Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453970 | XP_003600177.1 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 4.28e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453970 | sp|G7J032|PHBP_MEDTR | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 5.34e-109 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453970 | A0A396INQ3 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 2.04e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041270 | Msa0453970 | 0.809817 | 1.568535e-50 | -8.615850e-47 |
| Msa0059880 | Msa0453970 | 0.810598 | 1.064571e-50 | -8.615850e-47 |
| Msa0135740 | Msa0453970 | 0.816992 | 4.153335e-52 | -8.615850e-47 |
| Msa0150910 | Msa0453970 | 0.805237 | 1.470759e-49 | -8.615850e-47 |
| Msa0160580 | Msa0453970 | 0.806264 | 8.950500e-50 | -8.615850e-47 |
| Msa0396700 | Msa0453970 | 0.805644 | 1.208332e-49 | -8.615850e-47 |
| Msa0403720 | Msa0453970 | -0.810072 | 1.382617e-50 | -8.615850e-47 |
| Msa0409250 | Msa0453970 | 0.971743 | 1.204778e-133 | -8.615850e-47 |
| Msa0409490 | Msa0453970 | 0.813821 | 2.108477e-51 | -8.615850e-47 |
| Msa0453970 | Msa0456480 | -0.809030 | 2.313777e-50 | -8.615850e-47 |
| Msa0453970 | Msa0491800 | 0.812790 | 3.549916e-51 | -8.615850e-47 |
| Msa0453970 | Msa0532610 | 0.807071 | 6.046388e-50 | -8.615850e-47 |
| Msa0453970 | Msa0532670 | 0.806243 | 9.040935e-50 | -8.615850e-47 |
| Msa0453970 | Msa0532680 | 0.804319 | 2.287326e-49 | -8.615850e-47 |
| Msa0453970 | Msa0533510 | 0.807290 | 5.434120e-50 | -8.615850e-47 |
| Msa0453970 | Msa0538440 | 0.806297 | 8.808720e-50 | -8.615850e-47 |
| Msa0453970 | Msa0543740 | 0.801701 | 7.952107e-49 | -8.615850e-47 |
| Msa0453970 | Msa0547200 | 0.807689 | 4.471116e-50 | -8.615850e-47 |
| Msa0453970 | Msa0554660 | 0.801666 | 8.084629e-49 | -8.615850e-47 |
| Msa0453970 | Msa0589450 | 0.810219 | 1.285175e-50 | -8.615850e-47 |
| Msa0453970 | Msa0589720 | 0.804826 | 1.792337e-49 | -8.615850e-47 |
| Msa0453970 | Msa0589740 | 0.807359 | 5.252185e-50 | -8.615850e-47 |
| Msa0453970 | Msa0589750 | 0.809764 | 1.610327e-50 | -8.615850e-47 |
| Msa0453970 | Msa0594330 | 0.802046 | 6.755808e-49 | -8.615850e-47 |
| Msa0453970 | Msa0599600 | 0.801685 | 8.012658e-49 | -8.615850e-47 |
| Msa0453970 | Msa0601920 | 0.822728 | 2.028377e-53 | -8.615850e-47 |
| Msa0453970 | Msa0611950 | 0.800700 | 1.274314e-48 | -8.615850e-47 |
| Msa0453970 | Msa0623750 | 0.811293 | 7.526726e-51 | -8.615850e-47 |
| Msa0453970 | Msa0630850 | -0.819953 | 8.856699e-53 | -8.615850e-47 |
| Msa0453970 | Msa0643020 | 0.814988 | 1.163810e-51 | -8.615850e-47 |
| Msa0453970 | Msa0681880 | -0.805262 | 1.453441e-49 | -8.615850e-47 |
| Msa0453970 | Msa0682730 | 0.823452 | 1.374651e-53 | -8.615850e-47 |
| Msa0453970 | Msa0711230 | 0.805586 | 1.242997e-49 | -8.615850e-47 |
| Msa0453970 | Msa0711240 | 0.811965 | 5.377250e-51 | -8.615850e-47 |
| Msa0453970 | Msa0758150 | 0.801607 | 8.314735e-49 | -8.615850e-47 |
| Msa0453970 | Msa0776340 | 0.821464 | 3.981657e-53 | -8.615850e-47 |
