TGG 0.506658 3_4:+6911771 Msa0487770:CDS
AGAGGAAGAGGAAGAGGAAG+AGG 0.507796 3_4:-6908224 None:intergenic
GAGTATCTGCAGAGCTCTGT+TGG 0.508549 3_4:+6908934 Msa0487770:CDS
CAAACAACTCTACAAAGATA+AGG 0.510054 3_4:+6908414 Msa0487770:CDS
TCGAGGATATTGAAGTGGTC+AGG 0.510445 3_4:-6909201 None:intergenic
TTCAGAAAACTCGTTCAGAA+AGG 0.510465 3_4:+6908370 Msa0487770:CDS
GTAGTAGTAGTGGCGGGTGC+AGG 0.511213 3_4:-6907923 None:intergenic
TGAACCAATTGGCAAGTGGC+AGG 0.513776 3_4:+6909170 Msa0487770:CDS
GCGACTTACGTTCTGTGTTG+AGG 0.517675 3_4:+6909062 Msa0487770:CDS
TTGGGATGAAGATATACTAA+TGG 0.519523 3_4:+6911815 Msa0487770:three_prime_UTR
TTTGTTGGCTATTCCTGGTG+TGG 0.521990 3_4:+6908336 Msa0487770:CDS
GGCCACCCTTGGACTTCAGA+AGG 0.524399 3_4:+6911751 Msa0487770:CDS
ATTGGCAAGTGGCAGGATGT+TGG 0.525269 3_4:+6909177 Msa0487770:CDS
GCTTTCCACCTGGTAGCCAC+AGG 0.526799 3_4:-6911719 None:intergenic
TTTCATTGGCTATTCTCTGA+AGG 0.528274 3_4:-6909113 None:intergenic
AGGAAGAGAGAAGAAGAAGG+TGG 0.532736 3_4:+6909760 Msa0487770:CDS
GACCTTGACTGATGTAAAGT+TGG 0.534462 3_4:+6911888 Msa0487770:three_prime_UTR
CAGGAAAGAGAGTCTTCTGC+TGG 0.536413 3_4:+6909294 Msa0487770:CDS
TATCGAGAACAGCGCAGCCA+AGG 0.537815 3_4:+6907596 Msa0487770:five_prime_UTR
AGAAGAAGAAGTAGTAGTAG+TGG 0.537877 3_4:-6907933 None:intergenic
TTAGGTGCTACTAGACTACT+TGG 0.540120 3_4:+6911939 Msa0487770:three_prime_UTR
GAGGTAGCAGCACCTGTGGT+TGG 0.542702 3_4:-6911686 None:intergenic
AGAAGAAGTAGTAGTAGTGG+CGG 0.545454 3_4:-6907930 None:intergenic
TGGCGTGTTAGGGTTAGGGT+TGG 0.549804 3_4:-6908067 None:intergenic
AAATTCCTGGGACCCACACC+AGG 0.550512 3_4:-6908349 None:intergenic
AAACCATCGGGAATAAGGCC+AGG 0.553177 3_4:-6909688 None:intergenic
CATCTTTCAGACTTAATAGG+AGG 0.553857 3_4:+6908278 Msa0487770:CDS
CAAGGATATTGAAGCCAAGA+GGG 0.554039 3_4:+6910103 Msa0487770:CDS
TCCATGATTACCACTTTGGG+AGG 0.557575 3_4:-6909839 None:intergenic
CAGCGCAGCCAAGGGTACAC+AGG 0.559968 3_4:+6907605 Msa0487770:five_prime_UTR
TGGCTGATAACATTGTGATT+GGG 0.564256 3_4:+6911797 Msa0487770:exon
TTAAGGAAGAGAGAAGAAGA+AGG 0.564660 3_4:+6909757 Msa0487770:CDS
AAAGAGTGTTGATGAAGAAG+TGG 0.565992 3_4:+6909002 Msa0487770:CDS
TGGCAAATCTAGTGATCAGA+TGG 0.567752 3_4:+6908909 Msa0487770:CDS
GCACAAGGAAGTGAAGAGGT+TGG 0.571132 3_4:-6907827 None:intergenic
GGAGGTCGCGGAGATACTCT+AGG 0.573426 3_4:-6909789 None:intergenic
CCATGATTACCACTTTGGGA+GGG 0.576142 3_4:-6909838 None:intergenic
TAAAGAGTTGTCGACATGGA+GGG 0.578148 3_4:-6909884 None:intergenic
TCTGAGATATATAAAACCAT+CGG 0.581306 3_4:-6909701 None:intergenic
ATGTCATATATGTCTGGTAG+TGG 0.582072 3_4:+6911777 Msa0487770:CDS
AAAGAAGAAGGGTTTAGGAG+GGG 0.582496 3_4:-6907882 None:intergenic
CATTGCCCTTCTGAAGTCCA+AGG 0.584988 3_4:-6911757 None:intergenic
GCCACCCTTGGACTTCAGAA+GGG 0.586571 3_4:+6911752 Msa0487770:CDS
GAGGTGGTTCCTGAACCAAT+TGG 0.589076 3_4:+6909159 Msa0487770:CDS
AAAGAGTTGTCGACATGGAG+GGG 0.589208 3_4:-6909883 None:intergenic
GAAGAAGTAGTAGTAGTGGC+GGG 0.590829 3_4:-6907929 None:intergenic
GAAAGAAGAAGGGTTTAGGA+GGG 0.592426 3_4:-6907883 None:intergenic
AGCCTCTTCGATTGATGGAG+AGG 0.592683 3_4:+6909322 Msa0487770:CDS
TCCACGAAAAGCATGAGAGC+TGG 0.595770 3_4:+6909809 Msa0487770:CDS
ATCGGGAATAAGGCCAGGCA+AGG 0.595930 3_4:-6909683 None:intergenic
CTCTCTTTCCTGCATCACCC+TGG 0.596005 3_4:-6909283 None:intergenic
AGCCAATTGGATGAATGAGA+TGG 0.598931 3_4:+6909618 Msa0487770:CDS
CAGGTGCTGCTACCTCATGA+AGG 0.601758 3_4:+6911693 Msa0487770:CDS
CTCCTCTCCATCAATCGAAG+AGG 0.603846 3_4:-6909324 None:intergenic
GAATGTTTAAGAAGTAGCCA+TGG 0.606023 3_4:-6908118 None:intergenic
ATCGAGAACAGCGCAGCCAA+GGG 0.606776 3_4:+6907597 Msa0487770:five_prime_UTR
GTTTAAGAAGTAGCCATGGA+AGG 0.609586 3_4:-6908114 None:intergenic
CATGCATTCCAGCATTCAGA+AGG 0.612913 3_4:+6909951 Msa0487770:CDS
AGAAGAGGAAGATGCCGAAG+AGG 0.612915 3_4:-6908242 None:intergenic
CAGGTGGAAAGCCTTTCCCC+CGG 0.613517 3_4:+6911730 Msa0487770:CDS
TCATGAGGTAGCAGCACCTG+TGG 0.616247 3_4:-6911690 None:intergenic
TAAGAAGTAGCCATGGAAGG+TGG 0.617123 3_4:-6908111 None:intergenic
AAGTGGATGATAATTCCTCT+GGG 0.617994 3_4:+6909019 Msa0487770:CDS
TCACAGTCTAGAATCAATGC+AGG 0.618620 3_4:-6910062 None:intergenic
TACCAACTTTACATCAGTCA+AGG 0.621768 3_4:-6911890 None:intergenic
AAACTACGTATTTGTTACCA+GGG 0.623005 3_4:+6909266 Msa0487770:CDS
GTAAGTCGCTTCTTCTGCAT+AGG 0.624407 3_4:-6909048 None:intergenic
AAGCGTCGAGGATATTGAAG+TGG 0.625091 3_4:-6909206 None:intergenic
TGGTTATTCCCCTCCCAAAG+TGG 0.626744 3_4:+6909829 Msa0487770:CDS
CAGCAAGTTCTATCTGTCGA+AGG 0.626856 3_4:+6911645 Msa0487770:CDS
ATACACGGTCTCTTATATCA+GGG 0.627573 3_4:-6909909 None:intergenic
AACAGCACAAGGAAGTGAAG+AGG 0.634339 3_4:-6907831 None:intergenic
CACCCTCGAGATAAAATACA+CGG 0.637012 3_4:-6909924 None:intergenic
