Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349460 | AES71126.2 | 100.000 | 107 | 0 | 0 | 1 | 107 | 24 | 130 | 2.34e-73 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349460 | sp|P59234|YIPL_SOLTU | 80.392 | 102 | 20 | 0 | 1 | 102 | 1 | 102 | 3.69e-56 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349460 | G7JB74 | 100.000 | 107 | 0 | 0 | 1 | 107 | 24 | 130 | 1.12e-73 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0194510 | Msa0349460 | 0.805883 | 1.076453e-49 | -8.615850e-47 |
| Msa0269360 | Msa0349460 | 0.827162 | 1.822200e-54 | -8.615850e-47 |
| Msa0349460 | Msa0540320 | 0.803476 | 3.424093e-49 | -8.615850e-47 |
| Msa0349460 | Msa0617370 | 0.804886 | 1.741744e-49 | -8.615850e-47 |
| Msa0349460 | Msa0674300 | 0.809760 | 1.613288e-50 | -8.615850e-47 |
| Msa0349460 | Msa0792170 | 0.819702 | 1.011144e-52 | -8.615850e-47 |
| Msa0349460 | Msa1188420 | 0.835714 | 1.428442e-56 | -8.615850e-47 |
| Msa0349460 | Msa1207690 | 0.804866 | 1.758806e-49 | -8.615850e-47 |
| Msa0349460 | Msa1214210 | 0.840608 | 7.846712e-58 | -8.615850e-47 |
| Msa0349460 | Msa1238510 | 0.817112 | 3.904464e-52 | -8.615850e-47 |
| Msa0349460 | Msa1280130 | 0.802538 | 5.349134e-49 | -8.615850e-47 |
| Msa0349460 | Msa1365120 | 0.807428 | 5.079262e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349460 | MtrunA17_Chr3g0113291 | 100.000 | 102 | 0 | 0 | 1 | 102 | 24 | 125 | 1.46e-73 | 214 |
| Msa0349460 | MtrunA17_Chr5g0436971 | 80.392 | 102 | 20 | 0 | 1 | 102 | 1 | 102 | 6.33e-59 | 177 |
| Msa0349460 | MtrunA17_Chr7g0242231 | 72.549 | 102 | 28 | 0 | 1 | 102 | 1 | 102 | 5.47e-53 | 162 |
| Msa0349460 | MtrunA17_Chr2g0316921 | 65.686 | 102 | 35 | 0 | 1 | 102 | 1 | 102 | 2.78e-48 | 150 |
| Msa0349460 | MtrunA17_Chr8g0360291 | 60.784 | 102 | 40 | 0 | 1 | 102 | 1 | 102 | 1.92e-44 | 140 |
| Msa0349460 | MtrunA17_Chr4g0046851 | 59.804 | 102 | 41 | 0 | 1 | 102 | 1 | 102 | 1.68e-42 | 135 |
| Msa0349460 | MtrunA17_Chr3g0127211 | 52.174 | 92 | 44 | 0 | 12 | 103 | 8 | 99 | 6.73e-34 | 113 |
| Msa0349460 | MtrunA17_Chr8g0346501 | 52.747 | 91 | 43 | 0 | 12 | 102 | 8 | 98 | 2.63e-32 | 108 |
| Msa0349460 | MtrunA17_Chr1g0188931 | 47.423 | 97 | 50 | 1 | 8 | 103 | 3 | 99 | 2.81e-32 | 108 |
| Msa0349460 | MtrunA17_Chr2g0316891 | 66.102 | 59 | 20 | 0 | 44 | 102 | 42 | 100 | 1.68e-22 | 84.7 |
| Msa0349460 | MtrunA17_Chr1g0188951 | 51.852 | 54 | 26 | 0 | 48 | 101 | 1 | 54 | 3.27e-16 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349460 | AT2G40110.2 | 84.314 | 102 | 16 | 0 | 1 | 102 | 1 | 102 | 5.59e-63 | 187 |
| Msa0349460 | AT2G40110.1 | 84.314 | 102 | 16 | 0 | 1 | 102 | 1 | 102 | 1.52e-62 | 186 |
| Msa0349460 | AT3G11230.4 | 72.115 | 104 | 29 | 0 | 1 | 104 | 1 | 104 | 1.56e-53 | 163 |
| Msa0349460 | AT3G11230.3 | 72.115 | 104 | 29 | 0 | 1 | 104 | 34 | 137 | 3.03e-53 | 163 |
| Msa0349460 | AT3G11230.1 | 73.529 | 102 | 27 | 0 | 1 | 102 | 1 | 102 | 3.21e-53 | 163 |
| Msa0349460 | AT3G11230.2 | 73.529 | 102 | 27 | 0 | 1 | 102 | 34 | 135 | 7.03e-53 | 163 |
| Msa0349460 | AT3G08990.2 | 70.588 | 102 | 30 | 0 | 1 | 102 | 1 | 102 | 8.35e-53 | 162 |
| Msa0349460 | AT3G08990.1 | 70.588 | 102 | 30 | 0 | 1 | 102 | 1 | 102 | 8.35e-53 | 162 |
| Msa0349460 | AT3G08990.3 | 70.588 | 102 | 30 | 0 | 1 | 102 | 1 | 102 | 8.35e-53 | 162 |
| Msa0349460 | AT3G55890.3 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 7.66e-51 | 156 |
| Msa0349460 | AT3G55890.2 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 7.66e-51 | 156 |
| Msa0349460 | AT3G55890.4 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 1.09e-50 | 156 |
