Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350840 | AES98664.2 | 57.759 | 116 | 30 | 2 | 5 | 116 | 943 | 1043 | 5.39e-31 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350840 | G7JZJ5 | 57.759 | 116 | 30 | 2 | 5 | 116 | 943 | 1043 | 2.57e-31 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa1350840 | 0.802494 | 5.461704e-49 | -8.615850e-47 |
| Msa0048000 | Msa1350840 | 0.812376 | 4.373243e-51 | -8.615850e-47 |
| Msa0050940 | Msa1350840 | 0.811093 | 8.317855e-51 | -8.615850e-47 |
| Msa0054640 | Msa1350840 | 0.805822 | 1.108746e-49 | -8.615850e-47 |
| Msa0069260 | Msa1350840 | 0.800163 | 1.639295e-48 | -8.615850e-47 |
| Msa0069310 | Msa1350840 | 0.820269 | 7.498828e-53 | -8.615850e-47 |
| Msa0102750 | Msa1350840 | 0.801506 | 8.720401e-49 | -8.615850e-47 |
| Msa0105420 | Msa1350840 | 0.825072 | 5.721872e-54 | -8.615850e-47 |
| Msa1350840 | Msa1357530 | 0.825606 | 4.277774e-54 | -8.615850e-47 |
| Msa1350840 | Msa1358870 | -0.816681 | 4.878269e-52 | -8.615850e-47 |
| Msa1350840 | Msa1365040 | -0.864040 | 1.618865e-64 | -8.615850e-47 |
| Msa1350840 | Msa1373950 | 0.815173 | 1.058562e-51 | -8.615850e-47 |
| Msa1350840 | Msa1376890 | 0.849976 | 2.287446e-60 | -8.615850e-47 |
| Msa1350840 | Msa1378760 | 0.811143 | 8.112992e-51 | -8.615850e-47 |
| Msa1350840 | Msa1384350 | 0.821181 | 4.628900e-53 | -8.615850e-47 |
| Msa1350840 | Msa1393410 | 0.802720 | 4.907140e-49 | -8.615850e-47 |
| Msa1350840 | Msa1401530 | 0.821189 | 4.609134e-53 | -8.615850e-47 |
| Msa1350840 | Msa1404540 | 0.819575 | 1.080558e-52 | -8.615850e-47 |
| Msa1350840 | Msa1408790 | 0.816019 | 6.862414e-52 | -8.615850e-47 |
| Msa1350840 | Msa1414740 | 0.809143 | 2.188475e-50 | -8.615850e-47 |
| Msa1350840 | Msa1427760 | 0.845381 | 4.209280e-59 | -8.615850e-47 |
| Msa1350840 | Msa1431060 | 0.808898 | 2.470323e-50 | -8.615850e-47 |
| Msa1350840 | Msa1436040 | 0.809686 | 1.673727e-50 | -8.615850e-47 |
| Msa1350840 | Msa1456810 | 0.816467 | 5.447939e-52 | -8.615850e-47 |
| Msa1350840 | Msa1457670 | -0.860357 | 2.185713e-63 | -8.615850e-47 |
| Msa1350840 | Msa1465900 | 0.807430 | 5.073550e-50 | -8.615850e-47 |
| Msa0610590 | Msa1350840 | 0.820681 | 6.031570e-53 | -8.615850e-47 |
| Msa0624730 | Msa1350840 | 0.814634 | 1.393865e-51 | -8.615850e-47 |
| Msa0638320 | Msa1350840 | 0.806844 | 6.752033e-50 | -8.615850e-47 |
| Msa0651190 | Msa1350840 | 0.817506 | 3.183208e-52 | -8.615850e-47 |
| Msa0653510 | Msa1350840 | 0.837753 | 4.315896e-57 | -8.615850e-47 |
| Msa0657670 | Msa1350840 | 0.819564 | 1.087013e-52 | -8.615850e-47 |
| Msa0658570 | Msa1350840 | 0.844253 | 8.475291e-59 | -8.615850e-47 |
| Msa0674220 | Msa1350840 | 0.812361 | 4.406608e-51 | -8.615850e-47 |
| Msa0703490 | Msa1350840 | 0.856236 | 3.687808e-62 | -8.615850e-47 |
| Msa0715310 | Msa1350840 | 0.804177 | 2.448330e-49 | -8.615850e-47 |
| Msa0722930 | Msa1350840 | 0.804278 | 2.332611e-49 | -8.615850e-47 |
| Msa0723140 | Msa1350840 | 0.819162 | 1.342145e-52 | -8.615850e-47 |
| Msa0731710 | Msa1350840 | 0.814594 | 1.422729e-51 | -8.615850e-47 |
| Msa0734510 | Msa1350840 | 0.864432 | 1.221158e-64 | -8.615850e-47 |
| Msa0743260 | Msa1350840 | 0.803546 | 3.310188e-49 | -8.615850e-47 |
| Msa0754720 | Msa1350840 | -0.810609 | 1.058550e-50 | -8.615850e-47 |
| Msa0756630 | Msa1350840 | -0.844746 | 6.246932e-59 | -8.615850e-47 |
| Msa0776030 | Msa1350840 | 0.884063 | 2.640489e-71 | -8.615850e-47 |
| Msa0791070 | Msa1350840 | 0.814274 | 1.674496e-51 | -8.615850e-47 |
| Msa0792510 | Msa1350840 | 0.811814 | 5.798465e-51 | -8.615850e-47 |
| Msa0802470 | Msa1350840 | -0.800319 | 1.523626e-48 | -8.615850e-47 |
| Msa0813420 | Msa1350840 | 0.849591 | 2.930352e-60 | -8.615850e-47 |
| Msa0839330 | Msa1350840 | 0.816760 | 4.684168e-52 | -8.615850e-47 |
| Msa0145670 | Msa1350840 | 0.818900 | 1.539811e-52 | -8.615850e-47 |
| Msa0165430 | Msa1350840 | 0.807317 | 5.361242e-50 | -8.615850e-47 |
| Msa0179580 | Msa1350840 | 0.813184 | 2.910986e-51 | -8.615850e-47 |
| Msa0188630 | Msa1350840 | 0.818419 | 1.979490e-52 | -8.615850e-47 |
| Msa0195770 | Msa1350840 | 0.808702 | 2.719535e-50 | -8.615850e-47 |
| Msa0208630 | Msa1350840 | 0.807368 | 5.230675e-50 | -8.615850e-47 |
| Msa0217400 | Msa1350840 | 0.841679 | 4.105978e-58 | -8.615850e-47 |
| Msa0220580 | Msa1350840 | 0.810168 | 1.317816e-50 | -8.615850e-47 |