AAGTAGTTATACTTTCAGCA+TGG 0.639328 3_4:-6908972 None:intergenic
GCCCTTCTGAAGTCCAAGGG+TGG 0.642155 3_4:-6911753 None:intergenic
TGAAGTCCAAGGGTGGCCGG+GGG 0.643695 3_4:-6911746 None:intergenic
ATTGCCCTTCTGAAGTCCAA+GGG 0.645360 3_4:-6911756 None:intergenic
GCAAGGATATTGAAGCCAAG+AGG 0.646490 3_4:+6910102 Msa0487770:CDS
GGTGTAAAGAGTTGTCGACA+TGG 0.647270 3_4:-6909888 None:intergenic
ACCCAATATTGATTTCAGCA+AGG 0.647767 3_4:+6910085 Msa0487770:CDS
AGCCACAGGTTACCTTCATG+AGG 0.659085 3_4:-6911705 None:intergenic
TTCCTGAACCAATTGGCAAG+TGG 0.660138 3_4:+6909166 Msa0487770:CDS
ACTGCGTGATCTCGTCGAGG+TGG 0.663093 3_4:+6909143 Msa0487770:CDS
GTTGAGGGTAATATCAGTGT+TGG 0.665129 3_4:+6909078 Msa0487770:CDS
AAATAGCCAGAACCAACCAC+AGG 0.667625 3_4:+6911674 Msa0487770:CDS
AAGGAAGTGAAGAGGTTGGG+CGG 0.672128 3_4:-6907823 None:intergenic
GGGGTGGAAATAACAGCACA+AGG 0.681411 3_4:-6907842 None:intergenic
TCTGAATGCTGGAATGCATG+TGG 0.686716 3_4:-6909948 None:intergenic
GTAAAGAGTTGTCGACATGG+AGG 0.688565 3_4:-6909885 None:intergenic
GGAATAGCCAACAAATCAGG+AGG 0.689568 3_4:-6908328 None:intergenic
AAAACATGAACACATAAACA+AGG 0.693143 3_4:-6911840 None:intergenic
ACAGATTACTACAACAACAG+AGG 0.696495 3_4:+6908195 Msa0487770:CDS
TGAACTGCGTGATCTCGTCG+AGG 0.698431 3_4:+6909140 Msa0487770:CDS
CTGCATAGGCTGCTTCCCAG+AGG 0.699038 3_4:-6909034 None:intergenic
TACCTCATGAAGGTAACCTG+TGG 0.701825 3_4:+6911703 Msa0487770:CDS
AAGGTGTATGCATACCTCTG+TGG 0.702954 3_4:-6909240 None:intergenic
GGTAACCTGTGGCTACCAGG+TGG 0.705128 3_4:+6911714 Msa0487770:CDS
TAAGAAGCATTAGAATAACG+AGG 0.743544 3_4:-6908025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATATTAACAC+TGG + chr3_4:6911285-6911304 Msa0487770:intron 10.0%
!!! TTTGATTTTCTAATACAAAA+TGG + chr3_4:6908838-6908857 Msa0487770:intron 15.0%
!!! AATTACTTTTAATTACAAAC+AGG + chr3_4:6910037-6910056 Msa0487770:intron 15.0%
!!! ATTATGATTTTTATTATCCT+TGG + chr3_4:6910224-6910243 Msa0487770:intron 15.0%
!! AAAAGACAATTTACTTATTA+GGG - chr3_4:6911562-6911581 None:intergenic 15.0%
!! AAAAAGACAATTTACTTATT+AGG - chr3_4:6911563-6911582 None:intergenic 15.0%
!! AAATGTACCAATATTACAAA+GGG - chr3_4:6908710-6908729 None:intergenic 20.0%
!! TAAATGTACCAATATTACAA+AGG - chr3_4:6908711-6908730 None:intergenic 20.0%
!! CTTTGTATTAGAAAATCAAA+TGG - chr3_4:6908805-6908824 None:intergenic 20.0%
!!! TTTGATTTTCTAATACAAAG+TGG + chr3_4:6908805-6908824 Msa0487770:intron 20.0%
!! TTGAAGAAAAAATGTTGTAT+TGG - chr3_4:6909442-6909461 None:intergenic 20.0%
!!! ATGTTTTGAGAGTTTAAAAA+AGG + chr3_4:6909536-6909555 Msa0487770:intron 20.0%
!! TCTGATTATTATATCTTTGT+TGG + chr3_4:6910249-6910268 Msa0487770:intron 20.0%
!! CTGATTATTATATCTTTGTT+GGG + chr3_4:6910250-6910269 Msa0487770:intron 20.0%
!!! TTTTGAATCTTTTGATTGTA+TGG + chr3_4:6910560-6910579 Msa0487770:intron 20.0%
!!! ATAAAATGGTGTTTTGATTT+GGG - chr3_4:6910796-6910815 None:intergenic 20.0%
!!! TTCTTTTAGTTGTAAATAGT+AGG + chr3_4:6910995-6911014 Msa0487770:intron 20.0%
!! AGCTAAAATTATTTACTTTC+AGG - chr3_4:6911203-6911222 None:intergenic 20.0%
!! TCTTTAATTAGTAAAGTTCT+TGG + chr3_4:6911451-6911470 Msa0487770:intron 20.0%
!!! ATGTTTAGTTTGATTACAAA+CGG + chr3_4:6912050-6912069 Msa0487770:three_prime_UTR 20.0%
! TTTCTCTGTGAATTTGAAAA+GGG + chr3_4:6907506-6907525 Msa0487770:five_prime_UTR 25.0%
! TTCTAATAAACCTCAAAAAC+TGG - chr3_4:6907655-6907674 None:intergenic 25.0%
! AAAGAAGAATGAAAGAAGAA+GGG - chr3_4:6907896-6907915 None:intergenic 25.0%
! TAAAGAAGAATGAAAGAAGA+AGG - chr3_4:6907897-6907916 None:intergenic 25.0%
!!! CTTTACTATCTTCTGTTTTT+GGG + chr3_4:6908488-6908507 Msa0487770:intron 25.0%
! GAAATTAAATGATGTCCTAA+GGG - chr3_4:6908573-6908592 None:intergenic 25.0%
! TGAAATTAAATGATGTCCTA+AGG - chr3_4:6908574-6908593 None:intergenic 25.0%
! ATTATAGCAAACAGTCATTT+GGG - chr3_4:6908769-6908788 None:intergenic 25.0%
! TATTATAGCAAACAGTCATT+TGG - chr3_4:6908770-6908789 None:intergenic 25.0%
!!! AACAAATACGTAGTTTTGAA+AGG - chr3_4:6909262-6909281 None:intergenic 25.0%
! CACACAAGAATATGAAAAAA+TGG - chr3_4:6909384-6909403 None:intergenic 25.0%
!! TCTGAGATATATAAAACCAT+CGG - chr3_4:6909704-6909723 None:intergenic 25.0%
! AAAATCGTAAAATCAGACAT+GGG - chr3_4:6909993-6910012 None:intergenic 25.0%
! AAAAATCGTAAAATCAGACA+TGG - chr3_4:6909994-6910013 None:intergenic 25.0%
! TTGTTAAAATTTACGTGACA+TGG + chr3_4:6910157-6910176 Msa0487770:intron 25.0%
! ATAAATCTTGAGTCCTTTAT+TGG + chr3_4:6910584-6910603 Msa0487770:intron 25.0%
! TGATACAAATAACTTCGTAT+GGG - chr3_4:6910622-6910641 None:intergenic 25.0%
! TTGATACAAATAACTTCGTA+TGG - chr3_4:6910623-6910642 None:intergenic 25.0%
! GAAGTTATTTGTATCAACTT+AGG + chr3_4:6910626-6910645 Msa0487770:intron 25.0%
!!! TAAAATGGTGTTTTGATTTG+GGG - chr3_4:6910795-6910814 None:intergenic 25.0%
