AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283840 MtrunA17_Chr8g0355641 96.815 157 5 0 1 157 1 157 1.17e-111 313
Msa1283840 MtrunA17_Chr8g0355741 75.641 156 38 0 1 156 1 156 3.17e-86 249
Msa1283840 MtrunA17_Chr8g0355721 70.513 156 45 1 1 156 1 155 9.16e-83 240
Msa1283840 MtrunA17_Chr8g0355781 71.523 151 43 0 1 151 1 151 1.10e-81 238
Msa1283840 MtrunA17_Chr8g0355661 69.231 156 47 1 1 156 1 155 3.05e-79 231
Msa1283840 MtrunA17_Chr8g0355761 68.874 151 47 0 1 151 1 151 6.27e-78 228
Msa1283840 MtrunA17_Chr8g0355811 66.026 156 52 1 1 156 1 155 5.62e-77 226
Msa1283840 MtrunA17_Chr8g0355821 66.452 155 51 1 1 155 1 154 6.40e-75 221
Msa1283840 MtrunA17_Chr8g0355791 63.462 156 56 1 1 156 1 155 3.67e-71 211
Msa1283840 MtrunA17_Chr8g0355801 63.462 156 56 1 1 156 1 155 6.27e-71 210
Msa1283840 MtrunA17_Chr8g0355771 62.821 156 57 1 1 156 1 155 3.66e-70 208
Msa1283840 MtrunA17_Chr1g0160371 42.208 154 86 2 1 152 1 153 6.52e-38 127
Msa1283840 MtrunA17_Chr1g0160381 39.610 154 90 2 1 152 5 157 2.83e-36 122
Msa1283840 MtrunA17_Chr8g0339261 32.667 150 98 3 6 154 8 155 5.19e-26 96.7
Msa1283840 MtrunA17_Chr1g0160351 46.739 92 47 1 63 152 3 94 2.16e-22 85.5
Msa1283840 MtrunA17_Chr1g0160391 32.692 156 97 4 1 149 1 155 1.17e-21 85.5
Msa1283840 MtrunA17_Chr1g0160801 34.694 147 87 5 7 151 7 146 6.34e-21 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283840 AT5G28010.1 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1283840 AT5G28010.2 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1283840 AT1G70830.5 32.237 152 100 3 3 152 22 172 7.46e-22 86.7
Msa1283840 AT1G70830.3 32.237 152 100 3 3 152 22 172 1.55e-21 86.7
Msa1283840 AT1G70840.1 31.579 152 101 3 3 152 20 170 4.39e-21 84.7
Msa1283840 AT1G70830.2 32.237 152 100 3 3 152 22 172 4.44e-21 86.7
Msa1283840 AT1G70830.1 32.237 152 100 3 3 152 22 172 1.29e-20 86.7
Msa1283840 AT1G70830.1 30.921 152 102 3 3 152 184 334 4.03e-19 82.4
Msa1283840 AT1G70890.1 30.921 152 102 3 3 152 7 157 2.32e-20 82.4
Msa1283840 AT1G70830.4 30.921 152 102 3 3 152 137 287 1.91e-19 82.8
Msa1283840 AT1G70850.2 30.667 150 101 3 3 150 9 157 4.38e-19 80.9
Msa1283840 AT1G70850.3 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1283840 AT1G70850.3 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1283840 AT1G70850.1 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1283840 AT1G70850.1 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1283840 AT1G23120.1 28.105 153 105 3 1 153 1 148 1.99e-18 77.0
Msa1283840 AT1G23120.2 28.758 153 102 4 3 153 51 198 1.17e-17 76.3
Msa1283840 AT1G23130.1 27.152 151 108 2 3 152 10 159 6.07e-17 73.6
Msa1283840 AT5G28000.1 28.947 152 105 3 3 152 13 163 1.68e-16 72.4
Msa1283840 AT1G70870.1 32.450 151 89 4 1 151 1 138 1.73e-16 72.0
Msa1283840 AT4G23670.1 29.605 152 104 3 1 151 1 150 6.06e-16 70.9
Msa1283840 AT1G70880.1 25.658 152 110 3 3 152 8 158 3.24e-15 68.9
Msa1283840 AT1G24020.1 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1283840 AT1G24020.2 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1283840 AT2G01520.1 27.632 152 107 3 1 151 1 150 1.41e-14 67.4
Msa1283840 AT1G14930.1 26.974 152 108 3 1 151 1 150 6.82e-14 65.5
Msa1283840 AT2G01530.1 28.289 152 106 3 1 151 1 150 1.73e-13 64.3
Msa1283840 AT1G35260.1 27.517 149 98 4 7 150 6 149 6.52e-13 62.8
Msa1283840 AT1G35310.1 26.761 142 101 3 13 153 12 151 9.94e-13 62.4
Msa1283840 AT4G14060.1 26.974 152 108 3 1 151 1 150 1.28e-12 62.0
Msa1283840 AT4G23680.1 25.658 152 110 3 1 151 1 150 2.61e-12 61.2
Msa1283840 AT1G30990.1 27.815 151 105 4 1 150 1 148 1.22e-11 59.7
Msa1283840 AT1G14940.1 26.490 151 108 3 1 150 1 149 1.45e-11 59.3

Find 39 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACGTTCTTATGACTTA+TGG 0.201432 8_3:+25599370 None:intergenic
GATTATGTTTCTTGGAAATT+AGG 0.208750 8_3:-25599090 Msa1283840:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_3:-25600843 Msa1283840:CDS
TCATGTTTGATTATGTTTCT+TGG 0.260153 8_3:-25599098 Msa1283840:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_3:+25599448 None:intergenic
GTGTTTGTGTCTTCAATAAA+TGG 0.262059 8_3:-25599204 Msa1283840:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_3:-25599510 Msa1283840:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_3:-25599274 Msa1283840:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_3:-25599126 Msa1283840:three_prime_UTR
