AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540320 MtrunA17_Chr4g0017231 91.234 308 2 4 1 285 1 306 0.0 549
Msa0540320 MtrunA17_Chr2g0305051 47.773 247 124 2 29 272 34 278 9.72e-69 223
Msa0540320 MtrunA17_Chr4g0057771 37.173 191 109 4 90 270 53 242 5.84e-36 129
Msa0540320 MtrunA17_Chr1g0181801 29.885 174 101 4 91 246 136 306 8.69e-17 79.3
Msa0540320 MtrunA17_Chr7g0263541 29.310 174 102 4 91 246 61 231 5.67e-16 75.9
Msa0540320 MtrunA17_Chr8g0337051 34.906 106 60 3 89 190 44 144 2.20e-15 73.2
Msa0540320 MtrunA17_Chr4g0018221 25.698 179 103 4 90 265 78 229 4.99e-12 64.3
Msa0540320 MtrunA17_Chr5g0428971 25.140 179 104 4 90 265 55 206 7.06e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540320 AT5G47840.1 76.020 196 47 0 90 285 88 283 9.46e-109 317
Msa0540320 AT5G47840.2 70.408 196 44 1 90 285 88 269 7.34e-98 288
Msa0540320 AT5G35170.1 56.150 187 82 0 90 276 103 289 5.24e-70 227
Msa0540320 AT5G35170.2 56.150 187 82 0 90 276 103 289 5.85e-70 226
Msa0540320 AT5G63400.1 34.896 192 114 4 89 270 56 246 3.42e-33 122
Msa0540320 AT5G50370.1 33.333 165 101 3 89 245 57 220 2.12e-29 112
Msa0540320 AT5G50370.2 33.750 160 97 3 90 241 58 216 4.60e-28 108
Msa0540320 AT5G63400.2 38.235 136 79 2 89 220 56 190 1.21e-27 106
Msa0540320 AT2G37250.1 28.251 223 138 5 42 246 28 246 6.51e-19 84.7
Msa0540320 AT2G39270.1 31.395 172 101 3 91 246 89 259 1.10e-17 81.6
Msa0540320 AT5G26667.1 35.849 106 59 3 89 190 37 137 6.59e-16 75.1
Msa0540320 AT5G26667.3 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0540320 AT5G26667.2 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0540320 AT5G26667.4 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0540320 AT3G60180.1 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0540320 AT3G60180.2 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0540320 AT4G25280.1 31.304 115 76 2 90 203 77 189 7.74e-13 67.4
Msa0540320 AT4G25280.2 31.304 115 76 2 90 203 77 189 7.74e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_1:+22242638 Msa0540320:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_1:-22237553 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_1:-22242684 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_1:+22239517 Msa0540320:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_1:+22237394 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_1:+22239267 Msa0540320:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_1:+22239468 Msa0540320:CDS
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_1:+22242386 Msa0540320:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_1:+22242621 Msa0540320:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_1:+22242727 Msa0540320:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_1:+22240937 Msa0540320:CDS
GCATATGAACCACCAGTAAC+AGG 0.349980 4_1:-22242650 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_1:-22237547 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_1:+22240582 Msa0540320:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_1:-22240618 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_1:+22240606 Msa0540320:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_1:-22239547 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_1:+22242336 Msa0540320:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_1:+22239510 Msa0540320:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_1:+22237513 Msa0540320:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_1:-22239460 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_1:+22239290 Msa0540320:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_1:+22239238 Msa0540320:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_1:+22242546 Msa0540320:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_1:+22239518 Msa0540320:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_1:-22239330 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_1:-22237686 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_1:+22239209 Msa0540320:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_1:+22239225 Msa0540320:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_1:+22237426 Msa0540320:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_1:+22240586 Msa0540320:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_1:-22240688 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_1:-22240933 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_1:+22239239 Msa0540320:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_1:+22239255 Msa0540320:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_1:-22239500 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_1:+22239457 Msa0540320:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_1:-22237685 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_1:-22240928 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_1:+22237514 Msa0540320:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_1:+22237784 Msa0540320:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_1:+22239461 Msa0540320:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_1:-22240689 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_1:-22237509 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_1:+22242641 Msa0540320:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_1:+22242314 Msa0540320:CDS
