AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358330 MtrunA17_Chr3g0116361 89.098 266 26 3 40 303 20 284 5.85e-173 480
Msa0358330 MtrunA17_Chr3g0132991 28.655 171 111 3 131 290 444 614 8.40e-16 77.8
Msa0358330 MtrunA17_Chr2g0279601 28.289 152 94 4 152 290 467 616 7.17e-14 72.0
Msa0358330 MtrunA17_Chr8g0365341 32.450 151 87 3 156 294 382 529 1.04e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358330 AT3G48480.1 48.536 239 117 3 66 302 57 291 6.37e-78 239
Msa0358330 AT1G60220.1 34.932 146 79 4 156 290 417 557 6.38e-16 78.6
Msa0358330 AT1G09730.2 29.605 152 92 4 152 290 464 613 4.10e-15 76.3
Msa0358330 AT1G09730.1 29.605 152 92 4 152 290 496 645 4.29e-15 76.3
Msa0358330 AT4G33620.1 28.235 170 110 5 131 290 354 521 7.79e-14 72.4
Msa0358330 AT1G10570.2 31.210 157 93 6 148 294 396 547 3.28e-13 70.5
Msa0358330 AT1G10570.1 31.210 157 93 6 148 294 397 548 3.31e-13 70.5
Msa0358330 AT1G10570.3 31.210 157 93 6 148 294 266 417 4.41e-13 69.7

Find 69 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTATGTAATTCAACTTTA+TGG 0.101287 3_1:+43128242 Msa0358330:three_prime_UTR
CTTCTGATCTTCTGCCATTT+TGG 0.150947 3_1:+43127475 Msa0358330:CDS
GCTTATGGTTTAGCCTTTAC+AGG 0.253899 3_1:+43127232 Msa0358330:CDS
TTGCATACATGGACAGCTTA+TGG 0.286157 3_1:+43127217 Msa0358330:CDS
ATCAGTGGACTTAAGGAATA+AGG 0.299254 3_1:+43126114 Msa0358330:intron
CTGATGAGCATCAGCGATAT+TGG 0.304272 3_1:-43126883 None:intergenic
ATTTATCTGACAGGAAAGTA+TGG 0.307770 3_1:+43127163 Msa0358330:intron
TGTTCCTATCAGTGGACTTA+AGG 0.326413 3_1:+43126107 Msa0358330:intron
TTGACGGGAATAAACATTCT+TGG 0.328139 3_1:-43126164 None:intergenic
ACAAGAGAGGTGATAGAAAT+TGG 0.332426 3_1:+43126208 Msa0358330:CDS
AGTATGTAATTCAACTTTAT+GGG 0.334575 3_1:+43128243 Msa0358330:three_prime_UTR
GGGGAATTTGTTCATATAGA+AGG 0.345486 3_1:+43128172 Msa0358330:three_prime_UTR
CAAAGTTCTCGCTAGATCTA+AGG 0.347758 3_1:+43127013 Msa0358330:CDS
ATCACGTTGTATGTTGTTGC+TGG 0.352342 3_1:+43127522 Msa0358330:CDS
CTGGTTTACCTTCGAAGATC+TGG 0.357406 3_1:+43128063 Msa0358330:CDS
GACGAAATTCTATAGTGTTT+CGG 0.357721 3_1:-43125159 None:intergenic
TACAAGACATTTATAAAGTC+GGG 0.360064 3_1:+43127696 Msa0358330:CDS
AAGAGAAAACTTACAAAGTA+AGG 0.378887 3_1:-43127957 None:intergenic
GAAATGAGAAACAAATTGAT+TGG 0.386737 3_1:+43125107 Msa0358330:five_prime_UTR
AATCACCAGTGAAGTATGTT+GGG 0.390373 3_1:-43128125 None:intergenic
TGACGGGAATAAACATTCTT+GGG 0.395036 3_1:-43126163 None:intergenic
GAGAACTTGCAATCCGCTAC+TGG 0.418161 3_1:+43127499 Msa0358330:CDS
AAAGCACACTTTCTTATGTC+TGG 0.419143 3_1:-43127583 None:intergenic
GAGAATTTGGTTCCTTGAAC+TGG 0.423213 3_1:+43128097 Msa0358330:exon
TCTGGTTCAAGCTGCTGCCT+TGG 0.425200 3_1:-43127565 None:intergenic
GCTTTACTTGAGCGGCCAAT+TGG 0.432833 3_1:-43125205 None:intergenic
ATCCACCGCGATTCTCCAAT+TGG 0.438582 3_1:+43125190 Msa0358330:five_prime_UTR
CTTGGGCACAAATCCTGAGC+TGG 0.440090 3_1:-43126146 None:intergenic
CGTGTTTACCATACGACTAT+AGG 0.441885 3_1:-43127330 None:intergenic
ATTGCAAGTTCTCACCAAAA+TGG 0.442196 3_1:-43127489 None:intergenic
GATAGCTGTACTCACTCTTC+AGG 0.446649 3_1:-43128217 None:intergenic
ACTCTTCAGGACAAATCAAC+TGG 0.455255 3_1:-43128204 None:intergenic
CCCTCCATGCTAAAATTCTC+AGG 0.460075 3_1:-43127930 None:intergenic
