AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207690 MtrunA17_Chr4g0056651 91.429 210 4 1 1 210 112 307 1.79e-134 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207690 AT4G11980.1 71.981 207 44 1 1 207 110 302 2.36e-104 303

Find 64 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTTCTATAACTTATT+TGG 0.038547 8_1:-65444057 Msa1207690:three_prime_UTR
TCCTGTGGGAAGAATTATTT+TGG 0.176950 8_1:-65445280 Msa1207690:CDS
AGAAGGATTATTGCCTTCTT+TGG 0.207755 8_1:-65444220 Msa1207690:CDS
GGTTGACCTCACTGCTTTCC+TGG 0.256840 8_1:-65444992 Msa1207690:CDS
TTATTATGTCTAGCTCCTTA+TGG 0.271990 8_1:-65444075 Msa1207690:three_prime_UTR
AGGCAATAATCCTTCTTTCT+TGG 0.280187 8_1:+65444227 None:intergenic
TGAACATGGGGAGCTGATTA+AGG 0.331333 8_1:-65444331 Msa1207690:CDS
TTCTGCGTAGCATTACAATT+AGG 0.352167 8_1:+65444194 None:intergenic
TGTGGCTATGCTGATACTTT+TGG 0.352770 8_1:-65446702 Msa1207690:CDS
GAGATTATTGACAAAGAAAC+AGG 0.356462 8_1:-65447631 Msa1207690:CDS
GTAAATCATGATCAGGTTCC+AGG 0.362368 8_1:-65446749 Msa1207690:CDS
TATTGTAGGCACAGCAGTTC+GGG 0.366455 8_1:-65445220 Msa1207690:CDS
TACAATTAGGTTGCCAAAGA+AGG 0.375860 8_1:+65444207 None:intergenic
ATGGTTTCTATAACTTATTT+GGG 0.378426 8_1:-65444056 Msa1207690:three_prime_UTR
AACAGGGAGTAGACATGTTT+GGG 0.387600 8_1:-65447684 None:intergenic
AAACAGGGAGTAGACATGTT+TGG 0.395153 8_1:-65447685 None:intergenic
TACTTGATGCGTGGACGATA+TGG 0.403057 8_1:+65444011 None:intergenic
AAACATGTTATGCAAATCAT+AGG 0.412099 8_1:+65447597 None:intergenic
GCTTTCCTGGACTCTTCAAC+TGG 0.418805 8_1:-65444979 Msa1207690:CDS
TTATGCTGTTCTTACTGATC+AGG 0.435985 8_1:-65446663 Msa1207690:intron
TGTTTCTTTGTCAATAATCT+CGG 0.440352 8_1:+65447633 None:intergenic
TAGTAAAGTAAATCATGATC+AGG 0.463951 8_1:-65446756 Msa1207690:CDS
GAGACTGGCCTTCGTGAACA+TGG 0.464259 8_1:-65444345 Msa1207690:CDS
AACAGCAGATTGCAAGGTTC+TGG 0.465296 8_1:-65444274 Msa1207690:CDS
AGCTCAATATATACAGGAGA+GGG 0.481521 8_1:+65444943 None:intergenic
GGCTGTTGCACTGTTAGAAA+TGG 0.482756 8_1:-65444250 Msa1207690:CDS
GATGACAAGGGTGATATTGT+AGG 0.485313 8_1:-65445234 Msa1207690:CDS
GACATGTTTGGGAAGCGCAT+TGG 0.492141 8_1:-65447673 Msa1207690:CDS
TGCTTCCAGTTGAAGAGTCC+AGG 0.494978 8_1:+65444974 None:intergenic
TGGTACCATACAAGAACCTT+TGG 0.499032 8_1:-65444302 Msa1207690:CDS
ATATTGTAGGCACAGCAGTT+CGG 0.501769 8_1:-65445221 Msa1207690:CDS
AATAAGTTATAGAAACCATA+AGG 0.508019 8_1:+65444060 None:intergenic
CCTCTTGCAAATACAATACC+TGG 0.509588 8_1:+65446731 None:intergenic
ATTGGATAGAGACTTTGCTC+TGG 0.517325 8_1:-65444130 Msa1207690:three_prime_UTR
GTGCGCCAAAGGTTCTTGTA+TGG 0.536766 8_1:+65444297 None:intergenic
TTAGAAATGGCCAAGAAAGA+AGG 0.541378 8_1:-65444237 Msa1207690:CDS
GGAATTGCCTGCTGGAATGT+TGG 0.549721 8_1:-65445259 Msa1207690:CDS
GAAGGCCAGTCTCTTTACCT+TGG 0.550388 8_1:+65444355 None:intergenic
CCAGGTATTGTATTTGCAAG+AGG 0.555102 8_1:-65446731 Msa1207690:CDS
TGACAAAGAAACAGGGAACA+AGG 0.558788 8_1:-65447623 Msa1207690:CDS
TGGCAGGTTGAAGAAGAGAC+AGG 0.561748 8_1:-65445039 Msa1207690:intron
TCCAAAATAATTCTTCCCAC+AGG 0.563140 8_1:+65445279 None:intergenic
AGACTGGCCTTCGTGAACAT+GGG 0.570468 8_1:-65444344 Msa1207690:CDS