| Msa0453970 | Msa0793060 | -0.819206 | 1.311777e-52 | -8.615850e-47 |
| Msa0453970 | Msa0817100 | 0.803863 | 2.845803e-49 | -8.615850e-47 |
| Msa0453970 | Msa0854380 | 0.805318 | 1.414170e-49 | -8.615850e-47 |
| Msa0453970 | Msa0890210 | 0.810194 | 1.300948e-50 | -8.615850e-47 |
| Msa0453970 | Msa0896920 | 0.860446 | 2.054727e-63 | -8.615850e-47 |
| Msa0453970 | Msa0902340 | 0.808340 | 3.250343e-50 | -8.615850e-47 |
| Msa0453970 | Msa0910570 | 0.802880 | 4.547979e-49 | -8.615850e-47 |
| Msa0453970 | Msa0932930 | 0.803428 | 3.502807e-49 | -8.615850e-47 |
| Msa0453970 | Msa0951060 | 0.817268 | 3.601663e-52 | -8.615850e-47 |
| Msa0453970 | Msa0962290 | 0.811285 | 7.558262e-51 | -8.615850e-47 |
| Msa0453970 | Msa0970790 | 0.807923 | 3.987513e-50 | -8.615850e-47 |
| Msa0453970 | Msa0985250 | 0.801640 | 8.186834e-49 | -8.615850e-47 |
| Msa0453970 | Msa0996980 | 0.837248 | 5.812569e-57 | -8.615850e-47 |
| Msa0453970 | Msa1003240 | 0.803540 | 3.320154e-49 | -8.615850e-47 |
| Msa0453970 | Msa1026050 | 0.802627 | 5.128460e-49 | -8.615850e-47 |
| Msa0453970 | Msa1046220 | 0.839619 | 1.421666e-57 | -8.615850e-47 |
| Msa0453970 | Msa1061670 | 0.804480 | 2.117130e-49 | -8.615850e-47 |
| Msa0453970 | Msa1061760 | 0.810606 | 1.060436e-50 | -8.615850e-47 |
| Msa0453970 | Msa1064940 | 0.800836 | 1.195253e-48 | -8.615850e-47 |
| Msa0453970 | Msa1069440 | -0.807627 | 4.609551e-50 | -8.615850e-47 |
| Msa0453970 | Msa1079610 | -0.813174 | 2.925256e-51 | -8.615850e-47 |
| Msa0453970 | Msa1083100 | 0.819335 | 1.225948e-52 | -8.615850e-47 |
| Msa0453970 | Msa1087380 | 0.825178 | 5.401372e-54 | -8.615850e-47 |
| Msa0453970 | Msa1100560 | 0.800101 | 1.687573e-48 | -8.615850e-47 |
| Msa0453970 | Msa1124440 | -0.809011 | 2.336427e-50 | -8.615850e-47 |
| Msa0453970 | Msa1138110 | 0.812932 | 3.305146e-51 | -8.615850e-47 |
| Msa0453970 | Msa1138600 | -0.815200 | 1.044009e-51 | -8.615850e-47 |
| Msa0453970 | Msa1165860 | 0.800195 | 1.614794e-48 | -8.615850e-47 |
| Msa0453970 | Msa1173290 | 0.806848 | 6.738133e-50 | -8.615850e-47 |
| Msa0453970 | Msa1194170 | 0.819087 | 1.396281e-52 | -8.615850e-47 |
| Msa0453970 | Msa1216370 | 0.811989 | 5.312015e-51 | -8.615850e-47 |
| Msa0453970 | Msa1221170 | 0.816013 | 6.880735e-52 | -8.615850e-47 |
| Msa0453970 | Msa1235760 | -0.800305 | 1.533611e-48 | -8.615850e-47 |
| Msa0453970 | Msa1235770 | -0.805073 | 1.591812e-49 | -8.615850e-47 |
| Msa0453970 | Msa1259560 | 0.812140 | 4.924842e-51 | -8.615850e-47 |
| Msa0453970 | Msa1265500 | 0.813459 | 2.533070e-51 | -8.615850e-47 |
| Msa0453970 | Msa1299280 | 0.810205 | 1.294045e-50 | -8.615850e-47 |
| Msa0453970 | Msa1302010 | 0.806903 | 6.561656e-50 | -8.615850e-47 |
| Msa0453970 | Msa1323030 | 0.800443 | 1.437644e-48 | -8.615850e-47 |
| Msa0453970 | Msa1323150 | 0.828554 | 8.426764e-55 | -8.615850e-47 |
| Msa0453970 | Msa1342400 | -0.806951 | 6.410775e-50 | -8.615850e-47 |
| Msa0453970 | Msa1361500 | 0.806614 | 7.552739e-50 | -8.615850e-47 |
| Msa0453970 | Msa1370930 | 0.820494 | 6.657521e-53 | -8.615850e-47 |