!!! CATAAAATGGTGTTTTGATT+TGG - chr3_4:6910797-6910816 None:intergenic 25.0%
!! AGTTCACTGTTTTACTTTAA+TGG - chr3_4:6910844-6910863 None:intergenic 25.0%
! ATTAAAGTAAAACAGTGAAC+TGG + chr3_4:6910843-6910862 Msa0487770:intron 25.0%
! AGTCATCTTCTCATTATTTA+AGG + chr3_4:6910896-6910915 Msa0487770:intron 25.0%
! GTCATCTTCTCATTATTTAA+GGG + chr3_4:6910897-6910916 Msa0487770:intron 25.0%
! TCATCTTCTCATTATTTAAG+GGG + chr3_4:6910898-6910917 Msa0487770:intron 25.0%
!! AAAGATGTTTGACTTATAGA+TGG - chr3_4:6911051-6911070 None:intergenic 25.0%
! ACTTAAATCTCTTAAAGCAA+TGG - chr3_4:6911088-6911107 None:intergenic 25.0%
!!! ATTGCTTTAAGAGATTTAAG+TGG + chr3_4:6911087-6911106 Msa0487770:intron 25.0%
! TATTATTAGTCACACTGAAA+GGG - chr3_4:6911240-6911259 None:intergenic 25.0%
! TTATTATTAGTCACACTGAA+AGG - chr3_4:6911241-6911260 None:intergenic 25.0%
!! TAGTTTAACTTAACACATAG+TGG - chr3_4:6911526-6911545 None:intergenic 25.0%
! ACAATTTACTTATTAGGGAA+CGG - chr3_4:6911557-6911576 None:intergenic 25.0%
!!! TGTCTTTTTTGTTTTGTGTA+TGG + chr3_4:6911574-6911593 Msa0487770:intron 25.0%
! AAAACATGAACACATAAACA+AGG - chr3_4:6911843-6911862 None:intergenic 25.0%
!!! TGCATGTAAAGATTTTAACT+CGG + chr3_4:6911866-6911885 Msa0487770:three_prime_UTR 25.0%
!!! GTAAAGTTGGTAGTTATTTA+TGG + chr3_4:6911901-6911920 Msa0487770:three_prime_UTR 25.0%
! TATTTCTTTGGTTACAAAGA+TGG + chr3_4:6911966-6911985 Msa0487770:three_prime_UTR 25.0%
CTTTCTCTGTGAATTTGAAA+AGG + chr3_4:6907505-6907524 Msa0487770:five_prime_UTR 30.0%
ATAAACCTCAAAAACTGGAA+AGG - chr3_4:6907650-6907669 None:intergenic 30.0%
!! TAAGAAGCATTAGAATAACG+AGG - chr3_4:6908028-6908047 None:intergenic 30.0%
!!! TTTTGGTGTTATTACTAGTG+TGG - chr3_4:6908090-6908109 None:intergenic 30.0%
! TAGTAATCTGTTGTTGTTCA+GGG - chr3_4:6908186-6908205 None:intergenic 30.0%
CTTCATCTTTCAGACTTAAT+AGG + chr3_4:6908275-6908294 Msa0487770:CDS 30.0%
CAAACAACTCTACAAAGATA+AGG + chr3_4:6908414-6908433 Msa0487770:CDS 30.0%
! GCTTTACTATCTTCTGTTTT+TGG + chr3_4:6908487-6908506 Msa0487770:intron 30.0%
CGTGTTAGTAATTTCATGAA+AGG + chr3_4:6908515-6908534 Msa0487770:intron 30.0%
ATTTCATGAAAGGACACATT+TGG + chr3_4:6908525-6908544 Msa0487770:intron 30.0%
TTTCATGAAAGGACACATTT+GGG + chr3_4:6908526-6908545 Msa0487770:intron 30.0%
TTCCTTAAACAATTCCCTTA+GGG + chr3_4:6908669-6908688 Msa0487770:intron 30.0%
!! AAAGTTTTGACCTTTGTGTT+GGG + chr3_4:6908876-6908895 Msa0487770:intron 30.0%
AAGTAGTTATACTTTCAGCA+TGG - chr3_4:6908975-6908994 None:intergenic 30.0%
! AAAACTACGTATTTGTTACC+AGG + chr3_4:6909265-6909284 Msa0487770:CDS 30.0%
! AAACTACGTATTTGTTACCA+GGG + chr3_4:6909266-6909285 Msa0487770:CDS 30.0%
! AATGTTGTATTGGCATGAAA+AGG - chr3_4:6909432-6909451 None:intergenic 30.0%
!!! CATTTTTTCTTCAAACGTGT+TGG + chr3_4:6909448-6909467 Msa0487770:intron 30.0%
ATTTATTTCCTTTCCCTGTT+TGG + chr3_4:6909484-6909503 Msa0487770:intron 30.0%
ATCTCAAATCAAACCAAACA+GGG - chr3_4:6909500-6909519 None:intergenic 30.0%
AATCTCAAATCAAACCAAAC+AGG - chr3_4:6909501-6909520 None:intergenic 30.0%
!! TGGTTTGATTTGAGATTAAC+AGG + chr3_4:6909504-6909523 Msa0487770:intron 30.0%
AATCTCACTGTGTTCAATAA+AGG + chr3_4:6909573-6909592 Msa0487770:intron 30.0%
AGATAAGCATTTATGACTCT+TGG + chr3_4:6909641-6909660 Msa0487770:CDS 30.0%
ATATAAAACCATCGGGAATA+AGG - chr3_4:6909696-6909715 None:intergenic 30.0%
CTGAGATATATAAAACCATC+GGG - chr3_4:6909703-6909722 None:intergenic 30.0%
TCCTTAACTTCATTCTTTGA+TGG - chr3_4:6909744-6909763 None:intergenic 30.0%
! TGGTAATCATGGAGTATTAT+CGG + chr3_4:6909849-6909868 Msa0487770:CDS 30.0%
!! CATTCAGAAGGTATCAAATT+TGG + chr3_4:6909963-6909982 Msa0487770:intron 30.0%
TCCTTGCTGAAATCAATATT+GGG - chr3_4:6910089-6910108 None:intergenic 30.0%
ATCCTTGCTGAAATCAATAT+TGG - chr3_4:6910090-6910109 None:intergenic 30.0%
GATATAATAATCAGACTCCA+AGG - chr3_4:6910244-6910263 None:intergenic 30.0%
TTATTATATCTTTGTTGGGC+TGG + chr3_4:6910254-6910273 Msa0487770:intron 30.0%
TATTATATCTTTGTTGGGCT+GGG + chr3_4:6910255-6910274 Msa0487770:intron 30.0%
TTACCAACTGAAAGATACAA+TGG - chr3_4:6910440-6910459 None:intergenic 30.0%
!!! AAAATGGTGTTTTGATTTGG+GGG - chr3_4:6910794-6910813 None:intergenic 30.0%
CAGATAGACGAATCATAAAA+TGG - chr3_4:6910810-6910829 None:intergenic 30.0%
CATCTTCTCATTATTTAAGG+GGG + chr3_4:6910899-6910918 Msa0487770:intron 30.0%
ATCTTCTCATTATTTAAGGG+GGG + chr3_4:6910900-6910919 Msa0487770:intron 30.0%
AGTATAGCAACCAAAAAAAG+AGG + chr3_4:6911020-6911039 Msa0487770:intron 30.0%
ACAGACTGTTTATGATATAC+TGG + chr3_4:6911150-6911169 Msa0487770:intron 30.0%
CAGACTGTTTATGATATACT+GGG + chr3_4:6911151-6911170 Msa0487770:intron 30.0%
ATTATTAGTCACACTGAAAG+GGG - chr3_4:6911239-6911258 None:intergenic 30.0%
AGTGTGACTAATAATAACAC+CGG + chr3_4:6911244-6911263 Msa0487770:intron 30.0%
