AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327050 MtrunA17_Chr8g0355641 96.815 157 5 0 1 157 1 157 1.17e-111 313
Msa1327050 MtrunA17_Chr8g0355741 75.641 156 38 0 1 156 1 156 3.17e-86 249
Msa1327050 MtrunA17_Chr8g0355721 70.513 156 45 1 1 156 1 155 9.16e-83 240
Msa1327050 MtrunA17_Chr8g0355781 71.523 151 43 0 1 151 1 151 1.10e-81 238
Msa1327050 MtrunA17_Chr8g0355661 69.231 156 47 1 1 156 1 155 3.05e-79 231
Msa1327050 MtrunA17_Chr8g0355761 68.874 151 47 0 1 151 1 151 6.27e-78 228
Msa1327050 MtrunA17_Chr8g0355811 66.026 156 52 1 1 156 1 155 5.62e-77 226
Msa1327050 MtrunA17_Chr8g0355821 66.452 155 51 1 1 155 1 154 6.40e-75 221
Msa1327050 MtrunA17_Chr8g0355791 63.462 156 56 1 1 156 1 155 3.67e-71 211
Msa1327050 MtrunA17_Chr8g0355801 63.462 156 56 1 1 156 1 155 6.27e-71 210
Msa1327050 MtrunA17_Chr8g0355771 62.821 156 57 1 1 156 1 155 3.66e-70 208
Msa1327050 MtrunA17_Chr1g0160371 42.208 154 86 2 1 152 1 153 6.52e-38 127
Msa1327050 MtrunA17_Chr1g0160381 39.610 154 90 2 1 152 5 157 2.83e-36 122
Msa1327050 MtrunA17_Chr8g0339261 32.667 150 98 3 6 154 8 155 5.19e-26 96.7
Msa1327050 MtrunA17_Chr1g0160351 46.739 92 47 1 63 152 3 94 2.16e-22 85.5
Msa1327050 MtrunA17_Chr1g0160391 32.692 156 97 4 1 149 1 155 1.17e-21 85.5
Msa1327050 MtrunA17_Chr1g0160801 34.694 147 87 5 7 151 7 146 6.34e-21 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327050 AT5G28010.1 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1327050 AT5G28010.2 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1327050 AT1G70830.5 32.237 152 100 3 3 152 22 172 7.46e-22 86.7
Msa1327050 AT1G70830.3 32.237 152 100 3 3 152 22 172 1.55e-21 86.7
Msa1327050 AT1G70840.1 31.579 152 101 3 3 152 20 170 4.39e-21 84.7
Msa1327050 AT1G70830.2 32.237 152 100 3 3 152 22 172 4.44e-21 86.7
Msa1327050 AT1G70830.1 32.237 152 100 3 3 152 22 172 1.29e-20 86.7
Msa1327050 AT1G70830.1 30.921 152 102 3 3 152 184 334 4.03e-19 82.4
Msa1327050 AT1G70890.1 30.921 152 102 3 3 152 7 157 2.32e-20 82.4
Msa1327050 AT1G70830.4 30.921 152 102 3 3 152 137 287 1.91e-19 82.8
Msa1327050 AT1G70850.2 30.667 150 101 3 3 150 9 157 4.38e-19 80.9
Msa1327050 AT1G70850.3 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1327050 AT1G70850.3 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1327050 AT1G70850.1 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1327050 AT1G70850.1 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1327050 AT1G23120.1 28.105 153 105 3 1 153 1 148 1.99e-18 77.0
Msa1327050 AT1G23120.2 28.758 153 102 4 3 153 51 198 1.17e-17 76.3
Msa1327050 AT1G23130.1 27.152 151 108 2 3 152 10 159 6.07e-17 73.6
Msa1327050 AT5G28000.1 28.947 152 105 3 3 152 13 163 1.68e-16 72.4
Msa1327050 AT1G70870.1 32.450 151 89 4 1 151 1 138 1.73e-16 72.0
Msa1327050 AT4G23670.1 29.605 152 104 3 1 151 1 150 6.06e-16 70.9
Msa1327050 AT1G70880.1 25.658 152 110 3 3 152 8 158 3.24e-15 68.9
Msa1327050 AT1G24020.1 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1327050 AT1G24020.2 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1327050 AT2G01520.1 27.632 152 107 3 1 151 1 150 1.41e-14 67.4
Msa1327050 AT1G14930.1 26.974 152 108 3 1 151 1 150 6.82e-14 65.5
Msa1327050 AT2G01530.1 28.289 152 106 3 1 151 1 150 1.73e-13 64.3
Msa1327050 AT1G35260.1 27.517 149 98 4 7 150 6 149 6.52e-13 62.8
Msa1327050 AT1G35310.1 26.761 142 101 3 13 153 12 151 9.94e-13 62.4
Msa1327050 AT4G14060.1 26.974 152 108 3 1 151 1 150 1.28e-12 62.0
Msa1327050 AT4G23680.1 25.658 152 110 3 1 151 1 150 2.61e-12 61.2
Msa1327050 AT1G30990.1 27.815 151 105 4 1 150 1 148 1.22e-11 59.7
Msa1327050 AT1G14940.1 26.490 151 108 3 1 150 1 149 1.45e-11 59.3

Find 40 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTTCTTATGACTTA+TGG 0.173467 8_4:+43054904 None:intergenic
GATTATGTTTCTTGGAAATT+AGG 0.208750 8_4:-43054632 Msa1327050:three_prime_UTR
ATTTAAAGGTCGCTCATATT+TGG 0.220038 8_4:-43054568 Msa1327050:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_4:-43056433 Msa1327050:CDS
TCATGTTTGATTATGTTTCT+TGG 0.260153 8_4:-43054640 Msa1327050:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_4:+43054982 None:intergenic
ACTCTCCTATATCTATTTAA+AGG 0.290742 8_4:-43054582 Msa1327050:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_4:-43055044 Msa1327050:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_4:-43054816 Msa1327050:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_4:-43054668 Msa1327050:three_prime_UTR
