Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358330 | XP_024634086.1 | 88.525 | 305 | 32 | 3 | 1 | 303 | 1 | 304 | 0.0 | 543 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358330 | sp|Q2PS26|ULP1D_ARATH | 34.932 | 146 | 79 | 4 | 156 | 290 | 417 | 557 | 6.28e-15 | 78.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358330 | A0A072V0T5 | 89.098 | 266 | 26 | 3 | 40 | 303 | 20 | 284 | 3.04e-169 | 480 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0358330 | Msa0425010 | 0.803511 | 3.366835e-49 | -8.615850e-47 |
Msa0358330 | Msa0510370 | 0.973837 | 4.131188e-137 | -8.615850e-47 |
Msa0358330 | Msa0703490 | 0.801678 | 8.038162e-49 | -8.615850e-47 |
Msa0358330 | Msa1040120 | 0.802391 | 5.736022e-49 | -8.615850e-47 |
Msa0358330 | Msa1128160 | 0.821804 | 3.322113e-53 | -8.615850e-47 |
Msa0358330 | Msa1165360 | 0.818296 | 2.111226e-52 | -8.615850e-47 |
Msa0358330 | Msa1242220 | 0.806166 | 9.388132e-50 | -8.615850e-47 |
Msa0358330 | Msa1242230 | 0.824666 | 7.131991e-54 | -8.615850e-47 |
Msa0358330 | Msa1242240 | 0.817011 | 4.113051e-52 | -8.615850e-47 |
Msa0358330 | Msa1271280 | 0.837082 | 6.410637e-57 | -8.615850e-47 |
Msa0358330 | Msa1271300 | 0.805654 | 1.202639e-49 | -8.615850e-47 |
Msa0358330 | Msa1283840 | 0.827383 | 1.612545e-54 | -8.615850e-47 |
Msa0358330 | Msa1284260 | 0.808639 | 2.805893e-50 | -8.615850e-47 |
Msa0358330 | Msa1322860 | 0.814731 | 1.327250e-51 | -8.615850e-47 |
Msa0358330 | Msa1322890 | 0.800212 | 1.602067e-48 | -8.615850e-47 |
Msa0358330 | Msa1324780 | 0.800082 | 1.702580e-48 | -8.615850e-47 |
Msa0358330 | Msa1327050 | 0.807827 | 4.178340e-50 | -8.615850e-47 |
Msa0358330 | Msa1350840 | 0.800571 | 1.353825e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358330 | MtrunA17_Chr3g0116361 | 89.098 | 266 | 26 | 3 | 40 | 303 | 20 | 284 | 5.85e-173 | 480 |
Msa0358330 | MtrunA17_Chr3g0132991 | 28.655 | 171 | 111 | 3 | 131 | 290 | 444 | 614 | 8.40e-16 | 77.8 |
Msa0358330 | MtrunA17_Chr2g0279601 | 28.289 | 152 | 94 | 4 | 152 | 290 | 467 | 616 | 7.17e-14 | 72.0 |
Msa0358330 | MtrunA17_Chr8g0365341 | 32.450 | 151 | 87 | 3 | 156 | 294 | 382 | 529 | 1.04e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358330 | AT3G48480.1 | 48.536 | 239 | 117 | 3 | 66 | 302 | 57 | 291 | 6.37e-78 | 239 |
Msa0358330 | AT1G60220.1 | 34.932 | 146 | 79 | 4 | 156 | 290 | 417 | 557 | 6.38e-16 | 78.6 |
Msa0358330 | AT1G09730.2 | 29.605 | 152 | 92 | 4 | 152 | 290 | 464 | 613 | 4.10e-15 | 76.3 |
Msa0358330 | AT1G09730.1 | 29.605 | 152 | 92 | 4 | 152 | 290 | 496 | 645 | 4.29e-15 | 76.3 |
Msa0358330 | AT4G33620.1 | 28.235 | 170 | 110 | 5 | 131 | 290 | 354 | 521 | 7.79e-14 | 72.4 |
Msa0358330 | AT1G10570.2 | 31.210 | 157 | 93 | 6 | 148 | 294 | 396 | 547 | 3.28e-13 | 70.5 |
Msa0358330 | AT1G10570.1 | 31.210 | 157 | 93 | 6 | 148 | 294 | 397 | 548 | 3.31e-13 | 70.5 |
Msa0358330 | AT1G10570.3 | 31.210 | 157 | 93 | 6 | 148 | 294 | 266 | 417 | 4.41e-13 | 69.7 |
Find 69 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTATGTAATTCAACTTTA+TGG | 0.101287 | 3_1:+43128242 | Msa0358330:three_prime_UTR |
CTTCTGATCTTCTGCCATTT+TGG | 0.150947 | 3_1:+43127475 | Msa0358330:CDS |
GCTTATGGTTTAGCCTTTAC+AGG | 0.253899 | 3_1:+43127232 | Msa0358330:CDS |
TTGCATACATGGACAGCTTA+TGG | 0.286157 | 3_1:+43127217 | Msa0358330:CDS |
ATCAGTGGACTTAAGGAATA+AGG | 0.299254 | 3_1:+43126114 | Msa0358330:intron |
CTGATGAGCATCAGCGATAT+TGG | 0.304272 | 3_1:-43126883 | None:intergenic |
ATTTATCTGACAGGAAAGTA+TGG | 0.307770 | 3_1:+43127163 | Msa0358330:intron |
TGTTCCTATCAGTGGACTTA+AGG | 0.326413 | 3_1:+43126107 | Msa0358330:intron |
TTGACGGGAATAAACATTCT+TGG | 0.328139 | 3_1:-43126164 | None:intergenic |
ACAAGAGAGGTGATAGAAAT+TGG | 0.332426 | 3_1:+43126208 | Msa0358330:CDS |
