AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365120 MtrunA17_Chr3g0145361 92.444 225 12 4 4 227 9 229 3.63e-132 371
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365120 AT4G34730.2 70.391 179 39 1 49 227 51 215 9.32e-86 253
Msa1365120 AT4G34730.3 70.391 179 39 1 49 227 51 215 9.32e-86 253
Msa1365120 AT4G34730.1 70.391 179 39 1 49 227 51 215 9.32e-86 253

Find 62 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCACTGCGAACATATT+TGG 0.174334 tig0018197:-218670 None:intergenic
TGAAATCACCGCTGATTTAC+AGG 0.294810 tig0018197:+218310 Msa1365120:CDS
TTAGTATCAAGCTTTCTATT+TGG 0.298356 tig0018197:+219960 Msa1365120:three_prime_UTR
AAATGGTTGCCAAACAAATT+AGG 0.339007 tig0018197:+218174 Msa1365120:CDS
AAATATGTTCGCAGTGAGTT+GGG 0.366464 tig0018197:+218672 Msa1365120:CDS
GGCAAATTGCAAGACGTTAT+CGG 0.368809 tig0018197:-218222 None:intergenic
GGGAAGGAAGTGGCCATGGC+TGG 0.375787 tig0018197:+218633 Msa1365120:CDS
CATATAGACAAAACTAAACT+TGG 0.382867 tig0018197:-219932 None:intergenic
GTTCTTCCTGAAGCTTCCTT+AGG 0.384742 tig0018197:+218245 Msa1365120:CDS
CATGGACCCACTCACGCCTC+TGG 0.394773 tig0018197:-218103 None:intergenic
AAGTTCTCTCCTAATTTGTT+TGG 0.408418 tig0018197:-218183 None:intergenic
GAAAGGAAGAATACTGGAAT+AGG 0.409467 tig0018197:+217954 Msa1365120:five_prime_UTR
AAGAATACTGGAATAGGAAT+AGG 0.411749 tig0018197:+217960 Msa1365120:five_prime_UTR
TCAGCACCTAAGGAAGCTTC+AGG 0.415676 tig0018197:-218251 None:intergenic
ACATAAATGATACCTTCTTC+AGG 0.417511 tig0018197:-219791 None:intergenic
GAATCCAAGGAGAGTCAAAA+TGG 0.420166 tig0018197:+218157 Msa1365120:CDS
CAGATGAAGACGATGCTGAT+TGG 0.423415 tig0018197:+219756 Msa1365120:CDS
GATTTCAACGTCGGTGATAG+TGG 0.425429 tig0018197:-218294 None:intergenic
AAGGGAGAAAGGAAGAATAC+TGG 0.430552 tig0018197:+217948 Msa1365120:five_prime_UTR
AGATGAAGACGATGCTGATT+GGG 0.431019 tig0018197:+219757 Msa1365120:CDS
CAGGCAAATTACTGATGCTT+GGG 0.452885 tig0018197:-219827 None:intergenic
GAGGTAAGAATCAGCACCTA+AGG 0.457882 tig0018197:-218261 None:intergenic
CGGTCACACTCACACCTTGT+TGG 0.460357 tig0018197:+218030 Msa1365120:CDS
TCCTCATTATTCTTGAAGCA+TGG 0.477997 tig0018197:-218121 None:intergenic
CAAATATGTTCGCAGTGAGT+TGG 0.480055 tig0018197:+218671 Msa1365120:CDS
AATAATGAGGATAAAATGTA+TGG 0.481499 tig0018197:+218133 Msa1365120:CDS
TTGCCTGTTTGTTATGAAGA+TGG 0.482135 tig0018197:+219843 Msa1365120:three_prime_UTR
TCTCCATCTTCATAACAAAC+AGG 0.488639 tig0018197:-219846 None:intergenic
ACAGGCAAATTACTGATGCT+TGG 0.493202 tig0018197:-219828 None:intergenic
CTAAACTTGGGATTATCTAA+AGG 0.494857 tig0018197:-219919 None:intergenic
CATAAATGATACCTTCTTCA+GGG 0.510113 tig0018197:-219790 None:intergenic
CGCGACGCGACGCGACAAAA+GGG 0.512472 tig0018197:+217930 Msa1365120:five_prime_UTR
TGAAGAAGGTATCATTTATG+TGG 0.517227 tig0018197:+219793 Msa1365120:CDS
GGAAGGAAGTGGCCATGGCT+GGG 0.525786 tig0018197:+218634 Msa1365120:CDS
CGACGCGACAAAAGGGAGAA+AGG 0.528691 tig0018197:+217937 Msa1365120:five_prime_UTR
TATAGTTGCAGTTGCAGTTG+CGG 0.536941 tig0018197:-218072 None:intergenic
ATGGACCCACTCACGCCTCT+GGG 0.541708 tig0018197:-218102 None:intergenic
TTCAGACCCAGAGGCGTGAG+TGG 0.561624 tig0018197:+218096 Msa1365120:CDS
ATATAGACAAAACTAAACTT+GGG 0.562453 tig0018197:-219931 None:intergenic
AGATGAAAGAGGGAAGGAAG+TGG 0.566160 tig0018197:+218623 Msa1365120:CDS
ATGGAGAGACCATGCAGTGT+TGG 0.575366 tig0018197:+219862 Msa1365120:three_prime_UTR
TAAAATGTATGGCGAATCCA+AGG 0.579676 tig0018197:+218144 Msa1365120:CDS
GAAGATGAAGACCCTGAAGA+AGG 0.579729 tig0018197:+219779 Msa1365120:CDS
AAGAGGGAAGGAAGTGGCCA+TGG 0.582663 tig0018197:+218629 Msa1365120:CDS
TGGGGAGGCGTATGAAGTTG+CGG 0.591668 tig0018197:+218691 Msa1365120:CDS
AATATGTTCGCAGTGAGTTG+GGG 0.594957 tig0018197:+218673 Msa1365120:CDS
TAAGGAAGCTTCAGGAAGAA+CGG 0.601825 tig0018197:-218243 None:intergenic
ATGTTCGCAGTGAGTTGGGG+AGG 0.601873 tig0018197:+218676 Msa1365120:CDS
CGCTGCTGCACTGATACCAT+CGG 0.603061 tig0018197:+218010 Msa1365120:CDS
