AlfalfaGEDB | Msa0360640

M. sativa cultivar zhongmu-4 / Msa0360640

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0360640	XP_003600177.1	98.718	156	2	0	1	156	1	156	1.11e-106	311

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0360640	sp\|G7J032\|PHBP_MEDTR	98.718	156	2	0	1	156	1	156	1.39e-109	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0360640	A0A396INQ3	98.718	156	2	0	1	156	1	156	5.30e-107	311

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0356240	Msa0360640	0.811235	7.747185e-51	-8.615850e-47
Msa0356270	Msa0360640	0.803011	4.272862e-49	-8.615850e-47
Msa0360640	Msa0403720	-0.803472	3.430257e-49	-8.615850e-47
Msa0360640	Msa0409250	0.958094	5.497903e-116	-8.615850e-47
Msa0360640	Msa0453970	0.938313	8.267060e-99	-8.615850e-47
Msa0360640	Msa0464620	0.805956	1.039269e-49	-8.615850e-47
Msa0360640	Msa0604280	0.813243	2.824401e-51	-8.615850e-47
Msa0360640	Msa0611950	0.812009	5.259929e-51	-8.615850e-47
Msa0360640	Msa0652210	0.804740	1.868159e-49	-8.615850e-47
Msa0360640	Msa0798840	0.808767	2.634694e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0360640	MtrunA17_Chr3g0100191	98.718	156	2	0	1	156	1	156	1.02e-110	311
Msa0360640	MtrunA17_Chr3g0100201	60.256	156	61	1	1	156	1	155	4.63e-61	185
Msa0360640	MtrunA17_Chr4g0067841	31.126	151	99	3	5	153	6	153	1.68e-11	58.9
Msa0360640	MtrunA17_Chr4g0039921	30.928	97	67	0	26	122	27	123	3.30e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 50 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGTGCAAGTAATTGA+AGG	0.557421	3_1:-50089922	Msa0360640:CDS
AACAACACTAAATGTAGGGT+TGG	0.556486	3_1:-50090013	Msa0360640:CDS
AACAACTAAGGTGATATCCT+TGG	0.527317	3_1:+50089969	None:intergenic
AACACTAAATGTAGGGTTGG+AGG	0.516628	3_1:-50090010	Msa0360640:CDS
AACAGAAAAGATAGAATAAA+TGG	0.190403	3_1:+50089341	None:intergenic
AAGATCAAGTTAAGGCCAAA+AGG	0.494172	3_1:+50089246	None:intergenic
AAGATGTGCAAGTAATTGAA+GGG	0.598044	3_1:-50089921	Msa0360640:CDS
AAGTAATTGAAGGGGATGGA+GGG	0.491464	3_1:-50089912	Msa0360640:CDS
AATATCAGAGAATAAAACTT+TGG	0.496609	3_1:-50089518	Msa0360640:CDS
AATTGATATGAGAATCCTTT+TGG	0.336608	3_1:-50089261	Msa0360640:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTGATGAGTCATGATAA+AGG	-	chr3_1:50089261-50089280	Msa0360640:three_prime_UTR	30.0%
ACAATATTTGGTAGAACCTT+TGG	+	chr3_1:50089367-50089386	None:intergenic	30.0%
TGCACATCTTTCACAATATT+TGG	+	chr3_1:50089379-50089398	None:intergenic	30.0%
AAAGATGTGCAAGTAATTGA+AGG	-	chr3_1:50089388-50089407	Msa0360640:exon	30.0%
AAGATGTGCAAGTAATTGAA+GGG	-	chr3_1:50089389-50089408	Msa0360640:exon	30.0%
ATGAGTTATCCCATACAATT+GGG	-	chr3_1:50089698-50089717	Msa0360640:intron	30.0%
TTGCCCAAGATAAAATAAAG+TGG	+	chr3_1:50089893-50089912	None:intergenic	30.0%
TTTATCATGACTCATCAATG+TGG	+	chr3_1:50089262-50089281	None:intergenic	30.0%
ACATTGATGAGTCATGATAA+AGG	-	chr3_1:50089261-50089280	Msa0360640:three_prime_UTR	30.0%
ACAATATTTGGTAGAACCTT+TGG	+	chr3_1:50089367-50089386	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	50089260	50090072	50089260	ID=Msa0360640;Name=Msa0360640
chr3_1	mRNA	50089260	50090072	50089260	ID=Msa0360640-mRNA-1;Parent=Msa0360640;Name=Msa0360640-mRNA-1;_AED=0.22;_eAED=0.22;_QI=14\|1\|1\|1\|1\|1\|2\|130\|156
chr3_1	exon	50089260	50089679	50089260	ID=Msa0360640-mRNA-1:exon:8856;Parent=Msa0360640-mRNA-1
chr3_1	exon	50089878	50090072	50089878	ID=Msa0360640-mRNA-1:exon:8855;Parent=Msa0360640-mRNA-1
chr3_1	five_prime_UTR	50090059	50090072	50090059	ID=Msa0360640-mRNA-1:five_prime_utr;Parent=Msa0360640-mRNA-1
chr3_1	CDS	50089878	50090058	50089878	ID=Msa0360640-mRNA-1:cds;Parent=Msa0360640-mRNA-1
chr3_1	CDS	50089390	50089679	50089390	ID=Msa0360640-mRNA-1:cds;Parent=Msa0360640-mRNA-1
chr3_1	three_prime_UTR	50089260	50089389	50089260	ID=Msa0360640-mRNA-1:three_prime_utr;Parent=Msa0360640-mRNA-1

Gene Sequence

>Msa0360640

ATGATAAAGGAATTCAACACCCAAACAACACTAAATGTAGGGTTGGAGGCTCTCTGGGCTGCACAGTCCAAGGATATCACCTTAGTTGTTCCAAAGGTTCTACCAAATATTGTGAAAGATGTGCAAGTAATTGAAGGGGATGGAGGGGTTGGTACCAAACTCATCTTTAATTTTTTGCCTGGTATATCTCCAGTAAATTATCAAAGGGAGGTGATCACTGAGTATGATGAGTTATCCCATACAATTGGGCTCCAAGTGGTTGAAGGAGGCTATCTCAATCAAGGCTTGTCATACTACAAGACAACTTTCCAATTCTCAGCAATATCAGAGAATAAAACTTTGGTGAATGTGAAGATCTCTTATGATCATGAATCTGACCTCATAGAAGAAAAAGTCAAACCTACCAAGACATCAGAGTCCACTTTATTTTATCTTGGGCAACTAGAAAAATTTCTGTTAAATGGTGCTTGA

Protein sequence

>Msa0360640

MIKEFNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGISPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDHESDLIEEKVKPTKTSESTLFYLGQLEKFLLNGA*