AGTATGTAATTCAACTTTAT+GGG | 0.334575 | 3_1:+43128243 | Msa0358330:three_prime_UTR |
GGGGAATTTGTTCATATAGA+AGG | 0.345486 | 3_1:+43128172 | Msa0358330:three_prime_UTR |
CAAAGTTCTCGCTAGATCTA+AGG | 0.347758 | 3_1:+43127013 | Msa0358330:CDS |
ATCACGTTGTATGTTGTTGC+TGG | 0.352342 | 3_1:+43127522 | Msa0358330:CDS |
CTGGTTTACCTTCGAAGATC+TGG | 0.357406 | 3_1:+43128063 | Msa0358330:CDS |
GACGAAATTCTATAGTGTTT+CGG | 0.357721 | 3_1:-43125159 | None:intergenic |
TACAAGACATTTATAAAGTC+GGG | 0.360064 | 3_1:+43127696 | Msa0358330:CDS |
AAGAGAAAACTTACAAAGTA+AGG | 0.378887 | 3_1:-43127957 | None:intergenic |
GAAATGAGAAACAAATTGAT+TGG | 0.386737 | 3_1:+43125107 | Msa0358330:five_prime_UTR |
AATCACCAGTGAAGTATGTT+GGG | 0.390373 | 3_1:-43128125 | None:intergenic |
TGACGGGAATAAACATTCTT+GGG | 0.395036 | 3_1:-43126163 | None:intergenic |
GAGAACTTGCAATCCGCTAC+TGG | 0.418161 | 3_1:+43127499 | Msa0358330:CDS |
AAAGCACACTTTCTTATGTC+TGG | 0.419143 | 3_1:-43127583 | None:intergenic |
GAGAATTTGGTTCCTTGAAC+TGG | 0.423213 | 3_1:+43128097 | Msa0358330:exon |
TCTGGTTCAAGCTGCTGCCT+TGG | 0.425200 | 3_1:-43127565 | None:intergenic |
GCTTTACTTGAGCGGCCAAT+TGG | 0.432833 | 3_1:-43125205 | None:intergenic |
ATCCACCGCGATTCTCCAAT+TGG | 0.438582 | 3_1:+43125190 | Msa0358330:five_prime_UTR |
CTTGGGCACAAATCCTGAGC+TGG | 0.440090 | 3_1:-43126146 | None:intergenic |
CGTGTTTACCATACGACTAT+AGG | 0.441885 | 3_1:-43127330 | None:intergenic |
ATTGCAAGTTCTCACCAAAA+TGG | 0.442196 | 3_1:-43127489 | None:intergenic |
GATAGCTGTACTCACTCTTC+AGG | 0.446649 | 3_1:-43128217 | None:intergenic |
ACTCTTCAGGACAAATCAAC+TGG | 0.455255 | 3_1:-43128204 | None:intergenic |
CCCTCCATGCTAAAATTCTC+AGG | 0.460075 | 3_1:-43127930 | None:intergenic |
ATCAATTTCAGCCGCTCTAA+CGG | 0.479334 | 3_1:-43128270 | None:intergenic |
ATTACCTTGGGCACTAAAAG+TGG | 0.479736 | 3_1:-43127755 | None:intergenic |
GTGATAGAAATTGGCCCTAA+AGG | 0.480923 | 3_1:+43126217 | Msa0358330:CDS |
AAAACAATTTAATGAAATAG+AGG | 0.483376 | 3_1:-43127896 | None:intergenic |
GAAGAGGTCGTTTGCATACA+TGG | 0.484637 | 3_1:+43127206 | Msa0358330:CDS |
GATATAAGATCCTTGGTCTC+TGG | 0.486771 | 3_1:-43127725 | None:intergenic |
TGTACGAAGCATTCCTGTAA+AGG | 0.487467 | 3_1:-43127245 | None:intergenic |
TAATCACCAGTGAAGTATGT+TGG | 0.496966 | 3_1:-43128126 | None:intergenic |
GTACAAGACATTTATAAAGT+CGG | 0.498215 | 3_1:+43127695 | Msa0358330:CDS |
TTCAAGCTGCTGCCTTGGAT+CGG | 0.507471 | 3_1:-43127560 | None:intergenic |
AATTTCTATCACCTCTCTTG+TGG | 0.515815 | 3_1:-43126206 | None:intergenic |
TGTTGGGGATATCCAGTTCA+AGG | 0.533735 | 3_1:-43128109 | None:intergenic |
TTACCTTCGAAGATCTGGAT+AGG | 0.538067 | 3_1:+43128068 | Msa0358330:CDS |
ACAGAGATAAGGTGCTGAGT+TGG | 0.540557 | 3_1:+43127265 | Msa0358330:CDS |
AATTCGAGATATAAGATCCT+TGG | 0.548234 | 3_1:-43127732 | None:intergenic |
ATATCCCCAACATACTTCAC+TGG | 0.549910 | 3_1:+43128120 | Msa0358330:three_prime_UTR |
GAATGCTTCGTACAGAGATA+AGG | 0.559251 | 3_1:+43127254 | Msa0358330:CDS |
TTTATCTGACAGGAAAGTAT+GGG | 0.570923 | 3_1:+43127164 | Msa0358330:intron |
AAAATCAAGAGAACATTCAA+AGG | 0.578542 | 3_1:+43126987 | Msa0358330:CDS |
TGAGAATCGCTTTACTTGAG+CGG | 0.591583 | 3_1:-43125213 | None:intergenic |
AAACCTATCCAGATCTTCGA+AGG | 0.596730 | 3_1:-43128071 | None:intergenic |
CAAAATGGCAGAAGATCAGA+AGG | 0.598520 | 3_1:-43127474 | None:intergenic |
CTCTTGAAATGACCGATCCA+AGG | 0.601300 | 3_1:+43127548 | Msa0358330:CDS |
AGAGAAAACTTACAAAGTAA+GGG | 0.608059 | 3_1:-43127956 | None:intergenic |
GAAAATCGAGACCACAAGAG+AGG | 0.609773 | 3_1:+43126195 | Msa0358330:CDS |
ACAAGACATTTATAAAGTCG+GGG | 0.610983 | 3_1:+43127697 | Msa0358330:CDS |
TTATGGGAATTCCGTTAGAG+CGG | 0.613562 | 3_1:+43128259 | Msa0358330:three_prime_UTR |
ACCAAGACTGTAAAAGTGAG+AGG | 0.627754 | 3_1:+43126915 | Msa0358330:CDS |
