Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611950 | XP_003608087.1 | 96.000 | 350 | 14 | 0 | 17 | 366 | 15 | 364 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611950 | sp|Q43725|CYSKM_ARATH | 76.220 | 328 | 78 | 0 | 38 | 365 | 102 | 429 | 4.67e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036230 | Msa0611950 | 0.803602 | 3.223323e-49 | -8.615850e-47 |
| Msa0043150 | Msa0611950 | 0.805488 | 1.303267e-49 | -8.615850e-47 |
| Msa0046200 | Msa0611950 | 0.812714 | 3.688994e-51 | -8.615850e-47 |
| Msa0077250 | Msa0611950 | 0.803589 | 3.243262e-49 | -8.615850e-47 |
| Msa0605480 | Msa0611950 | 0.805866 | 1.085180e-49 | -8.615850e-47 |
| Msa0611950 | Msa0629720 | 0.811937 | 5.452862e-51 | -8.615850e-47 |
| Msa0611950 | Msa0652210 | 0.895472 | 9.275422e-76 | -8.615850e-47 |
| Msa0611950 | Msa0667600 | 0.802199 | 6.283396e-49 | -8.615850e-47 |
| Msa0611950 | Msa0694790 | 0.911699 | 4.524711e-83 | -8.615850e-47 |
| Msa0611950 | Msa0773960 | 0.806113 | 9.630663e-50 | -8.615850e-47 |
| Msa0611950 | Msa0854380 | 0.806586 | 7.654119e-50 | -8.615850e-47 |
| Msa0611950 | Msa0893840 | 0.802179 | 6.341722e-49 | -8.615850e-47 |
| Msa0611950 | Msa0896920 | 0.823677 | 1.218083e-53 | -8.615850e-47 |
| Msa0611950 | Msa0913550 | 0.823783 | 1.150288e-53 | -8.615850e-47 |
| Msa0611950 | Msa0946010 | 0.811925 | 5.486030e-51 | -8.615850e-47 |
| Msa0611950 | Msa0951150 | 0.811859 | 5.669401e-51 | -8.615850e-47 |
| Msa0611950 | Msa0970270 | 0.806703 | 7.231578e-50 | -8.615850e-47 |
| Msa0611950 | Msa0996980 | 0.824683 | 7.066602e-54 | -8.615850e-47 |
| Msa0611950 | Msa1024480 | 0.813641 | 2.309221e-51 | -8.615850e-47 |
| Msa0611950 | Msa1064940 | 0.809044 | 2.297932e-50 | -8.615850e-47 |
| Msa0611950 | Msa1100560 | 0.813674 | 2.270812e-51 | -8.615850e-47 |
| Msa0611950 | Msa1136050 | 0.805568 | 1.253494e-49 | -8.615850e-47 |
| Msa0611950 | Msa1136060 | 0.806781 | 6.964235e-50 | -8.615850e-47 |
| Msa0611950 | Msa1143250 | 0.804851 | 1.771537e-49 | -8.615850e-47 |
| Msa0611950 | Msa1147010 | 0.806539 | 7.831191e-50 | -8.615850e-47 |
| Msa0611950 | Msa1152310 | 0.800247 | 1.575972e-48 | -8.615850e-47 |
| Msa0611950 | Msa1179190 | 0.844916 | 5.620758e-59 | -8.615850e-47 |
| Msa0611950 | Msa1233620 | 0.818219 | 2.196791e-52 | -8.615850e-47 |
| Msa0611950 | Msa1263110 | 0.801277 | 9.712809e-49 | -8.615850e-47 |
| Msa0611950 | Msa1275840 | 0.809225 | 2.102560e-50 | -8.615850e-47 |
| Msa0611950 | Msa1275870 | 0.829296 | 5.572779e-55 | -8.615850e-47 |
| Msa0611950 | Msa1284020 | 0.800727 | 1.258284e-48 | -8.615850e-47 |
| Msa0611950 | Msa1314020 | 0.805573 | 1.250604e-49 | -8.615850e-47 |
| Msa0611950 | Msa1314050 | 0.823423 | 1.396385e-53 | -8.615850e-47 |
| Msa0611950 | Msa1409600 | 0.858144 | 1.007866e-62 | -8.615850e-47 |
| Msa0611950 | Msa1451660 | 0.800289 | 1.545365e-48 | -8.615850e-47 |
| Msa0611950 | Msa1459610 | 0.808912 | 2.453204e-50 | -8.615850e-47 |
| Msa0209060 | Msa0611950 | 0.810134 | 1.340599e-50 | -8.615850e-47 |
| Msa0238110 | Msa0611950 | 0.814404 | 1.567689e-51 | -8.615850e-47 |
| Msa0403720 | Msa0611950 | -0.811465 | 6.906271e-51 | -8.615850e-47 |
| Msa0409250 | Msa0611950 | 0.810586 | 1.071063e-50 | -8.615850e-47 |
| Msa0448230 | Msa0611950 | 0.805961 | 1.036672e-49 | -8.615850e-47 |
| Msa0453970 | Msa0611950 | 0.800700 | 1.274314e-48 | -8.615850e-47 |
| Msa0472390 | Msa0611950 | 0.820941 | 5.255723e-53 | -8.615850e-47 |
| Msa0247050 | Msa0611950 | 0.809322 | 2.004151e-50 | -8.615850e-47 |
| Msa0288540 | Msa0611950 | 0.803448 | 3.468932e-49 | -8.615850e-47 |
| Msa0326770 | Msa0611950 | 0.803717 | 3.051499e-49 | -8.615850e-47 |
| Msa0360640 | Msa0611950 | 0.812009 | 5.259929e-51 | -8.615850e-47 |
| Msa0531030 | Msa0611950 | 0.823155 | 1.612924e-53 | -8.615850e-47 |
| Msa0531080 | Msa0611950 | 0.813942 | 1.982745e-51 | -8.615850e-47 |
| Msa0549970 | Msa0611950 | 0.808588 | 2.877433e-50 | -8.615850e-47 |
| Msa0556720 | Msa0611950 | 0.948267 | 1.323545e-106 | -8.615850e-47 |
| Msa0591490 | Msa0611950 | 0.818230 | 2.184581e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611950 | MtrunA17_Chr4g0045721 | 96.000 | 350 | 14 | 0 | 17 | 366 | 15 | 364 | 0.0 | 681 |
| Msa0611950 | MtrunA17_Chr4g0045771 | 87.158 | 366 | 36 | 3 | 1 | 366 | 1 | 355 | 0.0 | 637 |
| Msa0611950 | MtrunA17_Chr4g0045781 | 75.065 | 385 | 75 | 5 | 1 | 366 | 1 | 383 | 0.0 | 545 |
| Msa0611950 | MtrunA17_Chr5g0394491 | 70.440 | 318 | 94 | 0 | 49 | 366 | 8 | 325 | 3.86e-153 | 434 |
| Msa0611950 | MtrunA17_Chr1g0205381 | 70.440 | 318 | 94 | 0 | 49 | 366 | 8 | 325 | 2.24e-152 | 432 |
| Msa0611950 | MtrunA17_Chr1g0191041 | 71.384 | 318 | 91 | 0 | 45 | 362 | 4 | 321 | 3.01e-152 | 431 |
| Msa0611950 | MtrunA17_Chr1g0191051 | 63.376 | 314 | 115 | 0 | 49 | 362 | 7 | 320 | 1.82e-142 | 407 |
| Msa0611950 | MtrunA17_Chr7g0254401 | 58.806 | 335 | 128 | 1 | 28 | 362 | 44 | 368 | 1.99e-135 | 390 |
| Msa0611950 | MtrunA17_Chr7g0248021 | 59.621 | 317 | 128 | 0 | 48 | 364 | 60 | 376 | 2.20e-134 | 388 |
