AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024480 MtrunA17_Chr7g0242391 87.160 257 32 1 1 256 1 257 2.32e-170 470
Msa1024480 MtrunA17_Chr7g0242401 69.170 253 74 2 1 253 32 280 8.57e-128 363
Msa1024480 MtrunA17_Chr7g0242411 67.589 253 73 4 1 253 1 244 4.18e-123 350
Msa1024480 MtrunA17_Chr7g0242431 66.667 252 80 2 2 253 32 279 1.27e-122 350
Msa1024480 MtrunA17_Chr7g0242451 61.789 246 89 3 2 247 6 246 3.19e-112 323
Msa1024480 MtrunA17_Chr4g0006731 58.431 255 102 2 1 254 5 256 2.74e-108 313
Msa1024480 MtrunA17_Chr7g0242461 59.200 250 97 3 1 249 5 250 1.96e-105 306
Msa1024480 MtrunA17_Chr3g0113401 53.150 254 115 2 2 254 6 256 1.54e-99 291
Msa1024480 MtrunA17_Chr7g0242441 47.012 251 67 3 1 251 2 186 1.51e-73 222
Msa1024480 MtrunA17_Chr2g0283421 34.874 238 144 4 2 232 5 238 6.10e-44 149
Msa1024480 MtrunA17_Chr2g0283411 34.025 241 145 4 2 234 4 238 9.11e-42 143
Msa1024480 MtrunA17_Chr4g0059001 28.959 221 144 4 33 247 61 274 9.89e-27 104
Msa1024480 MtrunA17_Chr2g0283391 30.337 178 101 7 37 207 1 162 5.67e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024480 AT3G11210.1 51.575 254 119 2 2 254 6 256 1.16e-96 284
Msa1024480 AT2G38180.1 55.417 240 95 4 1 238 5 234 2.62e-90 270
Msa1024480 AT5G45920.1 39.437 213 120 2 1 207 2 211 5.64e-48 159
Msa1024480 AT5G45920.4 39.437 213 120 2 1 207 2 211 5.64e-48 159
Msa1024480 AT5G62930.1 33.610 241 145 4 1 234 1 233 1.90e-43 147
Msa1024480 AT5G62930.2 33.610 241 145 4 1 234 27 259 4.01e-43 147
Msa1024480 AT5G45920.2 39.153 189 106 2 1 183 2 187 4.38e-41 140
Msa1024480 AT5G45920.3 39.153 189 106 2 1 183 2 187 4.38e-41 140
Msa1024480 AT5G62930.3 29.885 174 110 3 68 234 7 175 8.37e-23 92.4

Find 87 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTAAGGATCCTTGAATT+TGG 0.148883 7_1:+53847991 None:intergenic
TTTATATGTTCAATAATAAA+TGG 0.196617 7_1:-53847936 Msa1024480:three_prime_UTR
AAGACAATGCCAGTTGAATT+TGG 0.242127 7_1:-53848123 Msa1024480:CDS
ATTGAGAAAATAAGATAATT+AGG 0.264781 7_1:-53851260 Msa1024480:five_prime_UTR
AATGAATCCAGTGATGAATT+TGG 0.267380 7_1:-53848483 Msa1024480:intron
GAACCAAACAACACAAATTT+AGG 0.285170 7_1:+53851223 None:intergenic
GTATTCAATTAATAATAAAA+AGG 0.286512 7_1:-53847805 Msa1024480:three_prime_UTR
CCCTAAGGATCCTTGAATTT+GGG 0.302456 7_1:+53847992 None:intergenic
GCCATATGTTGGGCCTAATA+TGG 0.340280 7_1:-53847842 Msa1024480:three_prime_UTR
GAAATGTGCCTAGGGAAATA+TGG 0.356640 7_1:-53847970 Msa1024480:three_prime_UTR
CAATCATTATGGTGAAGGTT+GGG 0.369849 7_1:-53851185 Msa1024480:CDS
AGATTGAAGACTACCATATT+AGG 0.370538 7_1:+53847829 None:intergenic
CTTCCACATCCAAGTGGTCT+TGG 0.377231 7_1:-53849240 Msa1024480:CDS
ACTGGAAACCAAGTCTATAT+TGG 0.384084 7_1:-53848146 Msa1024480:CDS
TTCTATTTGCTCGTCACTGA+TGG 0.384722 7_1:+53848810 None:intergenic
ATTGTTCAATACAATCATTA+TGG 0.393001 7_1:-53851196 Msa1024480:CDS
AGGCCTAAATTTGTGTTGTT+TGG 0.393187 7_1:-53851226 Msa1024480:CDS
CATTCCCACATGACGAGGAT+TGG 0.411965 7_1:-53848035 Msa1024480:CDS
TCCCAAATTCAAGGATCCTT+AGG 0.418243 7_1:-53847993 Msa1024480:three_prime_UTR
ATTCCCACATGACGAGGATT+GGG 0.425826 7_1:-53848034 Msa1024480:CDS
ATCAGTGACGAGCAAATAGA+AGG 0.431393 7_1:-53848808 Msa1024480:CDS
GAATCTTCTCCAAATTCAAC+TGG 0.437465 7_1:+53848114 None:intergenic
TGGTTGCTCTTGTTGCTCAA+TGG 0.444287 7_1:+53849302 None:intergenic
ATGAATCCAGTGATGAATTT+GGG 0.445366 7_1:-53848482 Msa1024480:intron
TGGTCCTCATGTTCCATTGG+AGG 0.451423 7_1:-53849220 Msa1024480:CDS
ATGAATTTGGGAAAGCAGTA+AGG 0.462716 7_1:-53848470 Msa1024480:CDS
TAATTCAGAGAAGAGAAGAT+TGG 0.466754 7_1:-53848362 Msa1024480:CDS
ATCAAATTTCACTACTTACA+TGG 0.469010 7_1:+53847885 None:intergenic