GAGAAACAAATTGATTGGAG+TGG | 0.629238 | 3_1:+43125112 | Msa0358330:five_prime_UTR |
ATCACCAGTGAAGTATGTTG+GGG | 0.633381 | 3_1:-43128124 | None:intergenic |
GGAGAAATTGACTCAAGACA+TGG | 0.634059 | 3_1:+43126858 | Msa0358330:CDS |
CAGAAGAGCACTGAACTCAA+CGG | 0.657975 | 3_1:+43125135 | Msa0358330:five_prime_UTR |
CAAGACATTTATAAAGTCGG+GGG | 0.675790 | 3_1:+43127698 | Msa0358330:CDS |
AGCGGCCAATTGGAGAATCG+CGG | 0.677805 | 3_1:-43125195 | None:intergenic |
GGCCAATTGGAGAATCGCGG+TGG | 0.690349 | 3_1:-43125192 | None:intergenic |
CATACAACGTGATCCAGTAG+CGG | 0.720222 | 3_1:-43127512 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTTTTTTTTTTCATTATTT+GGG | + | chr3_1:43125429-43125448 | Msa0358330:intron | 10.0% |
!!! | AATTTTAAAAAATTAAGGTA+CGG | - | chr3_1:43125977-43125996 | None:intergenic | 10.0% |
!!! | CATCAAATTTTAAAAAATTA+AGG | - | chr3_1:43125982-43126001 | None:intergenic | 10.0% |
!! | AAAAATAGTTATAAGATTAT+AGG | + | chr3_1:43126589-43126608 | Msa0358330:intron | 10.0% |
!! | TTGAATAATTAATCAAAAAA+GGG | - | chr3_1:43127363-43127382 | None:intergenic | 10.0% |
!! | ATTGAATAATTAATCAAAAA+AGG | - | chr3_1:43127364-43127383 | None:intergenic | 10.0% |
!!! | TAATTAATAATTTTCAAGAA+TGG | - | chr3_1:43127986-43128005 | None:intergenic | 10.0% |
!!! | ATTATTTTATTTTACATACA+TGG | + | chr3_1:43128145-43128164 | Msa0358330:three_prime_UTR | 10.0% |
!!! | TCTATTTTTATTTTTTAACT+CGG | + | chr3_1:43128336-43128355 | Msa0358330:three_prime_UTR | 10.0% |
!! | GAATATGAAGTAAAATTTAA+AGG | - | chr3_1:43125255-43125274 | None:intergenic | 15.0% |
!! | CCAAATAATGAAAAAAAAAA+AGG | - | chr3_1:43125431-43125450 | None:intergenic | 15.0% |
!!! | CCTTTTTTTTTTTCATTATT+TGG | + | chr3_1:43125428-43125447 | Msa0358330:intron | 15.0% |
!!! | AAACTATGTTTTTTTTTTTG+TGG | + | chr3_1:43125564-43125583 | Msa0358330:intron | 15.0% |
!!! | TTGTAAGTTTTTTTTTTGTT+TGG | + | chr3_1:43125711-43125730 | Msa0358330:intron | 15.0% |
!!! | AACAACAATTTTTGAATTTA+CGG | - | chr3_1:43125746-43125765 | None:intergenic | 15.0% |
!!! | ATTTTAAAAAATTAAGGTAC+GGG | - | chr3_1:43125976-43125995 | None:intergenic | 15.0% |
!! | AAAAAAAAAACTAACCTTTA+GGG | - | chr3_1:43126234-43126253 | None:intergenic | 15.0% |
!! | AAAAAAAAAAACTAACCTTT+AGG | - | chr3_1:43126235-43126254 | None:intergenic | 15.0% |
!!! | TAAAAAAAACATTTTCACAA+AGG | + | chr3_1:43127293-43127312 | Msa0358330:CDS | 15.0% |
!! | TTGACATTTAACAAATAAAA+TGG | - | chr3_1:43127405-43127424 | None:intergenic | 15.0% |
!!! | TTTGAAATCATAATTTTGTA+GGG | + | chr3_1:43127441-43127460 | Msa0358330:intron | 15.0% |
!! | AAAACAATTTAATGAAATAG+AGG | - | chr3_1:43127899-43127918 | None:intergenic | 15.0% |
!!! | CTATTTCATTAAATTGTTTT+TGG | + | chr3_1:43127899-43127918 | Msa0358330:CDS | 15.0% |
!!! | CTTCAATAATTACTTTTTAC+AGG | - | chr3_1:43125066-43125085 | None:intergenic | 20.0% |
!! | TATTGAAGAAAAAGTGAAAT+AGG | + | chr3_1:43125078-43125097 | Msa0358330:five_prime_UTR | 20.0% |
!!! | TTGCTTTTTGTGTAATTTAT+AGG | + | chr3_1:43125379-43125398 | Msa0358330:intron | 20.0% |
!!! | TGCTTTTTGTGTAATTTATA+GGG | + | chr3_1:43125380-43125399 | Msa0358330:intron | 20.0% |
!!! | TTTTTTTTTCATTATTTGGG+TGG | + | chr3_1:43125432-43125451 | Msa0358330:intron | 20.0% |
!!! | TTTTTTTTCATTATTTGGGT+GGG | + | chr3_1:43125433-43125452 | Msa0358330:intron | 20.0% |
!!! | ATAACAATGTTTCTAAATGT+GGG | - | chr3_1:43125625-43125644 | None:intergenic | 20.0% |
!!! | TATAACAATGTTTCTAAATG+TGG | - | chr3_1:43125626-43125645 | None:intergenic | 20.0% |
!! | CATTTAGAAACATTGTTATA+AGG | + | chr3_1:43125626-43125645 | Msa0358330:intron | 20.0% |
!! | AAACATTGTTATAAGGTTAT+AGG | + | chr3_1:43125633-43125652 | Msa0358330:intron | 20.0% |
!!! | ACAACAATTTTTGAATTTAC+GGG | - | chr3_1:43125745-43125764 | None:intergenic | 20.0% |