CTTCGCTCATGAATATTCAT+TGG 0.375019 8_4:+43054452 None:intergenic
TGAAAGAAAGAAAGAAAGAA+AGG 0.432553 8_4:+43056491 None:intergenic
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_4:+43056324 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_4:-43056432 Msa1327050:CDS
AGCGACCTTTAAATAGATAT+AGG 0.461544 8_4:+43054577 None:intergenic
TAGGCAACAGATGAAGTAAT+CGG 0.462518 8_4:-43054613 Msa1327050:three_prime_UTR
AGAAATTGATGAGCACTATA+AGG 0.468901 8_4:-43055103 Msa1327050:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_4:-43055129 Msa1327050:CDS
GACGACTTATAGTGAAATAG+AGG 0.493566 8_4:+43054335 None:intergenic
TATTCCATCCAACTATTTGG+AGG 0.505271 8_4:+43054985 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_4:-43056321 Msa1327050:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_4:+43055121 None:intergenic
GAAAGAAAGAAAGAAAGAAA+GGG 0.515116 8_4:+43056492 None:intergenic
TCATAAGAAATAAGTAGTAA+TGG 0.515556 8_4:-43054897 Msa1327050:three_prime_UTR
CATCATTGAAGTGATTGATA+AGG 0.521648 8_4:-43055070 Msa1327050:CDS
TAATGGAATGGCTTAATGCA+TGG 0.530715 8_4:-43054880 Msa1327050:three_prime_UTR
AGAAATAAGTAGTAATGGAA+TGG 0.530981 8_4:-43054892 Msa1327050:three_prime_UTR
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_4:-43054993 Msa1327050:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_4:-43055199 Msa1327050:intron
AATGGAATGGCTTAATGCAT+GGG 0.552317 8_4:-43054879 Msa1327050:three_prime_UTR
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_4:-43056331 Msa1327050:CDS
GAAAAGTGATGACGACTCAA+AGG 0.581488 8_4:-43054421 Msa1327050:three_prime_UTR
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_4:-43054989 Msa1327050:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_4:+43054962 None:intergenic
ACTCTGATTCAGTTAAACAC+TGG 0.620261 8_4:-43056294 Msa1327050:CDS
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_4:+43056399 None:intergenic
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_4:-43054932 Msa1327050:CDS
ATGGAATGGCTTAATGCATG+GGG 0.652110 8_4:-43054878 Msa1327050:three_prime_UTR
GAAGTGATTGATAAGGCTGA+TGG 0.663192 8_4:-43055063 Msa1327050:CDS
AAACACTGGACTCATGTCCG+AGG 0.721608 8_4:-43056280 Msa1327050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTTTTTTTTTTTTTG+GGG - chr8_4:43055449-43055468 Msa1327050:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_4:43055617-43055636 None:intergenic 10.0%
!!! ACAATTTTTTTTTTTTTTTG+GGG - chr8_4:43055449-43055468 Msa1327050:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_4:43055617-43055636 None:intergenic 10.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_4:43054585-43054604 None:intergenic 15.0%
!!! GACATCTTTAAATTTTATTT+TGG - chr8_4:43054734-43054753 Msa1327050:three_prime_UTR 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_4:43054804-43054823 Msa1327050:three_prime_UTR 15.0%
!!! GTCATCTAATTTTAATTTAA+TGG + chr8_4:43055074-43055093 None:intergenic 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_4:43055213-43055232 Msa1327050:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_4:43055330-43055349 Msa1327050:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_4:43055402-43055421 None:intergenic 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_4:43055550-43055569 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_4:43055610-43055629 Msa1327050:intron 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_4:43054585-43054604 None:intergenic 15.0%
!!! GACATCTTTAAATTTTATTT+TGG - chr8_4:43054734-43054753 Msa1327050:three_prime_UTR 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_4:43054804-43054823 Msa1327050:three_prime_UTR 15.0%
!!! GTCATCTAATTTTAATTTAA+TGG + chr8_4:43055074-43055093 None:intergenic 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_4:43055213-43055232 Msa1327050:intron 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_4:43055330-43055349 Msa1327050:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_4:43055402-43055421 None:intergenic 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_4:43055550-43055569 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_4:43055610-43055629 Msa1327050:intron 15.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_4:43054803-43054822 Msa1327050:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_4:43054856-43054875 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_4:43054855-43054874 Msa1327050:three_prime_UTR 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_4:43054891-43054910 Msa1327050:three_prime_UTR 20.0%