| Msa0349460 | AT3G55890.1 | 69.307 | 101 | 31 | 0 | 1 | 101 | 1 | 101 | 1.09e-50 | 156 |
| Msa0349460 | AT5G53940.1 | 68.627 | 102 | 32 | 0 | 1 | 102 | 1 | 102 | 1.55e-50 | 156 |
| Msa0349460 | AT2G40110.4 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 4.20e-50 | 154 |
| Msa0349460 | AT2G40110.3 | 83.133 | 83 | 14 | 0 | 1 | 83 | 1 | 83 | 4.20e-50 | 154 |
| Msa0349460 | AT4G27745.2 | 52.174 | 92 | 44 | 0 | 12 | 103 | 8 | 99 | 1.09e-33 | 112 |
| Msa0349460 | AT4G27745.3 | 52.174 | 92 | 44 | 0 | 12 | 103 | 8 | 99 | 1.09e-33 | 112 |
| Msa0349460 | AT4G27745.1 | 52.174 | 92 | 44 | 0 | 12 | 103 | 8 | 99 | 1.09e-33 | 112 |
| Msa0349460 | AT4G27745.4 | 52.174 | 92 | 44 | 0 | 12 | 103 | 8 | 99 | 1.09e-33 | 112 |
| Msa0349460 | AT4G27740.1 | 42.697 | 89 | 51 | 0 | 14 | 102 | 10 | 98 | 9.57e-22 | 82.8 |
Find 25 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCCTTCCTTGTACTTC+TGG | 0.246905 | 3_1:-13044069 | None:intergenic |
| GAGATTGTTTGTGATCAATT+TGG | 0.319661 | 3_1:+13042325 | Msa0349460:CDS |
| TCATCTTCTTCGCAGATTCA+TGG | 0.367324 | 3_1:+13042301 | Msa0349460:intron |
| CATCTTCTTCGCAGATTCAT+GGG | 0.371578 | 3_1:+13042302 | Msa0349460:intron |
| GAGATAAGCTTTCCCATGCC+TGG | 0.451402 | 3_1:-13043268 | None:intergenic |
| GACAGCGTGAATGTTTCTCT+TGG | 0.452417 | 3_1:+13043851 | Msa0349460:intron |
| GTGGGTTGTGGATCGATTGT+GGG | 0.474305 | 3_1:+13043932 | Msa0349460:CDS |
| GAGGAGAGACCGATGATGAC+AGG | 0.487695 | 3_1:+13043881 | Msa0349460:CDS |
| TGTGGGTTGTGGATCGATTG+TGG | 0.505248 | 3_1:+13043931 | Msa0349460:CDS |
| TAGACTTTCCACTCCAGGCA+TGG | 0.508508 | 3_1:+13043255 | Msa0349460:intron |
| AGACTTTCCACTCCAGGCAT+GGG | 0.512987 | 3_1:+13043256 | Msa0349460:intron |
| TGTCTTCATATAAAGCAAGA+TGG | 0.516171 | 3_1:-13042382 | None:intergenic |
| GTTGTGGATCGATTGTGGGT+TGG | 0.527280 | 3_1:+13043936 | Msa0349460:CDS |
| ATATGAAGACATCGTTTCCA+AGG | 0.539876 | 3_1:+13042394 | Msa0349460:CDS |
| GTCTTCATATAAAGCAAGAT+GGG | 0.551967 | 3_1:-13042381 | None:intergenic |
| AAGGAAAGTCTGTGCTTGAA+AGG | 0.559471 | 3_1:+13044083 | Msa0349460:CDS |
| ATGGGTGCGACAGTATCTGC+AGG | 0.576144 | 3_1:-13042363 | None:intergenic |
| ATCTTCTTCGCAGATTCATG+GGG | 0.576917 | 3_1:+13042303 | Msa0349460:intron |
| TTGTTTGTGATCAATTTGGA+AGG | 0.582485 | 3_1:+13042329 | Msa0349460:CDS |
| GTATGTAACCCTGTCATCAT+CGG | 0.585566 | 3_1:-13043890 | None:intergenic |
| AAGCTTTCCCATGCCTGGAG+TGG | 0.589161 | 3_1:-13043263 | None:intergenic |
| AAAGACCAGAAGTACAAGGA+AGG | 0.591043 | 3_1:+13044064 | Msa0349460:CDS |
| TGTTTCTCTTGGCGAAACAG+AGG | 0.620615 | 3_1:+13043862 | Msa0349460:CDS |
| AGGAGAGACCGATGATGACA+GGG | 0.627632 | 3_1:+13043882 | Msa0349460:CDS |
| TGCAGTTGTTGTAAGAAACG+TGG | 0.670568 | 3_1:-13042178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTAATTATTTTTC+TGG | + | chr3_1:13042452-13042471 | Msa0349460:intron | 10.0% |
| !!! | TTTTAAATTAACGTTATTTA+CGG | + | chr3_1:13043682-13043701 | Msa0349460:intron | 10.0% |
| !!! | AATTAAAAAACTAACATTTT+TGG | - | chr3_1:13043764-13043783 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTAATTATTTTTC+TGG | + | chr3_1:13042452-13042471 | Msa0349460:intron | 10.0% |
| !!! | TTTTAAATTAACGTTATTTA+CGG | + | chr3_1:13043682-13043701 | Msa0349460:intron | 10.0% |
| !!! | AATTAAAAAACTAACATTTT+TGG | - | chr3_1:13043764-13043783 | None:intergenic | 10.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | - | chr3_1:13043337-13043356 | None:intergenic | 15.0% |
| !! | GTAAATAACGTTAATTTAAA+AGG | - | chr3_1:13043683-13043702 | None:intergenic | 15.0% |
| !!! | AATGTTAGTTTTTTAATTTG+TGG | + | chr3_1:13043766-13043785 | Msa0349460:intron | 15.0% |