TCTTGGTCCTCATGTTCCAT+TGG 0.469377 7_1:-53849223 Msa1024480:CDS
GGAGTTCATTTCTCTGCTGA+GGG 0.470947 7_1:-53848216 Msa1024480:CDS
TCAGGATGAAGTGGATCATA+TGG 0.473741 7_1:+53848090 None:intergenic
TTAATAGTTGACGTTCCATC+AGG 0.477377 7_1:+53848072 None:intergenic
CCCAAATTCAAGGATCCTTA+GGG 0.480691 7_1:-53847992 Msa1024480:three_prime_UTR
AGAAAATAAGATAATTAGGT+AGG 0.480752 7_1:-53851256 Msa1024480:five_prime_UTR
CTCTGCTGAGGGGAGTGAAA+TGG 0.488755 7_1:-53848205 Msa1024480:CDS
ACAATCATTATGGTGAAGGT+TGG 0.489722 7_1:-53851186 Msa1024480:CDS
GATACGCTGGTTGGAATTCA+AGG 0.490553 7_1:-53849687 Msa1024480:CDS
AAATCAAGGCCATTGATTTG+TGG 0.494052 7_1:-53848389 Msa1024480:CDS
CAATCCTCGTCATGTGGGAA+TGG 0.494781 7_1:+53848036 None:intergenic
ACCATATTAGGCCCAACATA+TGG 0.497314 7_1:+53847841 None:intergenic
TTTACAGATGTGTGATGCTA+TGG 0.499622 7_1:-53848412 Msa1024480:CDS
AGGAATATAAGTCGAGTCTT+CGG 0.500287 7_1:+53848844 None:intergenic
TGGAGTTCATTTCTCTGCTG+AGG 0.503530 7_1:-53848217 Msa1024480:CDS
CACTCCCAATCCTCGTCATG+TGG 0.505983 7_1:+53848030 None:intergenic
TCAGAGAAGAGAAGATTGGA+AGG 0.506355 7_1:-53848358 Msa1024480:CDS
GCTTAAGTTAAGCCATATGT+TGG 0.508009 7_1:-53847853 Msa1024480:three_prime_UTR
GGTGTCAAAGGAAATAATTA+AGG 0.512022 7_1:-53848184 Msa1024480:CDS
TTAGCGATTGTGTACTTTGG+TGG 0.513174 7_1:-53849276 Msa1024480:CDS
CTTAAGTTAAGCCATATGTT+GGG 0.513969 7_1:-53847852 Msa1024480:three_prime_UTR
AGACTTATGTCCCAAATTCA+AGG 0.515628 7_1:-53848002 Msa1024480:three_prime_UTR
CAATACAATCATTATGGTGA+AGG 0.519514 7_1:-53851190 Msa1024480:CDS
GCTACTCTTGCTCACTTGTA+CGG 0.520179 7_1:-53851160 Msa1024480:CDS
GAACATTGCTAATTATCTAA+AGG 0.520550 7_1:-53849178 Msa1024480:intron
TGCTCACTTGTACGGTCGTA+AGG 0.520953 7_1:-53851152 Msa1024480:intron
TCTATTTGCTCGTCACTGAT+GGG 0.521323 7_1:+53848811 None:intergenic
AATCATTATGGTGAAGGTTG+GGG 0.521403 7_1:-53851184 Msa1024480:CDS
GCATTAGCGATTGTGTACTT+TGG 0.523965 7_1:-53849279 Msa1024480:CDS
AATTAAAGACCACAAATCAA+TGG 0.527394 7_1:+53848380 None:intergenic
TCCCTAGGCACATTTCCCTA+AGG 0.539186 7_1:+53847977 None:intergenic
AGGAATACATAGAAAATATG+AGG 0.540166 7_1:-53849200 Msa1024480:CDS
ACATGAGGACCAAGACCACT+TGG 0.540240 7_1:+53849231 None:intergenic
AGGTCATCAAAGAAGCAGAC+TGG 0.550907 7_1:-53848164 Msa1024480:CDS
TATGATCCACTTCATCCTGA+TGG 0.553655 7_1:-53848087 Msa1024480:CDS
AAGGCGTGGTCTACAAGTTG+TGG 0.554579 7_1:-53849668 Msa1024480:CDS
GACGTTCCATCAGGATGAAG+TGG 0.556264 7_1:+53848081 None:intergenic
GGACCAAGACCACTTGGATG+TGG 0.561284 7_1:+53849237 None:intergenic
TCCTTAGGGAAATGTGCCTA+GGG 0.564002 7_1:-53847978 Msa1024480:three_prime_UTR
ATTGTCTTCCAATATAGACT+TGG 0.570415 7_1:+53848138 None:intergenic
GAAGACTACCATATTTCCCT+AGG 0.570773 7_1:+53847962 None:intergenic
GTGTGATGCTATGGAAATCA+AGG 0.573097 7_1:-53848403 Msa1024480:CDS
GTCATGTGGGAATGGAACAT+TGG 0.578847 7_1:+53848044 None:intergenic
ATCCTTAGGGAAATGTGCCT+AGG 0.580844 7_1:-53847979 Msa1024480:three_prime_UTR
AAGTACACAATCGCTAATGC+TGG 0.582708 7_1:+53849282 None:intergenic
GGGGAGTGAAATGGTGTCAA+AGG 0.585018 7_1:-53848196 Msa1024480:CDS
TGTTCCATTCCCACATGACG+AGG 0.605113 7_1:-53848040 Msa1024480:CDS
CACATGACGAGGATTGGGAG+TGG 0.610871 7_1:-53848029 Msa1024480:CDS
ATAATGATTGTATTGAACAA+TGG 0.612955 7_1:+53851198 None:intergenic
ACATGACGAGGATTGGGAGT+GGG 0.614997 7_1:-53848028 Msa1024480:CDS
ACTCCCAATCCTCGTCATGT+GGG 0.618376 7_1:+53848031 None:intergenic
ATTTGCTCGTCACTGATGGG+AGG 0.620352 7_1:+53848814 None:intergenic
TATTCCTCCAATGGAACATG+AGG 0.621940 7_1:+53849216 None:intergenic
GAGTTCATTTCTCTGCTGAG+GGG 0.625207 7_1:-53848215 Msa1024480:CDS