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_1:+22237790 Msa0540320:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_1:+22242616 Msa0540320:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_1:+22237427 Msa0540320:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_1:-22242570 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_1:+22239296 Msa0540320:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_1:+22242592 Msa0540320:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_1:+22242711 Msa0540320:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_1:+22239242 Msa0540320:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_1:+22242364 Msa0540320:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_1:-22242325 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_1:+22237772 Msa0540320:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_1:-22242473 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_1:+22239305 Msa0540320:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_1:-22237815 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_1:+22239495 Msa0540320:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_1:+22240661 Msa0540320:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_1:+22239329 Msa0540320:CDS
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_1:-22242674 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_1:+22240607 Msa0540320:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_1:+22239297 Msa0540320:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_1:-22242649 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_1:+22242462 Msa0540320:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_1:+22240656 Msa0540320:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_1:-22239499 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_1:+22240901 Msa0540320:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_1:+22237775 Msa0540320:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_1:+22240569 Msa0540320:intron
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_1:-22237674 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_1:-22239329 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_1:+22240898 Msa0540320:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_1:+22237787 Msa0540320:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_1:-22237661 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_1:-22242646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG + chr4_1:22237717-22237736 Msa0540320:intron 0.0%
!! TTATGATTATGATTATTATT+TGG - chr4_1:22237556-22237575 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG - chr4_1:22240394-22240413 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG + chr4_1:22237427-22237446 Msa0540320:five_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG - chr4_1:22237550-22237569 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG - chr4_1:22237882-22237901 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG - chr4_1:22238050-22238069 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG - chr4_1:22238781-22238800 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG - chr4_1:22239104-22239123 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG - chr4_1:22239105-22239124 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG - chr4_1:22239186-22239205 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG - chr4_1:22239378-22239397 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG + chr4_1:22239417-22239436 Msa0540320:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG - chr4_1:22239737-22239756 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG + chr4_1:22239736-22239755 Msa0540320:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG + chr4_1:22239841-22239860 Msa0540320:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG + chr4_1:22240306-22240325 Msa0540320:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG + chr4_1:22240307-22240326 Msa0540320:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG - chr4_1:22240395-22240414 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG - chr4_1:22240936-22240955 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG + chr4_1:22240937-22240956 Msa0540320:CDS 15.0%
!! TGAAGTGTATATTAAATAAT+TGG + chr4_1:22241093-22241112 Msa0540320:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG - chr4_1:22241646-22241665 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG - chr4_1:22242020-22242039 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG + chr4_1:22237426-22237445 Msa0540320:five_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG - chr4_1:22238782-22238801 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG + chr4_1:22239108-22239127 Msa0540320:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG + chr4_1:22239115-22239134 Msa0540320:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG + chr4_1:22239884-22239903 Msa0540320:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG - chr4_1:22240062-22240081 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG - chr4_1:22240063-22240082 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG - chr4_1:22240164-22240183 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG + chr4_1:22240165-22240184 Msa0540320:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG + chr4_1:22240548-22240567 Msa0540320:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG - chr4_1:22240726-22240745 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG - chr4_1:22240727-22240746 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG + chr4_1:22240862-22240881 Msa0540320:intron 20.0%