CGATTGTTACATCGCCAACA+AGG 0.616823 tig0018197:-218044 None:intergenic
AACGTCGGTGATAGTGGTGA+CGG 0.620179 tig0018197:-218288 None:intergenic
AGAGACCATGCAGTGTTGGT+AGG 0.621060 tig0018197:+219866 Msa1365120:three_prime_UTR
ACATACCTACCAACACTGCA+TGG 0.622994 tig0018197:-219871 None:intergenic
TGATAGTGGTGACGGAAGAG+AGG 0.626472 tig0018197:-218280 None:intergenic
TCAGACCCAGAGGCGTGAGT+GGG 0.627258 tig0018197:+218097 Msa1365120:CDS
CGATGGTATCAGTGCAGCAG+CGG 0.640281 tig0018197:-218009 None:intergenic
CAGTTGGATTCATCAGTGAA+CGG 0.643319 tig0018197:+219704 Msa1365120:CDS
ATCAGCGGTGATTTCAACGT+CGG 0.653697 tig0018197:-218303 None:intergenic
TCCATGCTTCAAGAATAATG+AGG 0.684220 tig0018197:+218120 Msa1365120:CDS
AATAAGAACCTGTAAATCAG+CGG 0.693763 tig0018197:-218318 None:intergenic
CAAGGTGTGAGTGTGACCGA+TGG 0.717093 tig0018197:-218026 None:intergenic
CAACTATATTTCAGACCCAG+AGG 0.724001 tig0018197:+218087 Msa1365120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAGAAAAAAATATA+AGG - tig0018197:218976-218995 None:intergenic 10.0%
!! AACATATAGAAAAAAATATA+AGG - tig0018197:218976-218995 None:intergenic 10.0%
!! ATTAAATGAGAAAAATGAAA+AGG - tig0018197:218479-218498 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG + tig0018197:219406-219425 Msa1365120:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG - tig0018197:219543-219562 None:intergenic 15.0%
!! ATTAAATGAGAAAAATGAAA+AGG - tig0018197:218479-218498 None:intergenic 15.0%
!!! CATATTCGTTAATTTTAAAA+AGG + tig0018197:219406-219425 Msa1365120:intron 15.0%
!! TGCTTAAATATATAAAAGAA+TGG - tig0018197:219543-219562 None:intergenic 15.0%
!! AATAATGAGGATAAAATGTA+TGG + tig0018197:218133-218152 Msa1365120:CDS 20.0%
!! GAATTATCACACTATAAATT+CGG - tig0018197:218371-218390 None:intergenic 20.0%
!! GTCATGAAACAAAATAAATA+AGG - tig0018197:218523-218542 None:intergenic 20.0%
!!! ATATTTACCGTTTCTTTTTA+CGG + tig0018197:218780-218799 Msa1365120:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG - tig0018197:219286-219305 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG - tig0018197:219379-219398 None:intergenic 20.0%
!! ATATAGACAAAACTAAACTT+GGG - tig0018197:219934-219953 None:intergenic 20.0%
!!! TTTAGTTTTGTCTATATGAA+TGG + tig0018197:219937-219956 Msa1365120:three_prime_UTR 20.0%
!!! ATACACAGTATAATTCTTTT+TGG - tig0018197:219994-220013 None:intergenic 20.0%
!! AATAATGAGGATAAAATGTA+TGG + tig0018197:218133-218152 Msa1365120:CDS 20.0%
!! GAATTATCACACTATAAATT+CGG - tig0018197:218371-218390 None:intergenic 20.0%
!! GTCATGAAACAAAATAAATA+AGG - tig0018197:218523-218542 None:intergenic 20.0%
!!! ATATTTACCGTTTCTTTTTA+CGG + tig0018197:218780-218799 Msa1365120:intron 20.0%
!! TCATCAGGAAAATAAAAATA+AGG - tig0018197:219286-219305 None:intergenic 20.0%
!! AAGATAAAAAAAGATTTCAG+CGG - tig0018197:219379-219398 None:intergenic 20.0%
!! ATATAGACAAAACTAAACTT+GGG - tig0018197:219934-219953 None:intergenic 20.0%
!!! TTTAGTTTTGTCTATATGAA+TGG + tig0018197:219937-219956 Msa1365120:three_prime_UTR 20.0%
!!! ATACACAGTATAATTCTTTT+TGG - tig0018197:219994-220013 None:intergenic 20.0%
! TTTATAGTGTGATAATTCAG+TGG + tig0018197:218373-218392 Msa1365120:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG + tig0018197:218489-218508 Msa1365120:intron 25.0%
! TCTATCTACCATATATATGT+TGG + tig0018197:219024-219043 Msa1365120:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG + tig0018197:219164-219183 Msa1365120:intron 25.0%
!! TATTCAAACAATGCTTTTGA+GGG + tig0018197:219230-219249 Msa1365120:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG + tig0018197:219549-219568 Msa1365120:intron 25.0%
! CATATAGACAAAACTAAACT+TGG - tig0018197:219935-219954 None:intergenic 25.0%
! TTAGTATCAAGCTTTCTATT+TGG + tig0018197:219960-219979 Msa1365120:three_prime_UTR 25.0%
!! ACATCTTTTCATATACACAT+TGG - tig0018197:220110-220129 None:intergenic 25.0%
! TTTATAGTGTGATAATTCAG+TGG + tig0018197:218373-218392 Msa1365120:intron 25.0%
! CTCATTTAATCTAGTGTATT+TGG + tig0018197:218489-218508 Msa1365120:intron 25.0%