AGTATCAGCATAGCCACAGC+TGG 0.570896 8_1:+65446707 None:intergenic
TCATCGTCCAACATTCCAGC+AGG 0.573349 8_1:+65445252 None:intergenic
GCGCACAACAGCAGATTGCA+AGG 0.575266 8_1:-65444280 Msa1207690:CDS
CAAGCTAAATGTAGAAGACA+TGG 0.576281 8_1:-65445013 Msa1207690:CDS
CATCTCCAAGGTAAAGAGAC+TGG 0.580100 8_1:-65444360 Msa1207690:CDS
AGCAGATTGCAAGGTTCTGG+TGG 0.586787 8_1:-65444271 Msa1207690:CDS
AATCTGCTGTTGTGCGCCAA+AGG 0.597228 8_1:+65444286 None:intergenic
TTATAAGGCAAGAGTTCCTG+TGG 0.602408 8_1:-65445295 Msa1207690:intron
TGGAATGTTGGACGATGACA+AGG 0.606260 8_1:-65445247 Msa1207690:CDS
GACTGGCCTTCGTGAACATG+GGG 0.615008 8_1:-65444343 Msa1207690:CDS
GAGATCATCACACATCTCCA+AGG 0.618343 8_1:-65444372 Msa1207690:CDS
AAGCTCAATATATACAGGAG+AGG 0.630817 8_1:+65444942 None:intergenic
TGTAGGCACAGCAGTTCGGG+AGG 0.655418 8_1:-65445217 Msa1207690:intron
TATAAGGCAAGAGTTCCTGT+GGG 0.664649 8_1:-65445294 Msa1207690:intron
GCTCAATATATACAGGAGAG+GGG 0.669054 8_1:+65444944 None:intergenic
ATTTGCAAGAGGACCAGCTG+TGG 0.669747 8_1:-65446720 Msa1207690:CDS
TCAGCTCCCCATGTTCACGA+AGG 0.700716 8_1:+65444337 None:intergenic
AAGAGTCCAGGAAAGCAGTG+AGG 0.702074 8_1:+65444986 None:intergenic
GGAGCTGATTAAGGTGCATG+TGG 0.724413 8_1:-65444322 Msa1207690:CDS
AGATTATTGACAAAGAAACA+GGG 0.740365 8_1:-65447630 Msa1207690:CDS
GGAATGTTGGACGATGACAA+GGG 0.808727 8_1:-65445246 Msa1207690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAGTTATTTAAATAA+AGG - chr8_1:65444350-65444369 Msa1207690:CDS 10.0%
!! ATATATATATATAACAAACT+TGG + chr8_1:65445283-65445302 None:intergenic 10.0%
!! TTATAAAGAAAATATTGTTA+TGG + chr8_1:65446287-65446306 None:intergenic 10.0%
!! TTAAATTTCAATAAATTCAT+GGG + chr8_1:65447046-65447065 None:intergenic 10.0%
!!! ATAACTGTTTTTTTTTAGAT+TGG + chr8_1:65444342-65444361 None:intergenic 15.0%
!! TATTGTATGTATATTCATTT+GGG + chr8_1:65445694-65445713 None:intergenic 15.0%
!!! GCGTTTTTTTTTTTTTTTTA+AGG - chr8_1:65445817-65445836 Msa1207690:intron 15.0%
!! ATAAGGTAAATAAATATGTT+TGG + chr8_1:65446551-65446570 None:intergenic 15.0%
!! CTTAAATTTCAATAAATTCA+TGG + chr8_1:65447047-65447066 None:intergenic 15.0%
!!! ATTTAAATAAAGGTGTTGAT+TGG - chr8_1:65444360-65444379 Msa1207690:CDS 20.0%
!!! TATGAATCAAATTTTTCTTG+AGG + chr8_1:65444503-65444522 None:intergenic 20.0%
!!! TGTATTTGATCTATATGTTT+TGG + chr8_1:65445260-65445279 None:intergenic 20.0%
!! AAATGATCTCTATAATGAAT+TGG - chr8_1:65445431-65445450 Msa1207690:intron 20.0%
!! GTATTGTATGTATATTCATT+TGG + chr8_1:65445695-65445714 None:intergenic 20.0%
!!! TTTAAGGTATAAATTACACT+AGG - chr8_1:65445833-65445852 Msa1207690:intron 20.0%
!! GAATCTATAATATTGTTAAC+AGG - chr8_1:65445996-65446015 Msa1207690:intron 20.0%
!! CTGATATACAATATATCTAA+AGG - chr8_1:65446218-65446237 Msa1207690:intron 20.0%
!! AAAAACAAACCAATTATATC+TGG - chr8_1:65446307-65446326 Msa1207690:intron 20.0%
!! AATGAAATTCCAGATATAAT+TGG + chr8_1:65446319-65446338 None:intergenic 20.0%
!!! TTATGCTGGATATTTTTATA+AGG - chr8_1:65446351-65446370 Msa1207690:intron 20.0%
!!! TGAATGTTGTTATTTCAATA+AGG + chr8_1:65446568-65446587 None:intergenic 20.0%