!!! | TAATGTTTTTACAACAACAA+TGG | + | chr3_1:43125902-43125921 | Msa0358330:intron | 20.0% |
!! | TTGTGTAAAGATTCTATATA+AGG | - | chr3_1:43126380-43126399 | None:intergenic | 20.0% |
!! | ATAAATTGCAGATATAAATG+CGG | - | chr3_1:43126450-43126469 | None:intergenic | 20.0% |
!! | TCCCAATTAAAATAAGTTTA+CGG | + | chr3_1:43126553-43126572 | Msa0358330:intron | 20.0% |
!!! | ACCGTAAACTTATTTTAATT+GGG | - | chr3_1:43126557-43126576 | None:intergenic | 20.0% |
!!! | AACCGTAAACTTATTTTAAT+TGG | - | chr3_1:43126558-43126577 | None:intergenic | 20.0% |
!!! | TTATAACTATTTTTTGCAAG+TGG | - | chr3_1:43126583-43126602 | None:intergenic | 20.0% |
!!! | TTTTTACATTTAGTATTCCT+CGG | + | chr3_1:43126952-43126971 | Msa0358330:CDS | 20.0% |
!!! | ATAAATGTTATTTATCTGAC+AGG | + | chr3_1:43127154-43127173 | Msa0358330:intron | 20.0% |
!! | CTACAAAATTATGATTTCAA+AGG | - | chr3_1:43127442-43127461 | None:intergenic | 20.0% |
!!! | CTTTGAAATCATAATTTTGT+AGG | + | chr3_1:43127440-43127459 | Msa0358330:intron | 20.0% |
!!! | TTGAAATCATAATTTTGTAG+GGG | + | chr3_1:43127442-43127461 | Msa0358330:intron | 20.0% |
!!! | TTTATTTTACATACATGGTA+AGG | + | chr3_1:43128150-43128169 | Msa0358330:three_prime_UTR | 20.0% |
!!! | TTATTTTACATACATGGTAA+GGG | + | chr3_1:43128151-43128170 | Msa0358330:three_prime_UTR | 20.0% |
!! | AAGTATGTAATTCAACTTTA+TGG | + | chr3_1:43128242-43128261 | Msa0358330:three_prime_UTR | 20.0% |
!! | AGTATGTAATTCAACTTTAT+GGG | + | chr3_1:43128243-43128262 | Msa0358330:three_prime_UTR | 20.0% |
! | GAAATGAGAAACAAATTGAT+TGG | + | chr3_1:43125107-43125126 | Msa0358330:five_prime_UTR | 25.0% |
! | GAAGTAAAATTTAAAGGTGA+AGG | - | chr3_1:43125249-43125268 | None:intergenic | 25.0% |
!!! | TTTTTTTCATTATTTGGGTG+GGG | + | chr3_1:43125434-43125453 | Msa0358330:intron | 25.0% |
!!! | TTTCTTTCACATTGATTTTG+AGG | + | chr3_1:43125467-43125486 | Msa0358330:intron | 25.0% |
! | AAAAACATAGTTTCTGAATG+TGG | - | chr3_1:43125557-43125576 | None:intergenic | 25.0% |
! | TATAAGGTTATAGGTGTTTA+CGG | + | chr3_1:43125642-43125661 | Msa0358330:intron | 25.0% |
!! | CAACAATTTTTGAATTTACG+GGG | - | chr3_1:43125744-43125763 | None:intergenic | 25.0% |
! | CAAAAAACACTATAATTGCA+GGG | + | chr3_1:43125860-43125879 | Msa0358330:intron | 25.0% |
! | AAATTTGATGTATTTCGTAC+TGG | + | chr3_1:43125992-43126011 | Msa0358330:intron | 25.0% |
! | AATTTGATGTATTTCGTACT+GGG | + | chr3_1:43125993-43126012 | Msa0358330:intron | 25.0% |
!! | TATTTTCACACAAACAACAA+TGG | - | chr3_1:43126314-43126333 | None:intergenic | 25.0% |
! | TAAATTGCAGATATAAATGC+GGG | - | chr3_1:43126449-43126468 | None:intergenic | 25.0% |
!!! | TTTGTGTTTGCTATTAACAT+AGG | + | chr3_1:43126525-43126544 | Msa0358330:intron | 25.0% |
!!! | TTGTGTTTGCTATTAACATA+GGG | + | chr3_1:43126526-43126545 | Msa0358330:intron | 25.0% |
! | TTTGAGAAGTTCAATAAATC+TGG | + | chr3_1:43126753-43126772 | Msa0358330:intron | 25.0% |
! | ATCTGGATATTGATATCTAT+TGG | + | chr3_1:43126770-43126789 | Msa0358330:intron | 25.0% |
! | TCTGGATATTGATATCTATT+GGG | + | chr3_1:43126771-43126790 | Msa0358330:intron | 25.0% |
! | AAAATCAAGAGAACATTCAA+AGG | + | chr3_1:43126987-43127006 | Msa0358330:CDS | 25.0% |
!! | TCAATGATTTTTGATGGAAA+AGG | + | chr3_1:43127098-43127117 | Msa0358330:intron | 25.0% |
!!! | AAATGGCTCTTGTTATTAAA+GGG | - | chr3_1:43127388-43127407 | None:intergenic | 25.0% |
!!! | AAAATGGCTCTTGTTATTAA+AGG | - | chr3_1:43127389-43127408 | None:intergenic | 25.0% |
!! | ATTTGTTAAATGTCAATCCA+CGG | + | chr3_1:43127409-43127428 | Msa0358330:intron | 25.0% |
!! | TGAAATCATAATTTTGTAGG+GGG | + | chr3_1:43127443-43127462 | Msa0358330:intron | 25.0% |
! | GTACAAGACATTTATAAAGT+CGG | + | chr3_1:43127695-43127714 | Msa0358330:CDS | 25.0% |
