AlfalfaGEDB | Msa1188420

M. sativa cultivar zhongmu-4 / Msa1188420

KEGG: K04733
GO: GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1188420	XP_003628252.2	97.443	352	9	0	1	352	1	352	0.0	700

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1188420	sp\|P33543\|TMKL1_ARATH	36.213	301	184	4	51	349	357	651	7.73e-60	207

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa1188420	0.800818	1.205565e-48	-8.615850e-47
Msa0011720	Msa1188420	0.814233	1.709929e-51	-8.615850e-47
Msa0038350	Msa1188420	-0.802464	5.540185e-49	-8.615850e-47
Msa0055590	Msa1188420	0.809601	1.745653e-50	-8.615850e-47
Msa0060350	Msa1188420	0.806777	6.975895e-50	-8.615850e-47
Msa0079690	Msa1188420	0.823192	1.580893e-53	-8.615850e-47
Msa0088550	Msa1188420	0.806998	6.265899e-50	-8.615850e-47
Msa0091770	Msa1188420	0.814462	1.521893e-51	-8.615850e-47
Msa0094100	Msa1188420	0.804438	2.160517e-49	-8.615850e-47
Msa0105340	Msa1188420	0.816734	4.746912e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1188420	MtrunA17_Chr8g0356041	97.443	352	9	0	1	352	1	352	0.0	700
Msa1188420	MtrunA17_Chr7g0237801	37.417	302	178	6	51	349	365	658	2.54e-58	200
Msa1188420	MtrunA17_Chr4g0005201	39.935	308	167	8	46	350	482	774	8.04e-55	192
Msa1188420	MtrunA17_Chr5g0437741	37.621	311	178	7	42	350	470	766	2.36e-54	190
Msa1188420	MtrunA17_Chr3g0108301	31.635	373	214	10	3	350	270	626	1.76e-52	183
Msa1188420	MtrunA17_Chr5g0432851	31.622	370	215	10	3	350	274	627	5.09e-51	179
Msa1188420	MtrunA17_Chr3g0128551	29.730	370	222	11	1	350	263	614	1.89e-48	172
Msa1188420	MtrunA17_Chr3g0126281	29.773	309	197	9	48	352	37	329	6.75e-46	159
Msa1188420	MtrunA17_Chr5g0428541	31.793	368	219	13	3	352	236	589	1.43e-45	164
Msa1188420	MtrunA17_Chr6g0478621	34.202	307	182	8	48	350	358	648	1.27e-44	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1188420	AT5G07620.1	66.972	327	98	4	29	350	35	356	4.76e-159	450
Msa1188420	AT5G61570.2	60.059	338	111	7	24	350	32	356	3.50e-138	397
Msa1188420	AT5G61570.1	59.531	341	111	8	24	350	32	359	1.97e-136	392
Msa1188420	AT3G24660.1	36.213	301	184	4	51	349	357	651	7.86e-61	207
Msa1188420	AT3G51740.1	36.308	325	193	6	27	350	497	808	5.23e-56	196
Msa1188420	AT5G58300.3	31.105	344	203	11	24	350	303	629	7.94e-46	166
Msa1188420	AT5G58300.1	31.105	344	203	11	24	350	303	629	7.94e-46	166
Msa1188420	AT5G58300.2	31.105	344	203	11	24	350	303	629	7.94e-46	166
Msa1188420	AT3G08680.1	29.700	367	225	10	3	350	262	614	1.29e-44	162
Msa1188420	AT3G08680.2	29.700	367	225	10	3	350	262	614	1.29e-44	162