!!! TTCTTATTCTCTTTCTTTTT+CGG - chr8_1:65447203-65447222 Msa1207690:intron 20.0%
!! AATAAGTTATAGAAACCATA+AGG + chr8_1:65447604-65447623 None:intergenic 20.0%
!! TATGGTTTCTATAACTTATT+TGG - chr8_1:65447604-65447623 Msa1207690:CDS 20.0%
!! ATGGTTTCTATAACTTATTT+GGG - chr8_1:65447605-65447624 Msa1207690:CDS 20.0%
! TGTTTCTTTGTCAATAATCT+CGG + chr8_1:65444031-65444050 None:intergenic 25.0%
! AGATTATTGACAAAGAAACA+GGG - chr8_1:65444031-65444050 Msa1207690:three_prime_UTR 25.0%
! AAACATGTTATGCAAATCAT+AGG + chr8_1:65444067-65444086 None:intergenic 25.0%
!!! TTTTCATTATTAGCCTATTG+AGG - chr8_1:65444084-65444103 Msa1207690:three_prime_UTR 25.0%
! AGTCATTGTTCAAATAATGT+TGG + chr8_1:65444180-65444199 None:intergenic 25.0%
! CATTATTTGAACAATGACTA+TGG - chr8_1:65444181-65444200 Msa1207690:three_prime_UTR 25.0%
! TTTGAATAAAAGTTTCCCAA+AGG - chr8_1:65444216-65444235 Msa1207690:CDS 25.0%
! AATAACCAAATAACTAAGCA+GGG + chr8_1:65444453-65444472 None:intergenic 25.0%
! CATATTTATCTTACCTTTCA+AGG - chr8_1:65444519-65444538 Msa1207690:intron 25.0%
! AAGTCGATGCATAAATATTT+AGG - chr8_1:65444554-65444573 Msa1207690:intron 25.0%
!! ATTTTAAATGTCAAACGAAG+AGG - chr8_1:65444631-65444650 Msa1207690:intron 25.0%
!! TTTTAAATGTCAAACGAAGA+GGG - chr8_1:65444632-65444651 Msa1207690:intron 25.0%
! AAAAGAAAGAAATCAGCATT+AGG + chr8_1:65444883-65444902 None:intergenic 25.0%
! TAGTAAAGTAAATCATGATC+AGG - chr8_1:65444905-65444924 Msa1207690:intron 25.0%
! CTAATATAGAGACATGATAA+CGG + chr8_1:65445611-65445630 None:intergenic 25.0%
!!! CATTTTGTTTATTGCTTTTC+CGG - chr8_1:65445656-65445675 Msa1207690:intron 25.0%
! AATATACATACAATACTCAG+AGG - chr8_1:65445699-65445718 Msa1207690:intron 25.0%
! AAAAAAAAAACGCCATGAAA+AGG + chr8_1:65445810-65445829 None:intergenic 25.0%
!!! GATAAGCACCATTTTTTTAT+TGG + chr8_1:65445859-65445878 None:intergenic 25.0%
! TGCTTATCACACTAAAATAA+AGG - chr8_1:65445871-65445890 Msa1207690:intron 25.0%
! ATTCTGATGCAAAATTTCTT+TGG + chr8_1:65445980-65445999 None:intergenic 25.0%
! TCAACATAATATCTAATGAG+AGG + chr8_1:65446150-65446169 None:intergenic 25.0%
! AAAATATCCAGCATAAGAAT+AGG + chr8_1:65446347-65446366 None:intergenic 25.0%
! TATTTCATTTGCATCACTAA+TGG - chr8_1:65446510-65446529 Msa1207690:intron 25.0%
! GTTTAGTATCATGATATTGT+TGG - chr8_1:65446906-65446925 Msa1207690:intron 25.0%
! TATACTTTAGCTGTCAAAAT+TGG - chr8_1:65447168-65447187 Msa1207690:intron 25.0%
!!! TTTCTTTTTCGGTGTTATTA+GGG - chr8_1:65447214-65447233 Msa1207690:intron 25.0%
! AAAAACAGAAGAGAGATTAT+TGG - chr8_1:65447513-65447532 Msa1207690:intron 25.0%
GAGATTATTGACAAAGAAAC+AGG - chr8_1:65444030-65444049 Msa1207690:three_prime_UTR 30.0%
AGACATGAAAATTCCTCAAT+AGG + chr8_1:65444100-65444119 None:intergenic 30.0%
TTCAAATAATGTTGGAGATC+CGG + chr8_1:65444172-65444191 None:intergenic 30.0%
!! AGGTGAAAATTTTAGTAGCA+GGG + chr8_1:65444290-65444309 None:intergenic 30.0%
!! TGTTAGTGGTTAACTTGTTA+GGG + chr8_1:65444315-65444334 None:intergenic 30.0%
!! ATGTTAGTGGTTAACTTGTT+AGG + chr8_1:65444316-65444335 None:intergenic 30.0%
TTTAGATTGGCAAATGTTAG+TGG + chr8_1:65444329-65444348 None:intergenic 30.0%