ATCAATTTCAGCCGCTCTAA+CGG 0.479334 3_1:-43128270 None:intergenic
ATTACCTTGGGCACTAAAAG+TGG 0.479736 3_1:-43127755 None:intergenic
GTGATAGAAATTGGCCCTAA+AGG 0.480923 3_1:+43126217 Msa0358330:CDS
AAAACAATTTAATGAAATAG+AGG 0.483376 3_1:-43127896 None:intergenic
GAAGAGGTCGTTTGCATACA+TGG 0.484637 3_1:+43127206 Msa0358330:CDS
GATATAAGATCCTTGGTCTC+TGG 0.486771 3_1:-43127725 None:intergenic
TGTACGAAGCATTCCTGTAA+AGG 0.487467 3_1:-43127245 None:intergenic
TAATCACCAGTGAAGTATGT+TGG 0.496966 3_1:-43128126 None:intergenic
GTACAAGACATTTATAAAGT+CGG 0.498215 3_1:+43127695 Msa0358330:CDS
TTCAAGCTGCTGCCTTGGAT+CGG 0.507471 3_1:-43127560 None:intergenic
AATTTCTATCACCTCTCTTG+TGG 0.515815 3_1:-43126206 None:intergenic
TGTTGGGGATATCCAGTTCA+AGG 0.533735 3_1:-43128109 None:intergenic
TTACCTTCGAAGATCTGGAT+AGG 0.538067 3_1:+43128068 Msa0358330:CDS
ACAGAGATAAGGTGCTGAGT+TGG 0.540557 3_1:+43127265 Msa0358330:CDS
AATTCGAGATATAAGATCCT+TGG 0.548234 3_1:-43127732 None:intergenic
ATATCCCCAACATACTTCAC+TGG 0.549910 3_1:+43128120 Msa0358330:three_prime_UTR
GAATGCTTCGTACAGAGATA+AGG 0.559251 3_1:+43127254 Msa0358330:CDS
TTTATCTGACAGGAAAGTAT+GGG 0.570923 3_1:+43127164 Msa0358330:intron
AAAATCAAGAGAACATTCAA+AGG 0.578542 3_1:+43126987 Msa0358330:CDS
TGAGAATCGCTTTACTTGAG+CGG 0.591583 3_1:-43125213 None:intergenic
AAACCTATCCAGATCTTCGA+AGG 0.596730 3_1:-43128071 None:intergenic
CAAAATGGCAGAAGATCAGA+AGG 0.598520 3_1:-43127474 None:intergenic
CTCTTGAAATGACCGATCCA+AGG 0.601300 3_1:+43127548 Msa0358330:CDS
AGAGAAAACTTACAAAGTAA+GGG 0.608059 3_1:-43127956 None:intergenic
GAAAATCGAGACCACAAGAG+AGG 0.609773 3_1:+43126195 Msa0358330:CDS
ACAAGACATTTATAAAGTCG+GGG 0.610983 3_1:+43127697 Msa0358330:CDS
TTATGGGAATTCCGTTAGAG+CGG 0.613562 3_1:+43128259 Msa0358330:three_prime_UTR
ACCAAGACTGTAAAAGTGAG+AGG 0.627754 3_1:+43126915 Msa0358330:CDS
GAGAAACAAATTGATTGGAG+TGG 0.629238 3_1:+43125112 Msa0358330:five_prime_UTR
ATCACCAGTGAAGTATGTTG+GGG 0.633381 3_1:-43128124 None:intergenic
GGAGAAATTGACTCAAGACA+TGG 0.634059 3_1:+43126858 Msa0358330:CDS
CAGAAGAGCACTGAACTCAA+CGG 0.657975 3_1:+43125135 Msa0358330:five_prime_UTR
CAAGACATTTATAAAGTCGG+GGG 0.675790 3_1:+43127698 Msa0358330:CDS
AGCGGCCAATTGGAGAATCG+CGG 0.677805 3_1:-43125195 None:intergenic
GGCCAATTGGAGAATCGCGG+TGG 0.690349 3_1:-43125192 None:intergenic
CATACAACGTGATCCAGTAG+CGG 0.720222 3_1:-43127512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTTCATTATTT+GGG + chr3_1:43125429-43125448 Msa0358330:intron 10.0%
!!! AATTTTAAAAAATTAAGGTA+CGG - chr3_1:43125977-43125996 None:intergenic 10.0%
!!! CATCAAATTTTAAAAAATTA+AGG - chr3_1:43125982-43126001 None:intergenic 10.0%
!! AAAAATAGTTATAAGATTAT+AGG + chr3_1:43126589-43126608 Msa0358330:intron 10.0%
!! TTGAATAATTAATCAAAAAA+GGG - chr3_1:43127363-43127382 None:intergenic 10.0%
!! ATTGAATAATTAATCAAAAA+AGG - chr3_1:43127364-43127383 None:intergenic 10.0%
!!! TAATTAATAATTTTCAAGAA+TGG - chr3_1:43127986-43128005 None:intergenic 10.0%
!!! ATTATTTTATTTTACATACA+TGG + chr3_1:43128145-43128164 Msa0358330:three_prime_UTR 10.0%
!!! TCTATTTTTATTTTTTAACT+CGG + chr3_1:43128336-43128355 Msa0358330:three_prime_UTR 10.0%
!! GAATATGAAGTAAAATTTAA+AGG - chr3_1:43125255-43125274 None:intergenic 15.0%
!! CCAAATAATGAAAAAAAAAA+AGG - chr3_1:43125431-43125450 None:intergenic 15.0%
