AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0674300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674300 MtrunA17_Chr4g0017231 88.274 307 10 3 1 282 1 306 4.65e-161 449
Msa0674300 MtrunA17_Chr2g0305051 57.923 183 77 0 87 269 96 278 1.76e-68 223
Msa0674300 MtrunA17_Chr4g0057771 37.173 191 109 4 87 267 53 242 4.80e-36 129
Msa0674300 MtrunA17_Chr1g0181801 29.885 174 101 4 88 243 136 306 8.04e-17 79.3
Msa0674300 MtrunA17_Chr7g0263541 29.310 174 102 4 88 243 61 231 5.53e-16 75.9
Msa0674300 MtrunA17_Chr8g0337051 34.906 106 60 3 86 187 44 144 2.15e-15 73.2
Msa0674300 MtrunA17_Chr4g0018221 25.698 179 103 4 87 262 78 229 5.32e-12 64.3
Msa0674300 MtrunA17_Chr5g0428971 25.140 179 104 4 87 262 55 206 7.86e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0674300 AT5G47840.1 76.020 196 47 0 87 282 88 283 1.34e-108 316
Msa0674300 AT5G47840.2 70.408 196 44 1 87 282 88 269 8.92e-98 288
Msa0674300 AT5G35170.2 56.150 187 82 0 87 273 103 289 6.38e-70 226
Msa0674300 AT5G35170.1 56.150 187 82 0 87 273 103 289 6.42e-70 226
Msa0674300 AT5G63400.1 34.896 192 114 4 86 267 56 246 2.85e-33 122
Msa0674300 AT5G50370.1 33.333 165 101 3 86 242 57 220 2.36e-29 112
Msa0674300 AT5G50370.2 33.750 160 97 3 87 238 58 216 4.77e-28 108
Msa0674300 AT5G63400.2 38.235 136 79 2 86 217 56 190 1.13e-27 106
Msa0674300 AT2G37250.1 27.490 251 153 7 11 243 7 246 9.88e-19 84.3
Msa0674300 AT2G39270.1 31.395 172 101 3 88 243 89 259 1.12e-17 81.6
Msa0674300 AT5G26667.1 35.849 106 59 3 86 187 37 137 5.89e-16 75.1
Msa0674300 AT5G26667.3 35.849 106 59 3 86 187 37 137 6.99e-16 74.7
Msa0674300 AT5G26667.2 35.849 106 59 3 86 187 37 137 6.99e-16 74.7
Msa0674300 AT5G26667.4 35.849 106 59 3 86 187 37 137 6.99e-16 74.7
Msa0674300 AT3G60180.1 25.806 217 121 5 49 262 17 196 2.07e-13 68.2
Msa0674300 AT3G60180.2 25.806 217 121 5 49 262 17 196 2.07e-13 68.2
Msa0674300 AT4G25280.1 31.304 115 76 2 87 200 77 189 8.38e-13 67.4
Msa0674300 AT4G25280.2 31.304 115 76 2 87 200 77 189 8.38e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_4:+21662307 Msa0674300:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_4:-21657235 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_4:-21662353 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_4:+21659186 Msa0674300:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_4:+21657076 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_4:+21658936 Msa0674300:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_4:+21659137 Msa0674300:CDS
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_4:+21662055 Msa0674300:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_4:+21662290 Msa0674300:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_4:+21662396 Msa0674300:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_4:+21660606 Msa0674300:CDS
GCATATGAACCACCAGTAAC+AGG 0.349980 4_4:-21662319 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_4:-21657229 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_4:+21660251 Msa0674300:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_4:-21660287 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_4:+21660275 Msa0674300:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_4:-21659216 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_4:+21662005 Msa0674300:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_4:+21659179 Msa0674300:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_4:+21657195 Msa0674300:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_4:-21659129 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_4:+21658959 Msa0674300:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_4:+21658907 Msa0674300:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_4:+21662215 Msa0674300:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_4:+21659187 Msa0674300:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_4:-21658999 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_4:-21657359 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_4:+21658878 Msa0674300:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_4:+21658894 Msa0674300:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_4:+21657108 Msa0674300:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_4:+21660255 Msa0674300:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_4:-21660357 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_4:-21660602 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_4:+21658908 Msa0674300:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_4:+21658924 Msa0674300:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_4:-21659169 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_4:+21659126 Msa0674300:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_4:-21657358 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_4:-21660597 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_4:+21657196 Msa0674300:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_4:+21657457 Msa0674300:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_4:+21659130 Msa0674300:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_4:-21660358 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_4:-21657191 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_4:+21662310 Msa0674300:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_4:+21661983 Msa0674300:CDS