!! TAAATAAAGGTGTTGATTGG+TGG - chr8_1:65444363-65444382 Msa1207690:CDS 30.0%
!! TGTTAGTGGTTAACTTGTTA+GGG + chr8_1:65444315-65444334 None:intergenic 30.0%
!! ATGTTAGTGGTTAACTTGTT+AGG + chr8_1:65444316-65444335 None:intergenic 30.0%
TATAACCCTGCTTAGTTATT+TGG - chr8_1:65444445-65444464 Msa1207690:intron 30.0%
CAATAACCAAATAACTAAGC+AGG + chr8_1:65444454-65444473 None:intergenic 30.0%
TTCCTGATTGTACTAAACAT+GGG + chr8_1:65444583-65444602 None:intergenic 30.0%
ATTCCTGATTGTACTAAACA+TGG + chr8_1:65444584-65444603 None:intergenic 30.0%
CTAGACAGAAAAATATGTGT+GGG + chr8_1:65444708-65444727 None:intergenic 30.0%
TCTAGACAGAAAAATATGTG+TGG + chr8_1:65444709-65444728 None:intergenic 30.0%
AATTTGCAAACATCTGTCAT+AGG - chr8_1:65444768-65444787 Msa1207690:intron 30.0%
TCATCTAAAAACATCATCAC+TGG + chr8_1:65445412-65445431 None:intergenic 30.0%
! TTTGAGATGATCAAGTTGTA+GGG + chr8_1:65445513-65445532 None:intergenic 30.0%
! ATTTGAGATGATCAAGTTGT+AGG + chr8_1:65445514-65445533 None:intergenic 30.0%
CGTTATCATGTCTCTATATT+AGG - chr8_1:65445609-65445628 Msa1207690:intron 30.0%
! TTAGGATTTTGTTCTTGACT+TGG - chr8_1:65445627-65445646 Msa1207690:intron 30.0%
ACACTAGGCCAATAAAAAAA+TGG - chr8_1:65445848-65445867 Msa1207690:intron 30.0%
AAATAAAGGAGACATAAGAG+AGG - chr8_1:65445885-65445904 Msa1207690:intron 30.0%
AATAAAGGAGACATAAGAGA+GGG - chr8_1:65445886-65445905 Msa1207690:intron 30.0%
!!! GTGTTTATTTTGTAGTACAC+TGG - chr8_1:65445931-65445950 Msa1207690:intron 30.0%
ATGCAAAATTTCTTTGGATC+AGG + chr8_1:65445974-65445993 None:intergenic 30.0%
ATCAAGCGATAAAATTTCAC+CGG - chr8_1:65446085-65446104 Msa1207690:intron 30.0%
GCAAAAAGCTCAATATATAC+AGG + chr8_1:65446727-65446746 None:intergenic 30.0%
CAAAAACAAAGAATGCAATG+AGG + chr8_1:65446757-65446776 None:intergenic 30.0%
GATTTATATGCAATTCTGCA+TGG + chr8_1:65447015-65447034 None:intergenic 30.0%
!!! CTTTCTTTTTCGGTGTTATT+AGG - chr8_1:65447213-65447232 Msa1207690:intron 30.0%
! TTATTATGTCTAGCTCCTTA+TGG - chr8_1:65447586-65447605 Msa1207690:intron 30.0%
ATAAAAGTTTCCCAAAGGAG+TGG - chr8_1:65444221-65444240 Msa1207690:CDS 35.0%
!! GAGGTGAAAATTTTAGTAGC+AGG + chr8_1:65444291-65444310 None:intergenic 35.0%
CAGGGTTATACTAATGTTAG+TGG + chr8_1:65444435-65444454 None:intergenic 35.0%
CTGTGCTACAATATATAGAG+TGG - chr8_1:65444474-65444493 Msa1207690:intron 35.0%
!! TTATGCATCGACTTATATCC+AGG + chr8_1:65444548-65444567 None:intergenic 35.0%
TTCCCATGTTTAGTACAATC+AGG - chr8_1:65444578-65444597 Msa1207690:intron 35.0%
TTAGTACAATCAGGAATGTC+TGG - chr8_1:65444587-65444606 Msa1207690:intron 35.0%
TGTGATTTCCATATGCTGAA+AGG - chr8_1:65444672-65444691 Msa1207690:intron 35.0%
GTGATTTCCATATGCTGAAA+GGG - chr8_1:65444673-65444692 Msa1207690:intron 35.0%
! TTTTCTGTCTAGAAGTCATG+AGG - chr8_1:65444716-65444735 Msa1207690:intron 35.0%
TTTCTGTCTAGAAGTCATGA+GGG - chr8_1:65444717-65444736 Msa1207690:intron 35.0%
!!! CTGATACTTTTGGAATCAGA+GGG - chr8_1:65444969-65444988 Msa1207690:CDS 35.0%
TTATGCTGTTCTTACTGATC+AGG - chr8_1:65444998-65445017 Msa1207690:CDS 35.0%
CTTACTGATCAGGTATATGT+TGG - chr8_1:65445008-65445027 Msa1207690:CDS 35.0%
!!! CTATATGTTTTGGTCTGACA+GGG + chr8_1:65445250-65445269 None:intergenic 35.0%