| Msa0611950 | MtrunA17_Chr1g0191061 | 55.056 | 356 | 114 | 2 | 53 | 362 | 25 | 380 | 3.36e-124 | 362 |
| Msa0611950 | MtrunA17_Chr1g0191071 | 56.554 | 267 | 109 | 2 | 97 | 362 | 1 | 261 | 6.39e-93 | 278 |
| Msa0611950 | MtrunA17_Chr5g0446431 | 27.887 | 355 | 197 | 6 | 51 | 348 | 46 | 398 | 1.51e-38 | 142 |
| Msa0611950 | MtrunA17_Chr2g0310201 | 35.766 | 137 | 52 | 5 | 113 | 222 | 6 | 133 | 5.96e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611950 | AT3G59760.3 | 76.220 | 328 | 78 | 0 | 38 | 365 | 102 | 429 | 4.75e-180 | 506 |
| Msa0611950 | AT3G59760.1 | 76.220 | 328 | 78 | 0 | 38 | 365 | 102 | 429 | 4.78e-180 | 506 |
| Msa0611950 | AT2G43750.1 | 74.848 | 330 | 83 | 0 | 36 | 365 | 62 | 391 | 1.10e-176 | 496 |
| Msa0611950 | AT2G43750.2 | 74.848 | 330 | 83 | 0 | 36 | 365 | 62 | 391 | 1.10e-176 | 496 |
| Msa0611950 | AT3G59760.2 | 75.667 | 300 | 73 | 0 | 38 | 337 | 102 | 401 | 7.26e-161 | 458 |
| Msa0611950 | AT4G14880.5 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 1.47e-147 | 420 |
| Msa0611950 | AT4G14880.3 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 1.47e-147 | 420 |
| Msa0611950 | AT4G14880.4 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 1.47e-147 | 420 |
| Msa0611950 | AT4G14880.2 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 1.47e-147 | 420 |
| Msa0611950 | AT4G14880.1 | 66.246 | 317 | 107 | 0 | 49 | 365 | 5 | 321 | 1.47e-147 | 420 |
| Msa0611950 | AT3G04940.1 | 64.151 | 318 | 114 | 0 | 45 | 362 | 4 | 321 | 7.65e-139 | 398 |
| Msa0611950 | AT3G04940.2 | 64.151 | 318 | 114 | 0 | 45 | 362 | 4 | 321 | 7.65e-139 | 398 |
| Msa0611950 | AT5G28020.2 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 7.32e-138 | 395 |
| Msa0611950 | AT5G28020.4 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 7.32e-138 | 395 |
| Msa0611950 | AT5G28020.1 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 7.32e-138 | 395 |
| Msa0611950 | AT5G28020.3 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 7.32e-138 | 395 |
| Msa0611950 | AT5G28020.6 | 64.151 | 318 | 114 | 0 | 45 | 362 | 3 | 320 | 7.32e-138 | 395 |
| Msa0611950 | AT5G28030.1 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 7.77e-135 | 388 |
| Msa0611950 | AT5G28030.4 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 7.77e-135 | 388 |
| Msa0611950 | AT5G28030.5 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 7.77e-135 | 388 |
| Msa0611950 | AT5G28030.2 | 62.617 | 321 | 120 | 0 | 45 | 365 | 3 | 323 | 7.77e-135 | 388 |
| Msa0611950 | AT3G61440.1 | 54.416 | 351 | 148 | 4 | 24 | 364 | 16 | 364 | 1.09e-128 | 374 |
| Msa0611950 | AT3G03630.1 | 58.438 | 320 | 123 | 1 | 44 | 363 | 94 | 403 | 3.44e-122 | 358 |
| Msa0611950 | AT3G22460.1 | 64.074 | 270 | 77 | 1 | 97 | 366 | 1 | 250 | 2.92e-119 | 345 |
| Msa0611950 | AT3G61440.2 | 58.582 | 268 | 111 | 0 | 97 | 364 | 1 | 268 | 3.03e-110 | 323 |
| Msa0611950 | AT5G28030.3 | 62.753 | 247 | 92 | 0 | 45 | 291 | 3 | 249 | 2.21e-104 | 308 |
| Msa0611950 | AT3G61440.4 | 53.177 | 299 | 128 | 4 | 24 | 312 | 16 | 312 | 2.87e-103 | 308 |
| Msa0611950 | AT3G61440.3 | 57.851 | 242 | 102 | 0 | 123 | 364 | 2 | 243 | 3.39e-97 | 289 |
| Msa0611950 | AT3G22460.2 | 70.166 | 181 | 54 | 0 | 49 | 229 | 8 | 188 | 7.50e-93 | 276 |
| Msa0611950 | AT5G28020.5 | 60.256 | 234 | 93 | 0 | 129 | 362 | 1 | 234 | 1.12e-90 | 272 |
| Msa0611950 | AT1G55880.1 | 27.717 | 368 | 206 | 6 | 39 | 348 | 30 | 395 | 2.23e-40 | 147 |
| Msa0611950 | AT1G55880.2 | 27.187 | 320 | 174 | 5 | 39 | 300 | 30 | 348 | 1.06e-34 | 130 |
Find 116 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4_2:-60332434 | Msa0611950:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4_2:-60331690 | Msa0611950:CDS |
| TGCTGCTAAGCTTGAGCTTA+TGG | 0.244545 | 4_2:-60333681 | Msa0611950:CDS |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_2:-60332275 | Msa0611950:CDS |
| CATTAACCAGCAAGCCTTCC+TGG | 0.284257 | 4_2:+60331919 | None:intergenic |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4_2:+60332107 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4_2:-60332143 | Msa0611950:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4_2:-60332786 | Msa0611950:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4_2:-60332151 | Msa0611950:intron |
| CCTTGGGTGGGTTGTCTCCT+AGG | 0.310476 | 4_2:-60331019 | Msa0611950:three_prime_UTR |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4_2:-60332659 | Msa0611950:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4_2:+60333883 | None:intergenic |
| CTATGAGTGTTAGCTTTCCT+TGG | 0.338136 | 4_2:-60331182 | Msa0611950:three_prime_UTR |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4_2:+60332727 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4_2:+60332683 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4_2:+60332488 | None:intergenic |
| TGTATAGTGTTAGCTTTCCT+TGG | 0.373847 | 4_2:-60331133 | Msa0611950:three_prime_UTR |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4_2:+60333882 | None:intergenic |
| TCTTTGTCCAAGCAAAATAA+TGG | 0.384507 | 4_2:+60331218 | None:intergenic |