| !!! | ATGTTTTATTTCAATTTCTT+AGG | - | chr3_1:13043337-13043356 | None:intergenic | 15.0% |
| !! | GTAAATAACGTTAATTTAAA+AGG | - | chr3_1:13043683-13043702 | None:intergenic | 15.0% |
| !!! | AATGTTAGTTTTTTAATTTG+TGG | + | chr3_1:13043766-13043785 | Msa0349460:intron | 15.0% |
| !! | ACATTGAGTATTAGTATTAT+AGG | + | chr3_1:13042704-13042723 | Msa0349460:intron | 20.0% |
| !! | ATTAGTATTATAGGCTAAAT+TGG | + | chr3_1:13042713-13042732 | Msa0349460:intron | 20.0% |
| !!! | GTTACAATTCTGAAAAATTT+AGG | + | chr3_1:13043115-13043134 | Msa0349460:intron | 20.0% |
| !!! | ATTTATGGTAATTTTGTTGT+TGG | + | chr3_1:13043158-13043177 | Msa0349460:intron | 20.0% |
| !!! | TTTATGGTAATTTTGTTGTT+GGG | + | chr3_1:13043159-13043178 | Msa0349460:intron | 20.0% |
| !! | AAAAACTCAATTAAGAATTG+GGG | - | chr3_1:13043187-13043206 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+GGG | - | chr3_1:13043188-13043207 | None:intergenic | 20.0% |
| !! | TGAAAAACTCAATTAAGAAT+TGG | - | chr3_1:13043189-13043208 | None:intergenic | 20.0% |
| !!! | AAGTCTAAAATAATAACACA+GGG | - | chr3_1:13043242-13043261 | None:intergenic | 20.0% |
| !!! | AAAGTCTAAAATAATAACAC+AGG | - | chr3_1:13043243-13043262 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | - | chr3_1:13043649-13043668 | None:intergenic | 20.0% |
| !! | AATATGAAGTCATATTATTG+TGG | + | chr3_1:13043708-13043727 | Msa0349460:intron | 20.0% |
| !! | ACATTGAGTATTAGTATTAT+AGG | + | chr3_1:13042704-13042723 | Msa0349460:intron | 20.0% |
| !! | ATTAGTATTATAGGCTAAAT+TGG | + | chr3_1:13042713-13042732 | Msa0349460:intron | 20.0% |
| !!! | GTTACAATTCTGAAAAATTT+AGG | + | chr3_1:13043115-13043134 | Msa0349460:intron | 20.0% |
| !!! | ATTTATGGTAATTTTGTTGT+TGG | + | chr3_1:13043158-13043177 | Msa0349460:intron | 20.0% |
| !!! | TTTATGGTAATTTTGTTGTT+GGG | + | chr3_1:13043159-13043178 | Msa0349460:intron | 20.0% |
| !! | AAAAACTCAATTAAGAATTG+GGG | - | chr3_1:13043187-13043206 | None:intergenic | 20.0% |
| !! | GAAAAACTCAATTAAGAATT+GGG | - | chr3_1:13043188-13043207 | None:intergenic | 20.0% |
| !! | TGAAAAACTCAATTAAGAAT+TGG | - | chr3_1:13043189-13043208 | None:intergenic | 20.0% |
| !!! | AAGTCTAAAATAATAACACA+GGG | - | chr3_1:13043242-13043261 | None:intergenic | 20.0% |
| !!! | AAAGTCTAAAATAATAACAC+AGG | - | chr3_1:13043243-13043262 | None:intergenic | 20.0% |
| !!! | ACTTGATAGATAAATTTTAG+CGG | - | chr3_1:13043649-13043668 | None:intergenic | 20.0% |
| !! | AATATGAAGTCATATTATTG+TGG | + | chr3_1:13043708-13043727 | Msa0349460:intron | 20.0% |
| ! | GATAAAGAAGAAGAAATGAA+TGG | - | chr3_1:13042249-13042268 | None:intergenic | 25.0% |
| ! | ACTGATGAATAAACAATGAA+TGG | - | chr3_1:13042499-13042518 | None:intergenic | 25.0% |
| ! | CACTGTTCTATTTATTATCT+TGG | + | chr3_1:13042665-13042684 | Msa0349460:intron | 25.0% |
| ! | GTTCTATTTATTATCTTGGT+TGG | + | chr3_1:13042669-13042688 | Msa0349460:intron | 25.0% |
| !!! | GTTTATTTTAGACTTCAAGT+TGG | + | chr3_1:13042752-13042771 | Msa0349460:intron | 25.0% |
| ! | ATATTTACAAAGTTTCAAGC+TGG | + | chr3_1:13042781-13042800 | Msa0349460:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | + | chr3_1:13042813-13042832 | Msa0349460:intron | 25.0% |
| ! | ACTTATAATATGTGGCAAAA+AGG | - | chr3_1:13042840-13042859 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTCTGGAAATTTA+TGG | + | chr3_1:13043143-13043162 | Msa0349460:intron | 25.0% |
| ! | AAAACTCAATTAAGAATTGG+GGG | - | chr3_1:13043186-13043205 | None:intergenic | 25.0% |
| ! | GTTTAAAAAGAAGAAAGAGA+AGG | + | chr3_1:13043408-13043427 | Msa0349460:intron | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | - | chr3_1:13043636-13043655 | None:intergenic | 25.0% |