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_4:+21657463 Msa0674300:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_4:+21662285 Msa0674300:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_4:+21657109 Msa0674300:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_4:-21662239 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_4:+21658965 Msa0674300:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_4:+21662261 Msa0674300:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_4:+21662380 Msa0674300:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_4:+21658911 Msa0674300:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_4:+21662033 Msa0674300:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_4:-21661994 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_4:+21657445 Msa0674300:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_4:-21662142 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_4:+21658974 Msa0674300:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_4:-21657488 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_4:+21659164 Msa0674300:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_4:+21660330 Msa0674300:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_4:+21658998 Msa0674300:CDS
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_4:-21662343 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_4:+21660276 Msa0674300:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_4:+21658966 Msa0674300:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_4:-21662318 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_4:+21662131 Msa0674300:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_4:+21660325 Msa0674300:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_4:-21659168 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_4:+21660570 Msa0674300:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_4:+21657448 Msa0674300:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_4:+21660238 Msa0674300:intron
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_4:-21657347 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_4:-21658998 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_4:+21660567 Msa0674300:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_4:+21657460 Msa0674300:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_4:-21657334 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_4:-21662315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATTATGATTATTATT+TGG - chr4_4:21657238-21657257 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG - chr4_4:21660063-21660082 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG + chr4_4:21657109-21657128 Msa0674300:five_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG - chr4_4:21657232-21657251 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG - chr4_4:21657555-21657574 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG - chr4_4:21657719-21657738 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG - chr4_4:21658450-21658469 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG - chr4_4:21658773-21658792 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG - chr4_4:21658774-21658793 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG - chr4_4:21658855-21658874 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG - chr4_4:21659047-21659066 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG + chr4_4:21659086-21659105 Msa0674300:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG - chr4_4:21659406-21659425 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG + chr4_4:21659405-21659424 Msa0674300:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG + chr4_4:21659510-21659529 Msa0674300:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG + chr4_4:21659975-21659994 Msa0674300:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG + chr4_4:21659976-21659995 Msa0674300:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG - chr4_4:21660064-21660083 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG - chr4_4:21660605-21660624 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG + chr4_4:21660606-21660625 Msa0674300:CDS 15.0%
!! TGAAGTGTATATTAAATAAT+TGG + chr4_4:21660762-21660781 Msa0674300:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG - chr4_4:21661315-21661334 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG - chr4_4:21661689-21661708 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG + chr4_4:21657108-21657127 Msa0674300:five_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG - chr4_4:21658451-21658470 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG + chr4_4:21658777-21658796 Msa0674300:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG + chr4_4:21658784-21658803 Msa0674300:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG + chr4_4:21659553-21659572 Msa0674300:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG - chr4_4:21659731-21659750 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG - chr4_4:21659732-21659751 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG - chr4_4:21659833-21659852 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG + chr4_4:21659834-21659853 Msa0674300:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG + chr4_4:21660217-21660236 Msa0674300:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG - chr4_4:21660395-21660414 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG - chr4_4:21660396-21660415 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG + chr4_4:21660531-21660550 Msa0674300:intron 20.0%