| Msa0453970 | Msa1373560 | 0.801307 | 9.579026e-49 | -8.615850e-47 |
| Msa0453970 | Msa1378950 | 0.813154 | 2.955233e-51 | -8.615850e-47 |
| Msa0453970 | Msa1396550 | 0.805434 | 1.337324e-49 | -8.615850e-47 |
| Msa0453970 | Msa1445780 | 0.814866 | 1.238745e-51 | -8.615850e-47 |
| Msa0453970 | Msa1452200 | -0.800377 | 1.482757e-48 | -8.615850e-47 |
| Msa0245660 | Msa0453970 | 0.801107 | 1.052390e-48 | -8.615850e-47 |
| Msa0266640 | Msa0453970 | 0.804199 | 2.422327e-49 | -8.615850e-47 |
| Msa0270460 | Msa0453970 | -0.808239 | 3.415304e-50 | -8.615850e-47 |
| Msa0274260 | Msa0453970 | 0.818542 | 1.856485e-52 | -8.615850e-47 |
| Msa0295520 | Msa0453970 | -0.803903 | 2.791199e-49 | -8.615850e-47 |
| Msa0356200 | Msa0453970 | 0.812841 | 3.461196e-51 | -8.615850e-47 |
| Msa0356250 | Msa0453970 | 0.809040 | 2.303060e-50 | -8.615850e-47 |
| Msa0356380 | Msa0453970 | 0.811631 | 6.356166e-51 | -8.615850e-47 |
| Msa0356410 | Msa0453970 | 0.813663 | 2.284062e-51 | -8.615850e-47 |
| Msa0360640 | Msa0453970 | 0.938313 | 8.267060e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453970 | MtrunA17_Chr3g0100191 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 3.93e-110 | 309 |
| Msa0453970 | MtrunA17_Chr3g0100201 | 59.615 | 156 | 62 | 1 | 1 | 156 | 1 | 155 | 1.35e-60 | 184 |
| Msa0453970 | MtrunA17_Chr4g0067841 | 31.126 | 151 | 99 | 3 | 5 | 153 | 6 | 153 | 1.53e-11 | 58.9 |
| Msa0453970 | MtrunA17_Chr4g0039921 | 30.928 | 97 | 67 | 0 | 26 | 122 | 27 | 123 | 3.13e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATCTTTCACAATATT+TGG | 0.180335 | 3_3:-44952996 | None:intergenic |
| AACAGAAAAGATAGAATAAA+TGG | 0.190403 | 3_3:-44953589 | None:intergenic |
| TGCTCTTGGTCCTTATTTCT+AGG | 0.239239 | 3_3:-44953634 | None:intergenic |
| CCCTACATTTAGTGTTGTTT+GGG | 0.266669 | 3_3:-44952913 | None:intergenic |
| ACCCTACATTTAGTGTTGTT+TGG | 0.267738 | 3_3:-44952914 | None:intergenic |
| ACCTCCCTTTGATAATTTAC+TGG | 0.269590 | 3_3:-44953281 | None:intergenic |
| ATGTAGGGTTGGAGGCTCTC+TGG | 0.280146 | 3_3:+44952928 | Msa0453970:CDS |
| ACTATTGAAACCTAGAAATA+AGG | 0.314161 | 3_3:+44953624 | Msa0453970:three_prime_UTR |
| TCTCTGATATTGCTGAGAAT+TGG | 0.334808 | 3_3:-44953400 | None:intergenic |
| ACAATATTTGGTAGAACCTT+TGG | 0.336066 | 3_3:-44952984 | None:intergenic |
| AATTGATATGAGAATCCTTT+TGG | 0.336608 | 3_3:+44953669 | Msa0453970:three_prime_UTR |
| GATGAGTTATCCCATACAAT+TGG | 0.363483 | 3_3:+44953317 | Msa0453970:CDS |
| ATTCTCATATCAATTGCTAA+TGG | 0.378304 | 3_3:-44953661 | None:intergenic |
| CCACTTGGAGCCCAATTGTA+TGG | 0.392253 | 3_3:-44953328 | None:intergenic |
| TTCTCATATCAATTGCTAAT+GGG | 0.422908 | 3_3:-44953660 | None:intergenic |
| TTGCTAATGGGTGTTGCTCT+TGG | 0.424252 | 3_3:-44953648 | None:intergenic |
| TGTAGGGTTGGAGGCTCTCT+GGG | 0.431104 | 3_3:+44952929 | Msa0453970:CDS |
| ATTGAAGGGGATGGAGGGGT+TGG | 0.471026 | 3_3:+44953023 | Msa0453970:CDS |
| ACATTGATGAGTCATGATAA+AGG | 0.485079 | 3_3:+44952881 | Msa0453970:exon |