| ! | TAACGTTAATTTAAAAGGCT+TGG | - | chr3_1:13043678-13043697 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTAAG+AGG | + | chr3_1:13043956-13043975 | Msa0349460:intron | 25.0% |
| ! | ACTAAAAGCTACATAAAAGA+AGG | - | chr3_1:13044007-13044026 | None:intergenic | 25.0% |
| ! | GATAAAGAAGAAGAAATGAA+TGG | - | chr3_1:13042249-13042268 | None:intergenic | 25.0% |
| ! | ACTGATGAATAAACAATGAA+TGG | - | chr3_1:13042499-13042518 | None:intergenic | 25.0% |
| ! | CACTGTTCTATTTATTATCT+TGG | + | chr3_1:13042665-13042684 | Msa0349460:intron | 25.0% |
| ! | GTTCTATTTATTATCTTGGT+TGG | + | chr3_1:13042669-13042688 | Msa0349460:intron | 25.0% |
| !!! | GTTTATTTTAGACTTCAAGT+TGG | + | chr3_1:13042752-13042771 | Msa0349460:intron | 25.0% |
| ! | ATATTTACAAAGTTTCAAGC+TGG | + | chr3_1:13042781-13042800 | Msa0349460:intron | 25.0% |
| ! | TTAGTAACGTTACAATAAGT+TGG | + | chr3_1:13042813-13042832 | Msa0349460:intron | 25.0% |
| ! | ACTTATAATATGTGGCAAAA+AGG | - | chr3_1:13042840-13042859 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTCTGGAAATTTA+TGG | + | chr3_1:13043143-13043162 | Msa0349460:intron | 25.0% |
| ! | AAAACTCAATTAAGAATTGG+GGG | - | chr3_1:13043186-13043205 | None:intergenic | 25.0% |
| ! | GTTTAAAAAGAAGAAAGAGA+AGG | + | chr3_1:13043408-13043427 | Msa0349460:intron | 25.0% |
| !!! | ATTTTAGCGGTTAACTTTTT+AGG | - | chr3_1:13043636-13043655 | None:intergenic | 25.0% |
| ! | TAACGTTAATTTAAAAGGCT+TGG | - | chr3_1:13043678-13043697 | None:intergenic | 25.0% |
| ! | TGGAAATATGTAAGATTAAG+AGG | + | chr3_1:13043956-13043975 | Msa0349460:intron | 25.0% |
| ! | ACTAAAAGCTACATAAAAGA+AGG | - | chr3_1:13044007-13044026 | None:intergenic | 25.0% |
| GAGATTGTTTGTGATCAATT+TGG | + | chr3_1:13042325-13042344 | Msa0349460:CDS | 30.0% | |
| TTGTTTGTGATCAATTTGGA+AGG | + | chr3_1:13042329-13042348 | Msa0349460:CDS | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | - | chr3_1:13042384-13042403 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | - | chr3_1:13042385-13042404 | None:intergenic | 30.0% | |
| CCATGTGAACTTATAATATG+TGG | - | chr3_1:13042848-13042867 | None:intergenic | 30.0% | |
| CCACATATTATAAGTTCACA+TGG | + | chr3_1:13042845-13042864 | Msa0349460:intron | 30.0% | |
| ACATTAGACATACATCATTG+TGG | - | chr3_1:13042936-13042955 | None:intergenic | 30.0% | |
| !! | AATTTGTTGAGAATCAATGC+TGG | - | chr3_1:13043027-13043046 | None:intergenic | 30.0% |
| AAATTCTCCCTCAATACTAT+TGG | + | chr3_1:13043042-13043061 | Msa0349460:intron | 30.0% | |
| ! | CCATTATCCAATAGTATTGA+GGG | - | chr3_1:13043052-13043071 | None:intergenic | 30.0% |
| TCCATTATCCAATAGTATTG+AGG | - | chr3_1:13043053-13043072 | None:intergenic | 30.0% | |
| !! | CTATTGGATAATGGATGATA+TGG | + | chr3_1:13043058-13043077 | Msa0349460:intron | 30.0% |
| ! | ACACTAGCATTATTTTCCTT+TGG | - | chr3_1:13043097-13043116 | None:intergenic | 30.0% |
| !!! | TTAGGCTTTTTGTTTTCTTC+TGG | + | chr3_1:13043133-13043152 | Msa0349460:intron | 30.0% |
| AAACTCAATTAAGAATTGGG+GGG | - | chr3_1:13043185-13043204 | None:intergenic | 30.0% | |
| TGTGAAGACATTACCATTAT+TGG | - | chr3_1:13043384-13043403 | None:intergenic | 30.0% | |
| ATAATAAGATGATGCACAAG+CGG | - | chr3_1:13043490-13043509 | None:intergenic | 30.0% | |
| !! | ACACTAAAGGAGTATTAAGA+AGG | + | chr3_1:13043568-13043587 | Msa0349460:intron | 30.0% |
| !!! | AACATTTTTGGTCAACACTT+TGG | - | chr3_1:13043752-13043771 | None:intergenic | 30.0% |
| TCAACTATATCCTTAAACAG+AGG | - | chr3_1:13043809-13043828 | None:intergenic | 30.0% | |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | + | chr3_1:13044015-13044034 | Msa0349460:intron | 30.0% |