!! TTATATCTTTATACATGGAA+AGG - chr4_4:21660600-21660619 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG + chr4_4:21661235-21661254 Msa0674300:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG - chr4_4:21661324-21661343 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG - chr4_4:21661454-21661473 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG + chr4_4:21661694-21661713 Msa0674300:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG - chr4_4:21662242-21662261 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG - chr4_4:21662356-21662375 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG + chr4_4:21662354-21662373 Msa0674300:three_prime_UTR 20.0%
! AGCATTTATCTATCTTAAAC+CGG - chr4_4:21657965-21657984 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG + chr4_4:21658107-21658126 Msa0674300:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG - chr4_4:21658113-21658132 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG - chr4_4:21658114-21658133 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG + chr4_4:21658149-21658168 Msa0674300:intron 25.0%
! ATATAATGCGATATTCCATT+TGG - chr4_4:21658518-21658537 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG - chr4_4:21658781-21658800 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG + chr4_4:21658783-21658802 Msa0674300:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG - chr4_4:21659219-21659238 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG + chr4_4:21659218-21659237 Msa0674300:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG + chr4_4:21659456-21659475 Msa0674300:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG + chr4_4:21659517-21659536 Msa0674300:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG - chr4_4:21659809-21659828 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG - chr4_4:21659959-21659978 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG - chr4_4:21660086-21660105 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG - chr4_4:21660166-21660185 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG + chr4_4:21660168-21660187 Msa0674300:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG + chr4_4:21660169-21660188 Msa0674300:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG - chr4_4:21660435-21660454 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG - chr4_4:21660740-21660759 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG - chr4_4:21660789-21660808 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG - chr4_4:21660790-21660809 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG + chr4_4:21660815-21660834 Msa0674300:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG - chr4_4:21660828-21660847 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG - chr4_4:21660829-21660848 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG + chr4_4:21660830-21660849 Msa0674300:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG + chr4_4:21661473-21661492 Msa0674300:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG + chr4_4:21661478-21661497 Msa0674300:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG + chr4_4:21661479-21661498 Msa0674300:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG - chr4_4:21661723-21661742 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG + chr4_4:21661723-21661742 Msa0674300:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG + chr4_4:21661741-21661760 Msa0674300:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG + chr4_4:21661742-21661761 Msa0674300:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG - chr4_4:21661916-21661935 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG + chr4_4:21661966-21661985 Msa0674300:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG + chr4_4:21662215-21662234 Msa0674300:three_prime_UTR 25.0%
! ATACAGAAAATGGTAAAGAA+CGG - chr4_4:21662346-21662365 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG - chr4_4:21662399-21662418 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG + chr4_4:21662396-21662415 Msa0674300:three_prime_UTR 25.0%
AAGAGTAACTGACGAAAAAA+TGG + chr4_4:21657144-21657163 Msa0674300:exon 30.0%
AGAGTAACTGACGAAAAAAT+GGG + chr4_4:21657145-21657164 Msa0674300:exon 30.0%
TTCTTCATCATCTTCTTTGA+AGG + chr4_4:21657195-21657214 Msa0674300:CDS 30.0%
TCTTCATCATCTTCTTTGAA+GGG + chr4_4:21657196-21657215 Msa0674300:CDS 30.0%
ACCATAGAAGAATGAGAAAA+GGG - chr4_4:21657361-21657380 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG - chr4_4:21657362-21657381 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG + chr4_4:21657445-21657464 Msa0674300:intron 30.0%
ATTAGCAGCATTAGCATAAT+AGG + chr4_4:21657851-21657870 Msa0674300:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG - chr4_4:21657953-21657972 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG - chr4_4:21657954-21657973 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG + chr4_4:21658118-21658137 Msa0674300:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG + chr4_4:21658119-21658138 Msa0674300:intron 30.0%
ATGATTATCTCAAATAACCC+TGG - chr4_4:21658139-21658158 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG + chr4_4:21658150-21658169 Msa0674300:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG - chr4_4:21658473-21658492 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG + chr4_4:21658685-21658704 Msa0674300:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG + chr4_4:21658738-21658757 Msa0674300:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG - chr4_4:21658766-21658785 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG + chr4_4:21658813-21658832 Msa0674300:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG + chr4_4:21659003-21659022 Msa0674300:intron 30.0%