! TCTATCTACCATATATATGT+TGG + tig0018197:219024-219043 Msa1365120:intron 25.0%
! AGTGATACATAAGAATAAGA+TGG + tig0018197:219164-219183 Msa1365120:intron 25.0%
!! TATTCAAACAATGCTTTTGA+GGG + tig0018197:219230-219249 Msa1365120:intron 25.0%
! TATATATTTAAGCAGCTTCT+TGG + tig0018197:219549-219568 Msa1365120:intron 25.0%
! CATATAGACAAAACTAAACT+TGG - tig0018197:219935-219954 None:intergenic 25.0%
! TTAGTATCAAGCTTTCTATT+TGG + tig0018197:219960-219979 Msa1365120:three_prime_UTR 25.0%
!! ACATCTTTTCATATACACAT+TGG - tig0018197:220110-220129 None:intergenic 25.0%
AAGAATACTGGAATAGGAAT+AGG + tig0018197:217960-217979 Msa1365120:five_prime_UTR 30.0%
AAATGGTTGCCAAACAAATT+AGG + tig0018197:218174-218193 Msa1365120:CDS 30.0%
!! AAGTTCTCTCCTAATTTGTT+TGG - tig0018197:218186-218205 None:intergenic 30.0%
AATAAGAACCTGTAAATCAG+CGG - tig0018197:218321-218340 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG - tig0018197:218368-218387 None:intergenic 30.0%
AGAAAAATGAAAAGGCAATG+TGG - tig0018197:218471-218490 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG + tig0018197:218572-218591 Msa1365120:intron 30.0%
AACTTTAGTAGTAGACTAGA+AGG - tig0018197:218890-218909 None:intergenic 30.0%
!! TACTAAAGTTGTTTCTGTGT+TGG + tig0018197:218900-218919 Msa1365120:intron 30.0%
TCTCTTTGAATACGAACTTA+GGG - tig0018197:218938-218957 None:intergenic 30.0%
TTCTCTTTGAATACGAACTT+AGG - tig0018197:218939-218958 None:intergenic 30.0%
AAGAACCATCTCATAATTGT+GGG - tig0018197:219095-219114 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG - tig0018197:219096-219115 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG + tig0018197:219098-219117 Msa1365120:intron 30.0%
! CTATTCAAACAATGCTTTTG+AGG + tig0018197:219229-219248 Msa1365120:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG + tig0018197:219231-219250 Msa1365120:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG + tig0018197:219294-219313 Msa1365120:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG + tig0018197:219295-219314 Msa1365120:intron 30.0%
! GTTGTGAGCTTTTATTGATA+TGG + tig0018197:219596-219615 Msa1365120:intron 30.0%
TATCTAATATTGCAATGACC+TGG - tig0018197:219643-219662 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG - tig0018197:219793-219812 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG - tig0018197:219794-219813 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG + tig0018197:219793-219812 Msa1365120:CDS 30.0%
CTAAACTTGGGATTATCTAA+AGG - tig0018197:219922-219941 None:intergenic 30.0%
AAGAATACTGGAATAGGAAT+AGG + tig0018197:217960-217979 Msa1365120:five_prime_UTR 30.0%
AAATGGTTGCCAAACAAATT+AGG + tig0018197:218174-218193 Msa1365120:CDS 30.0%
!! AAGTTCTCTCCTAATTTGTT+TGG - tig0018197:218186-218205 None:intergenic 30.0%
AATAAGAACCTGTAAATCAG+CGG - tig0018197:218321-218340 None:intergenic 30.0%
TTATCACACTATAAATTCGG+CGG - tig0018197:218368-218387 None:intergenic 30.0%
AGAAAAATGAAAAGGCAATG+TGG - tig0018197:218471-218490 None:intergenic 30.0%
! TAACTCAACACTTTTAGTGT+AGG + tig0018197:218572-218591 Msa1365120:intron 30.0%
AACTTTAGTAGTAGACTAGA+AGG - tig0018197:218890-218909 None:intergenic 30.0%
!! TACTAAAGTTGTTTCTGTGT+TGG + tig0018197:218900-218919 Msa1365120:intron 30.0%
TCTCTTTGAATACGAACTTA+GGG - tig0018197:218938-218957 None:intergenic 30.0%
TTCTCTTTGAATACGAACTT+AGG - tig0018197:218939-218958 None:intergenic 30.0%
AAGAACCATCTCATAATTGT+GGG - tig0018197:219095-219114 None:intergenic 30.0%
TAAGAACCATCTCATAATTG+TGG - tig0018197:219096-219115 None:intergenic 30.0%
ATTATGAGATGGTTCTTACT+AGG + tig0018197:219098-219117 Msa1365120:intron 30.0%
! CTATTCAAACAATGCTTTTG+AGG + tig0018197:219229-219248 Msa1365120:intron 30.0%
! ATTCAAACAATGCTTTTGAG+GGG + tig0018197:219231-219250 Msa1365120:intron 30.0%
!! TTTTCCTGATGATGAAATTG+TGG + tig0018197:219294-219313 Msa1365120:intron 30.0%
! TTTCCTGATGATGAAATTGT+GGG + tig0018197:219295-219314 Msa1365120:intron 30.0%
! GTTGTGAGCTTTTATTGATA+TGG + tig0018197:219596-219615 Msa1365120:intron 30.0%