!!! ATTTTTTTTGAAGGGTAGTC+CGG - chr3_4:6911266-6911285 None:intergenic 30.0%
!! AAACATAGAATTTGCTACCT+TGG - chr3_4:6911432-6911451 None:intergenic 30.0%
ATTCAAAAAACTCTGCAACT+TGG - chr3_4:6911614-6911633 None:intergenic 30.0%
TTGGGATGAAGATATACTAA+TGG + chr3_4:6911815-6911834 Msa0487770:three_prime_UTR 30.0%
!! CTACTTGGTTTGTATTTCTT+TGG + chr3_4:6911954-6911973 Msa0487770:three_prime_UTR 30.0%
ACAGAGAAAGAGAGACAAAA+GGG - chr3_4:6907495-6907514 None:intergenic 35.0%
GAATGAAAGAAGAAGGGTTT+AGG - chr3_4:6907890-6907909 None:intergenic 35.0%
AGAAGAAGAAGTAGTAGTAG+TGG - chr3_4:6907936-6907955 None:intergenic 35.0%
!! AGGAGAGAGATTTTTGAAGA+GGG - chr3_4:6907991-6908010 None:intergenic 35.0%
!! AAGGAGAGAGATTTTTGAAG+AGG - chr3_4:6907992-6908011 None:intergenic 35.0%
GAATGTTTAAGAAGTAGCCA+TGG - chr3_4:6908121-6908140 None:intergenic 35.0%
! GTAGTAATCTGTTGTTGTTC+AGG - chr3_4:6908187-6908206 None:intergenic 35.0%
ACAGATTACTACAACAACAG+AGG + chr3_4:6908195-6908214 Msa0487770:CDS 35.0%
TGAAGTTGTGTTTGTAGAAG+AGG - chr3_4:6908260-6908279 None:intergenic 35.0%
CATCTTTCAGACTTAATAGG+AGG + chr3_4:6908278-6908297 Msa0487770:CDS 35.0%
!!! ACGAGTTTTCTGAAATTCCT+GGG - chr3_4:6908364-6908383 None:intergenic 35.0%
!!! AACGAGTTTTCTGAAATTCC+TGG - chr3_4:6908365-6908384 None:intergenic 35.0%
TTCAGAAAACTCGTTCAGAA+AGG + chr3_4:6908370-6908389 Msa0487770:CDS 35.0%
TTCATGAAAGGACACATTTG+GGG + chr3_4:6908527-6908546 Msa0487770:intron 35.0%
GTTCCTTAAACAATTCCCTT+AGG + chr3_4:6908668-6908687 Msa0487770:intron 35.0%
AGCACAACCCTTTGTAATAT+TGG + chr3_4:6908700-6908719 Msa0487770:intron 35.0%
GACACAACCTAACATATTCT+AGG + chr3_4:6908742-6908761 Msa0487770:intron 35.0%
TTTGGGTCCTAGAATATGTT+AGG - chr3_4:6908752-6908771 None:intergenic 35.0%
!! GAAAGTTTTGACCTTTGTGT+TGG + chr3_4:6908875-6908894 Msa0487770:intron 35.0%
!! AAAGAGTGTTGATGAAGAAG+TGG + chr3_4:6909002-6909021 Msa0487770:CDS 35.0%
AAGTGGATGATAATTCCTCT+GGG + chr3_4:6909019-6909038 Msa0487770:CDS 35.0%
! TTTCATTGGCTATTCTCTGA+AGG - chr3_4:6909116-6909135 None:intergenic 35.0%
ACGCAGTTCAATAGTTTCAT+TGG - chr3_4:6909130-6909149 None:intergenic 35.0%
TCATATTCTTGTGTGTAGTG+AGG + chr3_4:6909389-6909408 Msa0487770:intron 35.0%
CATATTCTTGTGTGTAGTGA+GGG + chr3_4:6909390-6909409 Msa0487770:intron 35.0%
AAATCAAACCAAACAGGGAA+AGG - chr3_4:6909495-6909514 None:intergenic 35.0%
! ATTCTTTGATGGCAAGTATC+AGG - chr3_4:6909733-6909752 None:intergenic 35.0%
GCCATCAAAGAATGAAGTTA+AGG + chr3_4:6909740-6909759 Msa0487770:CDS 35.0%
TTAAGGAAGAGAGAAGAAGA+AGG + chr3_4:6909757-6909776 Msa0487770:CDS 35.0%
TACTCCATGATTACCACTTT+GGG - chr3_4:6909845-6909864 None:intergenic 35.0%
ATACTCCATGATTACCACTT+TGG - chr3_4:6909846-6909865 None:intergenic 35.0%
ATACACGGTCTCTTATATCA+GGG - chr3_4:6909912-6909931 None:intergenic 35.0%
AATACACGGTCTCTTATATC+AGG - chr3_4:6909913-6909932 None:intergenic 35.0%
ATTTGATACCTTCTGAATGC+TGG - chr3_4:6909962-6909981 None:intergenic 35.0%
!! ACCCAATATTGATTTCAGCA+AGG + chr3_4:6910085-6910104 Msa0487770:CDS 35.0%
ATAGTTATCTTACTCCCTCT+TGG - chr3_4:6910120-6910139 None:intergenic 35.0%
!! CAGACAAAAAAAGCATCTGA+TGG - chr3_4:6910197-6910216 None:intergenic 35.0%
TAATTCCTGCACCTTAAGTA+AGG + chr3_4:6910317-6910336 Msa0487770:intron 35.0%
ACATTGAGTGTCCTTACTTA+AGG - chr3_4:6910331-6910350 None:intergenic 35.0%
CTTCCATTGTATCTTTCAGT+TGG + chr3_4:6910434-6910453 Msa0487770:intron 35.0%
CTGGGAAAAACTGTAAATGT+TGG - chr3_4:6910465-6910484 None:intergenic 35.0%
! CAACATTTACAGTTTTTCCC+AGG + chr3_4:6910463-6910482 Msa0487770:intron 35.0%
! AGTTTTTCCCAGGACTTTTT+AGG + chr3_4:6910473-6910492 Msa0487770:intron 35.0%
TGAGTCCTTTATTGGAACTT+TGG + chr3_4:6910592-6910611 Msa0487770:intron 35.0%
GAGTCCTTTATTGGAACTTT+GGG + chr3_4:6910593-6910612 Msa0487770:intron 35.0%
TCTTTATCATCATGCTACAC+TGG + chr3_4:6910679-6910698 Msa0487770:intron 35.0%
! TGGTAATTGACTCAGATTGT+TGG + chr3_4:6910699-6910718 Msa0487770:intron 35.0%
!!! AAATGGTGTTTTGATTTGGG+GGG - chr3_4:6910793-6910812 None:intergenic 35.0%
TCTTCTCATTATTTAAGGGG+GGG + chr3_4:6910901-6910920 Msa0487770:intron 35.0%
!!! GATGGACTTACCTCTTTTTT+TGG - chr3_4:6911033-6911052 None:intergenic 35.0%
! GTCAAACATCTTTTTGCAGA+CGG + chr3_4:6911058-6911077 Msa0487770:intron 35.0%
! TCAAACATCTTTTTGCAGAC+GGG + chr3_4:6911059-6911078 Msa0487770:intron 35.0%
TGTTTATGATATACTGGGAG+TGG + chr3_4:6911156-6911175 Msa0487770:intron 35.0%
GGTAGTCAACAGATAACATT+TGG + chr3_4:6911177-6911196 Msa0487770:intron 35.0%
TTATTAGTCACACTGAAAGG+GGG - chr3_4:6911238-6911257 None:intergenic 35.0%
GTTCTCTGTGATTAAGTATC+TGG + chr3_4:6911397-6911416 Msa0487770:intron 35.0%
!! ACTTAACACATAGTGGACAA+AGG - chr3_4:6911519-6911538 None:intergenic 35.0%