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Find 114 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAGAAGAGGTGAAGG+AGG	0.481361	8_1:-28689129	Msa1188420:CDS
AAAGTGAGAATTTGAGATAA+TGG	0.288786	8_1:+28689352	None:intergenic
AAATTATGGAACACTTTATA+AGG	0.258863	8_1:-28689027	Msa1188420:CDS
AACATATGTACAATATCAAT+TGG	0.457177	8_1:-28687364	Msa1188420:CDS
AAGAGTTAGATCACACACGT+TGG	0.685015	8_1:+28689635	None:intergenic
AAGATTAAAGCATCCTAATT+TGG	0.207346	8_1:-28688904	Msa1188420:CDS
AAGATTATTTGGTAAAATGA+GGG	0.476702	8_1:-28686421	Msa1188420:three_prime_UTR
AAGTGAGAATTTGAGATAAT+GGG	0.298180	8_1:+28689353	None:intergenic
AATCTTACTCAATTCATAAG+AGG	0.487114	8_1:-28688810	Msa1188420:intron
AATGTGACATAGATAGATCT+AGG	0.535526	8_1:+28689669	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGACATAGATAGATCT+AGG	+	chr8_1:28686017-28686036	None:intergenic	30.0%
TGTGAAATTGATATAGGACA+AGG	+	chr8_1:28686230-28686249	None:intergenic	30.0%
GTGATTATTGTTGCAGTTTA+TGG	-	chr8_1:28686471-28686490	Msa1188420:three_prime_UTR	30.0%
GTAATAAAGTGAGATTGTTG+AGG	-	chr8_1:28686694-28686713	Msa1188420:three_prime_UTR	30.0%
AGATTCCCATGTCTATAAAA+TGG	+	chr8_1:28686858-28686877	None:intergenic	30.0%
ATCTTTGTTAGGTGTTTACT+AGG	-	chr8_1:28687066-28687085	Msa1188420:CDS	30.0%
TGCTTATAAAAAGAAACGGA+GGG	+	chr8_1:28687386-28687405	None:intergenic	30.0%
TTGCTTATAAAAAGAAACGG+AGG	+	chr8_1:28687385-28687404	None:intergenic	30.0%
GATGTATGTGGTTCATAATA+TGG	-	chr8_1:28687321-28687340	Msa1188420:CDS	30.0%
TTGCTTATAAAAAGAAACGG+AGG	-	chr8_1:28687385-28687404	Msa1188420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	28686014	28689691	28686014	ID=Msa1188420;Name=Msa1188420
chr8_1	mRNA	28686014	28689691	28686014	ID=Msa1188420-mRNA-1;Parent=Msa1188420;Name=Msa1188420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=415\|1\|1\|1\|1\|1\|2\|809\|352
chr8_1	exon	28686014	28687415	28686014	ID=Msa1188420-mRNA-1:exon:10064;Parent=Msa1188420-mRNA-1
chr8_1	exon	28688811	28689691	28688811	ID=Msa1188420-mRNA-1:exon:10063;Parent=Msa1188420-mRNA-1
chr8_1	five_prime_UTR	28689277	28689691	28689277	ID=Msa1188420-mRNA-1:five_prime_utr;Parent=Msa1188420-mRNA-1
chr8_1	CDS	28688811	28689276	28688811	ID=Msa1188420-mRNA-1:cds;Parent=Msa1188420-mRNA-1
chr8_1	CDS	28686823	28687415	28686823	ID=Msa1188420-mRNA-1:cds;Parent=Msa1188420-mRNA-1
chr8_1	three_prime_UTR	28686014	28686822	28686014	ID=Msa1188420-mRNA-1:three_prime_utr;Parent=Msa1188420-mRNA-1

Gene Sequence

>Msa1188420

ATGCTGATATTAGTTCTAGGACTAATTTCAGCTACTTTGCTAGTGATTATTGTTGCAGTTTATGGCATTTGTTACATGAAAAGATCATCAAAACATGAGACTAAAGACATAGAAAGCTTGGAAGAAAAGCAAGAAGAGGTGAAGGAGGATTTGATCATCTTTGAAGGTGGAGAGGATTTGACAATATGTGATATATTGGATGCACCAGGTGAAGTGATTGGAAAATCAAATTATGGAACACTTTATAAGGCTTTGTTGCAAAGGAGTAATAAAGTGAGATTGTTGAGGTTTTTGAGACCTGTTTGTACTACAAGAGGTGAAGAATTGGATGAAATGATTCTGTTTCTAGGAAGATTAAAGCATCCTAATTTGGTTCCTCTTTTGGGATTTTACACTGGACCAAGGGGTGAGAAGCTTCTTGTTCATCCATTTTATAGACATGGGAATCTTACTCAATTCATAAGAGATGGAAATGGAGAGAGTTACAAATGGTCAAACATATGTACAATATCAATTGGTATAGCAAAAGGATTAGAACATCTTCACACATCACATGAAAAGCCAATTATCCATGGAAACCTAAAGTCGAAAAACATCCTTTTGGATAGCTCCTATCATCCACACATCTCAGATTCAGGACTCCATCTTCTCTTGAATCCAACTGCTGGCCAAGAAATGCTTGAAAGTTCATCTGCTCAAGGCTATAAACCACCTGAACTGATCAAAATGAAGGATGCCAGCGAAGAAACCGATATATATAGTCTCGGTGTAATCTTGCTTGAATTGCTTTCAGGAAAGGAACCTATCAATGAACATCCAACTCCGGATGAGGACTTCTATTTGCCGAATTTCATGAGAAATGCTGTTCTTGGACATAGAATTTCTGATTTATATCATCCTGCTATTCTTCTCAAAAATGGCGTAGATGATGAAATTCAAGTTACGGAAGAATGTGTTCTCAAATTTTTTCAACTTGCTATGGCTTGTTGTTCACCTTCACCTTCAATTAGACCTAACATAAAGCAAGTTATTAGGAAGCTTGAAGAAATTATACATTAG

Protein sequence

>Msa1188420

MLILVLGLISATLLVIIVAVYGICYMKRSSKHETKDIESLEEKQEEVKEDLIIFEGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCTTRGEELDEMILFLGRLKHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRDGNGESYKWSNICTISIGIAKGLEHLHTSHEKPIIHGNLKSKNILLDSSYHPHISDSGLHLLLNPTAGQEMLESSSAQGYKPPELIKMKDASEETDIYSLGVILLELLSGKEPINEHPTPDEDFYLPNFMRNAVLGHRISDLYHPAILLKNGVDDEIQVTEECVLKFFQLAMACCSPSPSIRPNIKQVIRKLEEIIH*