!!! TCTATATGTTTTGGTCTGAC+AGG + chr8_1:65445251-65445270 None:intergenic 35.0%
AGACACATATACTAGACATC+TGG - chr8_1:65445361-65445380 Msa1207690:intron 35.0%
TAGTGATTTAAGTGAGGACT+AGG + chr8_1:65445474-65445493 None:intergenic 35.0%
GATGTCTAGTGATTTAAGTG+AGG + chr8_1:65445480-65445499 None:intergenic 35.0%
CACTTAAATCACTAGACATC+AGG - chr8_1:65445480-65445499 Msa1207690:intron 35.0%
! GTAGGAGCTTTGATTTAAGA+AGG + chr8_1:65445554-65445573 None:intergenic 35.0%
ATACATACAATACTCAGAGG+TGG - chr8_1:65445702-65445721 Msa1207690:intron 35.0%
TACATACAATACTCAGAGGT+GGG - chr8_1:65445703-65445722 Msa1207690:intron 35.0%
! TCATAGATGAGACCTTTTCA+TGG - chr8_1:65445795-65445814 Msa1207690:intron 35.0%
CAAAATTTCTTTGGATCAGG+CGG + chr8_1:65445971-65445990 None:intergenic 35.0%
TAAAGGTTGAGGTAAGAAAG+AGG - chr8_1:65446062-65446081 Msa1207690:intron 35.0%
TTTCATGCCTATTCTTATGC+TGG - chr8_1:65446337-65446356 Msa1207690:intron 35.0%
! TCCTGTGGGAAGAATTATTT+TGG - chr8_1:65446381-65446400 Msa1207690:intron 35.0%
TCCAAAATAATTCTTCCCAC+AGG + chr8_1:65446385-65446404 None:intergenic 35.0%
!!! ATTATTTTGGAATTGCCTGC+TGG - chr8_1:65446394-65446413 Msa1207690:intron 35.0%
!! ATGTTTGGCTTGCAACTAAA+AGG + chr8_1:65446536-65446555 None:intergenic 35.0%
ACTTTGTGAAGTTGTGATTC+TGG - chr8_1:65446602-65446621 Msa1207690:intron 35.0%
CAAGCTAAATGTAGAAGACA+TGG - chr8_1:65446648-65446667 Msa1207690:intron 35.0%
AGCTCAATATATACAGGAGA+GGG + chr8_1:65446721-65446740 None:intergenic 35.0%
AAGCTCAATATATACAGGAG+AGG + chr8_1:65446722-65446741 None:intergenic 35.0%
!! GTTAAACTTCTGGTCGTTTT+AGG - chr8_1:65446965-65446984 Msa1207690:intron 35.0%
TTAGAAATGGCCAAGAAAGA+AGG - chr8_1:65447424-65447443 Msa1207690:intron 35.0%
AGGCAATAATCCTTCTTTCT+TGG + chr8_1:65447437-65447456 None:intergenic 35.0%
AGAAGGATTATTGCCTTCTT+TGG - chr8_1:65447441-65447460 Msa1207690:intron 35.0%
! TACAATTAGGTTGCCAAAGA+AGG + chr8_1:65447457-65447476 None:intergenic 35.0%
TTCTGCGTAGCATTACAATT+AGG + chr8_1:65447470-65447489 None:intergenic 35.0%
TGACAAAGAAACAGGGAACA+AGG - chr8_1:65444038-65444057 Msa1207690:three_prime_UTR 40.0%
ATAATGTTGGAGATCCGGAT+AGG + chr8_1:65444167-65444186 None:intergenic 40.0%
TTAGTAGCAGGGATTGAACT+TGG + chr8_1:65444279-65444298 None:intergenic 40.0%
!! AAGGTGTTGATTGGTGGAAT+TGG - chr8_1:65444369-65444388 Msa1207690:CDS 40.0%
TATATCCAGGATGCCTTGAA+AGG + chr8_1:65444535-65444554 None:intergenic 40.0%
GTCATAGGATCCAAAATCCT+TGG - chr8_1:65444783-65444802 Msa1207690:intron 40.0%
GTAAATCATGATCAGGTTCC+AGG - chr8_1:65444912-65444931 Msa1207690:intron 40.0%
CCTCTTGCAAATACAATACC+TGG + chr8_1:65444933-65444952 None:intergenic 40.0%
! CCAGGTATTGTATTTGCAAG+AGG - chr8_1:65444930-65444949 Msa1207690:intron 40.0%
! TGTGGCTATGCTGATACTTT+TGG - chr8_1:65444959-65444978 Msa1207690:CDS 40.0%
!!! GCTGATACTTTTGGAATCAG+AGG - chr8_1:65444968-65444987 Msa1207690:CDS 40.0%
ATAACGTACGTATGCTGGTA+GGG + chr8_1:65445189-65445208 None:intergenic 40.0%
AATAACGTACGTATGCTGGT+AGG + chr8_1:65445190-65445209 None:intergenic 40.0%
CAGAAATAACGTACGTATGC+TGG + chr8_1:65445194-65445213 None:intergenic 40.0%