GATAAATTACAATGAAGCTG+AGG - chr4_4:21659289-21659308 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG - chr4_4:21659484-21659503 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG + chr4_4:21659589-21659608 Msa0674300:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG - chr4_4:21659804-21659823 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG - chr4_4:21659828-21659847 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG - chr4_4:21660360-21660379 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG + chr4_4:21660364-21660383 Msa0674300:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG - chr4_4:21660477-21660496 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG + chr4_4:21660846-21660865 Msa0674300:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG + chr4_4:21660953-21660972 Msa0674300:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG + chr4_4:21661096-21661115 Msa0674300:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG - chr4_4:21661263-21661282 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG - chr4_4:21661587-21661606 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG + chr4_4:21661620-21661639 Msa0674300:intron 30.0%
TAATAAATCCATGTGACAAG+CGG - chr4_4:21661666-21661685 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG + chr4_4:21661753-21661772 Msa0674300:intron 30.0%
AAGTCATACGATGTCAATTT+CGG + chr4_4:21661786-21661805 Msa0674300:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG + chr4_4:21662005-21662024 Msa0674300:CDS 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG + chr4_4:21662096-21662115 Msa0674300:three_prime_UTR 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG + chr4_4:21662117-21662136 Msa0674300:three_prime_UTR 30.0%
ATTATAGTTTACCTTCAGCA+AGG - chr4_4:21662145-21662164 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG + chr4_4:21662261-21662280 Msa0674300:three_prime_UTR 30.0%
! TTATGTATTCGATTTGCCAA+AGG + chr4_4:21662380-21662399 Msa0674300:three_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG - chr4_4:21657194-21657213 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG + chr4_4:21657357-21657376 Msa0674300:CDS 35.0%
CCACTTCATGTTATGATTTC+CGG + chr4_4:21657488-21657507 Msa0674300:intron 35.0%
!! AACTTACTTTCTTGGTGATG+AGG - chr4_4:21657547-21657566 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG - chr4_4:21657706-21657725 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG - chr4_4:21657918-21657937 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG - chr4_4:21658011-21658030 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG + chr4_4:21658011-21658030 Msa0674300:intron 35.0%
GGTCGATAAATGACAACAAT+GGG + chr4_4:21658012-21658031 Msa0674300:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG + chr4_4:21658292-21658311 Msa0674300:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG - chr4_4:21658474-21658493 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG + chr4_4:21658532-21658551 Msa0674300:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG + chr4_4:21658554-21658573 Msa0674300:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG - chr4_4:21658563-21658582 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG + chr4_4:21658562-21658581 Msa0674300:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG + chr4_4:21658563-21658582 Msa0674300:intron 35.0%
TTAGACATAAACTTTGGACC+TGG + chr4_4:21658691-21658710 Msa0674300:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG - chr4_4:21658734-21658753 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG + chr4_4:21658737-21658756 Msa0674300:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG + chr4_4:21658873-21658892 Msa0674300:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG + chr4_4:21658936-21658955 Msa0674300:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG + chr4_4:21658959-21658978 Msa0674300:CDS 35.0%
TGCGAAAGAATATATGGAGA+AGG + chr4_4:21658965-21658984 Msa0674300:CDS 35.0%
GCGAAAGAATATATGGAGAA+GGG + chr4_4:21658966-21658985 Msa0674300:CDS 35.0%
CCATGACAACTATTTCATCA+GGG - chr4_4:21659001-21659020 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG - chr4_4:21659002-21659021 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG + chr4_4:21659007-21659026 Msa0674300:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG + chr4_4:21659008-21659027 Msa0674300:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG + chr4_4:21659597-21659616 Msa0674300:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG + chr4_4:21659598-21659617 Msa0674300:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG - chr4_4:21659667-21659686 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG - chr4_4:21659720-21659739 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG - chr4_4:21659721-21659740 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG - chr4_4:21659722-21659741 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG - chr4_4:21659742-21659761 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG - chr4_4:21660290-21660309 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG - chr4_4:21660361-21660380 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG - chr4_4:21660734-21660753 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG - chr4_4:21660735-21660754 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG + chr4_4:21660821-21660840 Msa0674300:intron 35.0%