| GAGATTGTTTGTGATCAATT+TGG | + | chr3_1:13042325-13042344 | Msa0349460:CDS | 30.0% | |
| TTGTTTGTGATCAATTTGGA+AGG | + | chr3_1:13042329-13042348 | Msa0349460:CDS | 30.0% | |
| GTCTTCATATAAAGCAAGAT+GGG | - | chr3_1:13042384-13042403 | None:intergenic | 30.0% | |
| TGTCTTCATATAAAGCAAGA+TGG | - | chr3_1:13042385-13042404 | None:intergenic | 30.0% | |
| CCATGTGAACTTATAATATG+TGG | - | chr3_1:13042848-13042867 | None:intergenic | 30.0% | |
| CCACATATTATAAGTTCACA+TGG | + | chr3_1:13042845-13042864 | Msa0349460:intron | 30.0% | |
| ACATTAGACATACATCATTG+TGG | - | chr3_1:13042936-13042955 | None:intergenic | 30.0% | |
| !! | AATTTGTTGAGAATCAATGC+TGG | - | chr3_1:13043027-13043046 | None:intergenic | 30.0% |
| AAATTCTCCCTCAATACTAT+TGG | + | chr3_1:13043042-13043061 | Msa0349460:intron | 30.0% | |
| ! | CCATTATCCAATAGTATTGA+GGG | - | chr3_1:13043052-13043071 | None:intergenic | 30.0% |
| TCCATTATCCAATAGTATTG+AGG | - | chr3_1:13043053-13043072 | None:intergenic | 30.0% | |
| !! | CTATTGGATAATGGATGATA+TGG | + | chr3_1:13043058-13043077 | Msa0349460:intron | 30.0% |
| ! | ACACTAGCATTATTTTCCTT+TGG | - | chr3_1:13043097-13043116 | None:intergenic | 30.0% |
| !!! | TTAGGCTTTTTGTTTTCTTC+TGG | + | chr3_1:13043133-13043152 | Msa0349460:intron | 30.0% |
| AAACTCAATTAAGAATTGGG+GGG | - | chr3_1:13043185-13043204 | None:intergenic | 30.0% | |
| TGTGAAGACATTACCATTAT+TGG | - | chr3_1:13043384-13043403 | None:intergenic | 30.0% | |
| ATAATAAGATGATGCACAAG+CGG | - | chr3_1:13043490-13043509 | None:intergenic | 30.0% | |
| !! | ACACTAAAGGAGTATTAAGA+AGG | + | chr3_1:13043568-13043587 | Msa0349460:intron | 30.0% |
| !!! | AACATTTTTGGTCAACACTT+TGG | - | chr3_1:13043752-13043771 | None:intergenic | 30.0% |
| TCAACTATATCCTTAAACAG+AGG | - | chr3_1:13043809-13043828 | None:intergenic | 30.0% | |
| !! | GTAGCTTTTAGTTACAGAAA+TGG | + | chr3_1:13044015-13044034 | Msa0349460:intron | 30.0% |
| ATATGAAGACATCGTTTCCA+AGG | + | chr3_1:13042394-13042413 | Msa0349460:CDS | 35.0% | |
| AGAGAGAAAGGTGATGAAAA+AGG | - | chr3_1:13042422-13042441 | None:intergenic | 35.0% | |
| AAAAAGAGAGAGAGAGAGAA+AGG | - | chr3_1:13042434-13042453 | None:intergenic | 35.0% | |
| TACCAATTCCTTTGTGTTCA+TGG | + | chr3_1:13042538-13042557 | Msa0349460:intron | 35.0% | |
| AACCATGAACACAAAGGAAT+TGG | - | chr3_1:13042543-13042562 | None:intergenic | 35.0% | |
| TTAAGCAACCATGAACACAA+AGG | - | chr3_1:13042549-13042568 | None:intergenic | 35.0% | |
| CCCTCAATACTATTGGATAA+TGG | + | chr3_1:13043049-13043068 | Msa0349460:intron | 35.0% | |
| !! | TTGGATAATGGATGATATGG+AGG | + | chr3_1:13043061-13043080 | Msa0349460:intron | 35.0% |
| TGGAGGATATTATCTTCCAA+AGG | + | chr3_1:13043078-13043097 | Msa0349460:intron | 35.0% | |
| !! | TATTTTAGACTTTCCACTCC+AGG | + | chr3_1:13043250-13043269 | Msa0349460:intron | 35.0% |
| GACATTACCATTATTGGTGA+CGG | - | chr3_1:13043378-13043397 | None:intergenic | 35.0% | |
| ! | AATGGTAATGTCTTCACATG+TGG | + | chr3_1:13043386-13043405 | Msa0349460:intron | 35.0% |
| TAATAAGATGATGCACAAGC+GGG | - | chr3_1:13043489-13043508 | None:intergenic | 35.0% | |
| TTTAGTGTCCAAACTCATAC+TGG | - | chr3_1:13043556-13043575 | None:intergenic | 35.0% | |
| AGTATGAGTTTGGACACTAA+AGG | + | chr3_1:13043555-13043574 | Msa0349460:intron | 35.0% | |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | + | chr3_1:13043571-13043590 | Msa0349460:intron | 35.0% |
| AGTATTAAGAAGGAGGTTCA+GGG | + | chr3_1:13043578-13043597 | Msa0349460:intron | 35.0% | |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | - | chr3_1:13043627-13043646 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | - | chr3_1:13043633-13043652 | None:intergenic | 35.0% |