| Msa0230770 | Msa1350840 | 0.811134 | 8.147575e-51 | -8.615850e-47 |
| Msa1228210 | Msa1350840 | 0.827787 | 1.289783e-54 | -8.615850e-47 |
| Msa1242220 | Msa1350840 | 0.815517 | 8.877104e-52 | -8.615850e-47 |
| Msa1264020 | Msa1350840 | 0.803272 | 3.772961e-49 | -8.615850e-47 |
| Msa1267060 | Msa1350840 | 0.814922 | 1.203893e-51 | -8.615850e-47 |
| Msa1270610 | Msa1350840 | 0.814360 | 1.603093e-51 | -8.615850e-47 |
| Msa1271280 | Msa1350840 | 0.861201 | 1.211960e-63 | -8.615850e-47 |
| Msa1271300 | Msa1350840 | 0.847644 | 1.014848e-59 | -8.615850e-47 |
| Msa1278840 | Msa1350840 | 0.811245 | 7.708898e-51 | -8.615850e-47 |
| Msa1283860 | Msa1350840 | 0.809447 | 1.883308e-50 | -8.615850e-47 |
| Msa1318240 | Msa1350840 | 0.839776 | 1.294298e-57 | -8.615850e-47 |
| Msa1322860 | Msa1350840 | 0.815026 | 1.141326e-51 | -8.615850e-47 |
| Msa1322890 | Msa1350840 | 0.838858 | 2.239668e-57 | -8.615850e-47 |
| Msa1327050 | Msa1350840 | 0.804404 | 2.195470e-49 | -8.615850e-47 |
| Msa1335770 | Msa1350840 | 0.804424 | 2.174554e-49 | -8.615850e-47 |
| Msa1340650 | Msa1350840 | 0.832343 | 9.981744e-56 | -8.615850e-47 |
| Msa0371540 | Msa1350840 | 0.803927 | 2.759750e-49 | -8.615850e-47 |
| Msa0371610 | Msa1350840 | 0.803422 | 3.513298e-49 | -8.615850e-47 |
| Msa0373160 | Msa1350840 | 0.802440 | 5.603868e-49 | -8.615850e-47 |
| Msa0373930 | Msa1350840 | 0.817320 | 3.506220e-52 | -8.615850e-47 |
| Msa0414950 | Msa1350840 | -0.811754 | 5.976414e-51 | -8.615850e-47 |
| Msa0419970 | Msa1350840 | 0.800970 | 1.122716e-48 | -8.615850e-47 |
| Msa0437710 | Msa1350840 | 0.804797 | 1.817915e-49 | -8.615850e-47 |
| Msa0448550 | Msa1350840 | -0.819141 | 1.357290e-52 | -8.615850e-47 |
| Msa0459770 | Msa1350840 | -0.823169 | 1.601052e-53 | -8.615850e-47 |
| Msa0464900 | Msa1350840 | 0.809413 | 1.915935e-50 | -8.615850e-47 |
| Msa0465930 | Msa1350840 | 0.813866 | 2.060628e-51 | -8.615850e-47 |
| Msa0465970 | Msa1350840 | 0.821393 | 4.136110e-53 | -8.615850e-47 |
| Msa0466060 | Msa1350840 | 0.803291 | 3.738871e-49 | -8.615850e-47 |
| Msa0473240 | Msa1350840 | 0.837474 | 5.088802e-57 | -8.615850e-47 |
| Msa0981010 | Msa1350840 | 0.801595 | 8.361450e-49 | -8.615850e-47 |
| Msa1008490 | Msa1350840 | 0.821578 | 3.748033e-53 | -8.615850e-47 |
| Msa1009000 | Msa1350840 | 0.832871 | 7.379720e-56 | -8.615850e-47 |
| Msa1036390 | Msa1350840 | 0.834890 | 2.307510e-56 | -8.615850e-47 |
| Msa1040120 | Msa1350840 | 0.837734 | 4.363420e-57 | -8.615850e-47 |
| Msa1041730 | Msa1350840 | 0.823871 | 1.096532e-53 | -8.615850e-47 |
| Msa1045200 | Msa1350840 | 0.820313 | 7.325252e-53 | -8.615850e-47 |
| Msa1075220 | Msa1350840 | -0.819274 | 1.265541e-52 | -8.615850e-47 |
| Msa1076680 | Msa1350840 | 0.830321 | 3.137025e-55 | -8.615850e-47 |
| Msa1082500 | Msa1350840 | 0.800733 | 1.254841e-48 | -8.615850e-47 |
| Msa1083410 | Msa1350840 | 0.806034 | 1.000827e-49 | -8.615850e-47 |
| Msa1085300 | Msa1350840 | 0.803583 | 3.252588e-49 | -8.615850e-47 |
| Msa1089040 | Msa1350840 | 0.814400 | 1.570542e-51 | -8.615850e-47 |
| Msa1097800 | Msa1350840 | 0.806074 | 9.813652e-50 | -8.615850e-47 |
| Msa1098560 | Msa1350840 | 0.843003 | 1.830232e-58 | -8.615850e-47 |
| Msa0243710 | Msa1350840 | 0.802008 | 6.876900e-49 | -8.615850e-47 |
| Msa0253370 | Msa1350840 | 0.808808 | 2.582370e-50 | -8.615850e-47 |
| Msa0257250 | Msa1350840 | 0.831959 | 1.241560e-55 | -8.615850e-47 |
| Msa0258760 | Msa1350840 | 0.833821 | 4.279149e-56 | -8.615850e-47 |
| Msa0260810 | Msa1350840 | 0.817522 | 3.156283e-52 | -8.615850e-47 |
| Msa0265380 | Msa1350840 | 0.848762 | 4.984067e-60 | -8.615850e-47 |
| Msa0266000 | Msa1350840 | -0.825238 | 5.227376e-54 | -8.615850e-47 |
| Msa0269360 | Msa1350840 | 0.818671 | 1.735309e-52 | -8.615850e-47 |
| Msa0270270 | Msa1350840 | 0.836212 | 1.068388e-56 | -8.615850e-47 |
| Msa0275670 | Msa1350840 | 0.822242 | 2.630974e-53 | -8.615850e-47 |
| Msa0282250 | Msa1350840 | 0.813503 | 2.476120e-51 | -8.615850e-47 |
| Msa0296560 | Msa1350840 | 0.830065 | 3.622881e-55 | -8.615850e-47 |
| Msa0296760 | Msa1350840 | 0.818666 | 1.740085e-52 | -8.615850e-47 |
| Msa0303360 | Msa1350840 | 0.826661 | 2.400002e-54 | -8.615850e-47 |
| Msa0304990 | Msa1350840 | 0.815885 | 7.349743e-52 | -8.615850e-47 |
| Msa0311860 | Msa1350840 | 0.804671 | 1.931013e-49 | -8.615850e-47 |