| AGAATACAGGGCCAGAGATA+TGG | 0.388256 | 4_2:-60332499 | Msa0611950:CDS |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4_2:-60332755 | Msa0611950:CDS |
| GTATTCTCATAATGCACCTT+AGG | 0.391614 | 4_2:+60332515 | None:intergenic |
| TTCCTTGGATTTCCATCAGT+TGG | 0.402674 | 4_2:-60331118 | Msa0611950:three_prime_UTR |
| TTCCTTGGATTTCCATCAGT+TGG | 0.402674 | 4_2:-60331167 | Msa0611950:three_prime_UTR |
| GAACGTGTAAAATTGTTTCA+TGG | 0.403579 | 4_2:+60331291 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4_2:+60332619 | None:intergenic |
| TATAAAAGATATTTCAATCA+TGG | 0.409870 | 4_2:-60334213 | Msa0611950:five_prime_UTR |
| AGCCCTTAGTGATACTCTTC+AGG | 0.414041 | 4_2:+60333717 | None:intergenic |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4_2:-60331925 | Msa0611950:intron |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4_2:+60333877 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4_2:+60332108 | None:intergenic |
| TAATGCACCTTAGGATTTGA+AGG | 0.427650 | 4_2:+60332524 | None:intergenic |
| GTAGTGTGGTTGTATTGTAA+TGG | 0.433833 | 4_2:-60330940 | Msa0611950:three_prime_UTR |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4_2:+60331370 | None:intergenic |
| GGCACTCTTGCTTTGTATTG+TGG | 0.442813 | 4_2:-60331097 | Msa0611950:three_prime_UTR |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4_2:-60332449 | Msa0611950:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4_2:+60333853 | None:intergenic |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4_2:+60332557 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4_2:+60332610 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4_2:-60331381 | Msa0611950:CDS |
| GTTTGGGATTCGACAAAGAC+AGG | 0.454308 | 4_2:+60333899 | None:intergenic |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4_2:-60332728 | Msa0611950:CDS |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4_2:+60331369 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4_2:-60332144 | Msa0611950:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4_2:+60331297 | None:intergenic |
| GCTAACACTCATAGAAGAAT+CGG | 0.468920 | 4_2:+60331191 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4_2:-60331716 | Msa0611950:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4_2:-60333758 | Msa0611950:intron |
| AACATTATTAAAAGAAGATA+AGG | 0.478902 | 4_2:+60334054 | None:intergenic |
| GCACGAAATACACGAGATCA+TGG | 0.481442 | 4_2:+60334082 | None:intergenic |
| ACGGCGACGACAATAACAAA+AGG | 0.482422 | 4_2:+60331068 | None:intergenic |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4_2:-60332531 | Msa0611950:CDS |
| CGTGCTCGTGCTCGCCCTAT+CGG | 0.490433 | 4_2:-60333959 | Msa0611950:CDS |
| CGGCGACGACAATAACAAAA+GGG | 0.492664 | 4_2:+60331069 | None:intergenic |
| AAAATACAACAGAAACAAAA+CGG | 0.496982 | 4_2:+60331049 | None:intergenic |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4_2:-60331937 | Msa0611950:CDS |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4_2:-60331316 | Msa0611950:CDS |
| GAAGAAGCCATTGTTGCTTG+TGG | 0.514767 | 4_2:+60334013 | None:intergenic |
| AGCTGAAACAGTGGCCGATA+GGG | 0.515400 | 4_2:+60333945 | None:intergenic |
| AAGGTGCATTATGAGAATAC+AGG | 0.521250 | 4_2:-60332512 | Msa0611950:CDS |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4_2:-60332917 | Msa0611950:CDS |
| GTTTCTGTTTGTTTGTAGTG+TGG | 0.522067 | 4_2:-60330954 | Msa0611950:three_prime_UTR |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4_2:-60332138 | Msa0611950:CDS |
| GCCACTGTTTCAGCTTCACC+AGG | 0.526894 | 4_2:-60333937 | Msa0611950:CDS |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4_2:-60331666 | Msa0611950:CDS |
| ATAATTCAAAGACTTGACTA+AGG | 0.529624 | 4_2:+60333988 | None:intergenic |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4_2:-60332446 | Msa0611950:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4_2:-60332485 | Msa0611950:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4_2:-60332428 | Msa0611950:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4_2:-60333655 | Msa0611950:intron |
| TATAAATAGAAAAGAGTACA+AGG | 0.540543 | 4_2:+60330906 | None:intergenic |
| GAAGAGTATCACTAAGGGCT+CGG | 0.541620 | 4_2:-60333714 | Msa0611950:CDS |
| AGGGGAAGATGAAAAGATCC+TGG | 0.543787 | 4_2:+60333919 | None:intergenic |
| AAGCTGAAACAGTGGCCGAT+AGG | 0.545596 | 4_2:+60333944 | None:intergenic |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4_2:+60332922 | None:intergenic |
| AAAGATATTTCAATCATGGA+GGG | 0.551487 | 4_2:-60334209 | Msa0611950:five_prime_UTR |
| AAAGCAAGAGTGCCAACTGA+TGG | 0.557553 | 4_2:+60331106 | None:intergenic |
| AAAGCAAGAGTGCCAACTGA+TGG | 0.557553 | 4_2:+60331155 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4_2:+60332430 | None:intergenic |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4_2:-60332150 | Msa0611950:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4_2:+60332754 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4_2:-60333720 | Msa0611950:CDS |