TCTCATCTTCCACATCCAAG+TGG 0.677695 7_1:-53849246 Msa1024480:CDS
GCTGGTTGGAATTCAAGGCG+TGG 0.697276 7_1:-53849682 Msa1024480:CDS
CACTGATGGGAGGACAACTG+AGG 0.703954 7_1:+53848824 None:intergenic
ATAATTAGGTAGGAGCAATG+AGG 0.711213 7_1:-53851246 Msa1024480:exon
GGATGATCATGACTTGATCG+TGG 0.738336 7_1:-53847915 Msa1024480:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTAAATAATTAAA+AGG - chr7_1:53848676-53848695 Msa1024480:intron 0.0%
!! AAATATTTAAATAATTAAAA+GGG - chr7_1:53848677-53848696 Msa1024480:intron 0.0%
!! AATTATAACACTAATATAAA+TGG + chr7_1:53848217-53848236 None:intergenic 10.0%
!! ACTAAGTAAAAATAATAATT+TGG + chr7_1:53848538-53848557 None:intergenic 10.0%
!! TTATATAATACATAAAAGTT+AGG + chr7_1:53850494-53850513 None:intergenic 10.0%
!! TTTATATGTTCAATAATAAA+TGG - chr7_1:53851073-53851092 Msa1024480:intron 10.0%
!! GTATTCAATTAATAATAAAA+AGG - chr7_1:53851204-53851223 Msa1024480:CDS 10.0%
!! ATTGAGAAAATAAGATAATT+AGG - chr7_1:53847749-53847768 Msa1024480:three_prime_UTR 15.0%
!!! AATAAGATTTTGTTAAAGTA+AGG + chr7_1:53848771-53848790 None:intergenic 15.0%
!!! ATTTTTTTTACCTCAAATAT+TGG - chr7_1:53849919-53849938 Msa1024480:intron 15.0%
!!! AGATATACAATAATTTTATG+TGG + chr7_1:53850029-53850048 None:intergenic 15.0%
!! TTAGGAATTAAAAATCTAAT+AGG + chr7_1:53850476-53850495 None:intergenic 15.0%
!! ATTTCAATCATTTAATTAAG+TGG - chr7_1:53850750-53850769 Msa1024480:intron 15.0%
!! AGAAAATAAGATAATTAGGT+AGG - chr7_1:53847753-53847772 Msa1024480:three_prime_UTR 20.0%
!! ATAATGATTGTATTGAACAA+TGG + chr7_1:53847814-53847833 None:intergenic 20.0%
!! ATTGTTCAATACAATCATTA+TGG - chr7_1:53847813-53847832 Msa1024480:three_prime_UTR 20.0%
!!! AAAGTACTTATAAAAAGAGA+TGG + chr7_1:53847916-53847935 None:intergenic 20.0%
!!! TCATTTTTAGGTACATAAAT+GGG - chr7_1:53848908-53848927 Msa1024480:intron 20.0%
!!! AGGATAAAATATTATTTCTG+AGG + chr7_1:53849440-53849459 None:intergenic 20.0%
!! AAAAAAGTGAAATTAAGCTT+AGG + chr7_1:53849460-53849479 None:intergenic 20.0%
!!! TATCTCAATTTTTTAGTCAA+TGG - chr7_1:53849505-53849524 Msa1024480:intron 20.0%
!!! GAAGATTATATTGATTTACA+TGG - chr7_1:53849548-53849567 Msa1024480:intron 20.0%
!!! ATGATAATGACAATTAAGAT+AGG + chr7_1:53849886-53849905 None:intergenic 20.0%
!! TCTTAATTGTCATTATCATA+TGG - chr7_1:53849887-53849906 Msa1024480:intron 20.0%
!!! CTTTTTCAACTACAATAATT+TGG - chr7_1:53849987-53850006 Msa1024480:intron 20.0%
!!! ACAATAATTTTATGTGGTTT+CGG + chr7_1:53850023-53850042 None:intergenic 20.0%
!! AATCATTTAATTAAGTGGTT+TGG - chr7_1:53850755-53850774 Msa1024480:intron 20.0%
! ACACACAATTATGAGATATT+GGG + chr7_1:53848042-53848061 None:intergenic 25.0%
! TTCTTTAAGCCACAAATAAA+AGG - chr7_1:53848116-53848135 Msa1024480:CDS 25.0%
!! TAACATCACCCTAATAATTT+TGG + chr7_1:53848350-53848369 None:intergenic 25.0%
! CACAATTTATTATTTCGTCA+AGG - chr7_1:53848700-53848719 Msa1024480:intron 25.0%
! AAAAATGAGTATCTCTATTG+TGG + chr7_1:53848896-53848915 None:intergenic 25.0%
!!! CAATAGAGATACTCATTTTT+AGG - chr7_1:53848896-53848915 Msa1024480:intron 25.0%
!!! CTCATTTTTAGGTACATAAA+TGG - chr7_1:53848907-53848926 Msa1024480:intron 25.0%
! AAGAAATTTGTATGAGATCT+GGG + chr7_1:53849004-53849023 None:intergenic 25.0%
! TAAGAAATTTGTATGAGATC+TGG + chr7_1:53849005-53849024 None:intergenic 25.0%
! AGTCTTAAACATATAAGACT+TGG + chr7_1:53849192-53849211 None:intergenic 25.0%
!!! ATATTATTTCTGAGGAAAGA+AGG + chr7_1:53849432-53849451 None:intergenic 25.0%
!!! TGATCATGTGCAAATTTTTT+AGG - chr7_1:53849479-53849498 Msa1024480:intron 25.0%
!!! GATCATGTGCAAATTTTTTA+GGG - chr7_1:53849480-53849499 Msa1024480:intron 25.0%