!! TTATATCTTTATACATGGAA+AGG - chr4_1:22240931-22240950 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG + chr4_1:22241566-22241585 Msa0540320:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG - chr4_1:22241655-22241674 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG - chr4_1:22241785-22241804 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG + chr4_1:22242025-22242044 Msa0540320:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG - chr4_1:22242573-22242592 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG - chr4_1:22242687-22242706 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG + chr4_1:22242685-22242704 Msa0540320:three_prime_UTR 20.0%
! AGCATTTATCTATCTTAAAC+CGG - chr4_1:22238296-22238315 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG + chr4_1:22238438-22238457 Msa0540320:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG - chr4_1:22238444-22238463 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG - chr4_1:22238445-22238464 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG + chr4_1:22238480-22238499 Msa0540320:intron 25.0%
! ATATAATGCGATATTCCATT+TGG - chr4_1:22238849-22238868 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG - chr4_1:22239112-22239131 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG + chr4_1:22239114-22239133 Msa0540320:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG - chr4_1:22239550-22239569 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG + chr4_1:22239549-22239568 Msa0540320:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG + chr4_1:22239787-22239806 Msa0540320:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG + chr4_1:22239848-22239867 Msa0540320:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG - chr4_1:22240140-22240159 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG - chr4_1:22240290-22240309 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG - chr4_1:22240417-22240436 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG - chr4_1:22240497-22240516 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG + chr4_1:22240499-22240518 Msa0540320:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG + chr4_1:22240500-22240519 Msa0540320:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG - chr4_1:22240766-22240785 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG - chr4_1:22241071-22241090 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG - chr4_1:22241120-22241139 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG - chr4_1:22241121-22241140 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG + chr4_1:22241146-22241165 Msa0540320:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG - chr4_1:22241159-22241178 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG - chr4_1:22241160-22241179 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG + chr4_1:22241161-22241180 Msa0540320:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG + chr4_1:22241804-22241823 Msa0540320:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG + chr4_1:22241809-22241828 Msa0540320:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG + chr4_1:22241810-22241829 Msa0540320:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG - chr4_1:22242054-22242073 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG + chr4_1:22242054-22242073 Msa0540320:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG + chr4_1:22242072-22242091 Msa0540320:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG + chr4_1:22242073-22242092 Msa0540320:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG - chr4_1:22242247-22242266 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG + chr4_1:22242297-22242316 Msa0540320:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG + chr4_1:22242546-22242565 Msa0540320:three_prime_UTR 25.0%
! ATACAGAAAATGGTAAAGAA+CGG - chr4_1:22242677-22242696 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG - chr4_1:22242730-22242749 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG + chr4_1:22242727-22242746 Msa0540320:three_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG + chr4_1:22237462-22237481 Msa0540320:exon 30.0%
AGAGTAAGTGACGAAAAAAT+GGG + chr4_1:22237463-22237482 Msa0540320:exon 30.0%
TTCTTCATCATCTTCTTTGA+AGG + chr4_1:22237513-22237532 Msa0540320:CDS 30.0%
TCTTCATCATCTTCTTTGAA+GGG + chr4_1:22237514-22237533 Msa0540320:CDS 30.0%
ACCATAGAAGAATGAGAAAA+GGG - chr4_1:22237688-22237707 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG - chr4_1:22237689-22237708 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG + chr4_1:22237772-22237791 Msa0540320:intron 30.0%
ATTAGCAGCATTAGCATAAT+AGG + chr4_1:22238182-22238201 Msa0540320:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG - chr4_1:22238284-22238303 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG - chr4_1:22238285-22238304 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG + chr4_1:22238449-22238468 Msa0540320:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG + chr4_1:22238450-22238469 Msa0540320:intron 30.0%
ATGATTATCTCAAATAACCC+TGG - chr4_1:22238470-22238489 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG + chr4_1:22238481-22238500 Msa0540320:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG - chr4_1:22238804-22238823 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG + chr4_1:22239016-22239035 Msa0540320:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG + chr4_1:22239069-22239088 Msa0540320:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG - chr4_1:22239097-22239116 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG + chr4_1:22239144-22239163 Msa0540320:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG + chr4_1:22239334-22239353 Msa0540320:intron 30.0%