GTAAGAGAAGAAAGAAAGAA+AGG 0.402992 8_3:+25600902 None:intergenic
AGGATTAGATATAAAGGATA+GGG 0.417608 8_3:+25599036 None:intergenic
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_3:+25600734 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_3:-25600842 Msa1283840:CDS
TAAGAGAAGAAAGAAAGAAA+GGG 0.460007 8_3:+25600903 None:intergenic
TAGGCAACAGATGAAGTAAT+CGG 0.462518 8_3:-25599071 Msa1283840:three_prime_UTR
AGAAATTGATGAGCACTATA+AGG 0.468901 8_3:-25599569 Msa1283840:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_3:-25599595 Msa1283840:CDS
ACAAATGAATAGTAATGTAA+TGG 0.498210 8_3:-25599350 Msa1283840:three_prime_UTR
TAATGTAATGGCTTAATGCA+TGG 0.501070 8_3:-25599338 Msa1283840:three_prime_UTR
TATTCCATCCAACTATTTGG+AGG 0.505271 8_3:+25599451 None:intergenic
TAGGATTAGATATAAAGGAT+AGG 0.507864 8_3:+25599035 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_3:-25600731 Msa1283840:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_3:+25599587 None:intergenic
CATCATTGAAGTGATTGATA+AGG 0.521648 8_3:-25599536 Msa1283840:CDS
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_3:-25599459 Msa1283840:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_3:-25599665 Msa1283840:intron
AATGTAATGGCTTAATGCAT+GGG 0.552317 8_3:-25599337 Msa1283840:three_prime_UTR
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_3:-25600741 Msa1283840:CDS
ACACAAACTTTAAAGATGAA+AGG 0.566966 8_3:+25599309 None:intergenic
GGATTAGATATAAAGGATAG+GGG 0.569209 8_3:+25599037 None:intergenic
TTTGTATGGAATAAATGTGT+CGG 0.578676 8_3:-25599234 Msa1283840:three_prime_UTR
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_3:-25599455 Msa1283840:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_3:+25599428 None:intergenic
ACTCTGATTCAGTTAAACAC+TGG 0.620261 8_3:-25600704 Msa1283840:CDS
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_3:+25600809 None:intergenic
ATGTAATGGCTTAATGCATG+GGG 0.641479 8_3:-25599336 Msa1283840:three_prime_UTR
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_3:-25599398 Msa1283840:CDS
GAAGTGATTGATAAGGCTGA+TGG 0.663192 8_3:-25599529 Msa1283840:CDS
AAACACTGGACTCATGTCCG+AGG 0.721608 8_3:-25600690 Msa1283840:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTACAATTTTTTTTT+TGG - chr8_3:25600091-25600110 Msa1283840:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG - chr8_3:25600092-25600111 Msa1283840:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_3:25600256-25600275 None:intergenic 10.0%
!!! TTTGTTTACAATTTTTTTTT+TGG - chr8_3:25600091-25600110 Msa1283840:intron 10.0%
!!! TTGTTTACAATTTTTTTTTT+GGG - chr8_3:25600092-25600111 Msa1283840:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_3:25600256-25600275 None:intergenic 10.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG - chr8_3:25599076-25599095 Msa1283840:three_prime_UTR 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_3:25599280-25599299 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_3:25599499-25599518 Msa1283840:CDS 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_3:25599769-25599788 Msa1283840:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_3:25599862-25599881 Msa1283840:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_3:25599979-25599998 Msa1283840:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_3:25600051-25600070 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG - chr8_3:25600093-25600112 Msa1283840:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_3:25600189-25600208 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_3:25600249-25600268 Msa1283840:intron 15.0%
!!! TTAGTTTTTCTTTTCAAAAA+TGG - chr8_3:25599076-25599095 Msa1283840:three_prime_UTR 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_3:25599280-25599299 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_3:25599499-25599518 Msa1283840:CDS 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_3:25599769-25599788 Msa1283840:intron 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_3:25599862-25599881 Msa1283840:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_3:25599979-25599998 Msa1283840:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_3:25600051-25600070 None:intergenic 15.0%