ATTTACTTATTAGGGAACGG+TGG - chr3_4:6911554-6911573 None:intergenic 35.0%
ATGTCATATATGTCTGGTAG+TGG + chr3_4:6911777-6911796 Msa0487770:CDS 35.0%
TGGCTGATAACATTGTGATT+GGG + chr3_4:6911797-6911816 Msa0487770:exon 35.0%
TACCAACTTTACATCAGTCA+AGG - chr3_4:6911893-6911912 None:intergenic 35.0%
TGGTTGTCAAATACTTCGTT+AGG + chr3_4:6911921-6911940 Msa0487770:three_prime_UTR 35.0%
CACAGAGAAAGAGAGACAAA+AGG - chr3_4:6907496-6907515 None:intergenic 40.0%
! GTGTATGTTTTGTCTCTGTC+TGG + chr3_4:6907528-6907547 Msa0487770:five_prime_UTR 40.0%
ACTGGAAAGGAAAGGAGAAA+GGG - chr3_4:6907637-6907656 None:intergenic 40.0%
AACTGGAAAGGAAAGGAGAA+AGG - chr3_4:6907638-6907657 None:intergenic 40.0%
CCTCAAAAACTGGAAAGGAA+AGG - chr3_4:6907645-6907664 None:intergenic 40.0%
! CCTTTCCTTTCCAGTTTTTG+AGG + chr3_4:6907642-6907661 Msa0487770:five_prime_UTR 40.0%
TAAAGGAAGAAAAAGAGGGG+TGG - chr3_4:6907861-6907880 None:intergenic 40.0%
GGGTAAAGGAAGAAAAAGAG+GGG - chr3_4:6907864-6907883 None:intergenic 40.0%
GGGGTAAAGGAAGAAAAAGA+GGG - chr3_4:6907865-6907884 None:intergenic 40.0%
AAAGAAGAAGGGTTTAGGAG+GGG - chr3_4:6907885-6907904 None:intergenic 40.0%
GAAAGAAGAAGGGTTTAGGA+GGG - chr3_4:6907886-6907905 None:intergenic 40.0%
TGAAAGAAGAAGGGTTTAGG+AGG - chr3_4:6907887-6907906 None:intergenic 40.0%
AGAAGAAGTAGTAGTAGTGG+CGG - chr3_4:6907933-6907952 None:intergenic 40.0%
ACGAGGAGAAGAAGAAGAAA+AGG - chr3_4:6908011-6908030 None:intergenic 40.0%
ATTACTAGTGTGGCGTGTTA+GGG - chr3_4:6908080-6908099 None:intergenic 40.0%
TATTACTAGTGTGGCGTGTT+AGG - chr3_4:6908081-6908100 None:intergenic 40.0%
GTTTAAGAAGTAGCCATGGA+AGG - chr3_4:6908117-6908136 None:intergenic 40.0%
ACTTAATAGGAGGCAGCAAA+AGG + chr3_4:6908288-6908307 Msa0487770:CDS 40.0%
! ATCTAGTCCTCCTGATTTGT+TGG + chr3_4:6908321-6908340 Msa0487770:CDS 40.0%
!! CTCGTTCAGAAAGGTATTCA+AGG + chr3_4:6908379-6908398 Msa0487770:CDS 40.0%
TCATGAAAGGACACATTTGG+GGG + chr3_4:6908528-6908547 Msa0487770:intron 40.0%
TGGCAAATCTAGTGATCAGA+TGG + chr3_4:6908909-6908928 Msa0487770:CDS 40.0%
TACTTTCAGCATGGTTCTTG+TGG - chr3_4:6908966-6908985 None:intergenic 40.0%
GAAGTGGATGATAATTCCTC+TGG + chr3_4:6909018-6909037 Msa0487770:CDS 40.0%
GTTGAGGGTAATATCAGTGT+TGG + chr3_4:6909078-6909097 Msa0487770:CDS 40.0%
AGCCAATTGGATGAATGAGA+TGG + chr3_4:6909618-6909637 Msa0487770:CDS 40.0%
CTCCATCTCATTCATCCAAT+TGG - chr3_4:6909623-6909642 None:intergenic 40.0%
TAAAGAGTTGTCGACATGGA+GGG - chr3_4:6909887-6909906 None:intergenic 40.0%
! AGACCGTGTATTTTATCTCG+AGG + chr3_4:6909921-6909940 Msa0487770:CDS 40.0%
! GACCGTGTATTTTATCTCGA+GGG + chr3_4:6909922-6909941 Msa0487770:CDS 40.0%
CACCCTCGAGATAAAATACA+CGG - chr3_4:6909927-6909946 None:intergenic 40.0%
! TCACAGTCTAGAATCAATGC+AGG - chr3_4:6910065-6910084 None:intergenic 40.0%
CAAGGATATTGAAGCCAAGA+GGG + chr3_4:6910103-6910122 Msa0487770:CDS 40.0%
AAGTTCCATACTTCGCACTT+GGG - chr3_4:6910298-6910317 None:intergenic 40.0%
TAAGTTCCATACTTCGCACT+TGG - chr3_4:6910299-6910318 None:intergenic 40.0%
CTAGTCTCCTAAAAAGTCCT+GGG - chr3_4:6910483-6910502 None:intergenic 40.0%
TCTAGTCTCCTAAAAAGTCC+TGG - chr3_4:6910484-6910503 None:intergenic 40.0%
!! GGTTTTGTGATTGTGTAACC+TGG + chr3_4:6910527-6910546 Msa0487770:intron 40.0%
TTTGTGATTGTGTAACCTGG+TGG + chr3_4:6910530-6910549 Msa0487770:intron 40.0%
TTGTGATTGTGTAACCTGGT+GGG + chr3_4:6910531-6910550 Msa0487770:intron 40.0%
GAGTCCCAAAGTTCCAATAA+AGG - chr3_4:6910600-6910619 None:intergenic 40.0%
!!! AATGGTGTTTTGATTTGGGG+GGG - chr3_4:6910792-6910811 None:intergenic 40.0%
!! CATGTTTCGTGCTGGTTATT+AGG + chr3_4:6910933-6910952 Msa0487770:intron 40.0%
AGGGCAATGTCATATATGTC+TGG + chr3_4:6911771-6911790 Msa0487770:CDS 40.0%
GTGGCTGATAACATTGTGAT+TGG + chr3_4:6911796-6911815 Msa0487770:exon 40.0%
GACCTTGACTGATGTAAAGT+TGG + chr3_4:6911888-6911907 Msa0487770:three_prime_UTR 40.0%
!! TTAGGTGCTACTAGACTACT+TGG + chr3_4:6911939-6911958 Msa0487770:three_prime_UTR 40.0%
CACAAGGAAGTGAAGAGGTT+GGG - chr3_4:6907829-6907848 None:intergenic 45.0%
AACAGCACAAGGAAGTGAAG+AGG - chr3_4:6907834-6907853 None:intergenic 45.0%
GGGGGTAAAGGAAGAAAAAG+AGG - chr3_4:6907866-6907885 None:intergenic 45.0%
AAGAAGAAGGGTTTAGGAGG+GGG - chr3_4:6907884-6907903 None:intergenic 45.0%
GAAGAAGTAGTAGTAGTGGC+GGG - chr3_4:6907932-6907951 None:intergenic 45.0%
ACACCAAAAACCACCTTCCA+TGG + chr3_4:6908101-6908120 Msa0487770:CDS 45.0%
! TAGCCATGGAAGGTGGTTTT+TGG - chr3_4:6908107-6908126 None:intergenic 45.0%
TAAGAAGTAGCCATGGAAGG+TGG - chr3_4:6908114-6908133 None:intergenic 45.0%
TTCCTCTTCCTCTTCCTCTT+CGG + chr3_4:6908222-6908241 Msa0487770:CDS 45.0%
GGAATAGCCAACAAATCAGG+AGG - chr3_4:6908331-6908350 None:intergenic 45.0%
CCAGGAATAGCCAACAAATC+AGG - chr3_4:6908334-6908353 None:intergenic 45.0%