ATGCCTAACATAGTTGCTGT+AGG + chr8_1:65445572-65445591 None:intergenic 40.0%
ATTTGGGTAACGTTAACTGC+CGG + chr8_1:65445678-65445697 None:intergenic 40.0%
TGGCACACTCAAATGTTGAT+TGG + chr8_1:65445752-65445771 None:intergenic 40.0%
ACAAGAGTCACAATAAGTCG+TGG + chr8_1:65445772-65445791 None:intergenic 40.0%
ATCAAACACGTTTCCCTTAG+AGG - chr8_1:65446029-65446048 Msa1207690:intron 40.0%
TTATTTCCCCCAACCTCTAA+GGG + chr8_1:65446045-65446064 None:intergenic 40.0%
TTTATTTCCCCCAACCTCTA+AGG + chr8_1:65446046-65446065 None:intergenic 40.0%
TTAGAGGTTGGGGGAAATAA+AGG - chr8_1:65446045-65446064 Msa1207690:intron 40.0%
AAGCGATAAAATTTCACCGG+TGG - chr8_1:65446088-65446107 Msa1207690:intron 40.0%
AGCGATAAAATTTCACCGGT+GGG - chr8_1:65446089-65446108 Msa1207690:intron 40.0%
ATAAAATTTCACCGGTGGGA+TGG - chr8_1:65446093-65446112 Msa1207690:intron 40.0%
CAACTCTGATCCATAAAGCT+CGG + chr8_1:65446127-65446146 None:intergenic 40.0%
TTATAAGGCAAGAGTTCCTG+TGG - chr8_1:65446366-65446385 Msa1207690:intron 40.0%
TATAAGGCAAGAGTTCCTGT+GGG - chr8_1:65446367-65446386 Msa1207690:intron 40.0%
GATGACAAGGGTGATATTGT+AGG - chr8_1:65446427-65446446 Msa1207690:intron 40.0%
ATATTGTAGGCACAGCAGTT+CGG - chr8_1:65446440-65446459 Msa1207690:intron 40.0%
GCTCAATATATACAGGAGAG+GGG + chr8_1:65446720-65446739 None:intergenic 40.0%
TGCTTTGCAATACTTCTGCA+TGG - chr8_1:65446869-65446888 Msa1207690:intron 40.0%
ATTGCACGCAGTTAAACTTC+TGG - chr8_1:65446955-65446974 Msa1207690:intron 40.0%
!!! CTTTTTCGGTGTTATTAGGG+AGG - chr8_1:65447217-65447236 Msa1207690:intron 40.0%
TGGTACCATACAAGAACCTT+TGG - chr8_1:65447359-65447378 Msa1207690:intron 40.0%
ATTGGATAGAGACTTTGCTC+TGG - chr8_1:65447531-65447550 Msa1207690:intron 40.0%
! GCAGTATTTTACTTGATGCG+TGG + chr8_1:65447662-65447681 None:intergenic 40.0%
AACTGTGTCCGCGTACATAT+TGG - chr8_1:65444141-65444160 Msa1207690:three_prime_UTR 45.0%
!! GTGGTTAACTTGTTAGGGAG+AGG + chr8_1:65444310-65444329 None:intergenic 45.0%
!! GTGGTTAACTTGTTAGGGAG+AGG + chr8_1:65444310-65444329 None:intergenic 45.0%
! TCTTACCTTTCAAGGCATCC+TGG - chr8_1:65444527-65444546 Msa1207690:intron 45.0%
!! ACGAAGAGGGTATCATATGC+AGG - chr8_1:65444645-65444664 Msa1207690:intron 45.0%
!! CGAAGAGGGTATCATATGCA+GGG - chr8_1:65444646-65444665 Msa1207690:intron 45.0%
TGTGATGCCCTTTCAGCATA+TGG + chr8_1:65444683-65444702 None:intergenic 45.0%
ATCCAAAATCCTTGGAACCC+AGG - chr8_1:65444791-65444810 Msa1207690:intron 45.0%
! ATCCTGGGTTCCAAGGATTT+TGG + chr8_1:65444796-65444815 None:intergenic 45.0%
ACCCAGGATGTGATAGACAT+TGG - chr8_1:65444807-65444826 Msa1207690:intron 45.0%
CCCAATGTCTATCACATCCT+GGG + chr8_1:65444811-65444830 None:intergenic 45.0%
CCCAGGATGTGATAGACATT+GGG - chr8_1:65444808-65444827 Msa1207690:intron 45.0%
ACCCAATGTCTATCACATCC+TGG + chr8_1:65444812-65444831 None:intergenic 45.0%
GCTCCTACAGCAACTATGTT+AGG - chr8_1:65445566-65445585 Msa1207690:intron 45.0%
AACACGTTTCCCTTAGAGGT+TGG - chr8_1:65446033-65446052 Msa1207690:intron 45.0%
ACACGTTTCCCTTAGAGGTT+GGG - chr8_1:65446034-65446053 Msa1207690:intron 45.0%
GTTGGGGGAAATAAAGGTTG+AGG - chr8_1:65446051-65446070 Msa1207690:intron 45.0%