!!! TGTTTACAATTTTTTTTTTG+GGG - chr8_3:25600093-25600112 Msa1283840:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_3:25600189-25600208 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_3:25600249-25600268 Msa1283840:intron 15.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_3:25599429-25599448 Msa1283840:CDS 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_3:25599498-25599517 Msa1283840:CDS 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_3:25599551-25599570 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_3:25599550-25599569 Msa1283840:CDS 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_3:25599586-25599605 Msa1283840:CDS 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_3:25599631-25599650 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_3:25599689-25599708 Msa1283840:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_3:25599694-25599713 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_3:25599773-25599792 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_3:25599991-25600010 Msa1283840:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG - chr8_3:25600600-25600619 Msa1283840:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_3:25600824-25600843 Msa1283840:CDS 20.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_3:25599429-25599448 Msa1283840:CDS 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_3:25599498-25599517 Msa1283840:CDS 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_3:25599551-25599570 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_3:25599550-25599569 Msa1283840:CDS 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_3:25599586-25599605 Msa1283840:CDS 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_3:25599631-25599650 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_3:25599689-25599708 Msa1283840:intron 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_3:25599694-25599713 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_3:25599773-25599792 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_3:25599991-25600010 Msa1283840:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG - chr8_3:25600600-25600619 Msa1283840:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_3:25600824-25600843 Msa1283840:CDS 20.0%
! TAAGAGAAGAAAGAAAGAAA+GGG + chr8_3:25599050-25599069 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_3:25599291-25599310 Msa1283840:three_prime_UTR 25.0%
!! ACTGGATTTATGTTCAATTT+TGG - chr8_3:25599309-25599328 Msa1283840:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_3:25599356-25599375 Msa1283840:three_prime_UTR 25.0%
! ATGTACAAGTACAACTATAA+AGG - chr8_3:25599891-25599910 Msa1283840:intron 25.0%
!! ACACAAACTTTAAAGATGAA+AGG + chr8_3:25600644-25600663 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_3:25600655-25600674 Msa1283840:intron 25.0%
! TTTGTATGGAATAAATGTGT+CGG - chr8_3:25600716-25600735 Msa1283840:CDS 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG - chr8_3:25600763-25600782 Msa1283840:CDS 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_3:25600852-25600871 Msa1283840:CDS 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_3:25600860-25600879 Msa1283840:exon 25.0%
! TAAGAGAAGAAAGAAAGAAA+GGG + chr8_3:25599050-25599069 None:intergenic 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_3:25599291-25599310 Msa1283840:three_prime_UTR 25.0%
!! ACTGGATTTATGTTCAATTT+TGG - chr8_3:25599309-25599328 Msa1283840:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_3:25599356-25599375 Msa1283840:three_prime_UTR 25.0%
! ATGTACAAGTACAACTATAA+AGG - chr8_3:25599891-25599910 Msa1283840:intron 25.0%
!! ACACAAACTTTAAAGATGAA+AGG + chr8_3:25600644-25600663 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_3:25600655-25600674 Msa1283840:intron 25.0%
! TTTGTATGGAATAAATGTGT+CGG - chr8_3:25600716-25600735 Msa1283840:CDS 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG - chr8_3:25600763-25600782 Msa1283840:CDS 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_3:25600852-25600871 Msa1283840:CDS 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_3:25600860-25600879 Msa1283840:exon 25.0%