!!! CCTTTTTTTTTTTCATTATT+TGG + chr3_1:43125428-43125447 Msa0358330:intron 15.0%
!!! AAACTATGTTTTTTTTTTTG+TGG + chr3_1:43125564-43125583 Msa0358330:intron 15.0%
!!! TTGTAAGTTTTTTTTTTGTT+TGG + chr3_1:43125711-43125730 Msa0358330:intron 15.0%
!!! AACAACAATTTTTGAATTTA+CGG - chr3_1:43125746-43125765 None:intergenic 15.0%
!!! ATTTTAAAAAATTAAGGTAC+GGG - chr3_1:43125976-43125995 None:intergenic 15.0%
!! AAAAAAAAAACTAACCTTTA+GGG - chr3_1:43126234-43126253 None:intergenic 15.0%
!! AAAAAAAAAAACTAACCTTT+AGG - chr3_1:43126235-43126254 None:intergenic 15.0%
!!! TAAAAAAAACATTTTCACAA+AGG + chr3_1:43127293-43127312 Msa0358330:CDS 15.0%
!! TTGACATTTAACAAATAAAA+TGG - chr3_1:43127405-43127424 None:intergenic 15.0%
!!! TTTGAAATCATAATTTTGTA+GGG + chr3_1:43127441-43127460 Msa0358330:intron 15.0%
!! AAAACAATTTAATGAAATAG+AGG - chr3_1:43127899-43127918 None:intergenic 15.0%
!!! CTATTTCATTAAATTGTTTT+TGG + chr3_1:43127899-43127918 Msa0358330:CDS 15.0%
!!! CTTCAATAATTACTTTTTAC+AGG - chr3_1:43125066-43125085 None:intergenic 20.0%
!! TATTGAAGAAAAAGTGAAAT+AGG + chr3_1:43125078-43125097 Msa0358330:five_prime_UTR 20.0%
!!! TTGCTTTTTGTGTAATTTAT+AGG + chr3_1:43125379-43125398 Msa0358330:intron 20.0%
!!! TGCTTTTTGTGTAATTTATA+GGG + chr3_1:43125380-43125399 Msa0358330:intron 20.0%
!!! TTTTTTTTTCATTATTTGGG+TGG + chr3_1:43125432-43125451 Msa0358330:intron 20.0%
!!! TTTTTTTTCATTATTTGGGT+GGG + chr3_1:43125433-43125452 Msa0358330:intron 20.0%
!!! ATAACAATGTTTCTAAATGT+GGG - chr3_1:43125625-43125644 None:intergenic 20.0%
!!! TATAACAATGTTTCTAAATG+TGG - chr3_1:43125626-43125645 None:intergenic 20.0%
!! CATTTAGAAACATTGTTATA+AGG + chr3_1:43125626-43125645 Msa0358330:intron 20.0%
!! AAACATTGTTATAAGGTTAT+AGG + chr3_1:43125633-43125652 Msa0358330:intron 20.0%
!!! ACAACAATTTTTGAATTTAC+GGG - chr3_1:43125745-43125764 None:intergenic 20.0%
!!! TAATGTTTTTACAACAACAA+TGG + chr3_1:43125902-43125921 Msa0358330:intron 20.0%
!! TTGTGTAAAGATTCTATATA+AGG - chr3_1:43126380-43126399 None:intergenic 20.0%
!! ATAAATTGCAGATATAAATG+CGG - chr3_1:43126450-43126469 None:intergenic 20.0%
!! TCCCAATTAAAATAAGTTTA+CGG + chr3_1:43126553-43126572 Msa0358330:intron 20.0%
!!! ACCGTAAACTTATTTTAATT+GGG - chr3_1:43126557-43126576 None:intergenic 20.0%
!!! AACCGTAAACTTATTTTAAT+TGG - chr3_1:43126558-43126577 None:intergenic 20.0%
!!! TTATAACTATTTTTTGCAAG+TGG - chr3_1:43126583-43126602 None:intergenic 20.0%
!!! TTTTTACATTTAGTATTCCT+CGG + chr3_1:43126952-43126971 Msa0358330:CDS 20.0%
!!! ATAAATGTTATTTATCTGAC+AGG + chr3_1:43127154-43127173 Msa0358330:intron 20.0%
!! CTACAAAATTATGATTTCAA+AGG - chr3_1:43127442-43127461 None:intergenic 20.0%
!!! CTTTGAAATCATAATTTTGT+AGG + chr3_1:43127440-43127459 Msa0358330:intron 20.0%
!!! TTGAAATCATAATTTTGTAG+GGG + chr3_1:43127442-43127461 Msa0358330:intron 20.0%
!!! TTTATTTTACATACATGGTA+AGG + chr3_1:43128150-43128169 Msa0358330:three_prime_UTR 20.0%
!!! TTATTTTACATACATGGTAA+GGG + chr3_1:43128151-43128170 Msa0358330:three_prime_UTR 20.0%
!! AAGTATGTAATTCAACTTTA+TGG + chr3_1:43128242-43128261 Msa0358330:three_prime_UTR 20.0%
!! AGTATGTAATTCAACTTTAT+GGG + chr3_1:43128243-43128262 Msa0358330:three_prime_UTR 20.0%
! GAAATGAGAAACAAATTGAT+TGG + chr3_1:43125107-43125126 Msa0358330:five_prime_UTR 25.0%