TACTGATAGACATGGTTGAT+TGG - chr4_4:21661004-21661023 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG - chr4_4:21661012-21661031 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG + chr4_4:21661020-21661039 Msa0674300:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG + chr4_4:21661111-21661130 Msa0674300:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG + chr4_4:21661154-21661173 Msa0674300:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG + chr4_4:21661210-21661229 Msa0674300:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG + chr4_4:21661373-21661392 Msa0674300:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG + chr4_4:21661378-21661397 Msa0674300:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG + chr4_4:21661401-21661420 Msa0674300:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG - chr4_4:21661720-21661739 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG + chr4_4:21661787-21661806 Msa0674300:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG + chr4_4:21661983-21662002 Msa0674300:CDS 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG + chr4_4:21662033-21662052 Msa0674300:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG + chr4_4:21662055-21662074 Msa0674300:CDS 35.0%
CCGGAAATCATAACATGAAG+TGG - chr4_4:21657491-21657510 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG + chr4_4:21657589-21657608 Msa0674300:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG + chr4_4:21657600-21657619 Msa0674300:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG - chr4_4:21657694-21657713 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG - chr4_4:21657919-21657938 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG + chr4_4:21657925-21657944 Msa0674300:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG + chr4_4:21657943-21657962 Msa0674300:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG + chr4_4:21657980-21657999 Msa0674300:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG - chr4_4:21658008-21658027 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG - chr4_4:21658083-21658102 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG - chr4_4:21658084-21658103 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG + chr4_4:21658153-21658172 Msa0674300:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG + chr4_4:21658154-21658173 Msa0674300:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG - chr4_4:21658321-21658340 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG - chr4_4:21658322-21658341 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG + chr4_4:21658321-21658340 Msa0674300:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG + chr4_4:21658322-21658341 Msa0674300:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG + chr4_4:21658323-21658342 Msa0674300:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG - chr4_4:21658470-21658489 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG - chr4_4:21658507-21658526 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG - chr4_4:21658510-21658529 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG - chr4_4:21658552-21658571 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG + chr4_4:21658564-21658583 Msa0674300:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG + chr4_4:21658627-21658646 Msa0674300:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG - chr4_4:21658640-21658659 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG + chr4_4:21658642-21658661 Msa0674300:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG - chr4_4:21658655-21658674 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG - chr4_4:21658726-21658745 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG - chr4_4:21658752-21658771 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG + chr4_4:21658878-21658897 Msa0674300:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG + chr4_4:21658907-21658926 Msa0674300:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG + chr4_4:21658908-21658927 Msa0674300:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG - chr4_4:21658946-21658965 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG + chr4_4:21658974-21658993 Msa0674300:CDS 40.0%
CCCTGATGAAATAGTTGTCA+TGG + chr4_4:21658998-21659017 Msa0674300:CDS 40.0%
TCATGGTATGGTAGGGTAAA+TGG + chr4_4:21659015-21659034 Msa0674300:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG + chr4_4:21659126-21659145 Msa0674300:CDS 40.0%
CAACCATTCTCTACAGAATC+TGG - chr4_4:21659132-21659151 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG + chr4_4:21659130-21659149 Msa0674300:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG + chr4_4:21659137-21659156 Msa0674300:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG + chr4_4:21659187-21659206 Msa0674300:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG + chr4_4:21659231-21659250 Msa0674300:intron 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG - chr4_4:21659433-21659452 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG + chr4_4:21659432-21659451 Msa0674300:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG - chr4_4:21659446-21659465 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG + chr4_4:21659477-21659496 Msa0674300:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG - chr4_4:21659638-21659657 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG - chr4_4:21659668-21659687 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG - chr4_4:21659873-21659892 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG - chr4_4:21659874-21659893 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG + chr4_4:21659880-21659899 Msa0674300:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG + chr4_4:21659881-21659900 Msa0674300:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG - chr4_4:21659951-21659970 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG + chr4_4:21660005-21660024 Msa0674300:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG + chr4_4:21660238-21660257 Msa0674300:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG + chr4_4:21660251-21660270 Msa0674300:CDS 40.0%