GTAAGAGAAGAAAGAAAGAA+AGG + chr8_3:25599051-25599070 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_3:25599108-25599127 Msa1283840:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_3:25599717-25599736 Msa1283840:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_3:25599995-25600014 Msa1283840:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_3:25600002-25600021 Msa1283840:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_3:25600029-25600048 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_3:25600043-25600062 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_3:25600381-25600400 Msa1283840:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_3:25600414-25600433 Msa1283840:intron 30.0%
TGTTACGTTCTTATGACTTA+TGG + chr8_3:25600583-25600602 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG - chr8_3:25600612-25600631 Msa1283840:intron 30.0%
AATGTAATGGCTTAATGCAT+GGG - chr8_3:25600613-25600632 Msa1283840:intron 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG - chr8_3:25600702-25600721 Msa1283840:CDS 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_3:25600746-25600765 Msa1283840:CDS 30.0%
GTAAGAGAAGAAAGAAAGAA+AGG + chr8_3:25599051-25599070 None:intergenic 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_3:25599108-25599127 Msa1283840:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_3:25599717-25599736 Msa1283840:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_3:25599995-25600014 Msa1283840:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_3:25600002-25600021 Msa1283840:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_3:25600029-25600048 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_3:25600043-25600062 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_3:25600381-25600400 Msa1283840:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_3:25600414-25600433 Msa1283840:intron 30.0%
TGTTACGTTCTTATGACTTA+TGG + chr8_3:25600583-25600602 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG - chr8_3:25600612-25600631 Msa1283840:intron 30.0%
AATGTAATGGCTTAATGCAT+GGG - chr8_3:25600613-25600632 Msa1283840:intron 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG - chr8_3:25600702-25600721 Msa1283840:CDS 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_3:25600746-25600765 Msa1283840:CDS 30.0%
! TTTTCAAAAATGGTGCTTGC+TGG - chr8_3:25599086-25599105 Msa1283840:three_prime_UTR 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_3:25599107-25599126 Msa1283840:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_3:25599144-25599163 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_3:25599246-25599265 Msa1283840:three_prime_UTR 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_3:25599724-25599743 Msa1283840:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_3:25600001-25600020 Msa1283840:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_3:25600003-25600022 Msa1283840:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_3:25600355-25600374 Msa1283840:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_3:25600491-25600510 Msa1283840:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_3:25600502-25600521 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_3:25600505-25600524 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG - chr8_3:25600614-25600633 Msa1283840:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_3:25600676-25600695 Msa1283840:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_3:25600879-25600898 Msa1283840:five_prime_UTR 35.0%
! TTTTCAAAAATGGTGCTTGC+TGG - chr8_3:25599086-25599105 Msa1283840:three_prime_UTR 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_3:25599107-25599126 Msa1283840:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_3:25599144-25599163 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_3:25599246-25599265 Msa1283840:three_prime_UTR 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_3:25599724-25599743 Msa1283840:intron 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_3:25600001-25600020 Msa1283840:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_3:25600003-25600022 Msa1283840:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_3:25600355-25600374 Msa1283840:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_3:25600491-25600510 Msa1283840:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_3:25600502-25600521 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_3:25600505-25600524 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG - chr8_3:25600614-25600633 Msa1283840:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_3:25600676-25600695 Msa1283840:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_3:25600879-25600898 Msa1283840:five_prime_UTR 35.0%