! GAAGTAAAATTTAAAGGTGA+AGG - chr3_1:43125249-43125268 None:intergenic 25.0%
!!! TTTTTTTCATTATTTGGGTG+GGG + chr3_1:43125434-43125453 Msa0358330:intron 25.0%
!!! TTTCTTTCACATTGATTTTG+AGG + chr3_1:43125467-43125486 Msa0358330:intron 25.0%
! AAAAACATAGTTTCTGAATG+TGG - chr3_1:43125557-43125576 None:intergenic 25.0%
! TATAAGGTTATAGGTGTTTA+CGG + chr3_1:43125642-43125661 Msa0358330:intron 25.0%
!! CAACAATTTTTGAATTTACG+GGG - chr3_1:43125744-43125763 None:intergenic 25.0%
! CAAAAAACACTATAATTGCA+GGG + chr3_1:43125860-43125879 Msa0358330:intron 25.0%
! AAATTTGATGTATTTCGTAC+TGG + chr3_1:43125992-43126011 Msa0358330:intron 25.0%
! AATTTGATGTATTTCGTACT+GGG + chr3_1:43125993-43126012 Msa0358330:intron 25.0%
!! TATTTTCACACAAACAACAA+TGG - chr3_1:43126314-43126333 None:intergenic 25.0%
! TAAATTGCAGATATAAATGC+GGG - chr3_1:43126449-43126468 None:intergenic 25.0%
!!! TTTGTGTTTGCTATTAACAT+AGG + chr3_1:43126525-43126544 Msa0358330:intron 25.0%
!!! TTGTGTTTGCTATTAACATA+GGG + chr3_1:43126526-43126545 Msa0358330:intron 25.0%
! TTTGAGAAGTTCAATAAATC+TGG + chr3_1:43126753-43126772 Msa0358330:intron 25.0%
! ATCTGGATATTGATATCTAT+TGG + chr3_1:43126770-43126789 Msa0358330:intron 25.0%
! TCTGGATATTGATATCTATT+GGG + chr3_1:43126771-43126790 Msa0358330:intron 25.0%
! AAAATCAAGAGAACATTCAA+AGG + chr3_1:43126987-43127006 Msa0358330:CDS 25.0%
!! TCAATGATTTTTGATGGAAA+AGG + chr3_1:43127098-43127117 Msa0358330:intron 25.0%
!!! AAATGGCTCTTGTTATTAAA+GGG - chr3_1:43127388-43127407 None:intergenic 25.0%
!!! AAAATGGCTCTTGTTATTAA+AGG - chr3_1:43127389-43127408 None:intergenic 25.0%
!! ATTTGTTAAATGTCAATCCA+CGG + chr3_1:43127409-43127428 Msa0358330:intron 25.0%
!! TGAAATCATAATTTTGTAGG+GGG + chr3_1:43127443-43127462 Msa0358330:intron 25.0%
! GTACAAGACATTTATAAAGT+CGG + chr3_1:43127695-43127714 Msa0358330:CDS 25.0%
! TACAAGACATTTATAAAGTC+GGG + chr3_1:43127696-43127715 Msa0358330:CDS 25.0%
! TGGACATGAAAATTGTAAAA+GGG - chr3_1:43127787-43127806 None:intergenic 25.0%
! TTGGACATGAAAATTGTAAA+AGG - chr3_1:43127788-43127807 None:intergenic 25.0%
!!! ATTGGTTTTCTTTTAACCAT+TGG - chr3_1:43127824-43127843 None:intergenic 25.0%
! AGAGAAAACTTACAAAGTAA+GGG - chr3_1:43127959-43127978 None:intergenic 25.0%
! AAGAGAAAACTTACAAAGTA+AGG - chr3_1:43127960-43127979 None:intergenic 25.0%
!!! GATTTAATTTTGTTTGCCAT+TGG + chr3_1:43128019-43128038 Msa0358330:intron 25.0%
!! TATTTTACATACATGGTAAG+GGG + chr3_1:43128152-43128171 Msa0358330:three_prime_UTR 25.0%
GACGAAATTCTATAGTGTTT+CGG - chr3_1:43125162-43125181 None:intergenic 30.0%
!!! TTTTTTCATTATTTGGGTGG+GGG + chr3_1:43125435-43125454 Msa0358330:intron 30.0%
!!! ATTTTGAGGTACTACTGTTA+GGG + chr3_1:43125481-43125500 Msa0358330:intron 30.0%
TACAAATGCTATAATTGCAG+AGG - chr3_1:43125696-43125715 None:intergenic 30.0%
ATCTAAACAGAAAATCTTGC+AGG + chr3_1:43125828-43125847 Msa0358330:intron 30.0%
TCTAAACAGAAAATCTTGCA+GGG + chr3_1:43125829-43125848 Msa0358330:intron 30.0%
!!! CCTGCAATTATAGTGTTTTT+TGG - chr3_1:43125862-43125881 None:intergenic 30.0%
CCAAAAAACACTATAATTGC+AGG + chr3_1:43125859-43125878 Msa0358330:intron 30.0%
AACAATGGTAGTAATTCACT+TGG + chr3_1:43125917-43125936 Msa0358330:intron 30.0%
ACTTATGAGCAATGATTCAT+AGG - chr3_1:43126031-43126050 None:intergenic 30.0%