| AAGTAATTGAAGGGGATGGA+GGG | 0.491464 | 3_3:+44953018 | Msa0453970:CDS |
| AAGATCAAGTTAAGGCCAAA+AGG | 0.494172 | 3_3:-44953684 | None:intergenic |
| AATATCAGAGAATAAAACTT+TGG | 0.496609 | 3_3:+44953412 | Msa0453970:CDS |
| GATAGCCTCCTTCAACCACT+TGG | 0.497730 | 3_3:-44953343 | None:intergenic |
| CAAGTAATTGAAGGGGATGG+AGG | 0.498103 | 3_3:+44953017 | Msa0453970:CDS |
| ATGAGTTATCCCATACAATT+GGG | 0.498688 | 3_3:+44953318 | Msa0453970:CDS |
| TAGAACCTTTGGAACAACTA+AGG | 0.509620 | 3_3:-44952973 | None:intergenic |
| TTGCCCAAGATAAAATAAAG+TGG | 0.515677 | 3_3:-44953510 | None:intergenic |
| AACACTAAATGTAGGGTTGG+AGG | 0.516628 | 3_3:+44952920 | Msa0453970:CDS |
| ACAGAAAAGATAGAATAAAT+GGG | 0.520286 | 3_3:-44953588 | None:intergenic |
| ATTGGGCTCCAAGTGGTTGA+AGG | 0.523194 | 3_3:+44953335 | Msa0453970:CDS |
| CCCAAACAACACTAAATGTA+GGG | 0.526439 | 3_3:+44952913 | Msa0453970:CDS |
| AACAACTAAGGTGATATCCT+TGG | 0.527317 | 3_3:-44952961 | None:intergenic |
| TATCTCCAGTAAATTATCAA+AGG | 0.528165 | 3_3:+44953276 | Msa0453970:CDS |
| ATCTCCAGTAAATTATCAAA+GGG | 0.531150 | 3_3:+44953277 | Msa0453970:CDS |
| TAAAGTGGACTCTGATGACT+TGG | 0.536618 | 3_3:-44953495 | None:intergenic |
| TATCACCTTAGTTGTTCCAA+AGG | 0.536797 | 3_3:+44952968 | Msa0453970:CDS |
| CACTTGGAGCCCAATTGTAT+GGG | 0.538605 | 3_3:-44953327 | None:intergenic |
| ACCCAAACAACACTAAATGT+AGG | 0.541086 | 3_3:+44952912 | Msa0453970:CDS |
| AACAACACTAAATGTAGGGT+TGG | 0.556486 | 3_3:+44952917 | Msa0453970:CDS |
| AGTAATTGAAGGGGATGGAG+GGG | 0.556600 | 3_3:+44953019 | Msa0453970:CDS |
| AAAGATGTGCAAGTAATTGA+AGG | 0.557421 | 3_3:+44953008 | Msa0453970:CDS |
| GAAGGAGGCTATCTCAATCA+AGG | 0.560280 | 3_3:+44953353 | Msa0453970:CDS |
| GTGCAAGTAATTGAAGGGGA+TGG | 0.570134 | 3_3:+44953014 | Msa0453970:CDS |
| GTGGACTCTGATGACTTGGT+AGG | 0.577302 | 3_3:-44953491 | None:intergenic |
| TCTCTGGGCTGCACAGTCCA+AGG | 0.592809 | 3_3:+44952944 | Msa0453970:CDS |
| AAGATGTGCAAGTAATTGAA+GGG | 0.598044 | 3_3:+44953009 | Msa0453970:CDS |
| TCCAGTAAATTATCAAAGGG+AGG | 0.626622 | 3_3:+44953280 | Msa0453970:CDS |
| GGGCTCCAAGTGGTTGAAGG+AGG | 0.646381 | 3_3:+44953338 | Msa0453970:CDS |
| CCATACAATTGGGCTCCAAG+TGG | 0.700462 | 3_3:+44953328 | Msa0453970:CDS |
| AGATGTGCAAGTAATTGAAG+GGG | 0.714548 | 3_3:+44953010 | Msa0453970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATTATTATATCTT+AGG | + | chr3_3:44953251-44953270 | Msa0453970:intron | 10.0% |
| !! | TAATCAAATTATTATATCTT+AGG | + | chr3_3:44953251-44953270 | Msa0453970:intron | 10.0% |
| !! | CAAAAAATTAAAGATGAGTT+TGG | - | chr3_3:44953051-44953070 | None:intergenic | 20.0% |
| !! | AATATCAGAGAATAAAACTT+TGG | + | chr3_3:44953412-44953431 | Msa0453970:CDS | 20.0% |
| !! | CTAGAAAAATTTCTGTTAAA+TGG | + | chr3_3:44953533-44953552 | Msa0453970:CDS | 20.0% |
| !! | ACAGAAAAGATAGAATAAAT+GGG | - | chr3_3:44953591-44953610 | None:intergenic | 20.0% |
| !! | AACAGAAAAGATAGAATAAA+TGG | - | chr3_3:44953592-44953611 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAGATGAGTT+TGG | - | chr3_3:44953051-44953070 | None:intergenic | 20.0% |