GATAAATTACAATGAAGCTG+AGG - chr4_1:22239620-22239639 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG - chr4_1:22239815-22239834 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG + chr4_1:22239920-22239939 Msa0540320:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG - chr4_1:22240135-22240154 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG - chr4_1:22240159-22240178 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG - chr4_1:22240691-22240710 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG + chr4_1:22240695-22240714 Msa0540320:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG - chr4_1:22240808-22240827 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG + chr4_1:22241177-22241196 Msa0540320:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG + chr4_1:22241284-22241303 Msa0540320:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG + chr4_1:22241427-22241446 Msa0540320:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG - chr4_1:22241594-22241613 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG - chr4_1:22241918-22241937 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG + chr4_1:22241951-22241970 Msa0540320:intron 30.0%
TAATAAATCCATGTGACAAG+CGG - chr4_1:22241997-22242016 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG + chr4_1:22242084-22242103 Msa0540320:intron 30.0%
AAGTCATACGATGTCAATTT+CGG + chr4_1:22242117-22242136 Msa0540320:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG + chr4_1:22242336-22242355 Msa0540320:CDS 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG + chr4_1:22242427-22242446 Msa0540320:three_prime_UTR 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG + chr4_1:22242448-22242467 Msa0540320:three_prime_UTR 30.0%
ATTATAGTTTACCTTCAGCA+AGG - chr4_1:22242476-22242495 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG + chr4_1:22242592-22242611 Msa0540320:three_prime_UTR 30.0%
! TTATGTATTCGATTTGCCAA+AGG + chr4_1:22242711-22242730 Msa0540320:three_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG - chr4_1:22237512-22237531 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG + chr4_1:22237684-22237703 Msa0540320:CDS 35.0%
CCACTTCATGTTATGATTTC+CGG + chr4_1:22237815-22237834 Msa0540320:intron 35.0%
!! AACTTACTTTCTTGGTGATG+AGG - chr4_1:22237874-22237893 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG - chr4_1:22238037-22238056 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG - chr4_1:22238249-22238268 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG - chr4_1:22238342-22238361 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG + chr4_1:22238342-22238361 Msa0540320:intron 35.0%
GGTCGATAAATGACAACAAT+GGG + chr4_1:22238343-22238362 Msa0540320:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG + chr4_1:22238623-22238642 Msa0540320:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG - chr4_1:22238805-22238824 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG + chr4_1:22238863-22238882 Msa0540320:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG + chr4_1:22238885-22238904 Msa0540320:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG - chr4_1:22238894-22238913 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG + chr4_1:22238893-22238912 Msa0540320:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG + chr4_1:22238894-22238913 Msa0540320:intron 35.0%
TTAGACATAAACTTTGGACC+TGG + chr4_1:22239022-22239041 Msa0540320:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG - chr4_1:22239065-22239084 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG + chr4_1:22239068-22239087 Msa0540320:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG + chr4_1:22239204-22239223 Msa0540320:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG + chr4_1:22239267-22239286 Msa0540320:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG + chr4_1:22239290-22239309 Msa0540320:CDS 35.0%
TGCGAAAGAATATATGGAGA+AGG + chr4_1:22239296-22239315 Msa0540320:CDS 35.0%
GCGAAAGAATATATGGAGAA+GGG + chr4_1:22239297-22239316 Msa0540320:CDS 35.0%
CCATGACAACTATTTCATCA+GGG - chr4_1:22239332-22239351 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG - chr4_1:22239333-22239352 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG + chr4_1:22239338-22239357 Msa0540320:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG + chr4_1:22239339-22239358 Msa0540320:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG + chr4_1:22239928-22239947 Msa0540320:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG + chr4_1:22239929-22239948 Msa0540320:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG - chr4_1:22239998-22240017 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG - chr4_1:22240051-22240070 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG - chr4_1:22240052-22240071 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG - chr4_1:22240053-22240072 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG - chr4_1:22240073-22240092 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG - chr4_1:22240621-22240640 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG - chr4_1:22240692-22240711 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG - chr4_1:22241065-22241084 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG - chr4_1:22241066-22241085 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG + chr4_1:22241152-22241171 Msa0540320:intron 35.0%