! ATTGAGAAGCTATTTCAAAC+TGG + chr3_1:43126055-43126074 Msa0358330:intron 30.0%
! GATTTTCTTCTTTCTTTGAC+GGG - chr3_1:43126182-43126201 None:intergenic 30.0%
! CGATTTTCTTCTTTCTTTGA+CGG - chr3_1:43126183-43126202 None:intergenic 30.0%
GCCTTCGTTTATTCAATTTA+CGG + chr3_1:43126282-43126301 Msa0358330:intron 30.0%
CCTTCGTTTATTCAATTTAC+GGG + chr3_1:43126283-43126302 Msa0358330:intron 30.0%
CTATATAAGGCACAAAAAGT+AGG - chr3_1:43126367-43126386 None:intergenic 30.0%
AAATTGCAGATATAAATGCG+GGG - chr3_1:43126448-43126467 None:intergenic 30.0%
ATTGCGTCTATAAACATCAT+AGG + chr3_1:43126483-43126502 Msa0358330:intron 30.0%
ACATAATCAACTTCTCTGAT+TGG - chr3_1:43126799-43126818 None:intergenic 30.0%
! CACAGTTCAATGATTTTTGA+TGG + chr3_1:43127092-43127111 Msa0358330:intron 30.0%
ATTTATCTGACAGGAAAGTA+TGG + chr3_1:43127163-43127182 Msa0358330:intron 30.0%
! TTTATCTGACAGGAAAGTAT+GGG + chr3_1:43127164-43127183 Msa0358330:intron 30.0%
! TTTTTGTTCCTATAGTCGTA+TGG + chr3_1:43127322-43127341 Msa0358330:CDS 30.0%
AAATTGCAAATACTCTGACA+GGG - chr3_1:43127647-43127666 None:intergenic 30.0%
TAAATTGCAAATACTCTGAC+AGG - chr3_1:43127648-43127667 None:intergenic 30.0%
CTGAAAATGAAGATAAAAGC+TGG - chr3_1:43127671-43127690 None:intergenic 30.0%
ACAAGACATTTATAAAGTCG+GGG + chr3_1:43127697-43127716 Msa0358330:CDS 30.0%
AATTCGAGATATAAGATCCT+TGG - chr3_1:43127735-43127754 None:intergenic 30.0%
GGACATGAAAATTGTAAAAG+GGG - chr3_1:43127786-43127805 None:intergenic 30.0%
! CATTGGTGATTTGATTACAT+TGG - chr3_1:43127807-43127826 None:intergenic 30.0%
CAATGTAATCAAATCACCAA+TGG + chr3_1:43127805-43127824 Msa0358330:intron 30.0%
AGAAAACCAATCTATATTGC+AGG + chr3_1:43127833-43127852 Msa0358330:intron 30.0%
!! AATTTTGTTTGCCATTGGTA+TGG + chr3_1:43128024-43128043 Msa0358330:intron 30.0%
! ATTTTACATACATGGTAAGG+GGG + chr3_1:43128153-43128172 Msa0358330:three_prime_UTR 30.0%
GAGAAACAAATTGATTGGAG+TGG + chr3_1:43125112-43125131 Msa0358330:five_prime_UTR 35.0%
TTGCGTAAACATGAGATTGA+AGG - chr3_1:43125351-43125370 None:intergenic 35.0%
!!! GATTTTGAGGTACTACTGTT+AGG + chr3_1:43125480-43125499 Msa0358330:intron 35.0%
! CATAGTTTTTGCGATTTAGG+TGG + chr3_1:43125504-43125523 Msa0358330:intron 35.0%
TAGTTTCTGAATGTGGAAGA+TGG - chr3_1:43125550-43125569 None:intergenic 35.0%
GGTGTTTACGGAAAGTTAAA+AGG + chr3_1:43125654-43125673 Msa0358330:intron 35.0%
CTAAACAGAAAATCTTGCAG+GGG + chr3_1:43125830-43125849 Msa0358330:intron 35.0%
AATGATTCATAGGTACGTGT+AGG - chr3_1:43126021-43126040 None:intergenic 35.0%
TATTCCTTAAGTCCACTGAT+AGG - chr3_1:43126114-43126133 None:intergenic 35.0%
! ATCAGTGGACTTAAGGAATA+AGG + chr3_1:43126114-43126133 Msa0358330:intron 35.0%
TGACGGGAATAAACATTCTT+GGG - chr3_1:43126166-43126185 None:intergenic 35.0%
TTGACGGGAATAAACATTCT+TGG - chr3_1:43126167-43126186 None:intergenic 35.0%
AATTTCTATCACCTCTCTTG+TGG - chr3_1:43126209-43126228 None:intergenic 35.0%
ACAAGAGAGGTGATAGAAAT+TGG + chr3_1:43126208-43126227 Msa0358330:CDS 35.0%
CCCGTAAATTGAATAAACGA+AGG - chr3_1:43126286-43126305 None:intergenic 35.0%
AACTTCTCAAAAAACACTCG+TGG - chr3_1:43126744-43126763 None:intergenic 35.0%
! GTTCTCTTGATTTTTGTTCG+TGG - chr3_1:43126981-43127000 None:intergenic 35.0%
!! GTTTTTCAGAAGATAGGAAG+AGG + chr3_1:43127190-43127209 Msa0358330:CDS 35.0%