| !! | AATATCAGAGAATAAAACTT+TGG | + | chr3_3:44953412-44953431 | Msa0453970:CDS | 20.0% |
| !! | CTAGAAAAATTTCTGTTAAA+TGG | + | chr3_3:44953533-44953552 | Msa0453970:CDS | 20.0% |
| !! | ACAGAAAAGATAGAATAAAT+GGG | - | chr3_3:44953591-44953610 | None:intergenic | 20.0% |
| !! | AACAGAAAAGATAGAATAAA+TGG | - | chr3_3:44953592-44953611 | None:intergenic | 20.0% |
| ! | TATCTCCAGTAAATTATCAA+AGG | + | chr3_3:44953276-44953295 | Msa0453970:CDS | 25.0% |
| ! | ATCTCCAGTAAATTATCAAA+GGG | + | chr3_3:44953277-44953296 | Msa0453970:CDS | 25.0% |
| !!! | AGTCCACTTTATTTTATCTT+GGG | + | chr3_3:44953507-44953526 | Msa0453970:CDS | 25.0% |
| ! | ACTATTGAAACCTAGAAATA+AGG | + | chr3_3:44953624-44953643 | Msa0453970:three_prime_UTR | 25.0% |
| ! | TTCTCATATCAATTGCTAAT+GGG | - | chr3_3:44953663-44953682 | None:intergenic | 25.0% |
| ! | ATTCTCATATCAATTGCTAA+TGG | - | chr3_3:44953664-44953683 | None:intergenic | 25.0% |
| !! | AATTGATATGAGAATCCTTT+TGG | + | chr3_3:44953669-44953688 | Msa0453970:three_prime_UTR | 25.0% |
| ! | TATCTCCAGTAAATTATCAA+AGG | + | chr3_3:44953276-44953295 | Msa0453970:CDS | 25.0% |
| ! | ATCTCCAGTAAATTATCAAA+GGG | + | chr3_3:44953277-44953296 | Msa0453970:CDS | 25.0% |
| !!! | AGTCCACTTTATTTTATCTT+GGG | + | chr3_3:44953507-44953526 | Msa0453970:CDS | 25.0% |
| ! | ACTATTGAAACCTAGAAATA+AGG | + | chr3_3:44953624-44953643 | Msa0453970:three_prime_UTR | 25.0% |
| ! | TTCTCATATCAATTGCTAAT+GGG | - | chr3_3:44953663-44953682 | None:intergenic | 25.0% |
| ! | ATTCTCATATCAATTGCTAA+TGG | - | chr3_3:44953664-44953683 | None:intergenic | 25.0% |
| !! | AATTGATATGAGAATCCTTT+TGG | + | chr3_3:44953669-44953688 | Msa0453970:three_prime_UTR | 25.0% |
| ACATTGATGAGTCATGATAA+AGG | + | chr3_3:44952881-44952900 | Msa0453970:exon | 30.0% | |
| ACAATATTTGGTAGAACCTT+TGG | - | chr3_3:44952987-44953006 | None:intergenic | 30.0% | |
| TGCACATCTTTCACAATATT+TGG | - | chr3_3:44952999-44953018 | None:intergenic | 30.0% | |
| AAAGATGTGCAAGTAATTGA+AGG | + | chr3_3:44953008-44953027 | Msa0453970:CDS | 30.0% | |
| AAGATGTGCAAGTAATTGAA+GGG | + | chr3_3:44953009-44953028 | Msa0453970:CDS | 30.0% | |
| !!! | CTCATCTTTAATTTTTTGCC+TGG | + | chr3_3:44953053-44953072 | Msa0453970:CDS | 30.0% |
| ! | CTATTTTACAACGTGTTTCA+GGG | - | chr3_3:44953149-44953168 | None:intergenic | 30.0% |
| ! | ACTATTTTACAACGTGTTTC+AGG | - | chr3_3:44953150-44953169 | None:intergenic | 30.0% |
| ATGAGTTATCCCATACAATT+GGG | + | chr3_3:44953318-44953337 | Msa0453970:CDS | 30.0% | |
| !! | GTTTGACTTTTTCTTCTATG+AGG | - | chr3_3:44953472-44953491 | None:intergenic | 30.0% |
| !!! | GAGTCCACTTTATTTTATCT+TGG | + | chr3_3:44953506-44953525 | Msa0453970:CDS | 30.0% |
| TTGCCCAAGATAAAATAAAG+TGG | - | chr3_3:44953513-44953532 | None:intergenic | 30.0% | |
| TTTATCATGACTCATCAATG+TGG | - | chr3_3:44952882-44952901 | None:intergenic | 30.0% | |
| ACATTGATGAGTCATGATAA+AGG | + | chr3_3:44952881-44952900 | Msa0453970:exon | 30.0% | |
| ACAATATTTGGTAGAACCTT+TGG | - | chr3_3:44952987-44953006 | None:intergenic | 30.0% | |