| Msa0323620 | Msa1350840 | 0.803287 | 3.747055e-49 | -8.615850e-47 |
| Msa0330400 | Msa1350840 | 0.807854 | 4.124391e-50 | -8.615850e-47 |
| Msa0331920 | Msa1350840 | 0.809275 | 2.050960e-50 | -8.615850e-47 |
| Msa0333720 | Msa1350840 | -0.845600 | 3.671422e-59 | -8.615850e-47 |
| Msa0335040 | Msa1350840 | 0.829187 | 5.924347e-55 | -8.615850e-47 |
| Msa0356550 | Msa1350840 | -0.810828 | 9.491141e-51 | -8.615850e-47 |
| Msa0356890 | Msa1350840 | -0.815155 | 1.068747e-51 | -8.615850e-47 |
| Msa0358330 | Msa1350840 | 0.800571 | 1.353825e-48 | -8.615850e-47 |
| Msa1116130 | Msa1350840 | -0.832406 | 9.629638e-56 | -8.615850e-47 |
| Msa1125080 | Msa1350840 | 0.808647 | 2.794698e-50 | -8.615850e-47 |
| Msa1128160 | Msa1350840 | 0.836751 | 7.789525e-57 | -8.615850e-47 |
| Msa1139000 | Msa1350840 | -0.820016 | 8.568712e-53 | -8.615850e-47 |
| Msa1165360 | Msa1350840 | 0.836106 | 1.136582e-56 | -8.615850e-47 |
| Msa1167220 | Msa1350840 | 0.821383 | 4.157995e-53 | -8.615850e-47 |
| Msa1207690 | Msa1350840 | 0.806210 | 9.186724e-50 | -8.615850e-47 |
| Msa1212840 | Msa1350840 | 0.802511 | 5.418957e-49 | -8.615850e-47 |
| Msa1216690 | Msa1350840 | 0.807864 | 4.104879e-50 | -8.615850e-47 |
| Msa1221200 | Msa1350840 | -0.809820 | 1.566672e-50 | -8.615850e-47 |
| Msa1222970 | Msa1350840 | 0.810956 | 8.904627e-51 | -8.615850e-47 |
| Msa0488400 | Msa1350840 | 0.814236 | 1.706988e-51 | -8.615850e-47 |
| Msa0492880 | Msa1350840 | 0.800307 | 1.532444e-48 | -8.615850e-47 |
| Msa0497770 | Msa1350840 | -0.811942 | 5.439801e-51 | -8.615850e-47 |
| Msa0509970 | Msa1350840 | 0.805815 | 1.112455e-49 | -8.615850e-47 |
| Msa0510370 | Msa1350840 | 0.805016 | 1.636131e-49 | -8.615850e-47 |
| Msa0517330 | Msa1350840 | 0.808948 | 2.409524e-50 | -8.615850e-47 |
| Msa0517340 | Msa1350840 | 0.812776 | 3.576544e-51 | -8.615850e-47 |
| Msa0517490 | Msa1350840 | 0.801440 | 8.995685e-49 | -8.615850e-47 |
| Msa0533070 | Msa1350840 | 0.811951 | 5.413885e-51 | -8.615850e-47 |
| Msa0538700 | Msa1350840 | 0.819342 | 1.221185e-52 | -8.615850e-47 |
| Msa0540320 | Msa1350840 | 0.817156 | 3.816530e-52 | -8.615850e-47 |
| Msa0557680 | Msa1350840 | 0.822739 | 2.016452e-53 | -8.615850e-47 |
| Msa0558690 | Msa1350840 | 0.808166 | 3.540013e-50 | -8.615850e-47 |
| Msa0566500 | Msa1350840 | -0.810715 | 1.004245e-50 | -8.615850e-47 |
| Msa0567020 | Msa1350840 | 0.841732 | 3.975475e-58 | -8.615850e-47 |
| Msa0578970 | Msa1350840 | 0.819914 | 9.041749e-53 | -8.615850e-47 |
| Msa0582110 | Msa1350840 | 0.822548 | 2.233756e-53 | -8.615850e-47 |
| Msa0587690 | Msa1350840 | 0.805832 | 1.103388e-49 | -8.615850e-47 |
| Msa0596100 | Msa1350840 | 0.808600 | 2.859489e-50 | -8.615850e-47 |
| Msa0843280 | Msa1350840 | 0.811004 | 8.693466e-51 | -8.615850e-47 |
| Msa0844240 | Msa1350840 | 0.800070 | 1.712558e-48 | -8.615850e-47 |
| Msa0891040 | Msa1350840 | 0.804081 | 2.562837e-49 | -8.615850e-47 |
| Msa0896210 | Msa1350840 | 0.812816 | 3.504885e-51 | -8.615850e-47 |
| Msa0908170 | Msa1350840 | 0.822102 | 2.834548e-53 | -8.615850e-47 |
| Msa0910980 | Msa1350840 | -0.810485 | 1.126286e-50 | -8.615850e-47 |
| Msa0951720 | Msa1350840 | 0.811043 | 8.526999e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350840 | MtrunA17_Chr1g0146881 | 44.800 | 125 | 38 | 1 | 3 | 96 | 51 | 175 | 1.91e-25 | 100 |
| Msa1350840 | MtrunA17_Chr5g0430631 | 72.917 | 48 | 5 | 1 | 111 | 158 | 13 | 52 | 7.49e-17 | 70.9 |
| Msa1350840 | MtrunA17_Chr5g0430961 | 48.052 | 77 | 28 | 3 | 43 | 115 | 19 | 87 | 2.90e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCATCCTCTTGCTTTC+AGG | 0.176242 | tig0011913:+72492 | None:intergenic |
| GTACTAATGTTGCTGAAATA+AGG | 0.197501 | tig0011913:-71169 | Msa1350840:three_prime_UTR |
| CCATTGTTCACTGCCTTCTT+TGG | 0.224233 | tig0011913:+71304 | None:intergenic |
| TTAATCAAATTATTGCCTTA+TGG | 0.257888 | tig0011913:-71000 | Msa1350840:three_prime_UTR |
| ATGATGAAGACGGCTTCTTT+TGG | 0.314207 | tig0011913:-73838 | Msa1350840:CDS |
| CGACAAACAACGGGATTAAC+CGG | 0.350175 | tig0011913:-73875 | Msa1350840:CDS |
| GCCAAGGAGTGAACTCTATC+AGG | 0.356417 | tig0011913:+73300 | None:intergenic |
| AAGAAGCCGTCTTCATCATT+AGG | 0.383282 | tig0011913:+73842 | None:intergenic |
| TTTGTGTCGGACAATGTTAA+TGG | 0.398856 | tig0011913:-72538 | Msa1350840:CDS |