ATTTCAAAGGATAAACTCCG+TGG - chr3_1:43127429-43127448 None:intergenic 35.0%
ATTGCAAGTTCTCACCAAAA+TGG - chr3_1:43127492-43127511 None:intergenic 35.0%
AAAGCACACTTTCTTATGTC+TGG - chr3_1:43127586-43127605 None:intergenic 35.0%
CAAGACATTTATAAAGTCGG+GGG + chr3_1:43127698-43127717 Msa0358330:CDS 35.0%
! AAAAAGACGACACTGATTGT+GGG + chr3_1:43127865-43127884 Msa0358330:CDS 35.0%
!! GGATAGGTTTTGTGAGAATT+TGG + chr3_1:43128084-43128103 Msa0358330:CDS 35.0%
AATCACCAGTGAAGTATGTT+GGG - chr3_1:43128128-43128147 None:intergenic 35.0%
TAATCACCAGTGAAGTATGT+TGG - chr3_1:43128129-43128148 None:intergenic 35.0%
! GGGGAATTTGTTCATATAGA+AGG + chr3_1:43128172-43128191 Msa0358330:three_prime_UTR 35.0%
TGAGAATCGCTTTACTTGAG+CGG - chr3_1:43125216-43125235 None:intergenic 40.0%
CATCATCACAGAAACAGCAA+TGG - chr3_1:43125277-43125296 None:intergenic 40.0%
! GGGCATAGTTTTTGCGATTT+AGG + chr3_1:43125501-43125520 Msa0358330:intron 40.0%
GTCTCTATAAGCTGATGTCA+GGG - chr3_1:43125774-43125793 None:intergenic 40.0%
AGTCTCTATAAGCTGATGTC+AGG - chr3_1:43125775-43125794 None:intergenic 40.0%
! TGTTCCTATCAGTGGACTTA+AGG + chr3_1:43126107-43126126 Msa0358330:intron 40.0%
AAGGAAAGAAAAACCAGCTC+AGG + chr3_1:43126133-43126152 Msa0358330:CDS 40.0%
GTGATAGAAATTGGCCCTAA+AGG + chr3_1:43126217-43126236 Msa0358330:CDS 40.0%
! GCAAGAGTGTATCATGTATG+AGG - chr3_1:43126264-43126283 None:intergenic 40.0%
!! ATCAGTCGATTTTGCGAATC+AGG + chr3_1:43126833-43126852 Msa0358330:intron 40.0%
! GGAGAAATTGACTCAAGACA+TGG + chr3_1:43126858-43126877 Msa0358330:CDS 40.0%
ACCAAGACTGTAAAAGTGAG+AGG + chr3_1:43126915-43126934 Msa0358330:CDS 40.0%
!! TCCTCTCACTTTTACAGTCT+TGG - chr3_1:43126919-43126938 None:intergenic 40.0%
CAAAGTTCTCGCTAGATCTA+AGG + chr3_1:43127013-43127032 Msa0358330:CDS 40.0%
!! GGGAGAGTTTTTCAGAAGAT+AGG + chr3_1:43127184-43127203 Msa0358330:CDS 40.0%
TTGCATACATGGACAGCTTA+TGG + chr3_1:43127217-43127236 Msa0358330:CDS 40.0%
! GCTTATGGTTTAGCCTTTAC+AGG + chr3_1:43127232-43127251 Msa0358330:CDS 40.0%
! TGTACGAAGCATTCCTGTAA+AGG - chr3_1:43127248-43127267 None:intergenic 40.0%
GAATGCTTCGTACAGAGATA+AGG + chr3_1:43127254-43127273 Msa0358330:CDS 40.0%
CGTGTTTACCATACGACTAT+AGG - chr3_1:43127333-43127352 None:intergenic 40.0%
CAAAATGGCAGAAGATCAGA+AGG - chr3_1:43127477-43127496 None:intergenic 40.0%
!! CTTCTGATCTTCTGCCATTT+TGG + chr3_1:43127475-43127494 Msa0358330:CDS 40.0%
ATCACGTTGTATGTTGTTGC+TGG + chr3_1:43127522-43127541 Msa0358330:CDS 40.0%
GATATAAGATCCTTGGTCTC+TGG - chr3_1:43127728-43127747 None:intergenic 40.0%
!! AATTCCACTTTTAGTGCCCA+AGG + chr3_1:43127751-43127770 Msa0358330:CDS 40.0%
ATTACCTTGGGCACTAAAAG+TGG - chr3_1:43127758-43127777 None:intergenic 40.0%
AAAGGGGTCGTTATTACCTT+GGG - chr3_1:43127770-43127789 None:intergenic 40.0%
AAAAGGGGTCGTTATTACCT+TGG - chr3_1:43127771-43127790 None:intergenic 40.0%
! TCAGTGTCGTCTTTTTGTTG+TGG - chr3_1:43127861-43127880 None:intergenic 40.0%
! CAAAAAGACGACACTGATTG+TGG + chr3_1:43127864-43127883 Msa0358330:CDS 40.0%
!! ACCTGAGAATTTTAGCATGG+AGG + chr3_1:43127929-43127948 Msa0358330:CDS 40.0%
!! CCTGAGAATTTTAGCATGGA+GGG + chr3_1:43127930-43127949 Msa0358330:CDS 40.0%
!! CTGAGAATTTTAGCATGGAG+GGG + chr3_1:43127931-43127950 Msa0358330:CDS 40.0%