TATCTAATATTGCAATGACC+TGG - tig0018197:219643-219662 None:intergenic 30.0%
CATAAATGATACCTTCTTCA+GGG - tig0018197:219793-219812 None:intergenic 30.0%
ACATAAATGATACCTTCTTC+AGG - tig0018197:219794-219813 None:intergenic 30.0%
!! TGAAGAAGGTATCATTTATG+TGG + tig0018197:219793-219812 Msa1365120:CDS 30.0%
CTAAACTTGGGATTATCTAA+AGG - tig0018197:219922-219941 None:intergenic 30.0%
GAAAGGAAGAATACTGGAAT+AGG + tig0018197:217954-217973 Msa1365120:five_prime_UTR 35.0%
TCCATGCTTCAAGAATAATG+AGG + tig0018197:218120-218139 Msa1365120:CDS 35.0%
TCCTCATTATTCTTGAAGCA+TGG - tig0018197:218124-218143 None:intergenic 35.0%
TAAAATGTATGGCGAATCCA+AGG + tig0018197:218144-218163 Msa1365120:CDS 35.0%
CTAGCAGTGCATTATATCAA+TGG + tig0018197:218434-218453 Msa1365120:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG + tig0018197:218581-218600 Msa1365120:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG + tig0018197:218600-218619 Msa1365120:CDS 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG + tig0018197:218612-218631 Msa1365120:CDS 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG + tig0018197:218613-218632 Msa1365120:CDS 35.0%
AAATATGTTCGCAGTGAGTT+GGG + tig0018197:218672-218691 Msa1365120:CDS 35.0%
! TTTACCGTTTCTTTTTACGG+TGG + tig0018197:218783-218802 Msa1365120:intron 35.0%
AGAACCACCGTAAAAAGAAA+CGG - tig0018197:218790-218809 None:intergenic 35.0%
TTTAGTAGTAGACTAGAAGG+CGG - tig0018197:218887-218906 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG + tig0018197:218994-219013 Msa1365120:intron 35.0%
TGGCAGTTCCAACATATATA+TGG - tig0018197:219035-219054 None:intergenic 35.0%
AGAACCATCTCATAATTGTG+GGG - tig0018197:219094-219113 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG - tig0018197:219124-219143 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG - tig0018197:219207-219226 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG - tig0018197:219301-219320 None:intergenic 35.0%
AATGACCTGGAAGTTTGAAT+GGG - tig0018197:219630-219649 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG + tig0018197:219679-219698 Msa1365120:CDS 35.0%
!! TTGCCTGTTTGTTATGAAGA+TGG + tig0018197:219843-219862 Msa1365120:three_prime_UTR 35.0%
TCTCCATCTTCATAACAAAC+AGG - tig0018197:219849-219868 None:intergenic 35.0%
GAAAGGAAGAATACTGGAAT+AGG + tig0018197:217954-217973 Msa1365120:five_prime_UTR 35.0%
TCCATGCTTCAAGAATAATG+AGG + tig0018197:218120-218139 Msa1365120:CDS 35.0%
TCCTCATTATTCTTGAAGCA+TGG - tig0018197:218124-218143 None:intergenic 35.0%
TAAAATGTATGGCGAATCCA+AGG + tig0018197:218144-218163 Msa1365120:CDS 35.0%
CTAGCAGTGCATTATATCAA+TGG + tig0018197:218434-218453 Msa1365120:intron 35.0%
! ACTTTTAGTGTAGGTCGTTA+GGG + tig0018197:218581-218600 Msa1365120:intron 35.0%
! AGGGTGTATGTATCTGTTTT+TGG + tig0018197:218600-218619 Msa1365120:CDS 35.0%
!!! TCTGTTTTTGGAGATGAAAG+AGG + tig0018197:218612-218631 Msa1365120:CDS 35.0%
!!! CTGTTTTTGGAGATGAAAGA+GGG + tig0018197:218613-218632 Msa1365120:CDS 35.0%
AAATATGTTCGCAGTGAGTT+GGG + tig0018197:218672-218691 Msa1365120:CDS 35.0%
! TTTACCGTTTCTTTTTACGG+TGG + tig0018197:218783-218802 Msa1365120:intron 35.0%
AGAACCACCGTAAAAAGAAA+CGG - tig0018197:218790-218809 None:intergenic 35.0%
TTTAGTAGTAGACTAGAAGG+CGG - tig0018197:218887-218906 None:intergenic 35.0%
TTAGTTCATCACTACGCATA+GGG + tig0018197:218994-219013 Msa1365120:intron 35.0%
TGGCAGTTCCAACATATATA+TGG - tig0018197:219035-219054 None:intergenic 35.0%
AGAACCATCTCATAATTGTG+GGG - tig0018197:219094-219113 None:intergenic 35.0%
ATTAACCCACATAGCAACAA+GGG - tig0018197:219124-219143 None:intergenic 35.0%
CAAGAAATTGTCCATACAAG+AGG - tig0018197:219207-219226 None:intergenic 35.0%
AAACCCACAATTTCATCATC+AGG - tig0018197:219301-219320 None:intergenic 35.0%
AATGACCTGGAAGTTTGAAT+GGG - tig0018197:219630-219649 None:intergenic 35.0%
GAGTGAAACAAGCAAAAACA+TGG + tig0018197:219679-219698 Msa1365120:CDS 35.0%
!! TTGCCTGTTTGTTATGAAGA+TGG + tig0018197:219843-219862 Msa1365120:three_prime_UTR 35.0%