| TGCACATCTTTCACAATATT+TGG | - | chr3_3:44952999-44953018 | None:intergenic | 30.0% | |
| AAAGATGTGCAAGTAATTGA+AGG | + | chr3_3:44953008-44953027 | Msa0453970:CDS | 30.0% | |
| AAGATGTGCAAGTAATTGAA+GGG | + | chr3_3:44953009-44953028 | Msa0453970:CDS | 30.0% | |
| !!! | CTCATCTTTAATTTTTTGCC+TGG | + | chr3_3:44953053-44953072 | Msa0453970:CDS | 30.0% |
| ! | CTATTTTACAACGTGTTTCA+GGG | - | chr3_3:44953149-44953168 | None:intergenic | 30.0% |
| ! | ACTATTTTACAACGTGTTTC+AGG | - | chr3_3:44953150-44953169 | None:intergenic | 30.0% |
| ATGAGTTATCCCATACAATT+GGG | + | chr3_3:44953318-44953337 | Msa0453970:CDS | 30.0% | |
| !! | GTTTGACTTTTTCTTCTATG+AGG | - | chr3_3:44953472-44953491 | None:intergenic | 30.0% |
| !!! | GAGTCCACTTTATTTTATCT+TGG | + | chr3_3:44953506-44953525 | Msa0453970:CDS | 30.0% |
| TTGCCCAAGATAAAATAAAG+TGG | - | chr3_3:44953513-44953532 | None:intergenic | 30.0% | |
| ACCCAAACAACACTAAATGT+AGG | + | chr3_3:44952912-44952931 | Msa0453970:CDS | 35.0% | |
| !! | CCCTACATTTAGTGTTGTTT+GGG | - | chr3_3:44952916-44952935 | None:intergenic | 35.0% |
| CCCAAACAACACTAAATGTA+GGG | + | chr3_3:44952913-44952932 | Msa0453970:CDS | 35.0% | |
| ! | ACCCTACATTTAGTGTTGTT+TGG | - | chr3_3:44952917-44952936 | None:intergenic | 35.0% |
| AACAACACTAAATGTAGGGT+TGG | + | chr3_3:44952917-44952936 | Msa0453970:CDS | 35.0% | |
| AACAACTAAGGTGATATCCT+TGG | - | chr3_3:44952964-44952983 | None:intergenic | 35.0% | |
| TATCACCTTAGTTGTTCCAA+AGG | + | chr3_3:44952968-44952987 | Msa0453970:CDS | 35.0% | |
| !! | TAGAACCTTTGGAACAACTA+AGG | - | chr3_3:44952976-44952995 | None:intergenic | 35.0% |
| AGATGTGCAAGTAATTGAAG+GGG | + | chr3_3:44953010-44953029 | Msa0453970:CDS | 35.0% | |
| TGCAATCAAAATCTCGATGA+GGG | - | chr3_3:44953108-44953127 | None:intergenic | 35.0% | |
| ATGCAATCAAAATCTCGATG+AGG | - | chr3_3:44953109-44953128 | None:intergenic | 35.0% | |
| !!! | CATCGAGATTTTGATTGCAT+CGG | + | chr3_3:44953109-44953128 | Msa0453970:intron | 35.0% |
| TCCAGTAAATTATCAAAGGG+AGG | + | chr3_3:44953280-44953299 | Msa0453970:CDS | 35.0% | |
| ! | ACCTCCCTTTGATAATTTAC+TGG | - | chr3_3:44953284-44953303 | None:intergenic | 35.0% |
| GATGAGTTATCCCATACAAT+TGG | + | chr3_3:44953317-44953336 | Msa0453970:CDS | 35.0% | |
| TCTCTGATATTGCTGAGAAT+TGG | - | chr3_3:44953403-44953422 | None:intergenic | 35.0% | |
| ACCCAAACAACACTAAATGT+AGG | + | chr3_3:44952912-44952931 | Msa0453970:CDS | 35.0% | |
| !! | CCCTACATTTAGTGTTGTTT+GGG | - | chr3_3:44952916-44952935 | None:intergenic | 35.0% |
| CCCAAACAACACTAAATGTA+GGG | + | chr3_3:44952913-44952932 | Msa0453970:CDS | 35.0% | |
| ! | ACCCTACATTTAGTGTTGTT+TGG | - | chr3_3:44952917-44952936 | None:intergenic | 35.0% |
| AACAACACTAAATGTAGGGT+TGG | + | chr3_3:44952917-44952936 | Msa0453970:CDS | 35.0% | |
| AACAACTAAGGTGATATCCT+TGG | - | chr3_3:44952964-44952983 | None:intergenic | 35.0% | |
| TATCACCTTAGTTGTTCCAA+AGG | + | chr3_3:44952968-44952987 | Msa0453970:CDS | 35.0% | |