!! AAAGATATAAAGGTTCAAAT+TGG - chr8_4:43054901-43054920 Msa1327050:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_4:43054936-43054955 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_4:43054994-43055013 Msa1327050:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_4:43054999-43055018 None:intergenic 20.0%
!!! TTTTAATTTAATGGTCAGTA+AGG + chr8_4:43055065-43055084 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_4:43055342-43055361 Msa1327050:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG + chr8_4:43055944-43055963 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG - chr8_4:43055948-43055967 Msa1327050:intron 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG - chr8_4:43056069-43056088 Msa1327050:intron 20.0%
!!! AATTGTTTTTTGTGCTTTTT+TGG - chr8_4:43056117-43056136 Msa1327050:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_4:43056177-43056196 Msa1327050:intron 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_4:43054803-43054822 Msa1327050:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_4:43054856-43054875 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_4:43054855-43054874 Msa1327050:three_prime_UTR 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_4:43054891-43054910 Msa1327050:three_prime_UTR 20.0%
!! AAAGATATAAAGGTTCAAAT+TGG - chr8_4:43054901-43054920 Msa1327050:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_4:43054936-43054955 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_4:43054994-43055013 Msa1327050:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_4:43054999-43055018 None:intergenic 20.0%
!!! TTTTAATTTAATGGTCAGTA+AGG + chr8_4:43055065-43055084 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_4:43055342-43055361 Msa1327050:intron 20.0%
!!! TACTTATTTCTTATGACTTA+TGG + chr8_4:43055944-43055963 None:intergenic 20.0%
!! TCATAAGAAATAAGTAGTAA+TGG - chr8_4:43055948-43055967 Msa1327050:intron 20.0%
!!! TTTTTATGGAATAAATGTGT+CGG - chr8_4:43056069-43056088 Msa1327050:intron 20.0%
!!! AATTGTTTTTTGTGCTTTTT+TGG - chr8_4:43056117-43056136 Msa1327050:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_4:43056177-43056196 Msa1327050:intron 20.0%
! GAAAGAAAGAAAGAAAGAAA+GGG + chr8_4:43054356-43054375 None:intergenic 25.0%
! TGAAAGAAAGAAAGAAAGAA+AGG + chr8_4:43054357-43054376 None:intergenic 25.0%
! TTAGTTTCTCTCTTCAAAAA+TGG - chr8_4:43054381-43054400 Msa1327050:three_prime_UTR 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_4:43054596-43054615 Msa1327050:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_4:43054661-43054680 Msa1327050:three_prime_UTR 25.0%
! TTGTACAAGTACAACTATAA+AGG - chr8_4:43055242-43055261 Msa1327050:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG - chr8_4:43055953-43055972 Msa1327050:intron 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_4:43056008-43056027 Msa1327050:intron 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG - chr8_4:43056055-43056074 Msa1327050:intron 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_4:43056205-43056224 Msa1327050:intron 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_4:43056213-43056232 Msa1327050:intron 25.0%
! ACTCTCCTATATCTATTTAA+AGG - chr8_4:43056263-43056282 Msa1327050:intron 25.0%
! GAAAGAAAGAAAGAAAGAAA+GGG + chr8_4:43054356-43054375 None:intergenic 25.0%
! TGAAAGAAAGAAAGAAAGAA+AGG + chr8_4:43054357-43054376 None:intergenic 25.0%
! TTAGTTTCTCTCTTCAAAAA+TGG - chr8_4:43054381-43054400 Msa1327050:three_prime_UTR 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_4:43054596-43054615 Msa1327050:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_4:43054661-43054680 Msa1327050:three_prime_UTR 25.0%
! TTGTACAAGTACAACTATAA+AGG - chr8_4:43055242-43055261 Msa1327050:intron 25.0%
!! AGAAATAAGTAGTAATGGAA+TGG - chr8_4:43055953-43055972 Msa1327050:intron 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_4:43056008-43056027 Msa1327050:intron 25.0%
!!! GTTTTCATCTTTCGTTTTTA+TGG - chr8_4:43056055-43056074 Msa1327050:intron 25.0%
! TCATGTTTGATTATGTTTCT+TGG - chr8_4:43056205-43056224 Msa1327050:intron 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_4:43056213-43056232 Msa1327050:intron 25.0%
! ACTCTCCTATATCTATTTAA+AGG - chr8_4:43056263-43056282 Msa1327050:intron 25.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_4:43054413-43054432 Msa1327050:three_prime_UTR 30.0%