TCTCCATCTTCATAACAAAC+AGG - tig0018197:219849-219868 None:intergenic 35.0%
AAGGGAGAAAGGAAGAATAC+TGG + tig0018197:217948-217967 Msa1365120:five_prime_UTR 40.0%
TATAGTTGCAGTTGCAGTTG+CGG - tig0018197:218075-218094 None:intergenic 40.0%
CAACTATATTTCAGACCCAG+AGG + tig0018197:218087-218106 Msa1365120:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG + tig0018197:218157-218176 Msa1365120:CDS 40.0%
GGCAAATTGCAAGACGTTAT+CGG - tig0018197:218225-218244 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG - tig0018197:218246-218265 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG + tig0018197:218310-218329 Msa1365120:CDS 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG + tig0018197:218580-218599 Msa1365120:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG + tig0018197:218617-218636 Msa1365120:CDS 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG - tig0018197:218649-218668 None:intergenic 40.0%
CAACTCACTGCGAACATATT+TGG - tig0018197:218673-218692 None:intergenic 40.0%
CAAATATGTTCGCAGTGAGT+TGG + tig0018197:218671-218690 Msa1365120:CDS 40.0%
AATATGTTCGCAGTGAGTTG+GGG + tig0018197:218673-218692 Msa1365120:CDS 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG - tig0018197:218724-218743 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG + tig0018197:218738-218757 Msa1365120:CDS 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG + tig0018197:218745-218764 Msa1365120:CDS 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG + tig0018197:218746-218765 Msa1365120:CDS 40.0%
! GTGTTGTTCTGTTTCCACTT+TGG + tig0018197:218831-218850 Msa1365120:intron 40.0%
ACTAAGAGATGGTCTGGAAA+GGG - tig0018197:218857-218876 None:intergenic 40.0%
AACTAAGAGATGGTCTGGAA+AGG - tig0018197:218858-218877 None:intergenic 40.0%
CAAGAAACTAAGAGATGGTC+TGG - tig0018197:218863-218882 None:intergenic 40.0%
GTTAGTTCATCACTACGCAT+AGG + tig0018197:218993-219012 Msa1365120:intron 40.0%
ACGGAATAAACTGTGACACA+TGG - tig0018197:219055-219074 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG + tig0018197:219065-219084 Msa1365120:intron 40.0%
TCTCATAATTGTGGGGAAAC+CGG - tig0018197:219087-219106 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG + tig0018197:219087-219106 Msa1365120:intron 40.0%
CATTAACCCACATAGCAACA+AGG - tig0018197:219125-219144 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG + tig0018197:219193-219212 Msa1365120:intron 40.0%
CAATGACCTGGAAGTTTGAA+TGG - tig0018197:219631-219650 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG + tig0018197:219688-219707 Msa1365120:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG + tig0018197:219704-219723 Msa1365120:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG + tig0018197:219757-219776 Msa1365120:CDS 40.0%
CAGGCAAATTACTGATGCTT+GGG - tig0018197:219830-219849 None:intergenic 40.0%
ACAGGCAAATTACTGATGCT+TGG - tig0018197:219831-219850 None:intergenic 40.0%
AAGGGAGAAAGGAAGAATAC+TGG + tig0018197:217948-217967 Msa1365120:five_prime_UTR 40.0%
TATAGTTGCAGTTGCAGTTG+CGG - tig0018197:218075-218094 None:intergenic 40.0%
CAACTATATTTCAGACCCAG+AGG + tig0018197:218087-218106 Msa1365120:CDS 40.0%
GAATCCAAGGAGAGTCAAAA+TGG + tig0018197:218157-218176 Msa1365120:CDS 40.0%
GGCAAATTGCAAGACGTTAT+CGG - tig0018197:218225-218244 None:intergenic 40.0%
TAAGGAAGCTTCAGGAAGAA+CGG - tig0018197:218246-218265 None:intergenic 40.0%
!! TGAAATCACCGCTGATTTAC+AGG + tig0018197:218310-218329 Msa1365120:CDS 40.0%
! CACTTTTAGTGTAGGTCGTT+AGG + tig0018197:218580-218599 Msa1365120:intron 40.0%
!! TTTTGGAGATGAAAGAGGGA+AGG + tig0018197:218617-218636 Msa1365120:CDS 40.0%
!!! TTTTGATTTCAACCCAGCCA+TGG - tig0018197:218649-218668 None:intergenic 40.0%
CAACTCACTGCGAACATATT+TGG - tig0018197:218673-218692 None:intergenic 40.0%
CAAATATGTTCGCAGTGAGT+TGG + tig0018197:218671-218690 Msa1365120:CDS 40.0%
AATATGTTCGCAGTGAGTTG+GGG + tig0018197:218673-218692 Msa1365120:CDS 40.0%
! ATCCTCCAAAAAGCGTATCT+CGG - tig0018197:218724-218743 None:intergenic 40.0%