! TATAATGATCTTGCTGAATA+AGG - chr7_1:53849583-53849602 Msa1024480:intron 25.0%
! AGGAATACATAGAAAATATG+AGG - chr7_1:53849809-53849828 Msa1024480:intron 25.0%
! GAACATTGCTAATTATCTAA+AGG - chr7_1:53849831-53849850 Msa1024480:intron 25.0%
! GAATTTATCTGTCAATCATT+AGG + chr7_1:53850144-53850163 None:intergenic 25.0%
! AAAAATAGCAAACCAATTGT+AGG + chr7_1:53850239-53850258 None:intergenic 25.0%
!! AAGTCTAGGTATACTATTTT+AGG + chr7_1:53850409-53850428 None:intergenic 25.0%
! AACAAAACTTATCAAAGTCT+AGG + chr7_1:53850423-53850442 None:intergenic 25.0%
! AATTAAAGACCACAAATCAA+TGG + chr7_1:53850632-53850651 None:intergenic 25.0%
!!! ATTTAATTAAGTGGTTTGGT+TGG - chr7_1:53850759-53850778 Msa1024480:intron 25.0%
! ATCAAATTTCACTACTTACA+TGG + chr7_1:53851127-53851146 None:intergenic 25.0%
! TACTTAACCAAAAACACAAT+CGG + chr7_1:53851270-53851289 None:intergenic 25.0%
GAACCAAACAACACAAATTT+AGG + chr7_1:53847789-53847808 None:intergenic 30.0%
CAATACAATCATTATGGTGA+AGG - chr7_1:53847819-53847838 Msa1024480:three_prime_UTR 30.0%
CACACACAATTATGAGATAT+TGG + chr7_1:53848043-53848062 None:intergenic 30.0%
!! TGTTCATTGCCTTTTATTTG+TGG + chr7_1:53848128-53848147 None:intergenic 30.0%
AGTAGACACTAAAGAATACA+AGG + chr7_1:53848295-53848314 None:intergenic 30.0%
ACATGTTAAGGAATCCAAAA+TGG - chr7_1:53848387-53848406 Msa1024480:CDS 30.0%
CATGTTAAGGAATCCAAAAT+GGG - chr7_1:53848388-53848407 Msa1024480:CDS 30.0%
TTCATATATACAAGACAGCA+GGG + chr7_1:53848748-53848767 None:intergenic 30.0%
AGTTACTGATAGTTGATTAG+TGG + chr7_1:53849036-53849055 None:intergenic 30.0%
! TATAAGACTTGGTACCTATT+AGG + chr7_1:53849181-53849200 None:intergenic 30.0%
ACCTACATCAAATCAATGTT+GGG + chr7_1:53849285-53849304 None:intergenic 30.0%
AACCTACATCAAATCAATGT+TGG + chr7_1:53849286-53849305 None:intergenic 30.0%
!!! TGTAGGTTGATGTAATTTTG+CGG - chr7_1:53849298-53849317 Msa1024480:CDS 30.0%
! TGTGGATGATATTTTTCCTA+AGG - chr7_1:53849359-53849378 Msa1024480:intron 30.0%
AATCGGATATTCAATACCTT+AGG + chr7_1:53849378-53849397 None:intergenic 30.0%
! TTTTCTATGTATTCCTCCAA+TGG + chr7_1:53849805-53849824 None:intergenic 30.0%
! TAATTTTATGTGGTTTCGGA+AGG + chr7_1:53850019-53850038 None:intergenic 30.0%
CAACATGTAATACCTACAAT+TGG - chr7_1:53850224-53850243 Msa1024480:intron 30.0%
AATGAATCCAGTGATGAATT+TGG - chr7_1:53850526-53850545 Msa1024480:intron 30.0%
ATGAATCCAGTGATGAATTT+GGG - chr7_1:53850527-53850546 Msa1024480:intron 30.0%
TAATTCAGAGAAGAGAAGAT+TGG - chr7_1:53850647-53850666 Msa1024480:intron 30.0%
GGTGTCAAAGGAAATAATTA+AGG - chr7_1:53850825-53850844 Msa1024480:intron 30.0%
ATTGTCTTCCAATATAGACT+TGG + chr7_1:53850874-53850893 None:intergenic 30.0%
CTTAAGTTAAGCCATATGTT+GGG - chr7_1:53851157-53851176 Msa1024480:CDS 30.0%
AGATTGAAGACTACCATATT+AGG + chr7_1:53851183-53851202 None:intergenic 30.0%
ATAATTAGGTAGGAGCAATG+AGG - chr7_1:53847763-53847782 Msa1024480:three_prime_UTR 35.0%
! AGGCCTAAATTTGTGTTGTT+TGG - chr7_1:53847783-53847802 Msa1024480:three_prime_UTR 35.0%
ACAATCATTATGGTGAAGGT+TGG - chr7_1:53847823-53847842 Msa1024480:three_prime_UTR 35.0%
CAATCATTATGGTGAAGGTT+GGG - chr7_1:53847824-53847843 Msa1024480:three_prime_UTR 35.0%
AATCATTATGGTGAAGGTTG+GGG - chr7_1:53847825-53847844 Msa1024480:three_prime_UTR 35.0%
AAAAGAGATGGACGTTACTA+CGG + chr7_1:53847904-53847923 None:intergenic 35.0%
GCTAACTCAACTTGAAATGT+CGG - chr7_1:53847983-53848002 Msa1024480:three_prime_UTR 35.0%
TGAAATGTCGGTATTTACGT+TGG - chr7_1:53847995-53848014 Msa1024480:three_prime_UTR 35.0%
TTGTGTGTGAGAGATTTAAG+TGG - chr7_1:53848054-53848073 Msa1024480:CDS 35.0%
TGTTAATGAAGTTCGACCAA+TGG - chr7_1:53848157-53848176 Msa1024480:CDS 35.0%