| !! | TAGAACCTTTGGAACAACTA+AGG | - | chr3_3:44952976-44952995 | None:intergenic | 35.0% |
| AGATGTGCAAGTAATTGAAG+GGG | + | chr3_3:44953010-44953029 | Msa0453970:CDS | 35.0% | |
| TGCAATCAAAATCTCGATGA+GGG | - | chr3_3:44953108-44953127 | None:intergenic | 35.0% | |
| ATGCAATCAAAATCTCGATG+AGG | - | chr3_3:44953109-44953128 | None:intergenic | 35.0% | |
| !!! | CATCGAGATTTTGATTGCAT+CGG | + | chr3_3:44953109-44953128 | Msa0453970:intron | 35.0% |
| TCCAGTAAATTATCAAAGGG+AGG | + | chr3_3:44953280-44953299 | Msa0453970:CDS | 35.0% | |
| ! | ACCTCCCTTTGATAATTTAC+TGG | - | chr3_3:44953284-44953303 | None:intergenic | 35.0% |
| GATGAGTTATCCCATACAAT+TGG | + | chr3_3:44953317-44953336 | Msa0453970:CDS | 35.0% | |
| TCTCTGATATTGCTGAGAAT+TGG | - | chr3_3:44953403-44953422 | None:intergenic | 35.0% | |
| AACACTAAATGTAGGGTTGG+AGG | + | chr3_3:44952920-44952939 | Msa0453970:CDS | 40.0% | |
| AAGTAATTGAAGGGGATGGA+GGG | + | chr3_3:44953018-44953037 | Msa0453970:CDS | 40.0% | |
| TAAGTGTGCCTTCTCTCTTT+AGG | + | chr3_3:44953076-44953095 | Msa0453970:intron | 40.0% | |
| ! | TAAAGTGGACTCTGATGACT+TGG | - | chr3_3:44953498-44953517 | None:intergenic | 40.0% |
| ! | TGCTCTTGGTCCTTATTTCT+AGG | - | chr3_3:44953637-44953656 | None:intergenic | 40.0% |
| AACACTAAATGTAGGGTTGG+AGG | + | chr3_3:44952920-44952939 | Msa0453970:CDS | 40.0% | |
| AAGTAATTGAAGGGGATGGA+GGG | + | chr3_3:44953018-44953037 | Msa0453970:CDS | 40.0% | |
| TAAGTGTGCCTTCTCTCTTT+AGG | + | chr3_3:44953076-44953095 | Msa0453970:intron | 40.0% | |
| ! | TAAAGTGGACTCTGATGACT+TGG | - | chr3_3:44953498-44953517 | None:intergenic | 40.0% |
| ! | TGCTCTTGGTCCTTATTTCT+AGG | - | chr3_3:44953637-44953656 | None:intergenic | 40.0% |
| GTGCAAGTAATTGAAGGGGA+TGG | + | chr3_3:44953014-44953033 | Msa0453970:CDS | 45.0% | |
| CAAGTAATTGAAGGGGATGG+AGG | + | chr3_3:44953017-44953036 | Msa0453970:CDS | 45.0% | |
| AGTAATTGAAGGGGATGGAG+GGG | + | chr3_3:44953019-44953038 | Msa0453970:CDS | 45.0% | |
| TGCCTTCTCTCTTTAGGTCA+TGG | + | chr3_3:44953082-44953101 | Msa0453970:intron | 45.0% | |
| CACTTGGAGCCCAATTGTAT+GGG | - | chr3_3:44953330-44953349 | None:intergenic | 45.0% | |
| GAAGGAGGCTATCTCAATCA+AGG | + | chr3_3:44953353-44953372 | Msa0453970:CDS | 45.0% | |
| !! | TTGCTAATGGGTGTTGCTCT+TGG | - | chr3_3:44953651-44953670 | None:intergenic | 45.0% |
| GTGCAAGTAATTGAAGGGGA+TGG | + | chr3_3:44953014-44953033 | Msa0453970:CDS | 45.0% | |
| CAAGTAATTGAAGGGGATGG+AGG | + | chr3_3:44953017-44953036 | Msa0453970:CDS | 45.0% | |
| AGTAATTGAAGGGGATGGAG+GGG | + | chr3_3:44953019-44953038 | Msa0453970:CDS | 45.0% | |
| TGCCTTCTCTCTTTAGGTCA+TGG | + | chr3_3:44953082-44953101 | Msa0453970:intron | 45.0% | |
| CACTTGGAGCCCAATTGTAT+GGG | - | chr3_3:44953330-44953349 | None:intergenic | 45.0% | |
| GAAGGAGGCTATCTCAATCA+AGG | + | chr3_3:44953353-44953372 | Msa0453970:CDS | 45.0% | |
| !! | TTGCTAATGGGTGTTGCTCT+TGG | - | chr3_3:44953651-44953670 | None:intergenic | 45.0% |
| ! | AGAGAGAAGGCACACTTACC+AGG | - | chr3_3:44953074-44953093 | None:intergenic | 50.0% |