| TACTAATGTTGCTGAAATAA+GGG | 0.414247 | tig0011913:-71168 | Msa1350840:three_prime_UTR |
| TTATTCGTTGGAATTAAGTT+CGG | 0.414784 | tig0011913:+71265 | None:intergenic |
| ATCATTAGGTACGTCTGTTC+CGG | 0.423353 | tig0011913:+73856 | None:intergenic |
| TTGGCTTTGCTAAACGCAAC+GGG | 0.440138 | tig0011913:-73282 | Msa1350840:CDS |
| TTTCAACATCTGTTATTCGT+TGG | 0.452009 | tig0011913:+71253 | None:intergenic |
| TCCTGATAGAGTTCACTCCT+TGG | 0.452816 | tig0011913:-73301 | Msa1350840:CDS |
| GGGTGGGGTCGACAAACAAC+GGG | 0.471193 | tig0011913:-73884 | Msa1350840:CDS |
| AGGACAATCTCCTAAGGCTT+AGG | 0.474201 | tig0011913:+71212 | None:intergenic |
| TATAGCTTCTCCTAAGCCTT+AGG | 0.477644 | tig0011913:-71222 | Msa1350840:three_prime_UTR |
| TGTCCGACACAAACATGGTT+GGG | 0.482898 | tig0011913:+72548 | None:intergenic |
| GATCATTGGGGCGTGTGGGT+CGG | 0.485426 | tig0011913:-73764 | Msa1350840:CDS |
| TGCCTTTGACACACAAGGGT+GGG | 0.502809 | tig0011913:-73900 | Msa1350840:CDS |
| GCCTTTGACACACAAGGGTG+GGG | 0.507799 | tig0011913:-73899 | Msa1350840:CDS |
| GCAAGGGATTGAATGTACTT+TGG | 0.513385 | tig0011913:-71343 | Msa1350840:CDS |
| TGAACCACAGAAACTATAAG+AGG | 0.523659 | tig0011913:-72467 | Msa1350840:intron |
| ATTAAGTTCGGCTCATGTGT+TGG | 0.524363 | tig0011913:+71277 | None:intergenic |
| ATCACCTCTTATAGTTTCTG+TGG | 0.529669 | tig0011913:+72463 | None:intergenic |
| ACCCCACCCTTGTGTGTCAA+AGG | 0.547992 | tig0011913:+73898 | None:intergenic |
| CTTGGCTTTGCTAAACGCAA+CGG | 0.553494 | tig0011913:-73283 | Msa1350840:CDS |
| TTGTCCGACACAAACATGGT+TGG | 0.556533 | tig0011913:+72547 | None:intergenic |
| AGCTTGTAAAATAGCAGCAA+TGG | 0.557695 | tig0011913:-73325 | Msa1350840:CDS |
| TAGTAGATATTGTACAATCA+AGG | 0.559319 | tig0011913:+71192 | None:intergenic |
| CAATCAAGGACAATCTCCTA+AGG | 0.561772 | tig0011913:+71206 | None:intergenic |
| AGGGTGGGGTCGACAAACAA+CGG | 0.572450 | tig0011913:-73885 | Msa1350840:CDS |
| GCAATCCTCGATACCACCAC+TGG | 0.574989 | tig0011913:+73793 | None:intergenic |
| AGGATTGCCTTTGACACACA+AGG | 0.578167 | tig0011913:-73905 | Msa1350840:CDS |
| AACATTGTCCGACACAAACA+TGG | 0.587239 | tig0011913:+72543 | None:intergenic |
| TGTTTGTGTCAGATATGTTG+TGG | 0.598784 | tig0011913:-72584 | Msa1350840:intron |
| GACATTGTTTGGAACAACCA+AGG | 0.606311 | tig0011913:+71070 | None:intergenic |
| CTTGCTTTCAGGAAAAGCAG+TGG | 0.613067 | tig0011913:+72503 | None:intergenic |
| CCAAAGAAGGCAGTGAACAA+TGG | 0.613591 | tig0011913:-71304 | Msa1350840:three_prime_UTR |
| TTGCCTTTGACACACAAGGG+TGG | 0.618428 | tig0011913:-73901 | Msa1350840:CDS |
| CAAACTTAGTTCAGGACGAG+TGG | 0.621875 | tig0011913:-73105 | Msa1350840:intron |
| CGTTGCGTTTAGCAAAGCCA+AGG | 0.625437 | tig0011913:+73284 | None:intergenic |
| GCTTTGCTAAACGCAACGGG+TGG | 0.631397 | tig0011913:-73279 | Msa1350840:CDS |
| TGAGTCCAGTGGTGGTATCG+AGG | 0.631616 | tig0011913:-73798 | Msa1350840:CDS |
| AGTCCCAACCATGTTTGTGT+CGG | 0.643631 | tig0011913:-72551 | Msa1350840:CDS |
| GGTGACAATGAGTCCAGTGG+TGG | 0.656389 | tig0011913:-73806 | Msa1350840:CDS |
| GACGTACCTAATGATGAAGA+CGG | 0.660600 | tig0011913:-73848 | Msa1350840:CDS |
| GGATTGCCTTTGACACACAA+GGG | 0.671237 | tig0011913:-73904 | Msa1350840:CDS |
| GGAGGTGACAATGAGTCCAG+TGG | 0.677714 | tig0011913:-73809 | Msa1350840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTGATTTATTTTTT+CGG | - | tig0011913:71644-71663 | Msa1350840:intron | 10.0% |
| !! | ATTTAAATTAGAAAGTAATA+TGG | + | tig0011913:72023-72042 | None:intergenic | 10.0% |
| !! | ATATATAAAGTTAATACTAT+AGG | + | tig0011913:72858-72877 | None:intergenic | 10.0% |
| !! | TAAATATATTATACATGAAA+GGG | + | tig0011913:73029-73048 | None:intergenic | 10.0% |
| !! | ATAAATATATTATACATGAA+AGG | + | tig0011913:73030-73049 | None:intergenic | 10.0% |
| !!! | CAATACATTTTTTATTTAAA+AGG | - | tig0011913:73804-73823 | Msa1350840:CDS | 10.0% |
| !!! | AGTTTTTGAATGTAATTATA+TGG | - | tig0011913:71228-71247 | Msa1350840:three_prime_UTR | 15.0% |
| !!! | GTTTTTGAATGTAATTATAT+GGG | - | tig0011913:71229-71248 | Msa1350840:three_prime_UTR | 15.0% |
| !! | AATGTTCAAAGAATTATAAA+AGG | + | tig0011913:71630-71649 | None:intergenic | 15.0% |
| !!! | AGATTTTTAAAGAATATTGA+CGG | - | tig0011913:71889-71908 | Msa1350840:intron | 15.0% |
| !! | TAATTTAAATTTCTATATGC+AGG | - | tig0011913:72033-72052 | Msa1350840:intron | 15.0% |
| !! | TAATATATTTATGAAAGAGT+CGG | - | tig0011913:73038-73057 | Msa1350840:intron | 15.0% |