| !!! | TACAGAAATGGTGCTTTTTC+AGG | + | chr3_1:13044027-13044046 | Msa0349460:intron | 35.0% |
| ATATGAAGACATCGTTTCCA+AGG | + | chr3_1:13042394-13042413 | Msa0349460:CDS | 35.0% | |
| AGAGAGAAAGGTGATGAAAA+AGG | - | chr3_1:13042422-13042441 | None:intergenic | 35.0% | |
| AAAAAGAGAGAGAGAGAGAA+AGG | - | chr3_1:13042434-13042453 | None:intergenic | 35.0% | |
| TACCAATTCCTTTGTGTTCA+TGG | + | chr3_1:13042538-13042557 | Msa0349460:intron | 35.0% | |
| AACCATGAACACAAAGGAAT+TGG | - | chr3_1:13042543-13042562 | None:intergenic | 35.0% | |
| TTAAGCAACCATGAACACAA+AGG | - | chr3_1:13042549-13042568 | None:intergenic | 35.0% | |
| CCCTCAATACTATTGGATAA+TGG | + | chr3_1:13043049-13043068 | Msa0349460:intron | 35.0% | |
| !! | TTGGATAATGGATGATATGG+AGG | + | chr3_1:13043061-13043080 | Msa0349460:intron | 35.0% |
| TGGAGGATATTATCTTCCAA+AGG | + | chr3_1:13043078-13043097 | Msa0349460:intron | 35.0% | |
| !! | TATTTTAGACTTTCCACTCC+AGG | + | chr3_1:13043250-13043269 | Msa0349460:intron | 35.0% |
| GACATTACCATTATTGGTGA+CGG | - | chr3_1:13043378-13043397 | None:intergenic | 35.0% | |
| ! | AATGGTAATGTCTTCACATG+TGG | + | chr3_1:13043386-13043405 | Msa0349460:intron | 35.0% |
| TAATAAGATGATGCACAAGC+GGG | - | chr3_1:13043489-13043508 | None:intergenic | 35.0% | |
| TTTAGTGTCCAAACTCATAC+TGG | - | chr3_1:13043556-13043575 | None:intergenic | 35.0% | |
| AGTATGAGTTTGGACACTAA+AGG | + | chr3_1:13043555-13043574 | Msa0349460:intron | 35.0% | |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | + | chr3_1:13043571-13043590 | Msa0349460:intron | 35.0% |
| AGTATTAAGAAGGAGGTTCA+GGG | + | chr3_1:13043578-13043597 | Msa0349460:intron | 35.0% | |
| !! | GTTAACTTTTTAGGAGGAGA+GGG | - | chr3_1:13043627-13043646 | None:intergenic | 35.0% |
| !! | TTAGCGGTTAACTTTTTAGG+AGG | - | chr3_1:13043633-13043652 | None:intergenic | 35.0% |
| !!! | TACAGAAATGGTGCTTTTTC+AGG | + | chr3_1:13044027-13044046 | Msa0349460:intron | 35.0% |
| TGCAGTTGTTGTAAGAAACG+TGG | - | chr3_1:13042181-13042200 | None:intergenic | 40.0% | |
| TCATCTTCTTCGCAGATTCA+TGG | + | chr3_1:13042301-13042320 | Msa0349460:intron | 40.0% | |
| CATCTTCTTCGCAGATTCAT+GGG | + | chr3_1:13042302-13042321 | Msa0349460:intron | 40.0% | |
| ATCTTCTTCGCAGATTCATG+GGG | + | chr3_1:13042303-13042322 | Msa0349460:intron | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | - | chr3_1:13042414-13042433 | None:intergenic | 40.0% | |
| ! | GCTGGTTACGATTTAGAACT+TGG | - | chr3_1:13043009-13043028 | None:intergenic | 40.0% |
| ATTGAGACCGTCACCAATAA+TGG | + | chr3_1:13043368-13043387 | Msa0349460:intron | 40.0% | |
| TATGTCAATCAAGTCCCTGA+AGG | + | chr3_1:13043521-13043540 | Msa0349460:intron | 40.0% | |
| GTATCGTACCAGTATGAGTT+TGG | + | chr3_1:13043545-13043564 | Msa0349460:intron | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | + | chr3_1:13043577-13043596 | Msa0349460:intron | 40.0% | |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | - | chr3_1:13043628-13043647 | None:intergenic | 40.0% |
| TTTGCAGTTGCCTCTGTTTA+AGG | + | chr3_1:13043796-13043815 | Msa0349460:intron | 40.0% | |
| GTATGTAACCCTGTCATCAT+CGG | - | chr3_1:13043893-13043912 | None:intergenic | 40.0% | |
| ! | TGTAGCTGACATTTTCTGTG+TGG | + | chr3_1:13043913-13043932 | Msa0349460:CDS | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | + | chr3_1:13043914-13043933 | Msa0349460:CDS | 40.0% |
| !! | GTACTTCTGGTCTTTTTCGT+GGG | - | chr3_1:13044059-13044078 | None:intergenic | 40.0% |
| !! | TGTACTTCTGGTCTTTTTCG+TGG | - | chr3_1:13044060-13044079 | None:intergenic | 40.0% |