!! CCTGATTTGTTGGCTATTCC+TGG + chr3_4:6908331-6908350 Msa0487770:CDS 45.0%
! TTTGTTGGCTATTCCTGGTG+TGG + chr3_4:6908336-6908355 Msa0487770:CDS 45.0%
! TTGTTGGCTATTCCTGGTGT+GGG + chr3_4:6908337-6908356 Msa0487770:CDS 45.0%
AGAGAGAGAGAGAAAGAGAG+AGG - chr3_4:6908453-6908472 None:intergenic 45.0%
GAATGCTAACAAGTGCCCTT+AGG + chr3_4:6908555-6908574 Msa0487770:intron 45.0%
CGCCCTAAGGGAATTGTTTA+AGG - chr3_4:6908674-6908693 None:intergenic 45.0%
ATGAACTGCACCCAACACAA+AGG - chr3_4:6908889-6908908 None:intergenic 45.0%
TTGTGTTGGGTGCAGTTCAT+TGG + chr3_4:6908889-6908908 Msa0487770:intron 45.0%
GTAAGTCGCTTCTTCTGCAT+AGG - chr3_4:6909051-6909070 None:intergenic 45.0%
CGACTTACGTTCTGTGTTGA+GGG + chr3_4:6909063-6909082 Msa0487770:CDS 45.0%
TTCCTGAACCAATTGGCAAG+TGG + chr3_4:6909166-6909185 Msa0487770:CDS 45.0%
TCGAGGATATTGAAGTGGTC+AGG - chr3_4:6909204-6909223 None:intergenic 45.0%
!! AAGCGTCGAGGATATTGAAG+TGG - chr3_4:6909209-6909228 None:intergenic 45.0%
! CTTTTTATGCTGAGCCACAG+AGG + chr3_4:6909226-6909245 Msa0487770:CDS 45.0%
AAGGTGTATGCATACCTCTG+TGG - chr3_4:6909243-6909262 None:intergenic 45.0%
! ATTTGTTACCAGGGTGATGC+AGG + chr3_4:6909275-6909294 Msa0487770:CDS 45.0%
CATCAAGCCTCTTCGATTGA+TGG + chr3_4:6909317-6909336 Msa0487770:CDS 45.0%
!!! AGAGGAGTGTTTTCAGTGAC+AGG + chr3_4:6909340-6909359 Msa0487770:CDS 45.0%
! GAGTGTTTTCAGTGACAGGA+TGG + chr3_4:6909344-6909363 Msa0487770:CDS 45.0%
GAGCTGTTCATGAAGCCAAT+TGG + chr3_4:6909605-6909624 Msa0487770:CDS 45.0%
AGGAAGAGAGAAGAAGAAGG+TGG + chr3_4:6909760-6909779 Msa0487770:CDS 45.0%
! CATGATTACCACTTTGGGAG+GGG - chr3_4:6909840-6909859 None:intergenic 45.0%
! CCATGATTACCACTTTGGGA+GGG - chr3_4:6909841-6909860 None:intergenic 45.0%
TCCATGATTACCACTTTGGG+AGG - chr3_4:6909842-6909861 None:intergenic 45.0%
AAAGAGTTGTCGACATGGAG+GGG - chr3_4:6909886-6909905 None:intergenic 45.0%
GTAAAGAGTTGTCGACATGG+AGG - chr3_4:6909888-6909907 None:intergenic 45.0%
GGTGTAAAGAGTTGTCGACA+TGG - chr3_4:6909891-6909910 None:intergenic 45.0%
TCTGAATGCTGGAATGCATG+TGG - chr3_4:6909951-6909970 None:intergenic 45.0%
CATGCATTCCAGCATTCAGA+AGG + chr3_4:6909951-6909970 Msa0487770:CDS 45.0%
GCAAGGATATTGAAGCCAAG+AGG + chr3_4:6910102-6910121 Msa0487770:CDS 45.0%
! ATATCTTTGTTGGGCTGGGT+TGG + chr3_4:6910259-6910278 Msa0487770:intron 45.0%
TATGTCCCAAGTGCGAAGTA+TGG + chr3_4:6910290-6910309 Msa0487770:intron 45.0%
AGTGTCCTTACTTAAGGTGC+AGG - chr3_4:6910325-6910344 None:intergenic 45.0%
ACCACAAATGCTAGCCATTG+CGG - chr3_4:6910376-6910395 None:intergenic 45.0%
AATGGCTAGCATTTGTGGTG+TGG + chr3_4:6910377-6910396 Msa0487770:intron 45.0%
TTTGTGGTGTGGTTCTCTTG+AGG + chr3_4:6910388-6910407 Msa0487770:intron 45.0%
! TATTGCAGAGCTAGTCTGTG+CGG + chr3_4:6910505-6910524 Msa0487770:intron 45.0%
ATTCAAAACCTGATCCCACC+AGG - chr3_4:6910548-6910567 None:intergenic 45.0%
!!! ATGGTGTTTTGATTTGGGGG+GGG - chr3_4:6910791-6910810 None:intergenic 45.0%
GTAAAGCTCATGTTTCGTGC+TGG + chr3_4:6910925-6910944 Msa0487770:intron 45.0%
GTATCTGGAAGTAGATGCCA+AGG + chr3_4:6911412-6911431 Msa0487770:intron 45.0%
CAGCAAGTTCTATCTGTCGA+AGG + chr3_4:6911645-6911664 Msa0487770:CDS 45.0%
AAATAGCCAGAACCAACCAC+AGG + chr3_4:6911674-6911693 Msa0487770:CDS 45.0%
TACCTCATGAAGGTAACCTG+TGG + chr3_4:6911703-6911722 Msa0487770:CDS 45.0%
!! ATTGCCCTTCTGAAGTCCAA+GGG - chr3_4:6911759-6911778 None:intergenic 45.0%
!! TAATTTATTTATTAGTATTT+GGG - chr3_4:6907562-6907581 None:intergenic 5.0%
!! ATAATTTATTTATTAGTATT+TGG - chr3_4:6907563-6907582 None:intergenic 5.0%
!!! TTTATTTTATTTTTTTTGAA+GGG - chr3_4:6911274-6911293 None:intergenic 5.0%
!!! TTTTATTTTATTTTTTTTGA+AGG - chr3_4:6911275-6911294 None:intergenic 5.0%
! GGTTTTTGCCTGTGTACCCT+TGG - chr3_4:6907616-6907635 None:intergenic 50.0%
!!! TAACGTTGCGTCGCTTTTGG+AGG - chr3_4:6907723-6907742 None:intergenic 50.0%
!! CTGTAACGTTGCGTCGCTTT+TGG - chr3_4:6907726-6907745 None:intergenic 50.0%
CAAAAGCGACGCAACGTTAC+AGG + chr3_4:6907724-6907743 Msa0487770:five_prime_UTR 50.0%
AAGGAAGTGAAGAGGTTGGG+CGG - chr3_4:6907826-6907845 None:intergenic 50.0%
GCACAAGGAAGTGAAGAGGT+TGG - chr3_4:6907830-6907849 None:intergenic 50.0%
GGGGTGGAAATAACAGCACA+AGG - chr3_4:6907845-6907864 None:intergenic 50.0%
AAGGGTTTAGGAGGGGGTAA+AGG - chr3_4:6907878-6907897 None:intergenic 50.0%
AGTGTGGCGTGTTAGGGTTA+GGG - chr3_4:6908074-6908093 None:intergenic 50.0%
TAGTGTGGCGTGTTAGGGTT+AGG - chr3_4:6908075-6908094 None:intergenic 50.0%
AGAGGAAGAGGAAGAGGAAG+AGG - chr3_4:6908227-6908246 None:intergenic 50.0%
AGAAGAGGAAGATGCCGAAG+AGG - chr3_4:6908245-6908264 None:intergenic 50.0%
TGAAAGGACACATTTGGGGG+TGG + chr3_4:6908531-6908550 Msa0487770:intron 50.0%
GAAAGGACACATTTGGGGGT+GGG + chr3_4:6908532-6908551 Msa0487770:intron 50.0%
AAAGGACACATTTGGGGGTG+GGG + chr3_4:6908533-6908552 Msa0487770:intron 50.0%