| !!! | GATAGAATTTTAAATATGTT+TGG | + | tig0011913:73404-73423 | None:intergenic | 15.0% |
| !!! | TATTTAAAATTCTATCCTTA+TGG | - | tig0011913:73408-73427 | Msa1350840:intron | 15.0% |
| !!! | TAAAGGAATTTAATGTATTT+TGG | - | tig0011913:73474-73493 | Msa1350840:intron | 15.0% |
| !! | ATAATTTACAAAGAGTGAAA+TGG | - | tig0011913:71272-71291 | Msa1350840:three_prime_UTR | 20.0% |
| !! | TGAAATGGAAATTTGAATAT+TGG | - | tig0011913:71287-71306 | Msa1350840:three_prime_UTR | 20.0% |
| !!! | ATGCAATTACTTTATGTTTT+TGG | - | tig0011913:71350-71369 | Msa1350840:intron | 20.0% |
| !!! | TGCAATTACTTTATGTTTTT+GGG | - | tig0011913:71351-71370 | Msa1350840:intron | 20.0% |
| !! | TGATTTAGTTAAAATTCAGA+CGG | - | tig0011913:71420-71439 | Msa1350840:intron | 20.0% |
| !! | AAGTTTGTAATTAAAAAGTG+TGG | + | tig0011913:71734-71753 | None:intergenic | 20.0% |
| !! | TTTAATTACAAACTTAGTTC+AGG | - | tig0011913:71739-71758 | Msa1350840:intron | 20.0% |
| !! | GTAAAATTATTGTGAGAATT+GGG | - | tig0011913:72096-72115 | Msa1350840:intron | 20.0% |
| !!! | CACTTTGTTATCAAATAAAA+TGG | + | tig0011913:72444-72463 | None:intergenic | 20.0% |
| !!! | TCATTCCAATAAACAAATTT+TGG | + | tig0011913:72684-72703 | None:intergenic | 20.0% |
| !!! | TAAAATAAATTAGTTTGACG+AGG | + | tig0011913:73252-73271 | None:intergenic | 20.0% |
| !! | AATAGTATATTGTAGATGTA+TGG | - | tig0011913:73441-73460 | Msa1350840:intron | 20.0% |
| !!! | AAAAATGTATTGACATTGTT+TGG | + | tig0011913:73796-73815 | None:intergenic | 20.0% |
| !! | TTAATCAAATTATTGCCTTA+TGG | - | tig0011913:73852-73871 | Msa1350840:CDS | 20.0% |
| ! | TTGAATGTAATTATATGGGT+TGG | - | tig0011913:71233-71252 | Msa1350840:three_prime_UTR | 25.0% |
| ! | AATATTGGTGAATGATTGTT+GGG | - | tig0011913:71302-71321 | Msa1350840:three_prime_UTR | 25.0% |
| ! | TTAACTACATTAATGATTGC+TGG | - | tig0011913:71708-71727 | Msa1350840:intron | 25.0% |
| ! | GTTGAGAATTTATCTTTCTA+TGG | - | tig0011913:71804-71823 | Msa1350840:intron | 25.0% |
| ! | GGTAAAATTATTGTGAGAAT+TGG | - | tig0011913:72095-72114 | Msa1350840:intron | 25.0% |
| ! | ATGCAACAAATCAAAATTCT+TGG | - | tig0011913:72151-72170 | Msa1350840:intron | 25.0% |
| ! | TGCTAATCTACTAAAATACA+TGG | + | tig0011913:72486-72505 | None:intergenic | 25.0% |
| !! | ACTTATTTCTCTTTGAACTA+TGG | - | tig0011913:72556-72575 | Msa1350840:CDS | 25.0% |
| !! | GGTTTCCAAAATTTGTTTAT+TGG | - | tig0011913:72676-72695 | Msa1350840:intron | 25.0% |
| !!! | ATTTTTGTCTGAGACAAAAT+CGG | - | tig0011913:72744-72763 | Msa1350840:intron | 25.0% |
| ! | TAACGATAATCTGACAAATT+AGG | + | tig0011913:72783-72802 | None:intergenic | 25.0% |
| ! | TTATGGTTAATTTCAAGGTA+AGG | - | tig0011913:73182-73201 | Msa1350840:intron | 25.0% |
| ! | ATACATTACGAAACTTTAGT+CGG | - | tig0011913:73274-73293 | Msa1350840:CDS | 25.0% |
| !! | ATGTTTGGTGAAAAAATGAT+CGG | + | tig0011913:73389-73408 | None:intergenic | 25.0% |
| !!! | CTATTTTTTTCTTTGCCATA+AGG | + | tig0011913:73426-73445 | None:intergenic | 25.0% |
| ! | TGTATGGTAAGATTTGATAA+AGG | - | tig0011913:73457-73476 | Msa1350840:intron | 25.0% |
| ! | TTATTCGTTGGAATTAAGTT+CGG | + | tig0011913:73590-73609 | None:intergenic | 25.0% |
| ! | TAGTAGATATTGTACAATCA+AGG | + | tig0011913:73663-73682 | None:intergenic | 25.0% |
| ! | TACTAATGTTGCTGAAATAA+GGG | - | tig0011913:73684-73703 | Msa1350840:intron | 25.0% |
| GAATATTGGTGAATGATTGT+TGG | - | tig0011913:71301-71320 | Msa1350840:three_prime_UTR | 30.0% | |
| CTCAACCTAATCAAATCTTA+GGG | + | tig0011913:71450-71469 | None:intergenic | 30.0% | |
| ACTCAACCTAATCAAATCTT+AGG | + | tig0011913:71451-71470 | None:intergenic | 30.0% | |
| TATTGTTTGCCTATTGAAAC+AGG | - | tig0011913:71495-71514 | Msa1350840:intron | 30.0% | |
| ATCATAGATCCTGTTTCAAT+AGG | + | tig0011913:71507-71526 | None:intergenic | 30.0% | |
| ! | AGATTTTCAATGTTTTCCAG+AGG | - | tig0011913:71596-71615 | Msa1350840:intron | 30.0% |
| ! | ATAAAAGGTACATATACCTC+TGG | + | tig0011913:71615-71634 | None:intergenic | 30.0% |
| CTCAACTAAATTTGTCCTAA+AGG | + | tig0011913:71790-71809 | None:intergenic | 30.0% | |
| TATTTCTCAAGACAGTTATC+TGG | - | tig0011913:71951-71970 | Msa1350840:intron | 30.0% | |
| ! | CAGCTTCAATTCTAAAGATA+TGG | + | tig0011913:72122-72141 | None:intergenic | 30.0% |
| TGTGTATAAAGCTCTTCATT+AGG | - | tig0011913:72192-72211 | Msa1350840:intron | 30.0% | |