| ! | CGAAAAAGACCAGAAGTACA+AGG | + | chr3_1:13044060-13044079 | Msa0349460:CDS | 40.0% |
| ! | AAAGACCAGAAGTACAAGGA+AGG | + | chr3_1:13044064-13044083 | Msa0349460:CDS | 40.0% |
| ACTTTCCTTCCTTGTACTTC+TGG | - | chr3_1:13044072-13044091 | None:intergenic | 40.0% | |
| AAGGAAAGTCTGTGCTTGAA+AGG | + | chr3_1:13044083-13044102 | Msa0349460:CDS | 40.0% | |
| TGCAGTTGTTGTAAGAAACG+TGG | - | chr3_1:13042181-13042200 | None:intergenic | 40.0% | |
| TCATCTTCTTCGCAGATTCA+TGG | + | chr3_1:13042301-13042320 | Msa0349460:intron | 40.0% | |
| CATCTTCTTCGCAGATTCAT+GGG | + | chr3_1:13042302-13042321 | Msa0349460:intron | 40.0% | |
| ATCTTCTTCGCAGATTCATG+GGG | + | chr3_1:13042303-13042322 | Msa0349460:intron | 40.0% | |
| AGGTGATGAAAAAGGAACCT+TGG | - | chr3_1:13042414-13042433 | None:intergenic | 40.0% | |
| ! | GCTGGTTACGATTTAGAACT+TGG | - | chr3_1:13043009-13043028 | None:intergenic | 40.0% |
| ATTGAGACCGTCACCAATAA+TGG | + | chr3_1:13043368-13043387 | Msa0349460:intron | 40.0% | |
| TATGTCAATCAAGTCCCTGA+AGG | + | chr3_1:13043521-13043540 | Msa0349460:intron | 40.0% | |
| GTATCGTACCAGTATGAGTT+TGG | + | chr3_1:13043545-13043564 | Msa0349460:intron | 40.0% | |
| GAGTATTAAGAAGGAGGTTC+AGG | + | chr3_1:13043577-13043596 | Msa0349460:intron | 40.0% | |
| !! | GGTTAACTTTTTAGGAGGAG+AGG | - | chr3_1:13043628-13043647 | None:intergenic | 40.0% |
| TTTGCAGTTGCCTCTGTTTA+AGG | + | chr3_1:13043796-13043815 | Msa0349460:intron | 40.0% | |
| GTATGTAACCCTGTCATCAT+CGG | - | chr3_1:13043893-13043912 | None:intergenic | 40.0% | |
| ! | TGTAGCTGACATTTTCTGTG+TGG | + | chr3_1:13043913-13043932 | Msa0349460:CDS | 40.0% |
| ! | GTAGCTGACATTTTCTGTGT+GGG | + | chr3_1:13043914-13043933 | Msa0349460:CDS | 40.0% |
| !! | GTACTTCTGGTCTTTTTCGT+GGG | - | chr3_1:13044059-13044078 | None:intergenic | 40.0% |
| !! | TGTACTTCTGGTCTTTTTCG+TGG | - | chr3_1:13044060-13044079 | None:intergenic | 40.0% |
| ! | CGAAAAAGACCAGAAGTACA+AGG | + | chr3_1:13044060-13044079 | Msa0349460:CDS | 40.0% |
| ! | AAAGACCAGAAGTACAAGGA+AGG | + | chr3_1:13044064-13044083 | Msa0349460:CDS | 40.0% |
| ACTTTCCTTCCTTGTACTTC+TGG | - | chr3_1:13044072-13044091 | None:intergenic | 40.0% | |
| AAGGAAAGTCTGTGCTTGAA+AGG | + | chr3_1:13044083-13044102 | Msa0349460:CDS | 40.0% | |
| ACTGGTACGATACACCTTCA+GGG | - | chr3_1:13043538-13043557 | None:intergenic | 45.0% | |
| TACTGGTACGATACACCTTC+AGG | - | chr3_1:13043539-13043558 | None:intergenic | 45.0% | |
| CAGAGGCAACTGCAAAGTAT+AGG | - | chr3_1:13043792-13043811 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | + | chr3_1:13043851-13043870 | Msa0349460:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | + | chr3_1:13043862-13043881 | Msa0349460:CDS | 45.0% | |
| !! | GACATTTTCTGTGTGGGTTG+TGG | + | chr3_1:13043920-13043939 | Msa0349460:CDS | 45.0% |
| ACTGGTACGATACACCTTCA+GGG | - | chr3_1:13043538-13043557 | None:intergenic | 45.0% | |
| TACTGGTACGATACACCTTC+AGG | - | chr3_1:13043539-13043558 | None:intergenic | 45.0% | |
| CAGAGGCAACTGCAAAGTAT+AGG | - | chr3_1:13043792-13043811 | None:intergenic | 45.0% | |
| GACAGCGTGAATGTTTCTCT+TGG | + | chr3_1:13043851-13043870 | Msa0349460:intron | 45.0% | |
| TGTTTCTCTTGGCGAAACAG+AGG | + | chr3_1:13043862-13043881 | Msa0349460:CDS | 45.0% | |
| !! | GACATTTTCTGTGTGGGTTG+TGG | + | chr3_1:13043920-13043939 | Msa0349460:CDS | 45.0% |
| CAACAGACACACACACACAG+CGG | + | chr3_1:13042207-13042226 | Msa0349460:five_prime_UTR | 50.0% | |
| TAGACTTTCCACTCCAGGCA+TGG | + | chr3_1:13043255-13043274 | Msa0349460:intron | 50.0% | |
| AGACTTTCCACTCCAGGCAT+GGG | + | chr3_1:13043256-13043275 | Msa0349460:intron | 50.0% | |