GAATACAAGGTACAATTCAG+AGG + chr7_1:53848282-53848301 None:intergenic 35.0%
TGATGTTAACTTATGCCCTA+AGG - chr7_1:53848362-53848381 Msa1024480:CDS 35.0%
GATGTTAACTTATGCCCTAA+GGG - chr7_1:53848363-53848382 Msa1024480:CDS 35.0%
! CAATGCAAAATTGCCCATTT+TGG + chr7_1:53848404-53848423 None:intergenic 35.0%
! CAAAATGGGCAATTTTGCAT+TGG - chr7_1:53848402-53848421 Msa1024480:CDS 35.0%
TCAAGGACACCAAAAATCTT+AGG - chr7_1:53848717-53848736 Msa1024480:intron 35.0%
CAAGGACACCAAAAATCTTA+GGG - chr7_1:53848718-53848737 Msa1024480:intron 35.0%
GTTCATATATACAAGACAGC+AGG + chr7_1:53848749-53848768 None:intergenic 35.0%
GAAACATGTAACTTCATGTC+AGG + chr7_1:53848819-53848838 None:intergenic 35.0%
AATTTGTATGAGATCTGGGT+TGG + chr7_1:53849000-53849019 None:intergenic 35.0%
TAAGACCTCCAATCTTAAGT+GGG + chr7_1:53849104-53849123 None:intergenic 35.0%
TTAAGACCTCCAATCTTAAG+TGG + chr7_1:53849105-53849124 None:intergenic 35.0%
ATTGGGGAGAAAAATTGTTG+GGG + chr7_1:53849151-53849170 None:intergenic 35.0%
CATTGGGGAGAAAAATTGTT+GGG + chr7_1:53849152-53849171 None:intergenic 35.0%
TCATTGGGGAGAAAAATTGT+TGG + chr7_1:53849153-53849172 None:intergenic 35.0%
! AACAATTTTTCTCCCCAATG+AGG - chr7_1:53849152-53849171 Msa1024480:intron 35.0%
! ACAATTTTTCTCCCCAATGA+GGG - chr7_1:53849153-53849172 Msa1024480:intron 35.0%
!! ACCCAACATTGATTTGATGT+AGG - chr7_1:53849281-53849300 Msa1024480:CDS 35.0%
!!! GTAGGTTGATGTAATTTTGC+GGG - chr7_1:53849299-53849318 Msa1024480:CDS 35.0%
!!! TAGGTTGATGTAATTTTGCG+GGG - chr7_1:53849300-53849319 Msa1024480:CDS 35.0%
!! AGGTATTGAATATCCGATTG+TGG - chr7_1:53849379-53849398 Msa1024480:intron 35.0%
!! TACAAGAAGAGTACCACAAT+CGG + chr7_1:53849395-53849414 None:intergenic 35.0%
ATGATTGACCCTTGTGATAT+TGG - chr7_1:53849665-53849684 Msa1024480:CDS 35.0%
AGAGATGACCAATATCACAA+GGG + chr7_1:53849676-53849695 None:intergenic 35.0%
TAGAGATGACCAATATCACA+AGG + chr7_1:53849677-53849696 None:intergenic 35.0%
TTCGACTACACCAATATTTG+AGG + chr7_1:53849932-53849951 None:intergenic 35.0%
AGGAATATAAGTCGAGTCTT+CGG + chr7_1:53850168-53850187 None:intergenic 35.0%
ATGAATTTGGGAAAGCAGTA+AGG - chr7_1:53850539-53850558 Msa1024480:intron 35.0%
TTTACAGATGTGTGATGCTA+TGG - chr7_1:53850597-53850616 Msa1024480:intron 35.0%
!! AAATCAAGGCCATTGATTTG+TGG - chr7_1:53850620-53850639 Msa1024480:intron 35.0%
ACTGGAAACCAAGTCTATAT+TGG - chr7_1:53850863-53850882 Msa1024480:intron 35.0%
AAGACAATGCCAGTTGAATT+TGG - chr7_1:53850886-53850905 Msa1024480:intron 35.0%
GAATCTTCTCCAAATTCAAC+TGG + chr7_1:53850898-53850917 None:intergenic 35.0%
TTAATAGTTGACGTTCCATC+AGG + chr7_1:53850940-53850959 None:intergenic 35.0%
AGACTTATGTCCCAAATTCA+AGG - chr7_1:53851007-53851026 Msa1024480:intron 35.0%
GCTTAAGTTAAGCCATATGT+TGG - chr7_1:53851156-53851175 Msa1024480:CDS 35.0%
!! TTTGACACCGATTGTGTTTT+TGG - chr7_1:53851260-53851279 Msa1024480:five_prime_UTR 35.0%
GACGTTACTACGGTTTAAAG+AGG + chr7_1:53847894-53847913 None:intergenic 40.0%
GCTAAGTATAGATCCCTTTG+TGG - chr7_1:53847951-53847970 Msa1024480:three_prime_UTR 40.0%
!! TCAAGTTGAGTTAGCCCTTA+CGG + chr7_1:53847978-53847997 None:intergenic 40.0%
TTAGTGTCTACTGTCTTGCA+AGG - chr7_1:53848303-53848322 Msa1024480:intron 40.0%
TAGTGTCTACTGTCTTGCAA+GGG - chr7_1:53848304-53848323 Msa1024480:intron 40.0%
!! CGAGGGCACCAAAATTATTA+GGG - chr7_1:53848339-53848358 Msa1024480:intron 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr7_1:53848380-53848399 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG + chr7_1:53848381-53848400 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG + chr7_1:53848512-53848531 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr7_1:53848513-53848532 None:intergenic 40.0%