| GAATTCTCCACAAGCAACAA+TGG | 0.571120 | 4_2:-60334020 | Msa0611950:exon |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4_2:-60332932 | Msa0611950:CDS |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4_2:-60332761 | Msa0611950:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4_2:-60332308 | Msa0611950:intron |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4_2:+60333728 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4_2:-60332912 | Msa0611950:intron |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_2:+60332278 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4_2:-60332142 | Msa0611950:CDS |
| AAAAGATATTTCAATCATGG+AGG | 0.610591 | 4_2:-60334210 | Msa0611950:five_prime_UTR |
| TCCTGGTGAAGCTGAAACAG+TGG | 0.613084 | 4_2:+60333936 | None:intergenic |
| AGGTGCATTATGAGAATACA+GGG | 0.613254 | 4_2:-60332511 | Msa0611950:CDS |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4_2:+60333656 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4_2:-60331665 | Msa0611950:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4_2:-60333719 | Msa0611950:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4_2:-60332617 | Msa0611950:CDS |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4_2:+60332085 | None:intergenic |
| TTTGGGATTCGACAAAGACA+GGG | 0.636572 | 4_2:+60333900 | None:intergenic |
| TGCCAACTGATGGAAATCCA+AGG | 0.640604 | 4_2:+60331116 | None:intergenic |
| TGCCAACTGATGGAAATCCA+AGG | 0.640604 | 4_2:+60331165 | None:intergenic |
| CCTAGGAGACAACCCACCCA+AGG | 0.644420 | 4_2:+60331019 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4_2:-60331953 | Msa0611950:CDS |
| GGCGACGACAATAACAAAAG+GGG | 0.650204 | 4_2:+60331070 | None:intergenic |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4_2:+60332758 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_2:-60332272 | Msa0611950:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4_2:-60331651 | Msa0611950:intron |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4_2:+60331700 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4_2:-60332088 | Msa0611950:intron |
| TTGAAAATGAGTCTAAAACA+TGG | 0.666615 | 4_2:+60331269 | None:intergenic |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4_2:-60331933 | Msa0611950:CDS |
| AACACTCATAGAAGAATCGG+AGG | 0.674248 | 4_2:+60331194 | None:intergenic |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4_2:+60332144 | None:intergenic |
| TTGGGATTCGACAAAGACAG+GGG | 0.685650 | 4_2:+60333901 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4_2:-60332916 | Msa0611950:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4_2:-60333858 | Msa0611950:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTAGTATAAAAATA+TGG | + | chr4_2:60331739-60331758 | None:intergenic | 10.0% |
| !! | ATTAATTATGCTTTAATATA+TGG | + | chr4_2:60333262-60333281 | None:intergenic | 10.0% |
| !!! | AAAAGTAATATTTTTTAATG+AGG | + | chr4_2:60333462-60333481 | None:intergenic | 10.0% |
| !!! | TAAAAAATATTACTTTTGTA+AGG | - | chr4_2:60333465-60333484 | Msa0611950:intron | 10.0% |
| !!! | CTTTTATTATATTTCAATCA+TGG | - | chr4_2:60330941-60330960 | Msa0611950:three_prime_UTR | 15.0% |
| !! | AACATTATTAAAAGAAGATA+AGG | + | chr4_2:60331025-60331044 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | - | chr4_2:60331474-60331493 | Msa0611950:intron | 15.0% |
| !! | TAGAACATAAACTTTAAATT+TGG | - | chr4_2:60331650-60331669 | Msa0611950:intron | 15.0% |
| !!! | ATTATAGCATCATTATTTTT+AGG | - | chr4_2:60331924-60331943 | Msa0611950:intron | 15.0% |
| !! | AACTTATTATATTTCTTACT+TGG | + | chr4_2:60332834-60332853 | None:intergenic | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | - | chr4_2:60333264-60333283 | Msa0611950:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | - | chr4_2:60333265-60333284 | Msa0611950:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | + | chr4_2:60333675-60333694 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | - | chr4_2:60333676-60333695 | Msa0611950:CDS | 15.0% |
| !! | ATTTCAGCTAAATAATTGTA+AGG | - | chr4_2:60331768-60331787 | Msa0611950:intron | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | + | chr4_2:60331875-60331894 | None:intergenic | 20.0% |
| !!! | TCATTATTTTTAGGTGTAAA+TGG | - | chr4_2:60331933-60331952 | Msa0611950:CDS | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | - | chr4_2:60332095-60332114 | Msa0611950:CDS | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | + | chr4_2:60332680-60332699 | None:intergenic | 20.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | - | chr4_2:60332683-60332702 | Msa0611950:CDS | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | + | chr4_2:60332696-60332715 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | + | chr4_2:60332752-60332771 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | + | chr4_2:60332971-60332990 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTGATTAACTGT+TGG | - | chr4_2:60333298-60333317 | Msa0611950:intron | 20.0% |