!! GAGGATGAATCTTTTGAGAG+AGG + tig0018197:218738-218757 Msa1365120:CDS 40.0%
!! AATCTTTTGAGAGAGGAAGC+AGG + tig0018197:218745-218764 Msa1365120:CDS 40.0%
!! ATCTTTTGAGAGAGGAAGCA+GGG + tig0018197:218746-218765 Msa1365120:CDS 40.0%
! GTGTTGTTCTGTTTCCACTT+TGG + tig0018197:218831-218850 Msa1365120:intron 40.0%
ACTAAGAGATGGTCTGGAAA+GGG - tig0018197:218857-218876 None:intergenic 40.0%
AACTAAGAGATGGTCTGGAA+AGG - tig0018197:218858-218877 None:intergenic 40.0%
CAAGAAACTAAGAGATGGTC+TGG - tig0018197:218863-218882 None:intergenic 40.0%
GTTAGTTCATCACTACGCAT+AGG + tig0018197:218993-219012 Msa1365120:intron 40.0%
ACGGAATAAACTGTGACACA+TGG - tig0018197:219055-219074 None:intergenic 40.0%
TTTATTCCGTGATTTCCTGC+CGG + tig0018197:219065-219084 Msa1365120:intron 40.0%
TCTCATAATTGTGGGGAAAC+CGG - tig0018197:219087-219106 None:intergenic 40.0%
GTTTCCCCACAATTATGAGA+TGG + tig0018197:219087-219106 Msa1365120:intron 40.0%
CATTAACCCACATAGCAACA+AGG - tig0018197:219125-219144 None:intergenic 40.0%
! GATTTTCACTGCCTCTTGTA+TGG + tig0018197:219193-219212 Msa1365120:intron 40.0%
CAATGACCTGGAAGTTTGAA+TGG - tig0018197:219631-219650 None:intergenic 40.0%
AAGCAAAAACATGGAGCAGT+TGG + tig0018197:219688-219707 Msa1365120:CDS 40.0%
CAGTTGGATTCATCAGTGAA+CGG + tig0018197:219704-219723 Msa1365120:CDS 40.0%
! AGATGAAGACGATGCTGATT+GGG + tig0018197:219757-219776 Msa1365120:CDS 40.0%
CAGGCAAATTACTGATGCTT+GGG - tig0018197:219830-219849 None:intergenic 40.0%
ACAGGCAAATTACTGATGCT+TGG - tig0018197:219831-219850 None:intergenic 40.0%
CGATTGTTACATCGCCAACA+AGG - tig0018197:218047-218066 None:intergenic 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG - tig0018197:218164-218183 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG + tig0018197:218245-218264 Msa1365120:CDS 45.0%
GAGGTAAGAATCAGCACCTA+AGG - tig0018197:218264-218283 None:intergenic 45.0%
GATTTCAACGTCGGTGATAG+TGG - tig0018197:218297-218316 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG - tig0018197:218306-218325 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG - tig0018197:218350-218369 None:intergenic 45.0%
ATGACTGTCATGTAACGCTG+TGG + tig0018197:218538-218557 Msa1365120:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG + tig0018197:218623-218642 Msa1365120:CDS 45.0%
! AACTCCCGAGATACGCTTTT+TGG + tig0018197:218716-218735 Msa1365120:CDS 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG - tig0018197:218723-218742 None:intergenic 45.0%
GCGGTCAAGAAACTAAGAGA+TGG - tig0018197:218868-218887 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG + tig0018197:219236-219255 Msa1365120:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG + tig0018197:219237-219256 Msa1365120:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG + tig0018197:219311-219330 Msa1365120:intron 45.0%
TTCCACCCATTCAAACTTCC+AGG + tig0018197:219622-219641 Msa1365120:intron 45.0%
CAGATGAAGACGATGCTGAT+TGG + tig0018197:219756-219775 Msa1365120:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG + tig0018197:219779-219798 Msa1365120:CDS 45.0%
ACATACCTACCAACACTGCA+TGG - tig0018197:219874-219893 None:intergenic 45.0%
CGATTGTTACATCGCCAACA+AGG - tig0018197:218047-218066 None:intergenic 45.0%
!!! GCAACCATTTTGACTCTCCT+TGG - tig0018197:218164-218183 None:intergenic 45.0%
GTTCTTCCTGAAGCTTCCTT+AGG + tig0018197:218245-218264 Msa1365120:CDS 45.0%
GAGGTAAGAATCAGCACCTA+AGG - tig0018197:218264-218283 None:intergenic 45.0%
GATTTCAACGTCGGTGATAG+TGG - tig0018197:218297-218316 None:intergenic 45.0%
ATCAGCGGTGATTTCAACGT+CGG - tig0018197:218306-218325 None:intergenic 45.0%
GGCGGCGAAAATGATAGAAT+AGG - tig0018197:218350-218369 None:intergenic 45.0%
ATGACTGTCATGTAACGCTG+TGG + tig0018197:218538-218557 Msa1365120:intron 45.0%
AGATGAAAGAGGGAAGGAAG+TGG + tig0018197:218623-218642 Msa1365120:CDS 45.0%
! AACTCCCGAGATACGCTTTT+TGG + tig0018197:218716-218735 Msa1365120:CDS 45.0%
! TCCTCCAAAAAGCGTATCTC+GGG - tig0018197:218723-218742 None:intergenic 45.0%