TGTGCTAACAAGCGCCCTAA+GGG - chr3_4:6908686-6908705 None:intergenic 50.0%
TTGTGCTAACAAGCGCCCTA+AGG - chr3_4:6908687-6908706 None:intergenic 50.0%
GAGTATCTGCAGAGCTCTGT+TGG + chr3_4:6908934-6908953 Msa0487770:CDS 50.0%
GCGACTTACGTTCTGTGTTG+AGG + chr3_4:6909062-6909081 Msa0487770:CDS 50.0%
GAGGTGGTTCCTGAACCAAT+TGG + chr3_4:6909159-6909178 Msa0487770:CDS 50.0%
! TGCCACTTGCCAATTGGTTC+AGG - chr3_4:6909171-6909190 None:intergenic 50.0%
TGAACCAATTGGCAAGTGGC+AGG + chr3_4:6909170-6909189 Msa0487770:CDS 50.0%
! ACATCCTGCCACTTGCCAAT+TGG - chr3_4:6909177-6909196 None:intergenic 50.0%
ATTGGCAAGTGGCAGGATGT+TGG + chr3_4:6909177-6909196 Msa0487770:CDS 50.0%
!! GCTCAGCATAAAAAGCGTCG+AGG - chr3_4:6909221-6909240 None:intergenic 50.0%
CAGGAAAGAGAGTCTTCTGC+TGG + chr3_4:6909294-6909313 Msa0487770:CDS 50.0%
AGCCTCTTCGATTGATGGAG+AGG + chr3_4:6909322-6909341 Msa0487770:CDS 50.0%
CTCCTCTCCATCAATCGAAG+AGG - chr3_4:6909327-6909346 None:intergenic 50.0%
! CTTGTGTGTAGTGAGGGTGT+TGG + chr3_4:6909396-6909415 Msa0487770:intron 50.0%
AAACCATCGGGAATAAGGCC+AGG - chr3_4:6909691-6909710 None:intergenic 50.0%
! AGCTCTCATGCTTTTCGTGG+AGG - chr3_4:6909810-6909829 None:intergenic 50.0%
! TCCACGAAAAGCATGAGAGC+TGG + chr3_4:6909809-6909828 Msa0487770:CDS 50.0%
! ACCAGCTCTCATGCTTTTCG+TGG - chr3_4:6909813-6909832 None:intergenic 50.0%
TGGTTATTCCCCTCCCAAAG+TGG + chr3_4:6909829-6909848 Msa0487770:CDS 50.0%
CCCTCCCAAAGTGGTAATCA+TGG + chr3_4:6909838-6909857 Msa0487770:CDS 50.0%
ACAAATGCTAGCCATTGCGG+AGG - chr3_4:6910373-6910392 None:intergenic 50.0%
TCCGCAATGGCTAGCATTTG+TGG + chr3_4:6910372-6910391 Msa0487770:intron 50.0%
TGGTGTGGTTCTCTTGAGGT+TGG + chr3_4:6910392-6910411 Msa0487770:intron 50.0%
! ATTGCAGAGCTAGTCTGTGC+GGG + chr3_4:6910506-6910525 Msa0487770:intron 50.0%
TTGTGTAACCTGGTGGGATC+AGG + chr3_4:6910537-6910556 Msa0487770:intron 50.0%
!!! TGGTGTTTTGATTTGGGGGG+GGG - chr3_4:6910790-6910809 None:intergenic 50.0%
AGCCACAGGTTACCTTCATG+AGG - chr3_4:6911708-6911727 None:intergenic 50.0%
!! CATTGCCCTTCTGAAGTCCA+AGG - chr3_4:6911760-6911779 None:intergenic 50.0%
TATCGAGAACAGCGCAGCCA+AGG + chr3_4:6907596-6907615 Msa0487770:five_prime_UTR 55.0%
ATCGAGAACAGCGCAGCCAA+GGG + chr3_4:6907597-6907616 Msa0487770:five_prime_UTR 55.0%
TGGCGTGTTAGGGTTAGGGT+TGG - chr3_4:6908070-6908089 None:intergenic 55.0%
TGCCGAAGAGGAAGAGGAAG+AGG - chr3_4:6908233-6908252 None:intergenic 55.0%
GGAAGATGCCGAAGAGGAAG+AGG - chr3_4:6908239-6908258 None:intergenic 55.0%
AAATTCCTGGGACCCACACC+AGG - chr3_4:6908352-6908371 None:intergenic 55.0%
TGAACTGCGTGATCTCGTCG+AGG + chr3_4:6909140-6909159 Msa0487770:CDS 55.0%
CTCTCTTTCCTGCATCACCC+TGG - chr3_4:6909286-6909305 None:intergenic 55.0%
CCAGGCAAGGTAGACACAAC+AGG - chr3_4:6909673-6909692 None:intergenic 55.0%
CCTGTTGTGTCTACCTTGCC+TGG + chr3_4:6909670-6909689 Msa0487770:CDS 55.0%
ATCGGGAATAAGGCCAGGCA+AGG - chr3_4:6909686-6909705 None:intergenic 55.0%
!! TTGCCTGGCCTTATTCCCGA+TGG + chr3_4:6909685-6909704 Msa0487770:CDS 55.0%
! CATGCTTTTCGTGGAGGTCG+CGG - chr3_4:6909804-6909823 None:intergenic 55.0%
AACACCACAGCTAGCTGCTG+TGG - chr3_4:6910660-6910679 None:intergenic 55.0%
!!! GTGTTTTGATTTGGGGGGGG+GGG - chr3_4:6910788-6910807 None:intergenic 55.0%
!!! GGTGTTTTGATTTGGGGGGG+GGG - chr3_4:6910789-6910808 None:intergenic 55.0%
TCATGAGGTAGCAGCACCTG+TGG - chr3_4:6911693-6911712 None:intergenic 55.0%
!! CAGGTGCTGCTACCTCATGA+AGG + chr3_4:6911693-6911712 Msa0487770:CDS 55.0%
GAAGGTAACCTGTGGCTACC+AGG + chr3_4:6911711-6911730 Msa0487770:CDS 55.0%
!! TTCTGAAGTCCAAGGGTGGC+CGG - chr3_4:6911752-6911771 None:intergenic 55.0%
GCCACCCTTGGACTTCAGAA+GGG + chr3_4:6911752-6911771 Msa0487770:CDS 55.0%
!!! TGCGTCGCTTTTGGAGGTGG+CGG - chr3_4:6907717-6907736 None:intergenic 60.0%
!!! CGTTGCGTCGCTTTTGGAGG+TGG - chr3_4:6907720-6907739 None:intergenic 60.0%
GTGAAGAGGTTGGGCGGTGA+AGG - chr3_4:6907820-6907839 None:intergenic 60.0%
!! GTAGTAGTAGTGGCGGGTGC+AGG - chr3_4:6907926-6907945 None:intergenic 60.0%
CTATTCCTGGTGTGGGTCCC+AGG + chr3_4:6908344-6908363 Msa0487770:CDS 60.0%
CTGCATAGGCTGCTTCCCAG+AGG - chr3_4:6909037-6909056 None:intergenic 60.0%
ACTGCGTGATCTCGTCGAGG+TGG + chr3_4:6909143-6909162 Msa0487770:CDS 60.0%
GGAGGTCGCGGAGATACTCT+AGG - chr3_4:6909792-6909811 None:intergenic 60.0%
CTTGAGCTCTGCCTCCGCAA+TGG + chr3_4:6910359-6910378 Msa0487770:intron 60.0%
! GCAGCACCTGTGGTTGGTTC+TGG - chr3_4:6911683-6911702 None:intergenic 60.0%
GAGGTAGCAGCACCTGTGGT+TGG - chr3_4:6911689-6911708 None:intergenic 60.0%
GGTAACCTGTGGCTACCAGG+TGG + chr3_4:6911714-6911733 Msa0487770:CDS 60.0%
GCTTTCCACCTGGTAGCCAC+AGG - chr3_4:6911722-6911741 None:intergenic 60.0%
CAGGTGGAAAGCCTTTCCCC+CGG + chr3_4:6911730-6911749 Msa0487770:CDS 60.0%