| !! | AAAATACAACAGAAACAAAA+CGG | + | chr4_2:60334030-60334049 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCTTTTTTCCTT+GGG | - | chr4_2:60334041-60334060 | Msa0611950:five_prime_UTR | 20.0% |
| !!! | TATAAATAGAAAAGAGTACA+AGG | + | chr4_2:60334173-60334192 | None:intergenic | 20.0% |
| !!! | AAATGTGTCTTTTTTCTTAA+TGG | + | chr4_2:60334210-60334229 | None:intergenic | 20.0% |
| ! | AAAAGATATTTCAATCATGG+AGG | - | chr4_2:60330866-60330885 | Msa0611950:three_prime_UTR | 25.0% |
| ! | AAAGATATTTCAATCATGGA+GGG | - | chr4_2:60330867-60330886 | Msa0611950:three_prime_UTR | 25.0% |
| ! | ATAATTCAAAGACTTGACTA+AGG | + | chr4_2:60331091-60331110 | None:intergenic | 25.0% |
| ! | TTTGTTTCCTTTCTATTTGT+TGG | - | chr4_2:60331520-60331539 | Msa0611950:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | - | chr4_2:60331783-60331802 | Msa0611950:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | + | chr4_2:60332043-60332062 | None:intergenic | 25.0% |
| ! | TCATGATTGTTAATTGTTTC+TGG | - | chr4_2:60332268-60332287 | Msa0611950:CDS | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | + | chr4_2:60332886-60332905 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | + | chr4_2:60332972-60332991 | None:intergenic | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | + | chr4_2:60333050-60333069 | None:intergenic | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | + | chr4_2:60333343-60333362 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | + | chr4_2:60333506-60333525 | None:intergenic | 25.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | + | chr4_2:60333557-60333576 | None:intergenic | 25.0% |
| ! | GAGAGTAAAAGATAATTAAG+TGG | + | chr4_2:60333594-60333613 | None:intergenic | 25.0% |
| !! | TTGAAAATGAGTCTAAAACA+TGG | + | chr4_2:60333810-60333829 | None:intergenic | 25.0% |
| !! | GTTGTATTTTCTTTTTTCCT+TGG | - | chr4_2:60334040-60334059 | Msa0611950:five_prime_UTR | 25.0% |
| TATTGCCAATGATATTACAG+AGG | - | chr4_2:60331218-60331237 | Msa0611950:three_prime_UTR | 30.0% | |
| ACACTAACCAACAAATAGAA+AGG | + | chr4_2:60331530-60331549 | None:intergenic | 30.0% | |
| ! | TAGTCAATGGGTGATATTTT+TGG | - | chr4_2:60331550-60331569 | Msa0611950:intron | 30.0% |
| TAAGGAATAAATGTTGTTGG+TGG | - | chr4_2:60331786-60331805 | Msa0611950:intron | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | + | chr4_2:60332396-60332415 | None:intergenic | 30.0% | |
| !! | AGAGTTCTTATGAAAGCATT+TGG | - | chr4_2:60332417-60332436 | Msa0611950:CDS | 30.0% |
| TGATAATCCTTCAAATCCTA+AGG | - | chr4_2:60332545-60332564 | Msa0611950:CDS | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | + | chr4_2:60332591-60332610 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | - | chr4_2:60332591-60332610 | Msa0611950:CDS | 30.0% | |
| !! | CAAAGTAGACATTTTAGTCT+CGG | - | chr4_2:60332614-60332633 | Msa0611950:CDS | 30.0% |
| TAAATGGAAATCAACAAGCT+AGG | + | chr4_2:60332736-60332755 | None:intergenic | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | + | chr4_2:60332866-60332885 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCCTGCTAAATCAC+AGG | - | chr4_2:60332908-60332927 | Msa0611950:intron | 30.0% |
| AATCCTTGATGAAGTTATAG+CGG | - | chr4_2:60332988-60333007 | Msa0611950:intron | 30.0% | |
| CAATGGTAAGAATTTAGGTA+AGG | + | chr4_2:60333338-60333357 | None:intergenic | 30.0% | |
| CTTACCTAAATTCTTACCAT+TGG | - | chr4_2:60333336-60333355 | Msa0611950:intron | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | - | chr4_2:60333344-60333363 | Msa0611950:intron | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | - | chr4_2:60333490-60333509 | Msa0611950:intron | 30.0% | |
| ! | TTTTTATATACCATCCAAGG+TGG | + | chr4_2:60333503-60333522 | None:intergenic | 30.0% |
| GAACGTGTAAAATTGTTTCA+TGG | + | chr4_2:60333788-60333807 | None:intergenic | 30.0% | |
| ! | TCAACTGTATTTTGTACAAG+TGG | - | chr4_2:60333826-60333845 | Msa0611950:intron | 30.0% |
| TCTTTGTCCAAGCAAAATAA+TGG | + | chr4_2:60333861-60333880 | None:intergenic | 30.0% | |
| ! | TATTTTCTTTTTTCCTTGGG+TGG | - | chr4_2:60334044-60334063 | Msa0611950:five_prime_UTR | 30.0% |
| ! | ATTTTCTTTTTTCCTTGGGT+GGG | - | chr4_2:60334045-60334064 | Msa0611950:five_prime_UTR | 30.0% |
| AATATTGAGATCATCGTTGC+TGG | + | chr4_2:60331202-60331221 | None:intergenic | 35.0% | |
| GCATGTAAGCAGCAAAAAAA+AGG | + | chr4_2:60331309-60331328 | None:intergenic | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | + | chr4_2:60331351-60331370 | None:intergenic | 35.0% | |
| !! | TTACCTGAAGAGTATCACTA+AGG | - | chr4_2:60331356-60331375 | Msa0611950:CDS | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | - | chr4_2:60331357-60331376 | Msa0611950:CDS | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | - | chr4_2:60331537-60331556 | Msa0611950:intron | 35.0% |
| GTTGGTTAGTGTTAGTCAAT+GGG | - | chr4_2:60331538-60331557 | Msa0611950:intron | 35.0% | |
| GATATAGCGTTATAGCATAG+CGG | - | chr4_2:60331828-60331847 | Msa0611950:intron | 35.0% | |