| TATAAAGCTCTTCATTAGGA+AGG | - | tig0011913:72196-72215 | Msa1350840:intron | 30.0% | |
| ! | ACTATAAGAGGTGATGATTT+TGG | - | tig0011913:72397-72416 | Msa1350840:intron | 30.0% |
| !! | TTTTGGAAACCACGAATATT+GGG | + | tig0011913:72667-72686 | None:intergenic | 30.0% |
| !! | ATTTTGGAAACCACGAATAT+TGG | + | tig0011913:72668-72687 | None:intergenic | 30.0% |
| CATATCAATACCAACATCAA+CGG | + | tig0011913:72820-72839 | None:intergenic | 30.0% | |
| ATGTATCCATGAAAATATGC+AGG | - | tig0011913:72978-72997 | Msa1350840:intron | 30.0% | |
| ! | AAGGGCTATTTCATAAATGA+AGG | + | tig0011913:73011-73030 | None:intergenic | 30.0% |
| CGACGTTGTTAAACAATATT+AGG | - | tig0011913:73104-73123 | Msa1350840:intron | 30.0% | |
| !! | TTAGTCGGCTTTCTTTTTAT+TGG | - | tig0011913:73289-73308 | Msa1350840:CDS | 30.0% |
| !!! | TGTATTTTGGTCATACATAC+AGG | - | tig0011913:73487-73506 | Msa1350840:intron | 30.0% |
| !! | TCTTTGGAGATTGATTTTTC+AGG | + | tig0011913:73535-73554 | None:intergenic | 30.0% |
| GAAAAATCAATCTCCAAAGA+AGG | - | tig0011913:73535-73554 | Msa1350840:intron | 30.0% | |
| TTTCAACATCTGTTATTCGT+TGG | + | tig0011913:73602-73621 | None:intergenic | 30.0% | |
| GTACTAATGTTGCTGAAATA+AGG | - | tig0011913:73683-73702 | Msa1350840:intron | 30.0% | |
| AAAAACTACACTAGAGGAAT+GGG | + | tig0011913:73731-73750 | None:intergenic | 30.0% | |
| AAAAAACTACACTAGAGGAA+TGG | + | tig0011913:73732-73751 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTAGCTTCCATA+AGG | + | tig0011913:73870-73889 | None:intergenic | 30.0% |
| !! | AGGATTGCGATTTTGATCAT+TGG | - | tig0011913:71074-71093 | Msa1350840:three_prime_UTR | 35.0% |
| !! | GGATTGCGATTTTGATCATT+GGG | - | tig0011913:71075-71094 | Msa1350840:three_prime_UTR | 35.0% |
| !! | GATTGCGATTTTGATCATTG+GGG | - | tig0011913:71076-71095 | Msa1350840:three_prime_UTR | 35.0% |
| TCTATGCACAATAGAAAGTC+TGG | - | tig0011913:71114-71133 | Msa1350840:three_prime_UTR | 35.0% | |
| AATAGAAAGTCTGGTCATCA+AGG | - | tig0011913:71123-71142 | Msa1350840:three_prime_UTR | 35.0% | |
| GTTTGCCCTAAGATTTGATT+AGG | - | tig0011913:71442-71461 | Msa1350840:intron | 35.0% | |
| AGCTTGTAAAATAGCAGCAA+TGG | - | tig0011913:71527-71546 | Msa1350840:intron | 35.0% | |
| !! | CTGATTTTAGGTGATCCTTT+AGG | - | tig0011913:71772-71791 | Msa1350840:intron | 35.0% |
| TTGAGAAATACTTCACAGGT+TGG | + | tig0011913:71941-71960 | None:intergenic | 35.0% | |
| TGTCTTGAGAAATACTTCAC+AGG | + | tig0011913:71945-71964 | None:intergenic | 35.0% | |
| TATGGTGATAAGAAGATGCA+GGG | + | tig0011913:72005-72024 | None:intergenic | 35.0% | |
| ATATGGTGATAAGAAGATGC+AGG | + | tig0011913:72006-72025 | None:intergenic | 35.0% | |
| ! | TTGCTTTCTCAGTTTTTGTG+TGG | - | tig0011913:72062-72081 | Msa1350840:intron | 35.0% |
| ! | GTTTTTGTGTGGAATGTCTA+CGG | - | tig0011913:72073-72092 | Msa1350840:intron | 35.0% |
| ! | TTTTTGTGTGGAATGTCTAC+GGG | - | tig0011913:72074-72093 | Msa1350840:intron | 35.0% |
| TGTTTGTGTCAGATATGTTG+TGG | - | tig0011913:72268-72287 | Msa1350840:intron | 35.0% | |
| TTTGTGTCGGACAATGTTAA+TGG | - | tig0011913:72314-72333 | Msa1350840:intron | 35.0% | |
| TGAACCACAGAAACTATAAG+AGG | - | tig0011913:72385-72404 | Msa1350840:intron | 35.0% | |
| ATCACCTCTTATAGTTTCTG+TGG | + | tig0011913:72392-72411 | None:intergenic | 35.0% | |
| CATCTCTTGTGAAACTGAAT+AGG | - | tig0011913:72529-72548 | Msa1350840:CDS | 35.0% | |
| TATGGATATTGTTGAATGCG+AGG | - | tig0011913:72574-72593 | Msa1350840:CDS | 35.0% | |
| CCACGAATATTCAAAAACTC+AGG | + | tig0011913:72641-72660 | None:intergenic | 35.0% | |
| ! | CCTGAGTTTTTGAATATTCG+TGG | - | tig0011913:72638-72657 | Msa1350840:intron | 35.0% |
| !! | CGTTGATGTTGGTATTGATA+TGG | - | tig0011913:72818-72837 | Msa1350840:intron | 35.0% |
| AGCAAAGAGCTATCAGTTAA+AGG | + | tig0011913:73160-73179 | None:intergenic | 35.0% | |
| TTTAACTGATAGCTCTTTGC+TGG | - | tig0011913:73159-73178 | Msa1350840:intron | 35.0% | |
| GCTGGTTATGGTTAATTTCA+AGG | - | tig0011913:73177-73196 | Msa1350840:intron | 35.0% | |
| ! | TAATCAGACATTTTGTGCCT+TGG | - | tig0011913:73765-73784 | Msa1350840:CDS | 35.0% |
| ATCATTAGGTACGTCTGTTC+CGG | + | tig0011913:70999-71018 | None:intergenic | 40.0% | |
| GACGTACCTAATGATGAAGA+CGG | - | tig0011913:71004-71023 | Msa1350840:three_prime_UTR | 40.0% | |
| AAGAAGCCGTCTTCATCATT+AGG | + | tig0011913:71013-71032 | None:intergenic | 40.0% | |