! TCTGAAGTCCAAGGGTGGCC+GGG - chr3_4:6911751-6911770 None:intergenic 60.0%
GGCCACCCTTGGACTTCAGA+AGG + chr3_4:6911751-6911770 Msa0487770:CDS 60.0%
!! GCCCTTCTGAAGTCCAAGGG+TGG - chr3_4:6911756-6911775 None:intergenic 60.0%
! CAGCGCAGCCAAGGGTACAC+AGG + chr3_4:6907605-6907624 Msa0487770:five_prime_UTR 65.0%
CCACAGCTAGCTGCTGTGGC+AGG - chr3_4:6910656-6910675 None:intergenic 65.0%
CCTGCCACAGCAGCTAGCTG+TGG + chr3_4:6910653-6910672 Msa0487770:intron 65.0%
CGGGGGAAAGGCTTTCCACC+TGG - chr3_4:6911732-6911751 None:intergenic 65.0%
TGAAGTCCAAGGGTGGCCGG+GGG - chr3_4:6911749-6911768 None:intergenic 65.0%
CTGAAGTCCAAGGGTGGCCG+GGG - chr3_4:6911750-6911769 None:intergenic 65.0%
TCCAAGGGTGGCCGGGGGAA+AGG - chr3_4:6911744-6911763 None:intergenic 70.0%
GCCTTTCCCCCGGCCACCCT+TGG + chr3_4:6911740-6911759 Msa0487770:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 6907480 6912073 6907480 ID=Msa0487770;Name=Msa0487770
chr3_4 mRNA 6907480 6912073 6907480 ID=Msa0487770-mRNA-1;Parent=Msa0487770;Name=Msa0487770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=326|1|1|1|1|1|5|270|579
chr3_4 exon 6907480 6908435 6907480 ID=Msa0487770-mRNA-1:exon:2400;Parent=Msa0487770-mRNA-1
chr3_4 exon 6908904 6909365 6908904 ID=Msa0487770-mRNA-1:exon:2401;Parent=Msa0487770-mRNA-1
chr3_4 exon 6909595 6909972 6909595 ID=Msa0487770-mRNA-1:exon:2402;Parent=Msa0487770-mRNA-1
chr3_4 exon 6910059 6910126 6910059 ID=Msa0487770-mRNA-1:exon:2403;Parent=Msa0487770-mRNA-1
chr3_4 exon 6911602 6912073 6911602 ID=Msa0487770-mRNA-1:exon:2404;Parent=Msa0487770-mRNA-1
chr3_4 five_prime_UTR 6907480 6907805 6907480 ID=Msa0487770-mRNA-1:five_prime_utr;Parent=Msa0487770-mRNA-1
chr3_4 CDS 6907806 6908435 6907806 ID=Msa0487770-mRNA-1:cds;Parent=Msa0487770-mRNA-1
chr3_4 CDS 6908904 6909365 6908904 ID=Msa0487770-mRNA-1:cds;Parent=Msa0487770-mRNA-1
chr3_4 CDS 6909595 6909972 6909595 ID=Msa0487770-mRNA-1:cds;Parent=Msa0487770-mRNA-1
chr3_4 CDS 6910059 6910126 6910059 ID=Msa0487770-mRNA-1:cds;Parent=Msa0487770-mRNA-1
chr3_4 CDS 6911602 6911803 6911602 ID=Msa0487770-mRNA-1:cds;Parent=Msa0487770-mRNA-1
chr3_4 three_prime_UTR 6911804 6912073 6911804 ID=Msa0487770-mRNA-1:three_prime_utr;Parent=Msa0487770-mRNA-1
Gene Sequence

>Msa0487770

ATGCATAAACTCCTTCACCGCCCAACCTCTTCACTTCCTTGTGCTGTTATTTCCACCCCTCTTTTTCTTCCTTTACCCCCTCCTAAACCCTTCTTCTTTCATTCTTCTTTAACAATGCCTGCACCCGCCACTACTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTCTTTCATTCCCTCTTCAAAAATCTCTCTCCTTTTCTTCTTCTTCTCCTCGTTATTCTAATGCTTCTTATGTTCGCACATGTTTTTGTCCAACCCTAACCCTAACACGCCACACTAGTAATAACACCAAAAACCACCTTCCATGGCTACTTCTTAAACATTCTCAACATTCAAATGCTACTTCACACTCTTCTTTTCATAATAACCCTGAACAACAACAGATTACTACAACAACAGAGGATGATTCCTCTTCCTCTTCCTCTTCCTCTTCGGCATCTTCCTCTTCTACAAACACAACTTCATCTTTCAGACTTAATAGGAGGCAGCAAAAGGCAGAATCATCATCTAGTCCTCCTGATTTGTTGGCTATTCCTGGTGTGGGTCCCAGGAATTTCAGAAAACTCGTTCAGAAAGGTATTCAAGGTGTTGCTCAACTCAAACAACTCTACAAAGATAAGTTCATTGGCAAATCTAGTGATCAGATGGTTGAGTATCTGCAGAGCTCTGTTGGAATTATCCACAAGAACCATGCTGAAAGTATAACTACTTTCATTAAAAAGAGTGTTGATGAAGAAGTGGATGATAATTCCTCTGGGAAGCAGCCTATGCAGAAGAAGCGACTTACGTTCTGTGTTGAGGGTAATATCAGTGTTGGCAAGACTACTTTCCTTCAGAGAATAGCCAATGAAACTATTGAACTGCGTGATCTCGTCGAGGTGGTTCCTGAACCAATTGGCAAGTGGCAGGATGTTGGACCTGACCACTTCAATATCCTCGACGCTTTTTATGCTGAGCCACAGAGGTATGCATACACCTTTCAAAACTACGTATTTGTTACCAGGGTGATGCAGGAAAGAGAGTCTTCTGCTGGCATCAAGCCTCTTCGATTGATGGAGAGGAGTGTTTTCAGTGACAGGATGGTTTTTGTACGAGCTGTTCATGAAGCCAATTGGATGAATGAGATGGAGATAAGCATTTATGACTCTTGGTTTGATCCTGTTGTGTCTACCTTGCCTGGCCTTATTCCCGATGGTTTTATATATCTCAGAGCAAGTCCTGATACTTGCCATCAAAGAATGAAGTTAAGGAAGAGAGAAGAAGAAGGTGGAGTCAGCCTAGAGTATCTCCGCGACCTCCACGAAAAGCATGAGAGCTGGTTATTCCCCTCCCAAAGTGGTAATCATGGAGTATTATCGGTCAATAAGCTTCCCCTCCATGTCGACAACTCTTTACACCCTGATATAAGAGACCGTGTATTTTATCTCGAGGGTGACCACATGCATTCCAGCATTCAGAAGGTTCCTGCATTGATTCTAGACTGTGAACCCAATATTGATTTCAGCAAGGATATTGAAGCCAAGAGGGAATATGCGCGCCAAGTTGCAGAGTTTTTTGAATTTGTTAAGAAACAGCAAGTTCTATCTGTCGAAGGTGAGAAAAATAGCCAGAACCAACCACAGGTGCTGCTACCTCATGAAGGTAACCTGTGGCTACCAGGTGGAAAGCCTTTCCCCCGGCCACCCTTGGACTTCAGAAGGGCAATGTCATATATGTCTGGTAGTGGCTGA
Protein sequence

>Msa0487770

MHKLLHRPTSSLPCAVISTPLFLPLPPPKPFFFHSSLTMPAPATTTTSSSSSSSSSSALSFPLQKSLSFSSSSPRYSNASYVRTCFCPTLTLTRHTSNNTKNHLPWLLLKHSQHSNATSHSSFHNNPEQQQITTTTEDDSSSSSSSSSASSSSTNTTSSFRLNRRQQKAESSSSPPDLLAIPGVGPRNFRKLVQKGIQGVAQLKQLYKDKFIGKSSDQMVEYLQSSVGIIHKNHAESITTFIKKSVDEEVDDNSSGKQPMQKKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEVVPEPIGKWQDVGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSAGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSTLPGLIPDGFIYLRASPDTCHQRMKLRKREEEGGVSLEYLRDLHEKHESWLFPSQSGNHGVLSVNKLPLHVDNSLHPDIRDRVFYLEGDHMHSSIQKVPALILDCEPNIDFSKDIEAKREYARQVAEFFEFVKKQQVLSVEGEKNSQNQPQVLLPHEGNLWLPGGKPFPRPPLDFRRAMSYMSGSG*