| TACGCTACAATACTAAGCAA+TGG | + | chr4_2:60331902-60331921 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | - | chr4_2:60332000-60332019 | Msa0611950:intron | 35.0% | |
| !! | GTATGCACTTCAGAGTATTT+TGG | - | chr4_2:60332290-60332309 | Msa0611950:CDS | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | - | chr4_2:60332303-60332322 | Msa0611950:intron | 35.0% |
| ACCTTTAGTAGCTGCTATAA+AGG | + | chr4_2:60332352-60332371 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACCGAATATTCCA+AGG | - | chr4_2:60332449-60332468 | Msa0611950:CDS | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | + | chr4_2:60332460-60332479 | None:intergenic | 35.0% |
| TGTTGAAGCATGTATGCATT+AGG | + | chr4_2:60332522-60332541 | None:intergenic | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | + | chr4_2:60332555-60332574 | None:intergenic | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | + | chr4_2:60332564-60332583 | None:intergenic | 35.0% | |
| AAGGTGCATTATGAGAATAC+AGG | - | chr4_2:60332564-60332583 | Msa0611950:CDS | 35.0% | |
| AGGTGCATTATGAGAATACA+GGG | - | chr4_2:60332565-60332584 | Msa0611950:CDS | 35.0% | |
| ! | CACACATAATTCAGGGTATT+GGG | - | chr4_2:60332933-60332952 | Msa0611950:CDS | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | - | chr4_2:60332934-60332953 | Msa0611950:CDS | 35.0% |
| AAGAATCTGTCAAAACTGCA+AGG | - | chr4_2:60333123-60333142 | Msa0611950:intron | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_2:60333423-60333442 | None:intergenic | 35.0% |
| AAATGAGGGAAAGCTTATTG+TGG | - | chr4_2:60333425-60333444 | Msa0611950:intron | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | - | chr4_2:60333486-60333505 | Msa0611950:intron | 35.0% | |
| ! | ATATGATCAGATTGGCTGAA+GGG | + | chr4_2:60333549-60333568 | None:intergenic | 35.0% |
| ! | AATATGATCAGATTGGCTGA+AGG | + | chr4_2:60333550-60333569 | None:intergenic | 35.0% |
| ! | TGTGTCTACTTCTCTTTTTC+AGG | - | chr4_2:60333727-60333746 | Msa0611950:CDS | 35.0% |
| AGAATGTGAGAAAATGCAAC+CGG | - | chr4_2:60333760-60333779 | Msa0611950:intron | 35.0% | |
| GTAAAATTGTTTCATGGCTC+CGG | + | chr4_2:60333782-60333801 | None:intergenic | 35.0% | |
| ! | TATTTTGTACAAGTGGTCGA+TGG | - | chr4_2:60333833-60333852 | Msa0611950:intron | 35.0% |
| !! | GATGGAACCATTATTTTGCT+TGG | - | chr4_2:60333851-60333870 | Msa0611950:intron | 35.0% |
| GCTAACACTCATAGAAGAAT+CGG | + | chr4_2:60333888-60333907 | None:intergenic | 35.0% | |
| !! | TGTATAGTGTTAGCTTTCCT+TGG | - | chr4_2:60333943-60333962 | Msa0611950:CDS | 35.0% |
| TAGCAGCAAAAACAATTCCT+AGG | + | chr4_2:60334077-60334096 | None:intergenic | 35.0% | |
| GTTTCTGTTTGTTTGTAGTG+TGG | - | chr4_2:60334122-60334141 | Msa0611950:five_prime_UTR | 35.0% | |
| GTAGTGTGGTTGTATTGTAA+TGG | - | chr4_2:60334136-60334155 | Msa0611950:five_prime_UTR | 35.0% | |
| GAATTCTCCACAAGCAACAA+TGG | - | chr4_2:60331056-60331075 | Msa0611950:three_prime_UTR | 40.0% | |
| ! | TTTGGGATTCGACAAAGACA+GGG | + | chr4_2:60331179-60331198 | None:intergenic | 40.0% |
| GCCAATGATATTACAGAGGT+CGG | - | chr4_2:60331222-60331241 | Msa0611950:three_prime_UTR | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | + | chr4_2:60331226-60331245 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | - | chr4_2:60331673-60331692 | Msa0611950:CDS | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | + | chr4_2:60331677-60331696 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | - | chr4_2:60332004-60332023 | Msa0611950:intron | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | + | chr4_2:60332123-60332142 | None:intergenic | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | + | chr4_2:60332157-60332176 | None:intergenic | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | - | chr4_2:60332160-60332179 | Msa0611950:intron | 40.0% | |
| ! | CTTTCGTATTTTACCTTCCC+AGG | + | chr4_2:60332180-60332199 | None:intergenic | 40.0% |
| GCCTTTATAGCAGCTACTAA+AGG | - | chr4_2:60332348-60332367 | Msa0611950:intron | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | - | chr4_2:60332459-60332478 | Msa0611950:CDS | 40.0% | |
| !! | GACATTTTAGTCTCGGCAAT+TGG | - | chr4_2:60332621-60332640 | Msa0611950:CDS | 40.0% |
| CTACGTATCAATCAGTGCAT+CGG | - | chr4_2:60332768-60332787 | Msa0611950:CDS | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_2:60332801-60332820 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_2:60332801-60332820 | Msa0611950:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_2:60332804-60332823 | Msa0611950:intron | 40.0% | |
| ACAGGACCACACATAATTCA+GGG | - | chr4_2:60332926-60332945 | Msa0611950:CDS | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | + | chr4_2:60332935-60332954 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | - | chr4_2:60332932-60332951 | Msa0611950:CDS | 40.0% | |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | - | chr4_2:60332958-60332977 | Msa0611950:intron | 40.0% |
| AGACCGCTATAACTTCATCA+AGG | + | chr4_2:60332994-60333013 | None:intergenic | 40.0% | |