TTTCATCTGCACCATACCAA+TGG - chr3_1:43128038-43128057 None:intergenic 40.0%
TGGTGCAGATGAAAAAAGAC+TGG + chr3_1:43128044-43128063 Msa0358330:intron 40.0%
TTACCTTCGAAGATCTGGAT+AGG + chr3_1:43128068-43128087 Msa0358330:CDS 40.0%
AAACCTATCCAGATCTTCGA+AGG - chr3_1:43128074-43128093 None:intergenic 40.0%
! GAGAATTTGGTTCCTTGAAC+TGG + chr3_1:43128097-43128116 Msa0358330:exon 40.0%
ATATCCCCAACATACTTCAC+TGG + chr3_1:43128120-43128139 Msa0358330:three_prime_UTR 40.0%
ATCACCAGTGAAGTATGTTG+GGG - chr3_1:43128127-43128146 None:intergenic 40.0%
ACTCTTCAGGACAAATCAAC+TGG - chr3_1:43128207-43128226 None:intergenic 40.0%
TTATGGGAATTCCGTTAGAG+CGG + chr3_1:43128259-43128278 Msa0358330:three_prime_UTR 40.0%
ATCAATTTCAGCCGCTCTAA+CGG - chr3_1:43128273-43128292 None:intergenic 40.0%
!! CAGAAGAGCACTGAACTCAA+CGG + chr3_1:43125135-43125154 Msa0358330:five_prime_UTR 45.0%
TGTGGTATCGTTCCTACCAA+CGG + chr3_1:43125582-43125601 Msa0358330:intron 45.0%
CCACTGATAGGAACAATGAC+AGG - chr3_1:43126102-43126121 None:intergenic 45.0%
CCTGTCATTGTTCCTATCAG+TGG + chr3_1:43126099-43126118 Msa0358330:intron 45.0%
GAAAATCGAGACCACAAGAG+AGG + chr3_1:43126195-43126214 Msa0358330:CDS 45.0%
!! GTCGATTTTGCGAATCAGGA+AGG + chr3_1:43126837-43126856 Msa0358330:intron 45.0%
CTGATGAGCATCAGCGATAT+TGG - chr3_1:43126886-43126905 None:intergenic 45.0%
GAAGAGGTCGTTTGCATACA+TGG + chr3_1:43127206-43127225 Msa0358330:CDS 45.0%
!! ACAGAGATAAGGTGCTGAGT+TGG + chr3_1:43127265-43127284 Msa0358330:CDS 45.0%
!! CATAATTTTGTAGGGGGCAC+TGG + chr3_1:43127449-43127468 Msa0358330:intron 45.0%
CATACAACGTGATCCAGTAG+CGG - chr3_1:43127515-43127534 None:intergenic 45.0%
CTCTTGAAATGACCGATCCA+AGG + chr3_1:43127548-43127567 Msa0358330:CDS 45.0%
ACATTTATAAAGTCGGGGGC+AGG + chr3_1:43127702-43127721 Msa0358330:CDS 45.0%
GTGGCACCTGCAATATAGAT+TGG - chr3_1:43127842-43127861 None:intergenic 45.0%
!! CGCACCTGAGAATTTTAGCA+TGG + chr3_1:43127926-43127945 Msa0358330:CDS 45.0%
CCCTCCATGCTAAAATTCTC+AGG - chr3_1:43127933-43127952 None:intergenic 45.0%
CTGGTTTACCTTCGAAGATC+TGG + chr3_1:43128063-43128082 Msa0358330:CDS 45.0%
TGTTGGGGATATCCAGTTCA+AGG - chr3_1:43128112-43128131 None:intergenic 45.0%
GATAGCTGTACTCACTCTTC+AGG - chr3_1:43128220-43128239 None:intergenic 45.0%
ATCCACCGCGATTCTCCAAT+TGG + chr3_1:43125190-43125209 Msa0358330:five_prime_UTR 50.0%
GCTTTACTTGAGCGGCCAAT+TGG - chr3_1:43125208-43125227 None:intergenic 50.0%
! ATTTTTGTTCGTGGTCGCCG+AGG - chr3_1:43126972-43126991 None:intergenic 50.0%
GAGAACTTGCAATCCGCTAC+TGG + chr3_1:43127499-43127518 Msa0358330:CDS 50.0%
TTCAAGCTGCTGCCTTGGAT+CGG - chr3_1:43127563-43127582 None:intergenic 50.0%
AGCGGCCAATTGGAGAATCG+CGG - chr3_1:43125198-43125217 None:intergenic 55.0%
GTGAGCTTAGCTCCGTTGGT+AGG - chr3_1:43125597-43125616 None:intergenic 55.0%
CCTTGTGAGCTTAGCTCCGT+TGG - chr3_1:43125601-43125620 None:intergenic 55.0%
CCAACGGAGCTAAGCTCACA+AGG + chr3_1:43125598-43125617 Msa0358330:intron 55.0%
CTTGGGCACAAATCCTGAGC+TGG - chr3_1:43126149-43126168 None:intergenic 55.0%
! TCTGGTTCAAGCTGCTGCCT+TGG - chr3_1:43127568-43127587 None:intergenic 55.0%
GGCCAATTGGAGAATCGCGG+TGG - chr3_1:43125195-43125214 None:intergenic 60.0%
CGGGGGCAGGCCAGAGACCA+AGG + chr3_1:43127715-43127734 Msa0358330:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 43125062 43128465 43125062 ID=Msa0358330;Name=Msa0358330