!!! ACTGGATTTATGTGCTATTT+TGG - chr8_4:43054614-43054633 Msa1327050:three_prime_UTR 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_4:43055346-43055365 Msa1327050:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_4:43055353-43055372 Msa1327050:intron 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_4:43055394-43055413 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_4:43055742-43055761 Msa1327050:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_4:43055775-43055794 Msa1327050:intron 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_4:43056271-43056290 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_4:43056277-43056296 Msa1327050:intron 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_4:43054413-43054432 Msa1327050:three_prime_UTR 30.0%
!!! ACTGGATTTATGTGCTATTT+TGG - chr8_4:43054614-43054633 Msa1327050:three_prime_UTR 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_4:43055346-43055365 Msa1327050:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_4:43055353-43055372 Msa1327050:intron 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_4:43055394-43055413 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_4:43055742-43055761 Msa1327050:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_4:43055775-43055794 Msa1327050:intron 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_4:43056271-43056290 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_4:43056277-43056296 Msa1327050:intron 30.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_4:43054412-43054431 Msa1327050:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_4:43054449-43054468 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_4:43054551-43054570 Msa1327050:three_prime_UTR 35.0%
ACAAGATATAGCAAAAGCGA+TGG - chr8_4:43055018-43055037 Msa1327050:CDS 35.0%
! ATAGCAAAAGCGATGGATTT+AGG - chr8_4:43055025-43055044 Msa1327050:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_4:43055352-43055371 Msa1327050:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_4:43055354-43055373 Msa1327050:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_4:43055716-43055735 Msa1327050:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_4:43055852-43055871 Msa1327050:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_4:43055863-43055882 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_4:43055866-43055885 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG - chr8_4:43055965-43055984 Msa1327050:intron 35.0%
AATGGAATGGCTTAATGCAT+GGG - chr8_4:43055966-43055985 Msa1327050:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_4:43056029-43056048 Msa1327050:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_4:43056232-43056251 Msa1327050:intron 35.0%
CTTCGCTCATGAATATTCAT+TGG + chr8_4:43056396-43056415 None:intergenic 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_4:43054412-43054431 Msa1327050:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_4:43054449-43054468 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_4:43054551-43054570 Msa1327050:three_prime_UTR 35.0%
ACAAGATATAGCAAAAGCGA+TGG - chr8_4:43055018-43055037 Msa1327050:CDS 35.0%
! ATAGCAAAAGCGATGGATTT+AGG - chr8_4:43055025-43055044 Msa1327050:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_4:43055352-43055371 Msa1327050:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_4:43055354-43055373 Msa1327050:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_4:43055716-43055735 Msa1327050:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_4:43055852-43055871 Msa1327050:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_4:43055863-43055882 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_4:43055866-43055885 None:intergenic 35.0%
TAATGGAATGGCTTAATGCA+TGG - chr8_4:43055965-43055984 Msa1327050:intron 35.0%
AATGGAATGGCTTAATGCAT+GGG - chr8_4:43055966-43055985 Msa1327050:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_4:43056029-43056048 Msa1327050:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_4:43056232-43056251 Msa1327050:intron 35.0%
CTTCGCTCATGAATATTCAT+TGG + chr8_4:43056396-43056415 None:intergenic 35.0%