! | TACAAGACATTTATAAAGTC+GGG | + | chr3_1:43127696-43127715 | Msa0358330:CDS | 25.0% |
! | TGGACATGAAAATTGTAAAA+GGG | - | chr3_1:43127787-43127806 | None:intergenic | 25.0% |
! | TTGGACATGAAAATTGTAAA+AGG | - | chr3_1:43127788-43127807 | None:intergenic | 25.0% |
!!! | ATTGGTTTTCTTTTAACCAT+TGG | - | chr3_1:43127824-43127843 | None:intergenic | 25.0% |
! | AGAGAAAACTTACAAAGTAA+GGG | - | chr3_1:43127959-43127978 | None:intergenic | 25.0% |
! | AAGAGAAAACTTACAAAGTA+AGG | - | chr3_1:43127960-43127979 | None:intergenic | 25.0% |
!!! | GATTTAATTTTGTTTGCCAT+TGG | + | chr3_1:43128019-43128038 | Msa0358330:intron | 25.0% |
!! | TATTTTACATACATGGTAAG+GGG | + | chr3_1:43128152-43128171 | Msa0358330:three_prime_UTR | 25.0% |
GACGAAATTCTATAGTGTTT+CGG | - | chr3_1:43125162-43125181 | None:intergenic | 30.0% | |
!!! | TTTTTTCATTATTTGGGTGG+GGG | + | chr3_1:43125435-43125454 | Msa0358330:intron | 30.0% |
!!! | ATTTTGAGGTACTACTGTTA+GGG | + | chr3_1:43125481-43125500 | Msa0358330:intron | 30.0% |
TACAAATGCTATAATTGCAG+AGG | - | chr3_1:43125696-43125715 | None:intergenic | 30.0% | |
ATCTAAACAGAAAATCTTGC+AGG | + | chr3_1:43125828-43125847 | Msa0358330:intron | 30.0% | |
TCTAAACAGAAAATCTTGCA+GGG | + | chr3_1:43125829-43125848 | Msa0358330:intron | 30.0% | |
!!! | CCTGCAATTATAGTGTTTTT+TGG | - | chr3_1:43125862-43125881 | None:intergenic | 30.0% |
CCAAAAAACACTATAATTGC+AGG | + | chr3_1:43125859-43125878 | Msa0358330:intron | 30.0% | |
AACAATGGTAGTAATTCACT+TGG | + | chr3_1:43125917-43125936 | Msa0358330:intron | 30.0% | |
ACTTATGAGCAATGATTCAT+AGG | - | chr3_1:43126031-43126050 | None:intergenic | 30.0% | |
! | ATTGAGAAGCTATTTCAAAC+TGG | + | chr3_1:43126055-43126074 | Msa0358330:intron | 30.0% |
! | GATTTTCTTCTTTCTTTGAC+GGG | - | chr3_1:43126182-43126201 | None:intergenic | 30.0% |
! | CGATTTTCTTCTTTCTTTGA+CGG | - | chr3_1:43126183-43126202 | None:intergenic | 30.0% |
GCCTTCGTTTATTCAATTTA+CGG | + | chr3_1:43126282-43126301 | Msa0358330:intron | 30.0% | |
CCTTCGTTTATTCAATTTAC+GGG | + | chr3_1:43126283-43126302 | Msa0358330:intron | 30.0% | |
CTATATAAGGCACAAAAAGT+AGG | - | chr3_1:43126367-43126386 | None:intergenic | 30.0% | |
AAATTGCAGATATAAATGCG+GGG | - | chr3_1:43126448-43126467 | None:intergenic | 30.0% | |
ATTGCGTCTATAAACATCAT+AGG | + | chr3_1:43126483-43126502 | Msa0358330:intron | 30.0% | |
ACATAATCAACTTCTCTGAT+TGG | - | chr3_1:43126799-43126818 | None:intergenic | 30.0% | |
! | CACAGTTCAATGATTTTTGA+TGG | + | chr3_1:43127092-43127111 | Msa0358330:intron | 30.0% |
ATTTATCTGACAGGAAAGTA+TGG | + | chr3_1:43127163-43127182 | Msa0358330:intron | 30.0% | |
! | TTTATCTGACAGGAAAGTAT+GGG | + | chr3_1:43127164-43127183 | Msa0358330:intron | 30.0% |
! | TTTTTGTTCCTATAGTCGTA+TGG | + | chr3_1:43127322-43127341 | Msa0358330:CDS | 30.0% |
AAATTGCAAATACTCTGACA+GGG | - | chr3_1:43127647-43127666 | None:intergenic | 30.0% | |
TAAATTGCAAATACTCTGAC+AGG | - | chr3_1:43127648-43127667 | None:intergenic | 30.0% | |
CTGAAAATGAAGATAAAAGC+TGG | - | chr3_1:43127671-43127690 | None:intergenic | 30.0% | |
ACAAGACATTTATAAAGTCG+GGG | + | chr3_1:43127697-43127716 | Msa0358330:CDS | 30.0% | |
AATTCGAGATATAAGATCCT+TGG | - | chr3_1:43127735-43127754 | None:intergenic | 30.0% | |
GGACATGAAAATTGTAAAAG+GGG | - | chr3_1:43127786-43127805 | None:intergenic | 30.0% | |
! | CATTGGTGATTTGATTACAT+TGG | - | chr3_1:43127807-43127826 | None:intergenic | 30.0% |
CAATGTAATCAAATCACCAA+TGG | + | chr3_1:43127805-43127824 | Msa0358330:intron | 30.0% | |
AGAAAACCAATCTATATTGC+AGG | + | chr3_1:43127833-43127852 | Msa0358330:intron | 30.0% | |
!! | AATTTTGTTTGCCATTGGTA+TGG | + | chr3_1:43128024-43128043 | Msa0358330:intron | 30.0% |
! | ATTTTACATACATGGTAAGG+GGG | + | chr3_1:43128153-43128172 | Msa0358330:three_prime_UTR | 30.0% |