TATATACAAGACAGCAGGGT+CGG + chr7_1:53848744-53848763 None:intergenic 40.0%
TCATTGAGACAAGGCTAGAA+GGG + chr7_1:53848795-53848814 None:intergenic 40.0%
TTCATTGAGACAAGGCTAGA+AGG + chr7_1:53848796-53848815 None:intergenic 40.0%
ATGTCAGGTTCATTGAGACA+AGG + chr7_1:53848804-53848823 None:intergenic 40.0%
TTCTCTTTCTCAACGAGCAT+TGG - chr7_1:53848836-53848855 Msa1024480:CDS 40.0%
ACCTATTAGGTACCCTCATT+GGG + chr7_1:53849168-53849187 None:intergenic 40.0%
TACCTATTAGGTACCCTCAT+TGG + chr7_1:53849169-53849188 None:intergenic 40.0%
AAGTACACAATCGCTAATGC+TGG + chr7_1:53849730-53849749 None:intergenic 40.0%
GCATTAGCGATTGTGTACTT+TGG - chr7_1:53849730-53849749 Msa1024480:intron 40.0%
TTAGCGATTGTGTACTTTGG+TGG - chr7_1:53849733-53849752 Msa1024480:intron 40.0%
TATTCCTCCAATGGAACATG+AGG + chr7_1:53849796-53849815 None:intergenic 40.0%
TCTATTTGCTCGTCACTGAT+GGG + chr7_1:53850201-53850220 None:intergenic 40.0%
TTCTATTTGCTCGTCACTGA+TGG + chr7_1:53850202-53850221 None:intergenic 40.0%
ATCAGTGACGAGCAAATAGA+AGG - chr7_1:53850201-53850220 Msa1024480:intron 40.0%
TGCTTTCCCAAATTCATCAC+TGG + chr7_1:53850536-53850555 None:intergenic 40.0%
GTGTGATGCTATGGAAATCA+AGG - chr7_1:53850606-53850625 Msa1024480:intron 40.0%
TCAGAGAAGAGAAGATTGGA+AGG - chr7_1:53850651-53850670 Msa1024480:intron 40.0%
! GTTTGGTTGGTTCTTAGTGA+TGG - chr7_1:53850772-53850791 Msa1024480:intron 40.0%
TCAGGATGAAGTGGATCATA+TGG + chr7_1:53850922-53850941 None:intergenic 40.0%
TATGATCCACTTCATCCTGA+TGG - chr7_1:53850922-53850941 Msa1024480:intron 40.0%
TCCCAAATTCAAGGATCCTT+AGG - chr7_1:53851016-53851035 Msa1024480:intron 40.0%
CCCTAAGGATCCTTGAATTT+GGG + chr7_1:53851020-53851039 None:intergenic 40.0%
CCCAAATTCAAGGATCCTTA+GGG - chr7_1:53851017-53851036 Msa1024480:intron 40.0%
TCCCTAAGGATCCTTGAATT+TGG + chr7_1:53851021-53851040 None:intergenic 40.0%
GAAATGTGCCTAGGGAAATA+TGG - chr7_1:53851039-53851058 Msa1024480:intron 40.0%
GAAGACTACCATATTTCCCT+AGG + chr7_1:53851050-53851069 None:intergenic 40.0%
ACCATATTAGGCCCAACATA+TGG + chr7_1:53851171-53851190 None:intergenic 40.0%
GCTACTCTTGCTCACTTGTA+CGG - chr7_1:53847849-53847868 Msa1024480:three_prime_UTR 45.0%
!! GCGAGGGCACCAAAATTATT+AGG - chr7_1:53848338-53848357 Msa1024480:intron 45.0%
CTTAACATGTGTGCCCTTGA+GGG - chr7_1:53848496-53848515 Msa1024480:intron 45.0%
! TGTATGAGATCTGGGTTGGA+GGG + chr7_1:53848996-53849015 None:intergenic 45.0%
! TTGTATGAGATCTGGGTTGG+AGG + chr7_1:53848997-53849016 None:intergenic 45.0%
GTTTGGGTCCCACTTAAGAT+TGG - chr7_1:53849093-53849112 Msa1024480:intron 45.0%
! TGTTGGGGTCTTATAAGACC+CGG + chr7_1:53849136-53849155 None:intergenic 45.0%
CCTATTAGGTACCCTCATTG+GGG + chr7_1:53849167-53849186 None:intergenic 45.0%
TTCCCGTGAGCATTCACAAT+GGG + chr7_1:53849217-53849236 None:intergenic 45.0%
ATTCCCGTGAGCATTCACAA+TGG + chr7_1:53849218-53849237 None:intergenic 45.0%
! GATACGCTGGTTGGAATTCA+AGG - chr7_1:53849322-53849341 Msa1024480:intron 45.0%
TGGTTGCTCTTGTTGCTCAA+TGG + chr7_1:53849710-53849729 None:intergenic 45.0%
TCTCATCTTCCACATCCAAG+TGG - chr7_1:53849763-53849782 Msa1024480:intron 45.0%
TCTTGGTCCTCATGTTCCAT+TGG - chr7_1:53849786-53849805 Msa1024480:intron 45.0%
TGGAGTTCATTTCTCTGCTG+AGG - chr7_1:53850792-53850811 Msa1024480:intron 45.0%
GGAGTTCATTTCTCTGCTGA+GGG - chr7_1:53850793-53850812 Msa1024480:intron 45.0%
GAGTTCATTTCTCTGCTGAG+GGG - chr7_1:53850794-53850813 Msa1024480:intron 45.0%
AGGTCATCAAAGAAGCAGAC+TGG - chr7_1:53850845-53850864 Msa1024480:intron 45.0%
GTCATGTGGGAATGGAACAT+TGG + chr7_1:53850968-53850987 None:intergenic 45.0%
ATTCCCACATGACGAGGATT+GGG - chr7_1:53850975-53850994 Msa1024480:intron 45.0%