TCTTCAAAAATGGTGCTTGC+TGG - chr8_4:43054391-43054410 Msa1327050:three_prime_UTR 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_4:43055640-43055659 Msa1327050:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_4:43055641-43055660 Msa1327050:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_4:43055727-43055746 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_4:43055782-43055801 Msa1327050:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_4:43055801-43055820 Msa1327050:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_4:43055856-43055875 Msa1327050:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_4:43055913-43055932 Msa1327050:intron 40.0%
ATGGAATGGCTTAATGCATG+GGG - chr8_4:43055967-43055986 Msa1327050:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_4:43056424-43056443 Msa1327050:CDS 40.0%
TCTTCAAAAATGGTGCTTGC+TGG - chr8_4:43054391-43054410 Msa1327050:three_prime_UTR 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_4:43055640-43055659 Msa1327050:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_4:43055641-43055660 Msa1327050:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_4:43055727-43055746 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_4:43055782-43055801 Msa1327050:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_4:43055801-43055820 Msa1327050:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_4:43055856-43055875 Msa1327050:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_4:43055913-43055932 Msa1327050:intron 40.0%
ATGGAATGGCTTAATGCATG+GGG - chr8_4:43055967-43055986 Msa1327050:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_4:43056424-43056443 Msa1327050:CDS 40.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_4:43054514-43054533 Msa1327050:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_4:43054524-43054543 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_4:43054524-43054543 Msa1327050:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_4:43055886-43055905 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_4:43054514-43054533 Msa1327050:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_4:43054524-43054543 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_4:43054524-43054543 Msa1327050:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_4:43055886-43055905 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_4:43055406-43055425 None:intergenic 5.0%
!!! TTACAATTTTTTTTTTTTTT+TGG - chr8_4:43055447-43055466 Msa1327050:intron 5.0%
!!! TACAATTTTTTTTTTTTTTT+GGG - chr8_4:43055448-43055467 Msa1327050:intron 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_4:43055521-43055540 Msa1327050:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_4:43055522-43055541 Msa1327050:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_4:43055406-43055425 None:intergenic 5.0%
!!! TTACAATTTTTTTTTTTTTT+TGG - chr8_4:43055447-43055466 Msa1327050:intron 5.0%
!!! TACAATTTTTTTTTTTTTTT+GGG - chr8_4:43055448-43055467 Msa1327050:intron 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_4:43055521-43055540 Msa1327050:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_4:43055522-43055541 Msa1327050:intron 5.0%
AAACACTGGACTCATGTCCG+AGG - chr8_4:43054565-43054584 Msa1327050:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_4:43055645-43055664 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_4:43055646-43055665 Msa1327050:intron 50.0%
AAACACTGGACTCATGTCCG+AGG - chr8_4:43054565-43054584 Msa1327050:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_4:43055645-43055664 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_4:43055646-43055665 Msa1327050:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 43054346 43056521 43054346 ID=Msa1327050;Name=Msa1327050
chr8_4 mRNA 43054346 43056521 43054346 ID=Msa1327050-mRNA-1;Parent=Msa1327050;Name=Msa1327050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=54|1|1|1|1|1|2|575|157
chr8_4 exon 43054346 43055207 43054346 ID=Msa1327050-mRNA-1:exon:12342;Parent=Msa1327050-mRNA-1
chr8_4 exon 43056281 43056521 43056281 ID=Msa1327050-mRNA-1:exon:12341;Parent=Msa1327050-mRNA-1
chr8_4 five_prime_UTR 43056468 43056521 43056468 ID=Msa1327050-mRNA-1:five_prime_utr;Parent=Msa1327050-mRNA-1
chr8_4 CDS 43056281 43056467 43056281 ID=Msa1327050-mRNA-1:cds;Parent=Msa1327050-mRNA-1
chr8_4 CDS 43054921 43055207 43054921 ID=Msa1327050-mRNA-1:cds;Parent=Msa1327050-mRNA-1
chr8_4 three_prime_UTR 43054346 43054920 43054346 ID=Msa1327050-mRNA-1:three_prime_utr;Parent=Msa1327050-mRNA-1
Gene Sequence

>Msa1327050

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACACTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1327050

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*