| ! | CTTTTCTGATTGTCTGCATG+TGG | - | chr4_2:60333078-60333097 | Msa0611950:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | - | chr4_2:60333098-60333117 | Msa0611950:intron | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | + | chr4_2:60333120-60333139 | None:intergenic | 40.0% |
| TCTTACCATTGGAAAACAGG+TGG | - | chr4_2:60333347-60333366 | Msa0611950:intron | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | - | chr4_2:60333348-60333367 | Msa0611950:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_2:60333355-60333374 | None:intergenic | 40.0% |
| TGCTAAGAGACCTGAAAATG+AGG | - | chr4_2:60333410-60333429 | Msa0611950:intron | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | - | chr4_2:60333411-60333430 | Msa0611950:intron | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | + | chr4_2:60333709-60333728 | None:intergenic | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | + | chr4_2:60333710-60333729 | None:intergenic | 40.0% | |
| AACACTCATAGAAGAATCGG+AGG | + | chr4_2:60333885-60333904 | None:intergenic | 40.0% | |
| !! | CTATGAGTGTTAGCTTTCCT+TGG | - | chr4_2:60333894-60333913 | Msa0611950:CDS | 40.0% |
| TTCCTTGGATTTCCATCAGT+TGG | - | chr4_2:60333909-60333928 | Msa0611950:CDS | 40.0% | |
| TTCCTTGGATTTCCATCAGT+TGG | - | chr4_2:60333909-60333928 | Msa0611950:CDS | 40.0% | |
| !!! | TTGTTTTTGCTGCTACTTCG+CGG | - | chr4_2:60334082-60334101 | Msa0611950:five_prime_UTR | 40.0% |
| GCACGAAATACACGAGATCA+TGG | + | chr4_2:60330997-60331016 | None:intergenic | 45.0% | |
| ! | GAAGAAGCCATTGTTGCTTG+TGG | + | chr4_2:60331066-60331085 | None:intergenic | 45.0% |
| AGGGGAAGATGAAAAGATCC+TGG | + | chr4_2:60331160-60331179 | None:intergenic | 45.0% | |
| TTGGGATTCGACAAAGACAG+GGG | + | chr4_2:60331178-60331197 | None:intergenic | 45.0% | |
| ! | GTTTGGGATTCGACAAAGAC+AGG | + | chr4_2:60331180-60331199 | None:intergenic | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | + | chr4_2:60331196-60331215 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | + | chr4_2:60331197-60331216 | None:intergenic | 45.0% |
| TGCTTACATGCACAGCTCAT+AGG | - | chr4_2:60331318-60331337 | Msa0611950:CDS | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | - | chr4_2:60331332-60331351 | Msa0611950:CDS | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | + | chr4_2:60331362-60331381 | None:intergenic | 45.0% | |
| !! | GAAGAGTATCACTAAGGGCT+CGG | - | chr4_2:60331362-60331381 | Msa0611950:CDS | 45.0% |
| TGCTGCTAAGCTTGAGCTTA+TGG | - | chr4_2:60331395-60331414 | Msa0611950:intron | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | + | chr4_2:60331423-60331442 | None:intergenic | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | - | chr4_2:60331421-60331440 | Msa0611950:intron | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | - | chr4_2:60331425-60331444 | Msa0611950:intron | 45.0% | |
| !!! | GGTGATATTTTTGGATCCCG+AGG | - | chr4_2:60331559-60331578 | Msa0611950:intron | 45.0% |
| TATGCATGACTGCATGTCCT+CGG | + | chr4_2:60331579-60331598 | None:intergenic | 45.0% | |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | - | chr4_2:60332106-60332125 | Msa0611950:CDS | 45.0% |
| ATTCTTGATGCCGAGCAGAA+AGG | - | chr4_2:60332144-60332163 | Msa0611950:CDS | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | - | chr4_2:60332159-60332178 | Msa0611950:intron | 45.0% | |
| !! | ATTTTGGTAGAACCTACCGG+TGG | - | chr4_2:60332306-60332325 | Msa0611950:intron | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | - | chr4_2:60332307-60332326 | Msa0611950:intron | 45.0% |
| AGAATACAGGGCCAGAGATA+TGG | - | chr4_2:60332577-60332596 | Msa0611950:CDS | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | - | chr4_2:60332627-60332646 | Msa0611950:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | - | chr4_2:60332925-60332944 | Msa0611950:CDS | 45.0% | |
| !! | ATAATTCAGGGTATTGGGGC+TGG | - | chr4_2:60332938-60332957 | Msa0611950:CDS | 45.0% |
| AAACAGGTGGGAATTTCCTC+AGG | - | chr4_2:60333360-60333379 | Msa0611950:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | - | chr4_2:60333695-60333714 | Msa0611950:CDS | 45.0% | |
| TGCCAACTGATGGAAATCCA+AGG | + | chr4_2:60333914-60333933 | None:intergenic | 45.0% | |
| !! | AAAGCAAGAGTGCCAACTGA+TGG | + | chr4_2:60333924-60333943 | None:intergenic | 45.0% |
| TGCCAACTGATGGAAATCCA+AGG | + | chr4_2:60333914-60333933 | None:intergenic | 45.0% | |
| !! | AAAGCAAGAGTGCCAACTGA+TGG | + | chr4_2:60333924-60333943 | None:intergenic | 45.0% |
| GGCACTCTTGCTTTGTATTG+TGG | - | chr4_2:60333979-60333998 | Msa0611950:CDS | 45.0% | |
| GGCGACGACAATAACAAAAG+GGG | + | chr4_2:60334009-60334028 | None:intergenic | 45.0% | |
| CGGCGACGACAATAACAAAA+GGG | + | chr4_2:60334010-60334029 | None:intergenic | 45.0% | |
| ACGGCGACGACAATAACAAA+AGG | + | chr4_2:60334011-60334030 | None:intergenic | 45.0% | |
| !! | TATTATTAGTATAAAAATAT+GGG | + | chr4_2:60331738-60331757 | None:intergenic | 5.0% |
| AGCTGAAACAGTGGCCGATA+GGG | + | chr4_2:60331134-60331153 | None:intergenic | 50.0% | |
| AAGCTGAAACAGTGGCCGAT+AGG | + | chr4_2:60331135-60331154 | None:intergenic | 50.0% | |