TACTGATAGACATGGTTGAT+TGG - chr4_1:22241335-22241354 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG - chr4_1:22241343-22241362 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG + chr4_1:22241351-22241370 Msa0540320:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG + chr4_1:22241442-22241461 Msa0540320:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG + chr4_1:22241485-22241504 Msa0540320:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG + chr4_1:22241541-22241560 Msa0540320:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG + chr4_1:22241704-22241723 Msa0540320:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG + chr4_1:22241709-22241728 Msa0540320:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG + chr4_1:22241732-22241751 Msa0540320:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG - chr4_1:22242051-22242070 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG + chr4_1:22242118-22242137 Msa0540320:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG + chr4_1:22242314-22242333 Msa0540320:CDS 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG + chr4_1:22242364-22242383 Msa0540320:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG + chr4_1:22242386-22242405 Msa0540320:CDS 35.0%
CCGGAAATCATAACATGAAG+TGG - chr4_1:22237818-22237837 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG + chr4_1:22237920-22237939 Msa0540320:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG + chr4_1:22237931-22237950 Msa0540320:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG - chr4_1:22238025-22238044 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG - chr4_1:22238250-22238269 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG + chr4_1:22238256-22238275 Msa0540320:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG + chr4_1:22238274-22238293 Msa0540320:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG + chr4_1:22238311-22238330 Msa0540320:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG - chr4_1:22238339-22238358 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG - chr4_1:22238414-22238433 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG - chr4_1:22238415-22238434 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG + chr4_1:22238484-22238503 Msa0540320:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG + chr4_1:22238485-22238504 Msa0540320:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG - chr4_1:22238652-22238671 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG - chr4_1:22238653-22238672 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG + chr4_1:22238652-22238671 Msa0540320:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG + chr4_1:22238653-22238672 Msa0540320:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG + chr4_1:22238654-22238673 Msa0540320:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG - chr4_1:22238801-22238820 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG - chr4_1:22238838-22238857 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG - chr4_1:22238841-22238860 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG - chr4_1:22238883-22238902 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG + chr4_1:22238895-22238914 Msa0540320:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG + chr4_1:22238958-22238977 Msa0540320:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG - chr4_1:22238971-22238990 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG + chr4_1:22238973-22238992 Msa0540320:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG - chr4_1:22238986-22239005 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG - chr4_1:22239057-22239076 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG - chr4_1:22239083-22239102 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG + chr4_1:22239209-22239228 Msa0540320:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG + chr4_1:22239238-22239257 Msa0540320:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG + chr4_1:22239239-22239258 Msa0540320:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG - chr4_1:22239277-22239296 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG + chr4_1:22239305-22239324 Msa0540320:CDS 40.0%
CCCTGATGAAATAGTTGTCA+TGG + chr4_1:22239329-22239348 Msa0540320:CDS 40.0%
TCATGGTATGGTAGGGTAAA+TGG + chr4_1:22239346-22239365 Msa0540320:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG + chr4_1:22239457-22239476 Msa0540320:CDS 40.0%
CAACCATTCTCTACAGAATC+TGG - chr4_1:22239463-22239482 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG + chr4_1:22239461-22239480 Msa0540320:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG + chr4_1:22239468-22239487 Msa0540320:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG + chr4_1:22239518-22239537 Msa0540320:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG + chr4_1:22239562-22239581 Msa0540320:intron 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG - chr4_1:22239764-22239783 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG + chr4_1:22239763-22239782 Msa0540320:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG - chr4_1:22239777-22239796 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG + chr4_1:22239808-22239827 Msa0540320:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG - chr4_1:22239969-22239988 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG - chr4_1:22239999-22240018 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG - chr4_1:22240204-22240223 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG - chr4_1:22240205-22240224 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG + chr4_1:22240211-22240230 Msa0540320:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG + chr4_1:22240212-22240231 Msa0540320:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG - chr4_1:22240282-22240301 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG + chr4_1:22240336-22240355 Msa0540320:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG + chr4_1:22240569-22240588 Msa0540320:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG + chr4_1:22240582-22240601 Msa0540320:CDS 40.0%