AGGAGATTAGATCCTGTTAC+TGG + chr4_4:21660275-21660294 Msa0674300:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG + chr4_4:21660276-21660295 Msa0674300:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG + chr4_4:21660325-21660344 Msa0674300:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG + chr4_4:21660330-21660349 Msa0674300:CDS 40.0%
GAACACCCATCATCAAAATG+TGG + chr4_4:21660567-21660586 Msa0674300:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG - chr4_4:21660575-21660594 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG + chr4_4:21660680-21660699 Msa0674300:intron 40.0%
TACACGTGTCAACATGAGTT+GGG + chr4_4:21660681-21660700 Msa0674300:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG - chr4_4:21660709-21660728 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG - chr4_4:21660714-21660733 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG - chr4_4:21660727-21660746 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG - chr4_4:21660886-21660905 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG - chr4_4:21660890-21660909 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG + chr4_4:21660893-21660912 Msa0674300:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG + chr4_4:21661153-21661172 Msa0674300:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG + chr4_4:21661351-21661370 Msa0674300:intron 40.0%
TTTCCTCACACCAATCATCA+GGG - chr4_4:21661364-21661383 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG - chr4_4:21661365-21661384 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG + chr4_4:21661372-21661391 Msa0674300:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG + chr4_4:21661377-21661396 Msa0674300:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG + chr4_4:21661389-21661408 Msa0674300:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG + chr4_4:21661706-21661725 Msa0674300:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG + chr4_4:21661707-21661726 Msa0674300:intron 40.0%
GTCATACGATGTCAATTTCG+GGG + chr4_4:21661788-21661807 Msa0674300:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG - chr4_4:21661997-21662016 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG + chr4_4:21662285-21662304 Msa0674300:three_prime_UTR 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG + chr4_4:21662290-21662309 Msa0674300:three_prime_UTR 40.0%
CATATGAACCACCAGTAACA+GGG - chr4_4:21662321-21662340 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG + chr4_4:21657448-21657467 Msa0674300:intron 45.0%
TGAGTTCCTTTACCAGAAGC+AGG - chr4_4:21657518-21657537 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG - chr4_4:21657601-21657620 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG - chr4_4:21657638-21657657 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG + chr4_4:21658043-21658062 Msa0674300:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG + chr4_4:21658044-21658063 Msa0674300:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG + chr4_4:21658155-21658174 Msa0674300:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG + chr4_4:21658185-21658204 Msa0674300:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG + chr4_4:21658226-21658245 Msa0674300:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG + chr4_4:21658310-21658329 Msa0674300:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG - chr4_4:21658325-21658344 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG - chr4_4:21658547-21658566 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG - chr4_4:21658618-21658637 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG - chr4_4:21658619-21658638 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG - chr4_4:21658656-21658675 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG + chr4_4:21658700-21658719 Msa0674300:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG + chr4_4:21658911-21658930 Msa0674300:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG + chr4_4:21658924-21658943 Msa0674300:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG + chr4_4:21659141-21659160 Msa0674300:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG + chr4_4:21659164-21659183 Msa0674300:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG + chr4_4:21659179-21659198 Msa0674300:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG + chr4_4:21659186-21659205 Msa0674300:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG + chr4_4:21659608-21659627 Msa0674300:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG - chr4_4:21659663-21659682 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG - chr4_4:21659679-21659698 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG - chr4_4:21659680-21659699 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG - chr4_4:21659684-21659703 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG - chr4_4:21659690-21659709 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG - chr4_4:21659693-21659712 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG - chr4_4:21659704-21659723 