TACCTTCGATTTCACAACAG+AGG - chr8_3:25600279-25600298 Msa1283840:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_3:25600280-25600299 Msa1283840:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_3:25600366-25600385 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_3:25600421-25600440 Msa1283840:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_3:25600440-25600459 Msa1283840:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_3:25600495-25600514 Msa1283840:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_3:25600552-25600571 Msa1283840:intron 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_3:25600279-25600298 Msa1283840:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_3:25600280-25600299 Msa1283840:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_3:25600366-25600385 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_3:25600421-25600440 Msa1283840:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_3:25600440-25600459 Msa1283840:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_3:25600495-25600514 Msa1283840:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_3:25600552-25600571 Msa1283840:intron 40.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_3:25599209-25599228 Msa1283840:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_3:25599219-25599238 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_3:25599219-25599238 Msa1283840:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_3:25600525-25600544 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_3:25599209-25599228 Msa1283840:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_3:25599219-25599238 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_3:25599219-25599238 Msa1283840:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_3:25600525-25600544 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_3:25600055-25600074 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_3:25600160-25600179 Msa1283840:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_3:25600161-25600180 Msa1283840:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_3:25600055-25600074 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_3:25600160-25600179 Msa1283840:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_3:25600161-25600180 Msa1283840:intron 5.0%
AAACACTGGACTCATGTCCG+AGG - chr8_3:25599260-25599279 Msa1283840:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_3:25600284-25600303 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_3:25600285-25600304 Msa1283840:intron 50.0%
AAACACTGGACTCATGTCCG+AGG - chr8_3:25599260-25599279 Msa1283840:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_3:25600284-25600303 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_3:25600285-25600304 Msa1283840:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 25599040 25600932 25599040 ID=Msa1283840;Name=Msa1283840
chr8_3 mRNA 25599040 25600932 25599040 ID=Msa1283840-mRNA-1;Parent=Msa1283840;Name=Msa1283840-mRNA-1;_AED=0.23;_eAED=0.23;_QI=55|1|1|1|1|1|2|347|157
chr8_3 exon 25599040 25599673 25599040 ID=Msa1283840-mRNA-1:exon:9016;Parent=Msa1283840-mRNA-1
chr8_3 exon 25600691 25600932 25600691 ID=Msa1283840-mRNA-1:exon:9015;Parent=Msa1283840-mRNA-1
chr8_3 five_prime_UTR 25600878 25600932 25600878 ID=Msa1283840-mRNA-1:five_prime_utr;Parent=Msa1283840-mRNA-1
chr8_3 CDS 25600691 25600877 25600691 ID=Msa1283840-mRNA-1:cds;Parent=Msa1283840-mRNA-1
chr8_3 CDS 25599387 25599673 25599387 ID=Msa1283840-mRNA-1:cds;Parent=Msa1283840-mRNA-1
chr8_3 three_prime_UTR 25599040 25599386 25599040 ID=Msa1283840-mRNA-1:three_prime_utr;Parent=Msa1283840-mRNA-1
Gene Sequence

>Msa1283840

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACACTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1283840

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*