AGGAGATTAGATCCTGTTAC+TGG + chr4_1:22240606-22240625 Msa0540320:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG + chr4_1:22240607-22240626 Msa0540320:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG + chr4_1:22240656-22240675 Msa0540320:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG + chr4_1:22240661-22240680 Msa0540320:CDS 40.0%
GAACACCCATCATCAAAATG+TGG + chr4_1:22240898-22240917 Msa0540320:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG - chr4_1:22240906-22240925 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG + chr4_1:22241011-22241030 Msa0540320:intron 40.0%
TACACGTGTCAACATGAGTT+GGG + chr4_1:22241012-22241031 Msa0540320:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG - chr4_1:22241040-22241059 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG - chr4_1:22241045-22241064 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG - chr4_1:22241058-22241077 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG - chr4_1:22241217-22241236 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG - chr4_1:22241221-22241240 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG + chr4_1:22241224-22241243 Msa0540320:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG + chr4_1:22241484-22241503 Msa0540320:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG + chr4_1:22241682-22241701 Msa0540320:intron 40.0%
TTTCCTCACACCAATCATCA+GGG - chr4_1:22241695-22241714 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG - chr4_1:22241696-22241715 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG + chr4_1:22241703-22241722 Msa0540320:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG + chr4_1:22241708-22241727 Msa0540320:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG + chr4_1:22241720-22241739 Msa0540320:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG + chr4_1:22242037-22242056 Msa0540320:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG + chr4_1:22242038-22242057 Msa0540320:intron 40.0%
GTCATACGATGTCAATTTCG+GGG + chr4_1:22242119-22242138 Msa0540320:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG - chr4_1:22242328-22242347 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG + chr4_1:22242616-22242635 Msa0540320:three_prime_UTR 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG + chr4_1:22242621-22242640 Msa0540320:three_prime_UTR 40.0%
CATATGAACCACCAGTAACA+GGG - chr4_1:22242652-22242671 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG + chr4_1:22237775-22237794 Msa0540320:intron 45.0%
TGAGTTCCTTTACCAGAAGC+AGG - chr4_1:22237845-22237864 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG - chr4_1:22237932-22237951 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG - chr4_1:22237969-22237988 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG + chr4_1:22238374-22238393 Msa0540320:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG + chr4_1:22238375-22238394 Msa0540320:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG + chr4_1:22238486-22238505 Msa0540320:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG + chr4_1:22238516-22238535 Msa0540320:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG + chr4_1:22238557-22238576 Msa0540320:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG + chr4_1:22238641-22238660 Msa0540320:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG - chr4_1:22238656-22238675 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG - chr4_1:22238878-22238897 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG - chr4_1:22238949-22238968 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG - chr4_1:22238950-22238969 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG - chr4_1:22238987-22239006 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG + chr4_1:22239031-22239050 Msa0540320:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG + chr4_1:22239242-22239261 Msa0540320:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG + chr4_1:22239255-22239274 Msa0540320:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG + chr4_1:22239472-22239491 Msa0540320:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG + chr4_1:22239495-22239514 Msa0540320:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG + chr4_1:22239510-22239529 Msa0540320:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG + chr4_1:22239517-22239536 Msa0540320:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG + chr4_1:22239939-22239958 Msa0540320:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG - chr4_1:22239994-22240013 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG - chr4_1:22240010-22240029 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG - chr4_1:22240011-22240030 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG - chr4_1:22240015-22240034 