GCGGTCAAGAAACTAAGAGA+TGG - tig0018197:218868-218887 None:intergenic 45.0%
!! AACAATGCTTTTGAGGGGAG+AGG + tig0018197:219236-219255 Msa1365120:intron 45.0%
!! ACAATGCTTTTGAGGGGAGA+GGG + tig0018197:219237-219256 Msa1365120:intron 45.0%
TTGTGGGTTTCACATCACTG+TGG + tig0018197:219311-219330 Msa1365120:intron 45.0%
TTCCACCCATTCAAACTTCC+AGG + tig0018197:219622-219641 Msa1365120:intron 45.0%
CAGATGAAGACGATGCTGAT+TGG + tig0018197:219756-219775 Msa1365120:CDS 45.0%
GAAGATGAAGACCCTGAAGA+AGG + tig0018197:219779-219798 Msa1365120:CDS 45.0%
ACATACCTACCAACACTGCA+TGG - tig0018197:219874-219893 None:intergenic 45.0%
TCAGCACCTAAGGAAGCTTC+AGG - tig0018197:218254-218273 None:intergenic 50.0%
!! TGATAGTGGTGACGGAAGAG+AGG - tig0018197:218283-218302 None:intergenic 50.0%
!! AACGTCGGTGATAGTGGTGA+CGG - tig0018197:218291-218310 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG + tig0018197:218719-218738 Msa1365120:CDS 50.0%
ATAATTGTGGGGAAACCGGC+AGG - tig0018197:219083-219102 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG + tig0018197:219115-219134 Msa1365120:intron 50.0%
CTAGGCCCTTGTTGCTATGT+GGG + tig0018197:219116-219135 Msa1365120:intron 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG - tig0018197:219517-219536 None:intergenic 50.0%
GACCTGGAAGTTTGAATGGG+TGG - tig0018197:219627-219646 None:intergenic 50.0%
ATGGAGAGACCATGCAGTGT+TGG + tig0018197:219862-219881 Msa1365120:three_prime_UTR 50.0%
!! AGAGACCATGCAGTGTTGGT+AGG + tig0018197:219866-219885 Msa1365120:three_prime_UTR 50.0%
TCAGCACCTAAGGAAGCTTC+AGG - tig0018197:218254-218273 None:intergenic 50.0%
!! TGATAGTGGTGACGGAAGAG+AGG - tig0018197:218283-218302 None:intergenic 50.0%
!! AACGTCGGTGATAGTGGTGA+CGG - tig0018197:218291-218310 None:intergenic 50.0%
!! TCCCGAGATACGCTTTTTGG+AGG + tig0018197:218719-218738 Msa1365120:CDS 50.0%
ATAATTGTGGGGAAACCGGC+AGG - tig0018197:219083-219102 None:intergenic 50.0%
ACTAGGCCCTTGTTGCTATG+TGG + tig0018197:219115-219134 Msa1365120:intron 50.0%
CTAGGCCCTTGTTGCTATGT+GGG + tig0018197:219116-219135 Msa1365120:intron 50.0%
!! GCATAAGTGAGCACTGGCTA+TGG - tig0018197:219517-219536 None:intergenic 50.0%
GACCTGGAAGTTTGAATGGG+TGG - tig0018197:219627-219646 None:intergenic 50.0%
ATGGAGAGACCATGCAGTGT+TGG + tig0018197:219862-219881 Msa1365120:three_prime_UTR 50.0%
!! AGAGACCATGCAGTGTTGGT+AGG + tig0018197:219866-219885 Msa1365120:three_prime_UTR 50.0%
CGACGCGACAAAAGGGAGAA+AGG + tig0018197:217937-217956 Msa1365120:five_prime_UTR 55.0%
CGATGGTATCAGTGCAGCAG+CGG - tig0018197:218012-218031 None:intergenic 55.0%
! CGCTGCTGCACTGATACCAT+CGG + tig0018197:218010-218029 Msa1365120:CDS 55.0%
CAAGGTGTGAGTGTGACCGA+TGG - tig0018197:218029-218048 None:intergenic 55.0%
CGGTCACACTCACACCTTGT+TGG + tig0018197:218030-218049 Msa1365120:CDS 55.0%
CTGTCATGTAACGCTGTGGC+TGG + tig0018197:218542-218561 Msa1365120:intron 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG + tig0018197:218629-218648 Msa1365120:CDS 55.0%
! ATGTTCGCAGTGAGTTGGGG+AGG + tig0018197:218676-218695 Msa1365120:CDS 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG + tig0018197:218691-218710 Msa1365120:CDS 55.0%
TGGTCTGGAAAGGGCCAAAG+TGG - tig0018197:218848-218867 None:intergenic 55.0%
GGGAAACCGGCAGGAAATCA+CGG - tig0018197:219074-219093 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG + tig0018197:219240-219259 Msa1365120:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG + tig0018197:219241-219260 Msa1365120:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG - tig0018197:219523-219542 None:intergenic 55.0%
CGACGCGACAAAAGGGAGAA+AGG + tig0018197:217937-217956 Msa1365120:five_prime_UTR 55.0%
CGATGGTATCAGTGCAGCAG+CGG - tig0018197:218012-218031 None:intergenic 55.0%
! CGCTGCTGCACTGATACCAT+CGG + tig0018197:218010-218029 Msa1365120:CDS 55.0%
CAAGGTGTGAGTGTGACCGA+TGG - tig0018197:218029-218048 None:intergenic 55.0%
CGGTCACACTCACACCTTGT+TGG + tig0018197:218030-218049 Msa1365120:CDS 55.0%
CTGTCATGTAACGCTGTGGC+TGG + tig0018197:218542-218561 Msa1365120:intron 55.0%