| ! | ATGATGAAGACGGCTTCTTT+TGG | - | tig0011913:71014-71033 | Msa1350840:three_prime_UTR | 40.0% |
| CAGAACAATGATCATGGCAA+AGG | - | tig0011913:71327-71346 | Msa1350840:exon | 40.0% | |
| TCGTAGCACTAAAATCGTCT+TGG | - | tig0011913:71854-71873 | Msa1350840:intron | 40.0% | |
| ! | TGAAGAGCTTTATACACACC+TGG | + | tig0011913:72190-72209 | None:intergenic | 40.0% |
| AACATTGTCCGACACAAACA+TGG | + | tig0011913:72312-72331 | None:intergenic | 40.0% | |
| GTGTCAAATACCTTATGGCA+GGG | + | tig0011913:72609-72628 | None:intergenic | 40.0% | |
| ! | GTGAGGTGTCAAATACCTTA+TGG | + | tig0011913:72614-72633 | None:intergenic | 40.0% |
| TCAAAAACTCAGGTGAAGTG+AGG | + | tig0011913:72631-72650 | None:intergenic | 40.0% | |
| AATACCAACATCAACGGAAG+TGG | + | tig0011913:72814-72833 | None:intergenic | 40.0% | |
| ! | CCATCACCTGCATATTTTCA+TGG | + | tig0011913:72987-73006 | None:intergenic | 40.0% |
| CCATGAAAATATGCAGGTGA+TGG | - | tig0011913:72984-73003 | Msa1350840:intron | 40.0% | |
| GAAACACCAATAGCCAGAAT+TGG | - | tig0011913:73081-73100 | Msa1350840:intron | 40.0% | |
| TTTAACAACGTCGCCAATTC+TGG | + | tig0011913:73097-73116 | None:intergenic | 40.0% | |
| ! | TGATAGCTCTTTGCTGGTTA+TGG | - | tig0011913:73165-73184 | Msa1350840:intron | 40.0% |
| !!! | ATACTTTTTCCACCTCCTTG+TGG | - | tig0011913:73328-73347 | Msa1350840:CDS | 40.0% |
| GGTGAAAAAATGATCGGTGA+AGG | + | tig0011913:73383-73402 | None:intergenic | 40.0% | |
| TTTGGTCATACATACAGGCA+AGG | - | tig0011913:73492-73511 | Msa1350840:intron | 40.0% | |
| TTGGTCATACATACAGGCAA+GGG | - | tig0011913:73493-73512 | Msa1350840:intron | 40.0% | |
| GCAAGGGATTGAATGTACTT+TGG | - | tig0011913:73509-73528 | Msa1350840:intron | 40.0% | |
| ATTAAGTTCGGCTCATGTGT+TGG | + | tig0011913:73578-73597 | None:intergenic | 40.0% | |
| TATAGCTTCTCCTAAGCCTT+AGG | - | tig0011913:73630-73649 | Msa1350840:intron | 40.0% | |
| CAATCAAGGACAATCTCCTA+AGG | + | tig0011913:73649-73668 | None:intergenic | 40.0% | |
| CCAGCAAAAAACTACACTAG+AGG | + | tig0011913:73737-73756 | None:intergenic | 40.0% | |
| !!! | CCTCTAGTGTAGTTTTTTGC+TGG | - | tig0011913:73734-73753 | Msa1350840:intron | 40.0% |
| ! | GACATTGTTTGGAACAACCA+AGG | + | tig0011913:73785-73804 | None:intergenic | 40.0% |
| AGGATTGCCTTTGACACACA+AGG | - | tig0011913:70947-70966 | Msa1350840:three_prime_UTR | 45.0% | |
| GGATTGCCTTTGACACACAA+GGG | - | tig0011913:70948-70967 | Msa1350840:three_prime_UTR | 45.0% | |
| CGACAAACAACGGGATTAAC+CGG | - | tig0011913:70977-70996 | Msa1350840:three_prime_UTR | 45.0% | |
| !! | ATTTTGATCATTGGGGCGTG+TGG | - | tig0011913:71083-71102 | Msa1350840:three_prime_UTR | 45.0% |
| ! | TTTTGATCATTGGGGCGTGT+GGG | - | tig0011913:71084-71103 | Msa1350840:three_prime_UTR | 45.0% |
| TGGGTGCAGAACAATGATCA+TGG | - | tig0011913:71321-71340 | Msa1350840:exon | 45.0% | |
| TCCTGATAGAGTTCACTCCT+TGG | - | tig0011913:71551-71570 | Msa1350840:intron | 45.0% | |
| !! | CTTGGCTTTGCTAAACGCAA+CGG | - | tig0011913:71569-71588 | Msa1350840:intron | 45.0% |
| !! | TTGGCTTTGCTAAACGCAAC+GGG | - | tig0011913:71570-71589 | Msa1350840:intron | 45.0% |
| CAAACTTAGTTCAGGACGAG+TGG | - | tig0011913:71747-71766 | Msa1350840:intron | 45.0% | |
| !!! | GGACGAGTGGTACTGATTTT+AGG | - | tig0011913:71760-71779 | Msa1350840:intron | 45.0% |
| CTTGGTTCAAGCTATTAGCC+AGG | - | tig0011913:72169-72188 | Msa1350840:intron | 45.0% | |
| AGTCCCAACCATGTTTGTGT+CGG | - | tig0011913:72301-72320 | Msa1350840:intron | 45.0% | |
| TGTCCGACACAAACATGGTT+GGG | + | tig0011913:72307-72326 | None:intergenic | 45.0% | |
| TTGTCCGACACAAACATGGT+TGG | + | tig0011913:72308-72327 | None:intergenic | 45.0% | |
| CTTGCTTTCAGGAAAAGCAG+TGG | + | tig0011913:72352-72371 | None:intergenic | 45.0% | |
| !! | CTGCTTTTCCTGAAAGCAAG+AGG | - | tig0011913:72352-72371 | Msa1350840:intron | 45.0% |
| ! | TGAAGCATCCTCTTGCTTTC+AGG | + | tig0011913:72363-72382 | None:intergenic | 45.0% |
| GAATTGAGATCCCTGCCATA+AGG | - | tig0011913:72596-72615 | Msa1350840:intron | 45.0% | |
| GGTGTCAAATACCTTATGGC+AGG | + | tig0011913:72610-72629 | None:intergenic | 45.0% | |
| ATCTCCACTTCCGTTGATGT+TGG | - | tig0011913:72807-72826 | Msa1350840:intron | 45.0% | |
| TCGGAGTTTCATGTTCGATC+AGG | - | tig0011913:73057-73076 | Msa1350840:intron | 45.0% | |
| CGGAGTTTCATGTTCGATCA+GGG | - | tig0011913:73058-73077 | Msa1350840:intron | 45.0% | |