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG - chr4_1:22240021-22240040 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG - chr4_1:22240024-22240043 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG - chr4_1:22240035-22240054 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG + chr4_1:22240210-22240229 Msa0540320:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG - chr4_1:22240214-22240233 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG + chr4_1:22240327-22240346 Msa0540320:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG + chr4_1:22240442-22240461 Msa0540320:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG - chr4_1:22240453-22240472 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG + chr4_1:22240586-22240605 Msa0540320:CDS 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG - chr4_1:22240657-22240676 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG - chr4_1:22240660-22240679 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG + chr4_1:22240788-22240807 Msa0540320:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG + chr4_1:22240789-22240808 Msa0540320:intron 45.0%
CACCCATCATCAAAATGTGG+AGG + chr4_1:22240901-22240920 Msa0540320:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG - chr4_1:22240907-22240926 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG + chr4_1:22241182-22241201 Msa0540320:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG + chr4_1:22241210-22241229 Msa0540320:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG - chr4_1:22241368-22241387 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG - chr4_1:22241382-22241401 None:intergenic 45.0%
CATGGGTATGCACACTGTAA+GGG + chr4_1:22241405-22241424 Msa0540320:intron 45.0%
GGTAAACACACACACATCAG+TGG + chr4_1:22241506-22241525 Msa0540320:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG + chr4_1:22241689-22241708 Msa0540320:intron 45.0%
CATGCACTCGAAACACTATC+TGG + chr4_1:22242160-22242179 Msa0540320:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG - chr4_1:22242232-22242251 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG + chr4_1:22242462-22242481 Msa0540320:three_prime_UTR 45.0%
GCATATGAACCACCAGTAAC+AGG - chr4_1:22242653-22242672 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG + chr4_1:22240301-22240320 Msa0540320:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG - chr4_1:22237677-22237696 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG - chr4_1:22237837-22237856 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG + chr4_1:22237937-22237956 Msa0540320:intron 50.0%
TTAGACATGTGTCCGACACC+GGG - chr4_1:22237968-22237987 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG - chr4_1:22238019-22238038 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG - chr4_1:22238386-22238405 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG - chr4_1:22238387-22238406 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG + chr4_1:22238386-22238405 Msa0540320:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG + chr4_1:22238387-22238406 Msa0540320:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG + chr4_1:22238562-22238581 Msa0540320:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG + chr4_1:22238563-22238582 Msa0540320:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG + chr4_1:22238570-22238589 Msa0540320:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG + chr4_1:22238584-22238603 Msa0540320:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG + chr4_1:22238640-22238659 Msa0540320:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG + chr4_1:22238642-22238661 Msa0540320:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG + chr4_1:22238643-22238662 Msa0540320:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG + chr4_1:22238831-22238850 Msa0540320:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG + chr4_1:22238989-22239008 Msa0540320:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG + chr4_1:22238992-22239011 Msa0540320:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG - chr4_1:22239050-22239069 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG + chr4_1:22239482-22239501 Msa0540320:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG - chr4_1:22239502-22239521 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG - chr4_1:22239503-22239522 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG - chr4_1:22239989-22240008 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG - chr4_1:22239995-22240014 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG - chr4_1:22240036-22240055 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG - chr4_1:22240043-22240062 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG - chr4_1:22240224-22240243 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG + chr4_1:22241738-22241757 Msa0540320:intron 50.0%
AGATGACACCGCTTGTCACA+TGG + chr4_1:22241986-22242005 Msa0540320:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG + chr4_1:22242638-22242657 Msa0540320:three_prime_UTR 50.0%
ATGAACCACCAGTAACAGGG+AGG - chr4_1:22242649-22242668 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG - chr4_1:22237664-22237683 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG + chr4_1:22237784-22237803 Msa0540320:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG + chr4_1:22237830-22237849 Msa0540320:intron 55.0%
GGTGCACCTGCTTCTGGTAA+AGG + chr4_1:22237836-22237855 Msa0540320:intron 55.0%