TGGAATGTTGGACGATGACA+AGG - chr8_1:65446414-65446433 Msa1207690:intron 45.0%
GGAATGTTGGACGATGACAA+GGG - chr8_1:65446415-65446434 Msa1207690:intron 45.0%
TATTGTAGGCACAGCAGTTC+GGG - chr8_1:65446441-65446460 Msa1207690:intron 45.0%
TGTGAAGTTGTGATTCTGGC+AGG - chr8_1:65446606-65446625 Msa1207690:intron 45.0%
GAGATCATCACACATCTCCA+AGG - chr8_1:65447289-65447308 Msa1207690:intron 45.0%
CATCTCCAAGGTAAAGAGAC+TGG - chr8_1:65447301-65447320 Msa1207690:intron 45.0%
TGAACATGGGGAGCTGATTA+AGG - chr8_1:65447330-65447349 Msa1207690:intron 45.0%
AACAGCAGATTGCAAGGTTC+TGG - chr8_1:65447387-65447406 Msa1207690:intron 45.0%
GGCTGTTGCACTGTTAGAAA+TGG - chr8_1:65447411-65447430 Msa1207690:intron 45.0%
TACTTGATGCGTGGACGATA+TGG + chr8_1:65447653-65447672 None:intergenic 45.0%
!! TAAATAAACTAATAAATATA+TGG + chr8_1:65444845-65444864 None:intergenic 5.0%
CGGATAGGCCAATATGTACG+CGG + chr8_1:65444152-65444171 None:intergenic 50.0%
! CGCGTACATATTGGCCTATC+CGG - chr8_1:65444150-65444169 Msa1207690:three_prime_UTR 50.0%
TACCACTTGGCCACTCCTTT+GGG + chr8_1:65444234-65444253 None:intergenic 50.0%
ATACCACTTGGCCACTCCTT+TGG + chr8_1:65444235-65444254 None:intergenic 50.0%
AGTGGCCAAGTGGTATGTGT+CGG - chr8_1:65444239-65444258 Msa1207690:CDS 50.0%
GGATTGAACTTGGAACCTCC+TGG + chr8_1:65444269-65444288 None:intergenic 50.0%
CTATCACATCCTGGGTTCCA+AGG + chr8_1:65444803-65444822 None:intergenic 50.0%
ATTTGCAAGAGGACCAGCTG+TGG - chr8_1:65444941-65444960 Msa1207690:intron 50.0%
AGTATCAGCATAGCCACAGC+TGG + chr8_1:65444957-65444976 None:intergenic 50.0%
TGGCAGACACTACTACTGCT+GGG + chr8_1:65445732-65445751 None:intergenic 50.0%
TTGGCAGACACTACTACTGC+TGG + chr8_1:65445733-65445752 None:intergenic 50.0%
AAGAGAGGGTGACAGTGAGA+TGG - chr8_1:65445900-65445919 Msa1207690:intron 50.0%
CACGTTTCCCTTAGAGGTTG+GGG - chr8_1:65446035-65446054 Msa1207690:intron 50.0%
ACGTTTCCCTTAGAGGTTGG+GGG - chr8_1:65446036-65446055 Msa1207690:intron 50.0%
CTCTGATCCATAAAGCTCGG+TGG + chr8_1:65446124-65446143 None:intergenic 50.0%
GGAATTGCCTGCTGGAATGT+TGG - chr8_1:65446402-65446421 Msa1207690:intron 50.0%
TCATCGTCCAACATTCCAGC+AGG + chr8_1:65446412-65446431 None:intergenic 50.0%
! TGGCAGGTTGAAGAAGAGAC+AGG - chr8_1:65446622-65446641 Msa1207690:intron 50.0%
AAGAGTCCAGGAAAGCAGTG+AGG + chr8_1:65446678-65446697 None:intergenic 50.0%
GCTTTCCTGGACTCTTCAAC+TGG - chr8_1:65446682-65446701 Msa1207690:CDS 50.0%
TGCTTCCAGTTGAAGAGTCC+AGG + chr8_1:65446690-65446709 None:intergenic 50.0%
GAAGGCCAGTCTCTTTACCT+TGG + chr8_1:65447309-65447328 None:intergenic 50.0%
!! AGACTGGCCTTCGTGAACAT+GGG - chr8_1:65447317-65447336 Msa1207690:intron 50.0%
GGAGCTGATTAAGGTGCATG+TGG - chr8_1:65447339-65447358 Msa1207690:intron 50.0%
GTGCGCCAAAGGTTCTTGTA+TGG + chr8_1:65447367-65447386 None:intergenic 50.0%
AATCTGCTGTTGTGCGCCAA+AGG + chr8_1:65447378-65447397 None:intergenic 50.0%
! AGCAGATTGCAAGGTTCTGG+TGG - chr8_1:65447390-65447409 Msa1207690:intron 50.0%
TTCCCAAAGGAGTGGCCAAG+TGG - chr8_1:65444229-65444248 Msa1207690:CDS 55.0%
GTGGCCAAGTGGTATGTGTC+GGG - chr8_1:65444240-65444259 Msa1207690:CDS 55.0%
TGGCCAAGTGGTATGTGTCG+GGG - chr8_1:65444241-65444260 Msa1207690:CDS 55.0%