| GAGATAAGCTTTCCCATGCC+TGG | - | chr3_1:13043271-13043290 | None:intergenic | 50.0% | |
| AGGAGAGACCGATGATGACA+GGG | + | chr3_1:13043882-13043901 | Msa0349460:CDS | 50.0% | |
| ! | TGTGGGTTGTGGATCGATTG+TGG | + | chr3_1:13043931-13043950 | Msa0349460:CDS | 50.0% |
| ! | GTGGGTTGTGGATCGATTGT+GGG | + | chr3_1:13043932-13043951 | Msa0349460:CDS | 50.0% |
| GTTGTGGATCGATTGTGGGT+TGG | + | chr3_1:13043936-13043955 | Msa0349460:CDS | 50.0% | |
| CAACAGACACACACACACAG+CGG | + | chr3_1:13042207-13042226 | Msa0349460:five_prime_UTR | 50.0% | |
| TAGACTTTCCACTCCAGGCA+TGG | + | chr3_1:13043255-13043274 | Msa0349460:intron | 50.0% | |
| AGACTTTCCACTCCAGGCAT+GGG | + | chr3_1:13043256-13043275 | Msa0349460:intron | 50.0% | |
| GAGATAAGCTTTCCCATGCC+TGG | - | chr3_1:13043271-13043290 | None:intergenic | 50.0% | |
| AGGAGAGACCGATGATGACA+GGG | + | chr3_1:13043882-13043901 | Msa0349460:CDS | 50.0% | |
| ! | TGTGGGTTGTGGATCGATTG+TGG | + | chr3_1:13043931-13043950 | Msa0349460:CDS | 50.0% |
| ! | GTGGGTTGTGGATCGATTGT+GGG | + | chr3_1:13043932-13043951 | Msa0349460:CDS | 50.0% |
| GTTGTGGATCGATTGTGGGT+TGG | + | chr3_1:13043936-13043955 | Msa0349460:CDS | 50.0% | |
| CGCTGTGTGTGTGTGTCTGT+TGG | - | chr3_1:13042209-13042228 | None:intergenic | 55.0% | |
| ATGGGTGCGACAGTATCTGC+AGG | - | chr3_1:13042366-13042385 | None:intergenic | 55.0% | |
| AAGCTTTCCCATGCCTGGAG+TGG | - | chr3_1:13043266-13043285 | None:intergenic | 55.0% | |
| ATGATGCACAAGCGGGCATG+TGG | - | chr3_1:13043482-13043501 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+AGG | + | chr3_1:13043881-13043900 | Msa0349460:CDS | 55.0% | |
| CGCTGTGTGTGTGTGTCTGT+TGG | - | chr3_1:13042209-13042228 | None:intergenic | 55.0% | |
| ATGGGTGCGACAGTATCTGC+AGG | - | chr3_1:13042366-13042385 | None:intergenic | 55.0% | |
| AAGCTTTCCCATGCCTGGAG+TGG | - | chr3_1:13043266-13043285 | None:intergenic | 55.0% | |
| ATGATGCACAAGCGGGCATG+TGG | - | chr3_1:13043482-13043501 | None:intergenic | 55.0% | |
| GAGGAGAGACCGATGATGAC+AGG | + | chr3_1:13043881-13043900 | Msa0349460:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13042158 | 13044123 | 13042158 | ID=Msa0349460;Name=Msa0349460 |
| chr3_1 | mRNA | 13042158 | 13044123 | 13042158 | ID=Msa0349460-mRNA-1;Parent=Msa0349460;Name=Msa0349460-mRNA-1;_AED=0.33;_eAED=0.33;_QI=75|1|0.8|1|0|0|5|0|107 |
| chr3_1 | exon | 13042158 | 13042228 | 13042158 | ID=Msa0349460-mRNA-1:exon:3333;Parent=Msa0349460-mRNA-1 |
| chr3_1 | exon | 13042316 | 13042415 | 13042316 | ID=Msa0349460-mRNA-1:exon:3334;Parent=Msa0349460-mRNA-1 |
| chr3_1 | exon | 13043258 | 13043301 | 13043258 | ID=Msa0349460-mRNA-1:exon:3335;Parent=Msa0349460-mRNA-1 |
| chr3_1 | exon | 13043856 | 13043964 | 13043856 | ID=Msa0349460-mRNA-1:exon:3336;Parent=Msa0349460-mRNA-1 |
| chr3_1 | exon | 13044049 | 13044123 | 13044049 | ID=Msa0349460-mRNA-1:exon:3337;Parent=Msa0349460-mRNA-1 |
| chr3_1 | five_prime_UTR | 13042158 | 13042228 | 13042158 | ID=Msa0349460-mRNA-1:five_prime_utr;Parent=Msa0349460-mRNA-1 |
| chr3_1 | five_prime_UTR | 13042316 | 13042319 | 13042316 | ID=Msa0349460-mRNA-1:five_prime_utr;Parent=Msa0349460-mRNA-1 |
| chr3_1 | CDS | 13042320 | 13042415 | 13042320 | ID=Msa0349460-mRNA-1:cds;Parent=Msa0349460-mRNA-1 |
| chr3_1 | CDS | 13043258 | 13043301 | 13043258 | ID=Msa0349460-mRNA-1:cds;Parent=Msa0349460-mRNA-1 |
| chr3_1 | CDS | 13043856 | 13043964 | 13043856 | ID=Msa0349460-mRNA-1:cds;Parent=Msa0349460-mRNA-1 |
| chr3_1 | CDS | 13044049 | 13044123 | 13044049 | ID=Msa0349460-mRNA-1:cds;Parent=Msa0349460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