! TCCTCGGATTAGGCATGTCC+CGG + chr4_1:22237947-22237966 Msa0540320:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG + chr4_1:22237953-22237972 Msa0540320:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG + chr4_1:22238359-22238378 Msa0540320:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG - chr4_1:22238369-22238388 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG - chr4_1:22238370-22238389 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG + chr4_1:22238381-22238400 Msa0540320:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG + chr4_1:22238385-22238404 Msa0540320:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG + chr4_1:22238490-22238509 Msa0540320:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG - chr4_1:22238564-22238583 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG + chr4_1:22238561-22238580 Msa0540320:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG + chr4_1:22238575-22238594 Msa0540320:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG + chr4_1:22238579-22238598 Msa0540320:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG + chr4_1:22238583-22238602 Msa0540320:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG + chr4_1:22238588-22238607 Msa0540320:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG + chr4_1:22238589-22238608 Msa0540320:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG + chr4_1:22238598-22238617 Msa0540320:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG - chr4_1:22238873-22238892 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG - chr4_1:22238903-22238922 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG + chr4_1:22238996-22239015 Msa0540320:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG - chr4_1:22239043-22239062 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG + chr4_1:22239225-22239244 Msa0540320:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG - chr4_1:22240220-22240239 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG + chr4_1:22241822-22241841 Msa0540320:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG + chr4_1:22242641-22242660 Msa0540320:three_prime_UTR 55.0%
ACCGGGACATGCCTAATCCG+AGG - chr4_1:22237951-22237970 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG + chr4_1:22238322-22238341 Msa0540320:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG - chr4_1:22238331-22238350 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG + chr4_1:22238380-22238399 Msa0540320:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG + chr4_1:22238399-22238418 Msa0540320:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG + chr4_1:22238494-22238513 Msa0540320:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG + chr4_1:22238495-22238514 Msa0540320:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG + chr4_1:22238505-22238524 Msa0540320:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG + chr4_1:22238597-22238616 Msa0540320:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG - chr4_1:22241461-22241480 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG + chr4_1:22241462-22241481 Msa0540320:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG + chr4_1:22241823-22241842 Msa0540320:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG + chr4_1:22237787-22237806 Msa0540320:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG + chr4_1:22238496-22238515 Msa0540320:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG + chr4_1:22237790-22237809 Msa0540320:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG - chr4_1:22238499-22238518 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 22237405 22242769 22237405 ID=Msa0540320;Name=Msa0540320
chr4_1 mRNA 22237405 22242769 22237405 ID=Msa0540320-mRNA-1;Parent=Msa0540320;Name=Msa0540320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=76|0.83|0.85|1|1|1|7|353|285
chr4_1 exon 22237405 22237705 22237405 ID=Msa0540320-mRNA-1:exon:6237;Parent=Msa0540320-mRNA-1
chr4_1 exon 22237782 22237823 22237782 ID=Msa0540320-mRNA-1:exon:6238;Parent=Msa0540320-mRNA-1
chr4_1 exon 22239222 22239350 22239222 ID=Msa0540320-mRNA-1:exon:6239;Parent=Msa0540320-mRNA-1
chr4_1 exon 22239436 22239570 22239436 ID=Msa0540320-mRNA-1:exon:6240;Parent=Msa0540320-mRNA-1
chr4_1 exon 22240570 22240716 22240570 ID=Msa0540320-mRNA-1:exon:6241;Parent=Msa0540320-mRNA-1
chr4_1 exon 22240884 22240958 22240884 ID=Msa0540320-mRNA-1:exon:6242;Parent=Msa0540320-mRNA-1
chr4_1 exon 22242312 22242769 22242312 ID=Msa0540320-mRNA-1:exon:6243;Parent=Msa0540320-mRNA-1
chr4_1 five_prime_UTR 22237405 22237480 22237405 ID=Msa0540320-mRNA-1:five_prime_utr;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22237481 22237705 22237481 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22237782 22237823 22237782 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22239222 22239350 22239222 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22239436 22239570 22239436 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22240570 22240716 22240570 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22240884 22240958 22240884 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 CDS 22242312 22242416 22242312 ID=Msa0540320-mRNA-1:cds;Parent=Msa0540320-mRNA-1
chr4_1 three_prime_UTR 22242417 22242769 22242417 ID=Msa0540320-mRNA-1:three_prime_utr;Parent=Msa0540320-mRNA-1
Gene Sequence

>Msa0540320

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATTACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0540320

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*