chr3_1 mRNA 43125062 43128465 43125062 ID=Msa0358330-mRNA-1;Parent=Msa0358330;Name=Msa0358330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=178|1|1|1|0.85|0.87|8|351|304
chr3_1 exon 43125062 43125240 43125062 ID=Msa0358330-mRNA-1:exon:7572;Parent=Msa0358330-mRNA-1
chr3_1 exon 43126119 43126238 43126119 ID=Msa0358330-mRNA-1:exon:7573;Parent=Msa0358330-mRNA-1
chr3_1 exon 43126838 43127072 43126838 ID=Msa0358330-mRNA-1:exon:7574;Parent=Msa0358330-mRNA-1
chr3_1 exon 43127176 43127343 43127176 ID=Msa0358330-mRNA-1:exon:7575;Parent=Msa0358330-mRNA-1
chr3_1 exon 43127462 43127596 43127462 ID=Msa0358330-mRNA-1:exon:7576;Parent=Msa0358330-mRNA-1
chr3_1 exon 43127691 43127772 43127691 ID=Msa0358330-mRNA-1:exon:7577;Parent=Msa0358330-mRNA-1
chr3_1 exon 43127855 43127965 43127855 ID=Msa0358330-mRNA-1:exon:7578;Parent=Msa0358330-mRNA-1
chr3_1 exon 43128052 43128465 43128052 ID=Msa0358330-mRNA-1:exon:7579;Parent=Msa0358330-mRNA-1
chr3_1 five_prime_UTR 43125062 43125239 43125062 ID=Msa0358330-mRNA-1:five_prime_utr;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43125240 43125240 43125240 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43126119 43126238 43126119 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43126838 43127072 43126838 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43127176 43127343 43127176 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43127462 43127596 43127462 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43127691 43127772 43127691 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43127855 43127965 43127855 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 CDS 43128052 43128114 43128052 ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1
chr3_1 three_prime_UTR 43128115 43128465 43128115 ID=Msa0358330-mRNA-1:three_prime_utr;Parent=Msa0358330-mRNA-1
Gene Sequence

>Msa0358330

ATGGACTTAAGGAATAAGGAAAGAAAAACCAGCTCAGGATTTGTGCCCAAGAATGTTTATTCCCGTCAAAGAAAGAAGAAAATCGAGACCACAAGAGAGGTGATAGAAATTGGCCCTAAAGTCGATTTTGCGAATCAGGAAGGAGAAATTGACTCAAGACATGGAACCAATATCGCTGATGCTCATCAGAAAAGCAAAACCAAGACTGTAAAAGTGAGAGGAAGTGATAGTTCGATTTTTACATTTAGTATTCCTCGGCGACCACGAACAAAAATCAAGAGAACATTCAAAGGCAACAAAGTTCTCGCTAGATCTAAGGAAAAGCTAAACAGTCGAGTCTTTGATAATTTCTTAGCGAAAGTATGGGAGAGTTTTTCAGAAGATAGGAAGAGGTCGTTTGCATACATGGACAGCTTATGGTTTAGCCTTTACAGGAATGCTTCGTACAGAGATAAGGTGCTGAGTTGGATTGATAAAAAAAACATTTTCACAAAGGCATATGTTTTTGTTCCTATAGTCGTATGGGGGCACTGGAACCTTCTGATCTTCTGCCATTTTGGTGAGAACTTGCAATCCGCTACTGGATCACGTTGTATGTTGTTGCTGGATTCTCTTGAAATGACCGATCCAAGGCAGCAGCTTGAACCAGACATAAGAAAATTTGTACAAGACATTTATAAAGTCGGGGGCAGGCCAGAGACCAAGGATCTTATATCTCGAATTCCACTTTTAGTGCCCAAGGTGCCACAACAAAAAGACGACACTGATTGTGGGAACTTTGTCCTCTATTTCATTAAATTGTTTTTGGAACGCGCACCTGAGAATTTTAGCATGGAGGGGTACCCTTACTTTATGAAAAAAGACTGGTTTACCTTCGAAGATCTGGATAGGTTTTGTGAGAATTTGGTTCCTTGA

Protein sequence

>Msa0358330

MDLRNKERKTSSGFVPKNVYSRQRKKKIETTREVIEIGPKVDFANQEGEIDSRHGTNIADAHQKSKTKTVKVRGSDSSIFTFSIPRRPRTKIKRTFKGNKVLARSKEKLNSRVFDNFLAKVWESFSEDRKRSFAYMDSLWFSLYRNASYRDKVLSWIDKKNIFTKAYVFVPIVVWGHWNLLIFCHFGENLQSATGSRCMLLLDSLEMTDPRQQLEPDIRKFVQDIYKVGGRPETKDLISRIPLLVPKVPQQKDDTDCGNFVLYFIKLFLERAPENFSMEGYPYFMKKDWFTFEDLDRFCENLVP*