ATCCTTAGGGAAATGTGCCT+AGG - chr7_1:53851030-53851049 Msa1024480:intron 45.0%
TCCTTAGGGAAATGTGCCTA+GGG - chr7_1:53851031-53851050 Msa1024480:intron 45.0%
GGATGATCATGACTTGATCG+TGG - chr7_1:53851094-53851113 Msa1024480:intron 45.0%
GCCATATGTTGGGCCTAATA+TGG - chr7_1:53851167-53851186 Msa1024480:CDS 45.0%
!! ATTAAAAAATTAAAATGTAA+GGG + chr7_1:53849064-53849083 None:intergenic 5.0%
!! TATTAAAAAATTAAAATGTA+AGG + chr7_1:53849065-53849084 None:intergenic 5.0%
!!! TTTTTAATATTAAAAAAGTT+TGG - chr7_1:53849076-53849095 Msa1024480:intron 5.0%
!!! TTTTAATATTAAAAAAGTTT+GGG - chr7_1:53849077-53849096 Msa1024480:intron 5.0%
TGCTCACTTGTACGGTCGTA+AGG - chr7_1:53847857-53847876 Msa1024480:three_prime_UTR 50.0%
AGATCCCTTTGTGGTCCGTA+AGG - chr7_1:53847960-53847979 Msa1024480:three_prime_UTR 50.0%
GATCCCTTTGTGGTCCGTAA+GGG - chr7_1:53847961-53847980 Msa1024480:three_prime_UTR 50.0%
TAGCCCTTACGGACCACAAA+GGG + chr7_1:53847967-53847986 None:intergenic 50.0%
TTAGCCCTTACGGACCACAA+AGG + chr7_1:53847968-53847987 None:intergenic 50.0%
CTACTTCTGCGACTATGGAG+CGG - chr7_1:53848183-53848202 Msa1024480:CDS 50.0%
TGTCTACTGTCTTGCAAGGG+TGG - chr7_1:53848307-53848326 Msa1024480:intron 50.0%
! TGCCCTAAGGGCACATGTTA+AGG - chr7_1:53848375-53848394 Msa1024480:CDS 50.0%
! CCTCAAGGGCACACATGTTA+AGG + chr7_1:53848498-53848517 None:intergenic 50.0%
CCTTAACATGTGTGCCCTTG+AGG - chr7_1:53848495-53848514 Msa1024480:intron 50.0%
! AGGGTCGGCCCTAAGATTTT+TGG + chr7_1:53848729-53848748 None:intergenic 50.0%
TGGGTCCCACTTAAGATTGG+AGG - chr7_1:53849096-53849115 Msa1024480:intron 50.0%
GGAGGTCTTAAGTAAGACCC+CGG - chr7_1:53849114-53849133 Msa1024480:intron 50.0%
GAGGTCTTAAGTAAGACCCC+GGG - chr7_1:53849115-53849134 Msa1024480:intron 50.0%
! TTGGGGTCTTATAAGACCCG+GGG + chr7_1:53849134-53849153 None:intergenic 50.0%
! GTTGGGGTCTTATAAGACCC+GGG + chr7_1:53849135-53849154 None:intergenic 50.0%
!! CCCCAATGAGGGTACCTAAT+AGG - chr7_1:53849164-53849183 Msa1024480:intron 50.0%
TGCCCCATTGTGAATGCTCA+CGG - chr7_1:53849211-53849230 Msa1024480:CDS 50.0%
TCCCGTGAGCATTCACAATG+GGG + chr7_1:53849216-53849235 None:intergenic 50.0%
! GTAATTTTGCGGGGATACGC+TGG - chr7_1:53849309-53849328 Msa1024480:CDS 50.0%
AAGGCGTGGTCTACAAGTTG+TGG - chr7_1:53849341-53849360 Msa1024480:intron 50.0%
CTTCCACATCCAAGTGGTCT+TGG - chr7_1:53849769-53849788 Msa1024480:intron 50.0%
ACATGAGGACCAAGACCACT+TGG + chr7_1:53849781-53849800 None:intergenic 50.0%
TGGTCCTCATGTTCCATTGG+AGG - chr7_1:53849789-53849808 Msa1024480:intron 50.0%
ATTTGCTCGTCACTGATGGG+AGG + chr7_1:53850198-53850217 None:intergenic 50.0%
! GGGGAGTGAAATGGTGTCAA+AGG - chr7_1:53850813-53850832 Msa1024480:intron 50.0%
GACGTTCCATCAGGATGAAG+TGG + chr7_1:53850931-53850950 None:intergenic 50.0%
TGTTCCATTCCCACATGACG+AGG - chr7_1:53850969-53850988 Msa1024480:intron 50.0%
CAATCCTCGTCATGTGGGAA+TGG + chr7_1:53850976-53850995 None:intergenic 50.0%
CATTCCCACATGACGAGGAT+TGG - chr7_1:53850974-53850993 Msa1024480:intron 50.0%
ACTCCCAATCCTCGTCATGT+GGG + chr7_1:53850981-53851000 None:intergenic 50.0%
ACATGACGAGGATTGGGAGT+GGG - chr7_1:53850981-53851000 Msa1024480:intron 50.0%
TCCCTAGGCACATTTCCCTA+AGG + chr7_1:53851035-53851054 None:intergenic 50.0%
GTCGCAGAAGTAGGCACCAT+TGG + chr7_1:53848176-53848195 None:intergenic 55.0%
GGTGCCTACTTCTGCGACTA+TGG - chr7_1:53848178-53848197 Msa1024480:CDS 55.0%
CGCTCCATAGTCGCAGAAGT+AGG + chr7_1:53848185-53848204 None:intergenic 55.0%
GCCCCATTGTGAATGCTCAC+GGG - chr7_1:53849212-53849231 Msa1024480:CDS 55.0%
! TTTTGCGGGGATACGCTGGT+TGG - chr7_1:53849313-53849332 Msa1024480:intron 55.0%