GGTGAGTCCACCGAGCTTTA+TGG - chr8_1:65446114-65446133 Msa1207690:intron 55.0%
GGTTGACCTCACTGCTTTCC+TGG - chr8_1:65446669-65446688 Msa1207690:CDS 55.0%
!! GAGACTGGCCTTCGTGAACA+TGG - chr8_1:65447316-65447335 Msa1207690:intron 55.0%
!! GACTGGCCTTCGTGAACATG+GGG - chr8_1:65447318-65447337 Msa1207690:intron 55.0%
TCAGCTCCCCATGTTCACGA+AGG + chr8_1:65447327-65447346 None:intergenic 55.0%
GCGCACAACAGCAGATTGCA+AGG - chr8_1:65447381-65447400 Msa1207690:intron 55.0%
GTGCCCCGACACATACCACT+TGG + chr8_1:65444247-65444266 None:intergenic 60.0%
TGTAGGCACAGCAGTTCGGG+AGG - chr8_1:65446444-65446463 Msa1207690:intron 60.0%
! GTGGTATGTGTCGGGGCACC+AGG - chr8_1:65444248-65444267 Msa1207690:CDS 65.0%
! GTATGTGTCGGGGCACCAGG+AGG - chr8_1:65444251-65444270 Msa1207690:CDS 65.0%
! CGGTGGACTCACCATCCCAC+CGG + chr8_1:65446107-65446126 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 65443991 65447692 65443991 ID=Msa1207690;Name=Msa1207690
chr8_1 mRNA 65443991 65447692 65443991 ID=Msa1207690-mRNA-1;Parent=Msa1207690;Name=Msa1207690-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.75|0.6|1|1|1|5|221|210
chr8_1 exon 65443991 65444448 65443991 ID=Msa1207690-mRNA-1:exon:21469;Parent=Msa1207690-mRNA-1
chr8_1 exon 65444957 65445055 65444957 ID=Msa1207690-mRNA-1:exon:21468;Parent=Msa1207690-mRNA-1
chr8_1 exon 65445218 65445310 65445218 ID=Msa1207690-mRNA-1:exon:21467;Parent=Msa1207690-mRNA-1
chr8_1 exon 65446664 65446775 65446664 ID=Msa1207690-mRNA-1:exon:21466;Parent=Msa1207690-mRNA-1
chr8_1 exon 65447601 65447692 65447601 ID=Msa1207690-mRNA-1:exon:21465;Parent=Msa1207690-mRNA-1
chr8_1 CDS 65447601 65447692 65447601 ID=Msa1207690-mRNA-1:cds;Parent=Msa1207690-mRNA-1
chr8_1 CDS 65446664 65446775 65446664 ID=Msa1207690-mRNA-1:cds;Parent=Msa1207690-mRNA-1
chr8_1 CDS 65445218 65445310 65445218 ID=Msa1207690-mRNA-1:cds;Parent=Msa1207690-mRNA-1
chr8_1 CDS 65444957 65445055 65444957 ID=Msa1207690-mRNA-1:cds;Parent=Msa1207690-mRNA-1
chr8_1 CDS 65444212 65444448 65444212 ID=Msa1207690-mRNA-1:cds;Parent=Msa1207690-mRNA-1
chr8_1 three_prime_UTR 65443991 65444211 65443991 ID=Msa1207690-mRNA-1:three_prime_utr;Parent=Msa1207690-mRNA-1
Gene Sequence

>Msa1207690

ATGTTTGGGAAGCGCATTGGATTTCTCAAGTTCAAAGCCGAGATTATTGACAAAGAAACAGGGAACAAGGTTTCCTATGATTTGCATAACATTAAAGTAAATCATGATCAGGTTCCAGGTATTGTATTTGCAAGAGGACCAGCTGTGGCTATGCTGATACTTTTGGAATCAGAGGGTGAGACTTATGCTGTTCTTACTGATCAGGCAAGAGTTCCTGTGGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGACGATGACAAGGGTGATATTGTAGGCACAGCAGTTCGGGAGGTTGAAGAAGAGACAGGCATCAAGCTAAATGTAGAAGACATGGTTGACCTCACTGCTTTCCTGGACTCTTCAACTGGAAGCACAGTTTTCCCCTCTCCTGGAGGATGTGACGAAGAGATCAGTATCTTTCTCTGCAGAAAGCGTGTTGATAAAGAGATCATCACACATCTCCAAGGTAAAGAGACTGGCCTTCGTGAACATGGGGAGCTGATTAAGGTGCATGTGGTACCATACAAGAACCTTTGGCGCACAACAGCAGATTGCAAGGTTCTGGTGGCTGTTGCACTGTTAGAAATGGCCAAGAAAGAAGGATTATTGCCTTCTTTGGCAACCTAA

Protein sequence

>Msa1207690

MFGKRIGFLKFKAEIIDKETGNKVSYDLHNIKVNHDQVPGIVFARGPAVAMLILLESEGETYAVLTDQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFPSPGGCDEEISIFLCRKRVDKEIITHLQGKETGLREHGELIKVHVVPYKNLWRTTADCKVLVAVALLEMAKKEGLLPSLAT*