| GGCCATGACCTAAAGAGAGA+AGG | - | chr3_3:44953087-44953106 | None:intergenic | 50.0% | |
| CCACTTGGAGCCCAATTGTA+TGG | - | chr3_3:44953331-44953350 | None:intergenic | 50.0% | |
| CCATACAATTGGGCTCCAAG+TGG | + | chr3_3:44953328-44953347 | Msa0453970:CDS | 50.0% | |
| ATTGGGCTCCAAGTGGTTGA+AGG | + | chr3_3:44953335-44953354 | Msa0453970:CDS | 50.0% | |
| GATAGCCTCCTTCAACCACT+TGG | - | chr3_3:44953346-44953365 | None:intergenic | 50.0% | |
| !! | GTGGACTCTGATGACTTGGT+AGG | - | chr3_3:44953494-44953513 | None:intergenic | 50.0% |
| ! | AGAGAGAAGGCACACTTACC+AGG | - | chr3_3:44953074-44953093 | None:intergenic | 50.0% |
| GGCCATGACCTAAAGAGAGA+AGG | - | chr3_3:44953087-44953106 | None:intergenic | 50.0% | |
| CCACTTGGAGCCCAATTGTA+TGG | - | chr3_3:44953331-44953350 | None:intergenic | 50.0% | |
| CCATACAATTGGGCTCCAAG+TGG | + | chr3_3:44953328-44953347 | Msa0453970:CDS | 50.0% | |
| ATTGGGCTCCAAGTGGTTGA+AGG | + | chr3_3:44953335-44953354 | Msa0453970:CDS | 50.0% | |
| GATAGCCTCCTTCAACCACT+TGG | - | chr3_3:44953346-44953365 | None:intergenic | 50.0% | |
| !! | GTGGACTCTGATGACTTGGT+AGG | - | chr3_3:44953494-44953513 | None:intergenic | 50.0% |
| ATGTAGGGTTGGAGGCTCTC+TGG | + | chr3_3:44952928-44952947 | Msa0453970:CDS | 55.0% | |
| TGTAGGGTTGGAGGCTCTCT+GGG | + | chr3_3:44952929-44952948 | Msa0453970:CDS | 55.0% | |
| ATTGAAGGGGATGGAGGGGT+TGG | + | chr3_3:44953023-44953042 | Msa0453970:CDS | 55.0% | |
| ATGTAGGGTTGGAGGCTCTC+TGG | + | chr3_3:44952928-44952947 | Msa0453970:CDS | 55.0% | |
| TGTAGGGTTGGAGGCTCTCT+GGG | + | chr3_3:44952929-44952948 | Msa0453970:CDS | 55.0% | |
| ATTGAAGGGGATGGAGGGGT+TGG | + | chr3_3:44953023-44953042 | Msa0453970:CDS | 55.0% | |
| TCTCTGGGCTGCACAGTCCA+AGG | + | chr3_3:44952944-44952963 | Msa0453970:CDS | 60.0% | |
| GGGCTCCAAGTGGTTGAAGG+AGG | + | chr3_3:44953338-44953357 | Msa0453970:CDS | 60.0% | |
| TCTCTGGGCTGCACAGTCCA+AGG | + | chr3_3:44952944-44952963 | Msa0453970:CDS | 60.0% | |
| GGGCTCCAAGTGGTTGAAGG+AGG | + | chr3_3:44953338-44953357 | Msa0453970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 44952880 | 44953692 | 44952880 | ID=Msa0453970;Name=Msa0453970 |
| chr3_3 | mRNA | 44952880 | 44953692 | 44952880 | ID=Msa0453970-mRNA-1;Parent=Msa0453970;Name=Msa0453970-mRNA-1;_AED=0.22;_eAED=0.22;_QI=14|1|1|1|1|1|2|130|156 |
| chr3_3 | exon | 44952880 | 44953074 | 44952880 | ID=Msa0453970-mRNA-1:exon:8251;Parent=Msa0453970-mRNA-1 |
| chr3_3 | exon | 44953273 | 44953692 | 44953273 | ID=Msa0453970-mRNA-1:exon:8252;Parent=Msa0453970-mRNA-1 |
| chr3_3 | five_prime_UTR | 44952880 | 44952893 | 44952880 | ID=Msa0453970-mRNA-1:five_prime_utr;Parent=Msa0453970-mRNA-1 |
| chr3_3 | CDS | 44952894 | 44953074 | 44952894 | ID=Msa0453970-mRNA-1:cds;Parent=Msa0453970-mRNA-1 |
| chr3_3 | CDS | 44953273 | 44953562 | 44953273 | ID=Msa0453970-mRNA-1:cds;Parent=Msa0453970-mRNA-1 |
| chr3_3 | three_prime_UTR | 44953563 | 44953692 | 44953563 | ID=Msa0453970-mRNA-1:three_prime_utr;Parent=Msa0453970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