| TCCTGGTGAAGCTGAAACAG+TGG | + | chr4_2:60331143-60331162 | None:intergenic | 50.0% | |
| ATGCATGACTGCATGTCCTC+GGG | + | chr4_2:60331578-60331597 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | - | chr4_2:60332111-60332130 | Msa0611950:CDS | 50.0% |
| AGGACTCATAACACCTGGGA+AGG | - | chr4_2:60332164-60332183 | Msa0611950:intron | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | + | chr4_2:60332325-60332344 | None:intergenic | 50.0% | |
| AACTGCTCCACTCATAGCCT+TGG | + | chr4_2:60332469-60332488 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | + | chr4_2:60332649-60332668 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | + | chr4_2:60332918-60332937 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | - | chr4_2:60333139-60333158 | Msa0611950:intron | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | - | chr4_2:60333143-60333162 | Msa0611950:intron | 50.0% | |
| CATTAACCAGCAAGCCTTCC+TGG | + | chr4_2:60333160-60333179 | None:intergenic | 50.0% | |
| GCCACTGTTTCAGCTTCACC+AGG | - | chr4_2:60331139-60331158 | Msa0611950:three_prime_UTR | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | + | chr4_2:60331691-60331710 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | - | chr4_2:60331691-60331710 | Msa0611950:CDS | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | - | chr4_2:60331695-60331714 | Msa0611950:CDS | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | + | chr4_2:60331709-60331728 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | + | chr4_2:60332321-60332340 | None:intergenic | 55.0% | |
| ACCGGTGGGAACACAGGAAT+TGG | - | chr4_2:60332321-60332340 | Msa0611950:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | - | chr4_2:60332642-60332661 | Msa0611950:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | - | chr4_2:60332648-60332667 | Msa0611950:CDS | 55.0% |
| AGCTGTAGCAGCACAACCTG+AGG | + | chr4_2:60333379-60333398 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | - | chr4_2:60333386-60333405 | Msa0611950:intron | 55.0% | |
| GAACCTACCGGTGGGAACAC+AGG | - | chr4_2:60332315-60332334 | Msa0611950:intron | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | - | chr4_2:60332630-60332649 | Msa0611950:CDS | 60.0% | |
| AGCACTCCAGGAAGGCTTGC+TGG | - | chr4_2:60333151-60333170 | Msa0611950:intron | 60.0% | |
| CCTAGGAGACAACCCACCCA+AGG | + | chr4_2:60334060-60334079 | None:intergenic | 60.0% | |
| !! | CCTTGGGTGGGTTGTCTCCT+AGG | - | chr4_2:60334057-60334076 | Msa0611950:five_prime_UTR | 60.0% |
| CGTGCTCGTGCTCGCCCTAT+CGG | - | chr4_2:60331117-60331136 | Msa0611950:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60330866 | 60334232 | 60330866 | ID=Msa0611950;Name=Msa0611950 |
| chr4_2 | mRNA | 60330866 | 60334232 | 60330866 | ID=Msa0611950-mRNA-1;Parent=Msa0611950;Name=Msa0611950-mRNA-1;_AED=0.30;_eAED=0.30;_QI=209|1|1|1|1|1|9|442|366 |
| chr4_2 | exon | 60330866 | 60331400 | 60330866 | ID=Msa0611950-mRNA-1:exon:16255;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60331652 | 60331732 | 60331652 | ID=Msa0611950-mRNA-1:exon:16254;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60331926 | 60331985 | 60331926 | ID=Msa0611950-mRNA-1:exon:16253;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60332089 | 60332168 | 60332089 | ID=Msa0611950-mRNA-1:exon:16252;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60332264 | 60332315 | 60332264 | ID=Msa0611950-mRNA-1:exon:16251;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60332394 | 60332795 | 60332394 | ID=Msa0611950-mRNA-1:exon:16250;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60332913 | 60332970 | 60332913 | ID=Msa0611950-mRNA-1:exon:16249;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60333656 | 60333765 | 60333656 | ID=Msa0611950-mRNA-1:exon:16248;Parent=Msa0611950-mRNA-1 |
| chr4_2 | exon | 60333859 | 60334232 | 60333859 | ID=Msa0611950-mRNA-1:exon:16247;Parent=Msa0611950-mRNA-1 |
| chr4_2 | five_prime_UTR | 60334024 | 60334232 | 60334024 | ID=Msa0611950-mRNA-1:five_prime_utr;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60333859 | 60334023 | 60333859 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60333656 | 60333765 | 60333656 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60332913 | 60332970 | 60332913 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60332394 | 60332795 | 60332394 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60332264 | 60332315 | 60332264 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60332089 | 60332168 | 60332089 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60331926 | 60331985 | 60331926 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60331652 | 60331732 | 60331652 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | CDS | 60331308 | 60331400 | 60331308 | ID=Msa0611950-mRNA-1:cds;Parent=Msa0611950-mRNA-1 |
| chr4_2 | three_prime_UTR | 60330866 | 60331307 | 60330866 | ID=Msa0611950-mRNA-1:three_prime_utr;Parent=Msa0611950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