GAGAAACAAATTGATTGGAG+TGG | + | chr3_1:43125112-43125131 | Msa0358330:five_prime_UTR | 35.0% | |
TTGCGTAAACATGAGATTGA+AGG | - | chr3_1:43125351-43125370 | None:intergenic | 35.0% | |
!!! | GATTTTGAGGTACTACTGTT+AGG | + | chr3_1:43125480-43125499 | Msa0358330:intron | 35.0% |
! | CATAGTTTTTGCGATTTAGG+TGG | + | chr3_1:43125504-43125523 | Msa0358330:intron | 35.0% |
TAGTTTCTGAATGTGGAAGA+TGG | - | chr3_1:43125550-43125569 | None:intergenic | 35.0% | |
GGTGTTTACGGAAAGTTAAA+AGG | + | chr3_1:43125654-43125673 | Msa0358330:intron | 35.0% | |
CTAAACAGAAAATCTTGCAG+GGG | + | chr3_1:43125830-43125849 | Msa0358330:intron | 35.0% | |
AATGATTCATAGGTACGTGT+AGG | - | chr3_1:43126021-43126040 | None:intergenic | 35.0% | |
TATTCCTTAAGTCCACTGAT+AGG | - | chr3_1:43126114-43126133 | None:intergenic | 35.0% | |
! | ATCAGTGGACTTAAGGAATA+AGG | + | chr3_1:43126114-43126133 | Msa0358330:intron | 35.0% |
TGACGGGAATAAACATTCTT+GGG | - | chr3_1:43126166-43126185 | None:intergenic | 35.0% | |
TTGACGGGAATAAACATTCT+TGG | - | chr3_1:43126167-43126186 | None:intergenic | 35.0% | |
AATTTCTATCACCTCTCTTG+TGG | - | chr3_1:43126209-43126228 | None:intergenic | 35.0% | |
ACAAGAGAGGTGATAGAAAT+TGG | + | chr3_1:43126208-43126227 | Msa0358330:CDS | 35.0% | |
CCCGTAAATTGAATAAACGA+AGG | - | chr3_1:43126286-43126305 | None:intergenic | 35.0% | |
AACTTCTCAAAAAACACTCG+TGG | - | chr3_1:43126744-43126763 | None:intergenic | 35.0% | |
! | GTTCTCTTGATTTTTGTTCG+TGG | - | chr3_1:43126981-43127000 | None:intergenic | 35.0% |
!! | GTTTTTCAGAAGATAGGAAG+AGG | + | chr3_1:43127190-43127209 | Msa0358330:CDS | 35.0% |
ATTTCAAAGGATAAACTCCG+TGG | - | chr3_1:43127429-43127448 | None:intergenic | 35.0% | |
ATTGCAAGTTCTCACCAAAA+TGG | - | chr3_1:43127492-43127511 | None:intergenic | 35.0% | |
AAAGCACACTTTCTTATGTC+TGG | - | chr3_1:43127586-43127605 | None:intergenic | 35.0% | |
CAAGACATTTATAAAGTCGG+GGG | + | chr3_1:43127698-43127717 | Msa0358330:CDS | 35.0% | |
! | AAAAAGACGACACTGATTGT+GGG | + | chr3_1:43127865-43127884 | Msa0358330:CDS | 35.0% |
!! | GGATAGGTTTTGTGAGAATT+TGG | + | chr3_1:43128084-43128103 | Msa0358330:CDS | 35.0% |
AATCACCAGTGAAGTATGTT+GGG | - | chr3_1:43128128-43128147 | None:intergenic | 35.0% | |
TAATCACCAGTGAAGTATGT+TGG | - | chr3_1:43128129-43128148 | None:intergenic | 35.0% | |
! | GGGGAATTTGTTCATATAGA+AGG | + | chr3_1:43128172-43128191 | Msa0358330:three_prime_UTR | 35.0% |
TGAGAATCGCTTTACTTGAG+CGG | - | chr3_1:43125216-43125235 | None:intergenic | 40.0% | |
CATCATCACAGAAACAGCAA+TGG | - | chr3_1:43125277-43125296 | None:intergenic | 40.0% | |
! | GGGCATAGTTTTTGCGATTT+AGG | + | chr3_1:43125501-43125520 | Msa0358330:intron | 40.0% |
GTCTCTATAAGCTGATGTCA+GGG | - | chr3_1:43125774-43125793 | None:intergenic | 40.0% | |
AGTCTCTATAAGCTGATGTC+AGG | - | chr3_1:43125775-43125794 | None:intergenic | 40.0% | |
! | TGTTCCTATCAGTGGACTTA+AGG | + | chr3_1:43126107-43126126 | Msa0358330:intron | 40.0% |
AAGGAAAGAAAAACCAGCTC+AGG | + | chr3_1:43126133-43126152 | Msa0358330:CDS | 40.0% | |
GTGATAGAAATTGGCCCTAA+AGG | + | chr3_1:43126217-43126236 | Msa0358330:CDS | 40.0% | |
! | GCAAGAGTGTATCATGTATG+AGG | - | chr3_1:43126264-43126283 | None:intergenic | 40.0% |
!! | ATCAGTCGATTTTGCGAATC+AGG | + | chr3_1:43126833-43126852 | Msa0358330:intron | 40.0% |
! | GGAGAAATTGACTCAAGACA+TGG | + | chr3_1:43126858-43126877 | Msa0358330:CDS | 40.0% |
ACCAAGACTGTAAAAGTGAG+AGG | + | chr3_1:43126915-43126934 | Msa0358330:CDS | 40.0% | |
!! | TCCTCTCACTTTTACAGTCT+TGG | - | chr3_1:43126919-43126938 | None:intergenic | 40.0% |
CAAAGTTCTCGCTAGATCTA+AGG | + | chr3_1:43127013-43127032 | Msa0358330:CDS | 40.0% | |
!! | GGGAGAGTTTTTCAGAAGAT+AGG | + | chr3_1:43127184-43127203 | Msa0358330:CDS | 40.0% |