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG + chr4_4:21659879-21659898 Msa0674300:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG - chr4_4:21659883-21659902 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG + chr4_4:21659996-21660015 Msa0674300:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG + chr4_4:21660111-21660130 Msa0674300:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG - chr4_4:21660122-21660141 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG + chr4_4:21660255-21660274 Msa0674300:CDS 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG - chr4_4:21660326-21660345 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG - chr4_4:21660329-21660348 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG + chr4_4:21660457-21660476 Msa0674300:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG + chr4_4:21660458-21660477 Msa0674300:intron 45.0%
CACCCATCATCAAAATGTGG+AGG + chr4_4:21660570-21660589 Msa0674300:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG - chr4_4:21660576-21660595 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG + chr4_4:21660851-21660870 Msa0674300:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG + chr4_4:21660879-21660898 Msa0674300:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG - chr4_4:21661037-21661056 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG - chr4_4:21661051-21661070 None:intergenic 45.0%
TGCTTTCTACTGCGGTAACA+AGG - chr4_4:21661056-21661075 None:intergenic 45.0%
TGTTACCGCAGTAGAAAGCA+TGG + chr4_4:21661056-21661075 Msa0674300:intron 45.0%
! GTTACCGCAGTAGAAAGCAT+GGG + chr4_4:21661057-21661076 Msa0674300:intron 45.0%
CATACCCATGCTTTCTACTG+CGG - chr4_4:21661064-21661083 None:intergenic 45.0%
GGTAAACACACACACATCAG+TGG + chr4_4:21661175-21661194 Msa0674300:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG + chr4_4:21661358-21661377 Msa0674300:intron 45.0%
CATGCACTCGAAACACTATC+TGG + chr4_4:21661829-21661848 Msa0674300:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG - chr4_4:21661901-21661920 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG + chr4_4:21662131-21662150 Msa0674300:three_prime_UTR 45.0%
GCATATGAACCACCAGTAAC+AGG - chr4_4:21662322-21662341 None:intergenic 45.0%
!!! CTTAATTTAATTTTATTTAT+TGG + chr4_4:21657390-21657409 Msa0674300:intron 5.0%
!!! CAATTTTAAAATAAAATTAA+AGG + chr4_4:21659970-21659989 Msa0674300:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG - chr4_4:21657350-21657369 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG - chr4_4:21657510-21657529 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG + chr4_4:21657606-21657625 Msa0674300:intron 50.0%
TTAGACATGTGTCCGACACC+GGG - chr4_4:21657637-21657656 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG - chr4_4:21657688-21657707 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG - chr4_4:21658055-21658074 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG - chr4_4:21658056-21658075 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG + chr4_4:21658055-21658074 Msa0674300:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG + chr4_4:21658056-21658075 Msa0674300:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG + chr4_4:21658231-21658250 Msa0674300:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG + chr4_4:21658232-21658251 Msa0674300:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG + chr4_4:21658239-21658258 Msa0674300:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG + chr4_4:21658253-21658272 Msa0674300:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG + chr4_4:21658309-21658328 Msa0674300:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG + chr4_4:21658311-21658330 Msa0674300:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG + chr4_4:21658312-21658331 Msa0674300:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG + chr4_4:21658500-21658519 Msa0674300:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG + chr4_4:21658658-21658677 Msa0674300:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG + chr4_4:21658661-21658680 Msa0674300:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG - chr4_4:21658719-21658738 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG + chr4_4:21659151-21659170 Msa0674300:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG - chr4_4:21659171-21659190 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG - chr4_4:21659172-21659191 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG - chr4_4:21659658-21659677 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG - chr4_4:21659664-21659683 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG - chr4_4:21659705-21659724 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG - chr4_4:21659712-21659731 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG - chr4_4:21659893-21659912 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG + chr4_4:21661407-21661426 Msa0674300:intron 50.0%
AGATGACACCGCTTGTCACA+TGG + chr4_4:21661655-21661674 Msa0674300:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG + chr4_4:21662307-21662326 Msa0674300:three_prime_UTR 50.0%
ATGAACCACCAGTAACAGGG+AGG - chr4_4:21662318-21662337 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG - chr4_4:21657337-21657356 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG + chr4_4:21657457-21657476 Msa0674300:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG + chr4_4:21657503-21657522 Msa0674300:intron 55.0%
GGTGCACCTGCTTCTGGTAA+AGG + chr4_4:21657509-21657528 Msa0674300:intron 55.0%