GCTGGTTGGAATTCAAGGCG+TGG - chr7_1:53849327-53849346 Msa1024480:intron 55.0%
GGACCAAGACCACTTGGATG+TGG + chr7_1:53849775-53849794 None:intergenic 55.0%
CACTGATGGGAGGACAACTG+AGG + chr7_1:53850188-53850207 None:intergenic 55.0%
CTCTGCTGAGGGGAGTGAAA+TGG - chr7_1:53850804-53850823 Msa1024480:intron 55.0%
CACTCCCAATCCTCGTCATG+TGG + chr7_1:53850982-53851001 None:intergenic 55.0%
CACATGACGAGGATTGGGAG+TGG - chr7_1:53850980-53850999 Msa1024480:intron 55.0%
TCTTGCAAGGGTGGCCCTGA+GGG - chr7_1:53848316-53848335 Msa1024480:intron 60.0%
!!! TTTTGGTGCCCTCGCCCTCA+GGG + chr7_1:53848333-53848352 None:intergenic 60.0%
!!! ATTTTGGTGCCCTCGCCCTC+AGG + chr7_1:53848334-53848353 None:intergenic 60.0%
GTCTTGCAAGGGTGGCCCTG+AGG - chr7_1:53848315-53848334 Msa1024480:intron 65.0%
AAGGGTGGCCCTGAGGGCGA+GGG - chr7_1:53848322-53848341 Msa1024480:intron 70.0%
CAAGGGTGGCCCTGAGGGCG+AGG - chr7_1:53848321-53848340 Msa1024480:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 53847732 53851299 53847732 ID=Msa1024480;Name=Msa1024480
chr7_1 mRNA 53847732 53851299 53847732 ID=Msa1024480-mRNA-1;Parent=Msa1024480;Name=Msa1024480-mRNA-1;_AED=0.23;_eAED=0.23;_QI=48|1|1|1|1|1|6|291|256
chr7_1 exon 53847732 53848242 53847732 ID=Msa1024480-mRNA-1:exon:10633;Parent=Msa1024480-mRNA-1
chr7_1 exon 53848345 53848494 53848345 ID=Msa1024480-mRNA-1:exon:10632;Parent=Msa1024480-mRNA-1
chr7_1 exon 53848802 53848875 53848802 ID=Msa1024480-mRNA-1:exon:10631;Parent=Msa1024480-mRNA-1
chr7_1 exon 53849179 53849328 53849179 ID=Msa1024480-mRNA-1:exon:10630;Parent=Msa1024480-mRNA-1
chr7_1 exon 53849651 53849728 53849651 ID=Msa1024480-mRNA-1:exon:10629;Parent=Msa1024480-mRNA-1
chr7_1 exon 53851153 53851299 53851153 ID=Msa1024480-mRNA-1:exon:10628;Parent=Msa1024480-mRNA-1
chr7_1 five_prime_UTR 53851252 53851299 53851252 ID=Msa1024480-mRNA-1:five_prime_utr;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53851153 53851251 53851153 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53849651 53849728 53849651 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53849179 53849328 53849179 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53848802 53848875 53848802 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53848345 53848494 53848345 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 CDS 53848023 53848242 53848023 ID=Msa1024480-mRNA-1:cds;Parent=Msa1024480-mRNA-1
chr7_1 three_prime_UTR 53847732 53848022 53847732 ID=Msa1024480-mRNA-1:three_prime_utr;Parent=Msa1024480-mRNA-1
Gene Sequence

>Msa1024480

ATGAGGCCTAAATTTGTGTTGTTTGGTTCTTCCATTGTTCAATACAATCATTATGGTGAAGGTTGGGGAGCTACTCTTGCTCACTTGTACGGTCGTAAGGTTGATGTAATTTTGCGGGGATACGCTGGTTGGAATTCAAGGCGTGGTCTACAAGTTGTGGATGATATTTTTCCTAAGAATACCATTGAGCAACAAGAGCAACCAGCATTAGCGATTGTGTACTTTGGTGGTAATGATTCTCATCTTCCACATCCAAGTGGTCTTGGTCCTCATGTTCCATTGGAGGAATACATAGAAAATATGAGGAACATTGCTAATTATCTAAAGATAAATTCACCGAAGACTCGACTTATATTCCTCAGTTGTCCTCCCATCAGTGACGAGCAAATAGAAGGCAACATTGATGAATTTGGGAAAGCAGTAAGGAGAAATGAAGTTCGTAAAATATATTCAGATGCACTTTTACAGATGTGTGATGCTATGGAAATCAAGGCCATTGATTTGTGGTCTTTAATTCAGAGAAGAGAAGATTGGAAGGAAGTTTGCTTCATTGATGGAGTTCATTTCTCTGCTGAGGGGAGTGAAATGGTGTCAAAGGAAATAATTAAGGTCATCAAAGAAGCAGACTGGAAACCAAGTCTATATTGGAAGACAATGCCAGTTGAATTTGGAGAAGATTCACCATATGATCCACTTCATCCTGATGGAACGTCAACTATTAATATCTCCAATGTTCCATTCCCACATGACGAGGATTGGGAGTGGGAGTAG

Protein sequence

>Msa1024480

MRPKFVLFGSSIVQYNHYGEGWGATLAHLYGRKVDVILRGYAGWNSRRGLQVVDDIFPKNTIEQQEQPALAIVYFGGNDSHLPHPSGLGPHVPLEEYIENMRNIANYLKINSPKTRLIFLSCPPISDEQIEGNIDEFGKAVRRNEVRKIYSDALLQMCDAMEIKAIDLWSLIQRREDWKEVCFIDGVHFSAEGSEMVSKEIIKVIKEADWKPSLYWKTMPVEFGEDSPYDPLHPDGTSTINISNVPFPHDEDWEWE*