TTGCATACATGGACAGCTTA+TGG | + | chr3_1:43127217-43127236 | Msa0358330:CDS | 40.0% | |
! | GCTTATGGTTTAGCCTTTAC+AGG | + | chr3_1:43127232-43127251 | Msa0358330:CDS | 40.0% |
! | TGTACGAAGCATTCCTGTAA+AGG | - | chr3_1:43127248-43127267 | None:intergenic | 40.0% |
GAATGCTTCGTACAGAGATA+AGG | + | chr3_1:43127254-43127273 | Msa0358330:CDS | 40.0% | |
CGTGTTTACCATACGACTAT+AGG | - | chr3_1:43127333-43127352 | None:intergenic | 40.0% | |
CAAAATGGCAGAAGATCAGA+AGG | - | chr3_1:43127477-43127496 | None:intergenic | 40.0% | |
!! | CTTCTGATCTTCTGCCATTT+TGG | + | chr3_1:43127475-43127494 | Msa0358330:CDS | 40.0% |
ATCACGTTGTATGTTGTTGC+TGG | + | chr3_1:43127522-43127541 | Msa0358330:CDS | 40.0% | |
GATATAAGATCCTTGGTCTC+TGG | - | chr3_1:43127728-43127747 | None:intergenic | 40.0% | |
!! | AATTCCACTTTTAGTGCCCA+AGG | + | chr3_1:43127751-43127770 | Msa0358330:CDS | 40.0% |
ATTACCTTGGGCACTAAAAG+TGG | - | chr3_1:43127758-43127777 | None:intergenic | 40.0% | |
AAAGGGGTCGTTATTACCTT+GGG | - | chr3_1:43127770-43127789 | None:intergenic | 40.0% | |
AAAAGGGGTCGTTATTACCT+TGG | - | chr3_1:43127771-43127790 | None:intergenic | 40.0% | |
! | TCAGTGTCGTCTTTTTGTTG+TGG | - | chr3_1:43127861-43127880 | None:intergenic | 40.0% |
! | CAAAAAGACGACACTGATTG+TGG | + | chr3_1:43127864-43127883 | Msa0358330:CDS | 40.0% |
!! | ACCTGAGAATTTTAGCATGG+AGG | + | chr3_1:43127929-43127948 | Msa0358330:CDS | 40.0% |
!! | CCTGAGAATTTTAGCATGGA+GGG | + | chr3_1:43127930-43127949 | Msa0358330:CDS | 40.0% |
!! | CTGAGAATTTTAGCATGGAG+GGG | + | chr3_1:43127931-43127950 | Msa0358330:CDS | 40.0% |
TTTCATCTGCACCATACCAA+TGG | - | chr3_1:43128038-43128057 | None:intergenic | 40.0% | |
TGGTGCAGATGAAAAAAGAC+TGG | + | chr3_1:43128044-43128063 | Msa0358330:intron | 40.0% | |
TTACCTTCGAAGATCTGGAT+AGG | + | chr3_1:43128068-43128087 | Msa0358330:CDS | 40.0% | |
AAACCTATCCAGATCTTCGA+AGG | - | chr3_1:43128074-43128093 | None:intergenic | 40.0% | |
! | GAGAATTTGGTTCCTTGAAC+TGG | + | chr3_1:43128097-43128116 | Msa0358330:exon | 40.0% |
ATATCCCCAACATACTTCAC+TGG | + | chr3_1:43128120-43128139 | Msa0358330:three_prime_UTR | 40.0% | |
ATCACCAGTGAAGTATGTTG+GGG | - | chr3_1:43128127-43128146 | None:intergenic | 40.0% | |
ACTCTTCAGGACAAATCAAC+TGG | - | chr3_1:43128207-43128226 | None:intergenic | 40.0% | |
TTATGGGAATTCCGTTAGAG+CGG | + | chr3_1:43128259-43128278 | Msa0358330:three_prime_UTR | 40.0% | |
ATCAATTTCAGCCGCTCTAA+CGG | - | chr3_1:43128273-43128292 | None:intergenic | 40.0% | |
!! | CAGAAGAGCACTGAACTCAA+CGG | + | chr3_1:43125135-43125154 | Msa0358330:five_prime_UTR | 45.0% |
TGTGGTATCGTTCCTACCAA+CGG | + | chr3_1:43125582-43125601 | Msa0358330:intron | 45.0% | |
CCACTGATAGGAACAATGAC+AGG | - | chr3_1:43126102-43126121 | None:intergenic | 45.0% | |
CCTGTCATTGTTCCTATCAG+TGG | + | chr3_1:43126099-43126118 | Msa0358330:intron | 45.0% | |
GAAAATCGAGACCACAAGAG+AGG | + | chr3_1:43126195-43126214 | Msa0358330:CDS | 45.0% | |
!! | GTCGATTTTGCGAATCAGGA+AGG | + | chr3_1:43126837-43126856 | Msa0358330:intron | 45.0% |
CTGATGAGCATCAGCGATAT+TGG | - | chr3_1:43126886-43126905 | None:intergenic | 45.0% | |
GAAGAGGTCGTTTGCATACA+TGG | + | chr3_1:43127206-43127225 | Msa0358330:CDS | 45.0% | |
!! | ACAGAGATAAGGTGCTGAGT+TGG | + | chr3_1:43127265-43127284 | Msa0358330:CDS | 45.0% |
!! | CATAATTTTGTAGGGGGCAC+TGG | + | chr3_1:43127449-43127468 | Msa0358330:intron | 45.0% |
CATACAACGTGATCCAGTAG+CGG | - | chr3_1:43127515-43127534 | None:intergenic | 45.0% | |
CTCTTGAAATGACCGATCCA+AGG | + | chr3_1:43127548-43127567 | Msa0358330:CDS | 45.0% | |
ACATTTATAAAGTCGGGGGC+AGG | + | chr3_1:43127702-43127721 | Msa0358330:CDS | 45.0% | |
GTGGCACCTGCAATATAGAT+TGG | - | chr3_1:43127842-43127861 | None:intergenic | 45.0% | |
!! | CGCACCTGAGAATTTTAGCA+TGG | + | chr3_1:43127926-43127945 | Msa0358330:CDS | 45.0% |