! TCCTCGGATTAGGCATGTCC+CGG + chr4_4:21657616-21657635 Msa0674300:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG + chr4_4:21657622-21657641 Msa0674300:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG + chr4_4:21658028-21658047 Msa0674300:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG - chr4_4:21658038-21658057 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG - chr4_4:21658039-21658058 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG + chr4_4:21658050-21658069 Msa0674300:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG + chr4_4:21658054-21658073 Msa0674300:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG + chr4_4:21658159-21658178 Msa0674300:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG - chr4_4:21658233-21658252 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG + chr4_4:21658230-21658249 Msa0674300:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG + chr4_4:21658244-21658263 Msa0674300:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG + chr4_4:21658248-21658267 Msa0674300:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG + chr4_4:21658252-21658271 Msa0674300:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG + chr4_4:21658257-21658276 Msa0674300:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG + chr4_4:21658258-21658277 Msa0674300:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG + chr4_4:21658267-21658286 Msa0674300:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG - chr4_4:21658542-21658561 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG - chr4_4:21658572-21658591 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG + chr4_4:21658665-21658684 Msa0674300:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG - chr4_4:21658712-21658731 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG + chr4_4:21658894-21658913 Msa0674300:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG - chr4_4:21659889-21659908 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG + chr4_4:21661491-21661510 Msa0674300:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG + chr4_4:21662310-21662329 Msa0674300:three_prime_UTR 55.0%
ACCGGGACATGCCTAATCCG+AGG - chr4_4:21657620-21657639 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG + chr4_4:21657991-21658010 Msa0674300:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG - chr4_4:21658000-21658019 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG + chr4_4:21658049-21658068 Msa0674300:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG + chr4_4:21658068-21658087 Msa0674300:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG + chr4_4:21658163-21658182 Msa0674300:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG + chr4_4:21658164-21658183 Msa0674300:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG + chr4_4:21658174-21658193 Msa0674300:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG + chr4_4:21658266-21658285 Msa0674300:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG - chr4_4:21661130-21661149 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG + chr4_4:21661131-21661150 Msa0674300:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG + chr4_4:21661492-21661511 Msa0674300:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG + chr4_4:21657460-21657479 Msa0674300:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG + chr4_4:21658165-21658184 Msa0674300:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG + chr4_4:21657463-21657482 Msa0674300:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG - chr4_4:21658168-21658187 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 21657087 21662438 21657087 ID=Msa0674300;Name=Msa0674300
chr4_4 mRNA 21657087 21662438 21657087 ID=Msa0674300-mRNA-1;Parent=Msa0674300;Name=Msa0674300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=76|0.83|0.85|1|0.83|0.85|7|353|282
chr4_4 exon 21657087 21657378 21657087 ID=Msa0674300-mRNA-1:exon:6161;Parent=Msa0674300-mRNA-1
chr4_4 exon 21657455 21657496 21657455 ID=Msa0674300-mRNA-1:exon:6162;Parent=Msa0674300-mRNA-1
chr4_4 exon 21658891 21659019 21658891 ID=Msa0674300-mRNA-1:exon:6163;Parent=Msa0674300-mRNA-1
chr4_4 exon 21659105 21659239 21659105 ID=Msa0674300-mRNA-1:exon:6164;Parent=Msa0674300-mRNA-1
chr4_4 exon 21660239 21660385 21660239 ID=Msa0674300-mRNA-1:exon:6165;Parent=Msa0674300-mRNA-1
chr4_4 exon 21660553 21660627 21660553 ID=Msa0674300-mRNA-1:exon:6166;Parent=Msa0674300-mRNA-1
chr4_4 exon 21661981 21662438 21661981 ID=Msa0674300-mRNA-1:exon:6167;Parent=Msa0674300-mRNA-1
chr4_4 five_prime_UTR 21657087 21657162 21657087 ID=Msa0674300-mRNA-1:five_prime_utr;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21657163 21657378 21657163 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21657455 21657496 21657455 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21658891 21659019 21658891 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21659105 21659239 21659105 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21660239 21660385 21660239 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21660553 21660627 21660553 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 CDS 21661981 21662085 21661981 ID=Msa0674300-mRNA-1:cds;Parent=Msa0674300-mRNA-1
chr4_4 three_prime_UTR 21662086 21662438 21662086 ID=Msa0674300-mRNA-1:three_prime_utr;Parent=Msa0674300-mRNA-1
Gene Sequence

>Msa0674300

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATTACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0674300

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*