AAGAGGGAAGGAAGTGGCCA+TGG + tig0018197:218629-218648 Msa1365120:CDS 55.0%
! ATGTTCGCAGTGAGTTGGGG+AGG + tig0018197:218676-218695 Msa1365120:CDS 55.0%
! TGGGGAGGCGTATGAAGTTG+CGG + tig0018197:218691-218710 Msa1365120:CDS 55.0%
TGGTCTGGAAAGGGCCAAAG+TGG - tig0018197:218848-218867 None:intergenic 55.0%
GGGAAACCGGCAGGAAATCA+CGG - tig0018197:219074-219093 None:intergenic 55.0%
!! ATGCTTTTGAGGGGAGAGGG+TGG + tig0018197:219240-219259 Msa1365120:intron 55.0%
!! TGCTTTTGAGGGGAGAGGGT+GGG + tig0018197:219241-219260 Msa1365120:intron 55.0%
TGGCGTGCATAAGTGAGCAC+TGG - tig0018197:219523-219542 None:intergenic 55.0%
! TTCAGACCCAGAGGCGTGAG+TGG + tig0018197:218096-218115 Msa1365120:CDS 60.0%
! TCAGACCCAGAGGCGTGAGT+GGG + tig0018197:218097-218116 Msa1365120:CDS 60.0%
ATGGACCCACTCACGCCTCT+GGG - tig0018197:218105-218124 None:intergenic 60.0%
GGAAGGAAGTGGCCATGGCT+GGG + tig0018197:218634-218653 Msa1365120:CDS 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG + tig0018197:219249-219268 Msa1365120:intron 60.0%
! TTCAGACCCAGAGGCGTGAG+TGG + tig0018197:218096-218115 Msa1365120:CDS 60.0%
! TCAGACCCAGAGGCGTGAGT+GGG + tig0018197:218097-218116 Msa1365120:CDS 60.0%
ATGGACCCACTCACGCCTCT+GGG - tig0018197:218105-218124 None:intergenic 60.0%
GGAAGGAAGTGGCCATGGCT+GGG + tig0018197:218634-218653 Msa1365120:CDS 60.0%
! AGGGGAGAGGGTGGGTTCTT+TGG + tig0018197:219249-219268 Msa1365120:intron 60.0%
CGCGACGCGACGCGACAAAA+GGG + tig0018197:217930-217949 Msa1365120:five_prime_UTR 65.0%
CATGGACCCACTCACGCCTC+TGG - tig0018197:218106-218125 None:intergenic 65.0%
GGGAAGGAAGTGGCCATGGC+TGG + tig0018197:218633-218652 Msa1365120:CDS 65.0%
CGCGACGCGACGCGACAAAA+GGG + tig0018197:217930-217949 Msa1365120:five_prime_UTR 65.0%
CATGGACCCACTCACGCCTC+TGG - tig0018197:218106-218125 None:intergenic 65.0%
GGGAAGGAAGTGGCCATGGC+TGG + tig0018197:218633-218652 Msa1365120:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0018197 gene 217930 220152 217930 ID=Msa1365120;Name=Msa1365120
tig0018197 mRNA 217930 220152 217930 ID=Msa1365120-mRNA-1;Parent=Msa1365120;Name=Msa1365120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=69|1|1|1|1|1|3|332|227
tig0018197 exon 217930 218331 217930 ID=Msa1365120-mRNA-1:exon:14364;Parent=Msa1365120-mRNA-1
tig0018197 exon 218594 218767 218594 ID=Msa1365120-mRNA-1:exon:14365;Parent=Msa1365120-mRNA-1
tig0018197 exon 219644 220152 219644 ID=Msa1365120-mRNA-1:exon:14366;Parent=Msa1365120-mRNA-1
tig0018197 five_prime_UTR 217930 217998 217930 ID=Msa1365120-mRNA-1:five_prime_utr;Parent=Msa1365120-mRNA-1
tig0018197 CDS 217999 218331 217999 ID=Msa1365120-mRNA-1:cds;Parent=Msa1365120-mRNA-1
tig0018197 CDS 218594 218767 218594 ID=Msa1365120-mRNA-1:cds;Parent=Msa1365120-mRNA-1
tig0018197 CDS 219644 219820 219644 ID=Msa1365120-mRNA-1:cds;Parent=Msa1365120-mRNA-1
tig0018197 three_prime_UTR 219821 220152 219821 ID=Msa1365120-mRNA-1:three_prime_utr;Parent=Msa1365120-mRNA-1
Gene Sequence

>Msa1365120

ATGAGCACAACCGCTGCTGCACTGATACCATCGGTCACACTCACACCTTGTTGGCGATGTAACAATCGCACAACCGCAACTGCAACTGCAACTATATTTCAGACCCAGAGGCGTGAGTGGGTCCATGCTTCAAGAATAATGAGGATAAAATGTATGGCGAATCCAAGGAGAGTCAAAATGGTTGCCAAACAAATTAGGAGAGAACTTTCTGATATGCTCATCACCGATAACGTCTTGCAATTTGCCGTTCTTCCTGAAGCTTCCTTAGGTGCTGATTCTTACCTCTCTTCCGTCACCACTATCACCGACGTTGAAATCACCGCTGATTTACAGGTCGTTAGGGTGTATGTATCTGTTTTTGGAGATGAAAGAGGGAAGGAAGTGGCCATGGCTGGGTTGAAATCAAAAGCCAAATATGTTCGCAGTGAGTTGGGGAGGCGTATGAAGTTGCGGTTAACTCCCGAGATACGCTTTTTGGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTCATTGCAATATTAGATAAAATTAAGAATGAGAAGAGTGAAACAAGCAAAAACATGGAGCAGTTGGATTCATCAGTGAACGGAGATGACACTGAGCAGCTGAATTCATCATCAGATGAAGACGATGCTGATTGGGAAGATGAAGACCCTGAAGAAGGTATCATTTATGTGGAATAG

Protein sequence

>Msa1365120

MSTTAAALIPSVTLTPCWRCNNRTTATATATIFQTQRREWVHASRIMRIKCMANPRRVKMVAKQIRRELSDMLITDNVLQFAVLPEASLGADSYLSSVTTITDVEITADLQVVRVYVSVFGDERGKEVAMAGLKSKAKYVRSELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEKSETSKNMEQLDSSVNGDDTEQLNSSSDEDDADWEDEDPEEGIIYVE*