CCCTCCATGCTAAAATTCTC+AGG | - | chr3_1:43127933-43127952 | None:intergenic | 45.0% | |
CTGGTTTACCTTCGAAGATC+TGG | + | chr3_1:43128063-43128082 | Msa0358330:CDS | 45.0% | |
TGTTGGGGATATCCAGTTCA+AGG | - | chr3_1:43128112-43128131 | None:intergenic | 45.0% | |
GATAGCTGTACTCACTCTTC+AGG | - | chr3_1:43128220-43128239 | None:intergenic | 45.0% | |
ATCCACCGCGATTCTCCAAT+TGG | + | chr3_1:43125190-43125209 | Msa0358330:five_prime_UTR | 50.0% | |
GCTTTACTTGAGCGGCCAAT+TGG | - | chr3_1:43125208-43125227 | None:intergenic | 50.0% | |
! | ATTTTTGTTCGTGGTCGCCG+AGG | - | chr3_1:43126972-43126991 | None:intergenic | 50.0% |
GAGAACTTGCAATCCGCTAC+TGG | + | chr3_1:43127499-43127518 | Msa0358330:CDS | 50.0% | |
TTCAAGCTGCTGCCTTGGAT+CGG | - | chr3_1:43127563-43127582 | None:intergenic | 50.0% | |
AGCGGCCAATTGGAGAATCG+CGG | - | chr3_1:43125198-43125217 | None:intergenic | 55.0% | |
GTGAGCTTAGCTCCGTTGGT+AGG | - | chr3_1:43125597-43125616 | None:intergenic | 55.0% | |
CCTTGTGAGCTTAGCTCCGT+TGG | - | chr3_1:43125601-43125620 | None:intergenic | 55.0% | |
CCAACGGAGCTAAGCTCACA+AGG | + | chr3_1:43125598-43125617 | Msa0358330:intron | 55.0% | |
CTTGGGCACAAATCCTGAGC+TGG | - | chr3_1:43126149-43126168 | None:intergenic | 55.0% | |
! | TCTGGTTCAAGCTGCTGCCT+TGG | - | chr3_1:43127568-43127587 | None:intergenic | 55.0% |
GGCCAATTGGAGAATCGCGG+TGG | - | chr3_1:43125195-43125214 | None:intergenic | 60.0% | |
CGGGGGCAGGCCAGAGACCA+AGG | + | chr3_1:43127715-43127734 | Msa0358330:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 43125062 | 43128465 | 43125062 | ID=Msa0358330;Name=Msa0358330 |
chr3_1 | mRNA | 43125062 | 43128465 | 43125062 | ID=Msa0358330-mRNA-1;Parent=Msa0358330;Name=Msa0358330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=178|1|1|1|0.85|0.87|8|351|304 |
chr3_1 | exon | 43125062 | 43125240 | 43125062 | ID=Msa0358330-mRNA-1:exon:7572;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43126119 | 43126238 | 43126119 | ID=Msa0358330-mRNA-1:exon:7573;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43126838 | 43127072 | 43126838 | ID=Msa0358330-mRNA-1:exon:7574;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43127176 | 43127343 | 43127176 | ID=Msa0358330-mRNA-1:exon:7575;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43127462 | 43127596 | 43127462 | ID=Msa0358330-mRNA-1:exon:7576;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43127691 | 43127772 | 43127691 | ID=Msa0358330-mRNA-1:exon:7577;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43127855 | 43127965 | 43127855 | ID=Msa0358330-mRNA-1:exon:7578;Parent=Msa0358330-mRNA-1 |
chr3_1 | exon | 43128052 | 43128465 | 43128052 | ID=Msa0358330-mRNA-1:exon:7579;Parent=Msa0358330-mRNA-1 |
chr3_1 | five_prime_UTR | 43125062 | 43125239 | 43125062 | ID=Msa0358330-mRNA-1:five_prime_utr;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43125240 | 43125240 | 43125240 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43126119 | 43126238 | 43126119 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43126838 | 43127072 | 43126838 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43127176 | 43127343 | 43127176 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43127462 | 43127596 | 43127462 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43127691 | 43127772 | 43127691 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43127855 | 43127965 | 43127855 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | CDS | 43128052 | 43128114 | 43128052 | ID=Msa0358330-mRNA-1:cds;Parent=Msa0358330-mRNA-1 |
chr3_1 | three_prime_UTR | 43128115 | 43128465 | 43128115 | ID=Msa0358330-mRNA-1:three_prime_utr;Parent=Msa0358330-mRNA-1 |
Gene Sequence |
Protein sequence |