| GGAGTTTCATGTTCGATCAG+GGG | - | tig0011913:73059-73078 | Msa1350840:intron | 45.0% | |
| ! | TTTTTCCACCTCCTTGTGGT+TGG | - | tig0011913:73332-73351 | Msa1350840:CDS | 45.0% |
| GAAAACCAACTCCAACCACA+AGG | + | tig0011913:73346-73365 | None:intergenic | 45.0% | |
| !!! | TGTGGTTGGAGTTGGTTTTC+AGG | - | tig0011913:73346-73365 | Msa1350840:intron | 45.0% |
| CCATTGTTCACTGCCTTCTT+TGG | + | tig0011913:73551-73570 | None:intergenic | 45.0% | |
| CCAAAGAAGGCAGTGAACAA+TGG | - | tig0011913:73548-73567 | Msa1350840:intron | 45.0% | |
| AGGACAATCTCCTAAGGCTT+AGG | + | tig0011913:73643-73662 | None:intergenic | 45.0% | |
| !!! | AATACATTTTTTATTTAAAA+GGG | - | tig0011913:73805-73824 | Msa1350840:CDS | 5.0% |
| TTGCCTTTGACACACAAGGG+TGG | - | tig0011913:70951-70970 | Msa1350840:three_prime_UTR | 50.0% | |
| TGCCTTTGACACACAAGGGT+GGG | - | tig0011913:70952-70971 | Msa1350840:three_prime_UTR | 50.0% | |
| !! | GAAGACGGCTTCTTTTGGAG+AGG | - | tig0011913:71019-71038 | Msa1350840:three_prime_UTR | 50.0% |
| GCCAAGGAGTGAACTCTATC+AGG | + | tig0011913:71555-71574 | None:intergenic | 50.0% | |
| CGTTGCGTTTAGCAAAGCCA+AGG | + | tig0011913:71571-71590 | None:intergenic | 50.0% | |
| TCGTGGTTGCCCAATATTCG+TGG | - | tig0011913:72655-72674 | Msa1350840:intron | 50.0% | |
| ! | ACGTCGCCAATTCTGGCTAT+TGG | + | tig0011913:73090-73109 | None:intergenic | 50.0% |
| AACCAACTCCAACCACAAGG+AGG | + | tig0011913:73343-73362 | None:intergenic | 50.0% | |
| GCCTTTGACACACAAGGGTG+GGG | - | tig0011913:70953-70972 | Msa1350840:three_prime_UTR | 55.0% | |
| ACCCCACCCTTGTGTGTCAA+AGG | + | tig0011913:70957-70976 | None:intergenic | 55.0% | |
| AGGGTGGGGTCGACAAACAA+CGG | - | tig0011913:70967-70986 | Msa1350840:three_prime_UTR | 55.0% | |
| !! | GACGGCTTCTTTTGGAGAGG+AGG | - | tig0011913:71022-71041 | Msa1350840:three_prime_UTR | 55.0% |
| !! | GGCTTCTTTTGGAGAGGAGG+AGG | - | tig0011913:71025-71044 | Msa1350840:three_prime_UTR | 55.0% |
| GGAGGTGACAATGAGTCCAG+TGG | - | tig0011913:71043-71062 | Msa1350840:three_prime_UTR | 55.0% | |
| GGTGACAATGAGTCCAGTGG+TGG | - | tig0011913:71046-71065 | Msa1350840:three_prime_UTR | 55.0% | |
| TGAGTCCAGTGGTGGTATCG+AGG | - | tig0011913:71054-71073 | Msa1350840:three_prime_UTR | 55.0% | |
| GCAATCCTCGATACCACCAC+TGG | + | tig0011913:71062-71081 | None:intergenic | 55.0% | |
| GCTTTGCTAAACGCAACGGG+TGG | - | tig0011913:71573-71592 | Msa1350840:intron | 55.0% | |
| CAACTCCAACCACAAGGAGG+TGG | + | tig0011913:73340-73359 | None:intergenic | 55.0% | |
| CACCTCCTTGTGGTTGGAGT+TGG | - | tig0011913:73338-73357 | Msa1350840:CDS | 55.0% | |
| GGGTGGGGTCGACAAACAAC+GGG | - | tig0011913:70968-70987 | Msa1350840:three_prime_UTR | 60.0% | |
| GATCATTGGGGCGTGTGGGT+CGG | - | tig0011913:71088-71107 | Msa1350840:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011913 | gene | 70944 | 73930 | 70944 | ID=Msa1350840;Name=Msa1350840 |
| tig0011913 | mRNA | 70944 | 73930 | 70944 | ID=Msa1350840-mRNA-1;Parent=Msa1350840;Name=Msa1350840-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0.5|1|0.8|0.5|6|394|163 |
| tig0011913 | exon | 70944 | 71365 | 70944 | ID=Msa1350840-mRNA-1:exon:7563;Parent=Msa1350840-mRNA-1 |
| tig0011913 | exon | 72468 | 72594 | 72468 | ID=Msa1350840-mRNA-1:exon:7562;Parent=Msa1350840-mRNA-1 |
| tig0011913 | exon | 72779 | 72819 | 72779 | ID=Msa1350840-mRNA-1:exon:7561;Parent=Msa1350840-mRNA-1 |
| tig0011913 | exon | 73106 | 73113 | 73106 | ID=Msa1350840-mRNA-1:exon:7560;Parent=Msa1350840-mRNA-1 |
| tig0011913 | exon | 73257 | 73357 | 73257 | ID=Msa1350840-mRNA-1:exon:7559;Parent=Msa1350840-mRNA-1 |
| tig0011913 | exon | 73744 | 73930 | 73744 | ID=Msa1350840-mRNA-1:exon:7558;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 73744 | 73930 | 73744 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 73257 | 73357 | 73257 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 73106 | 73113 | 73106 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 72779 | 72819 | 72779 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 72468 | 72594 | 72468 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | CDS | 71338 | 71365 | 71338 | ID=Msa1350840-mRNA-1:cds;Parent=Msa1350840-mRNA-1 |
| tig0011913 | three_prime_UTR | 70944 | 71337 | 70944 | ID=Msa1350840-mRNA-1:three_prime_utr;Parent=Msa1350840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
