Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409250 | XP_003600177.1 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 4.52e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409250 | sp|G7J032|PHBP_MEDTR | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 5.64e-109 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409250 | A0A396INQ3 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 2.16e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0160580 | Msa0409250 | 0.811926 | 5.484185e-51 | -8.615850e-47 |
| Msa0396700 | Msa0409250 | 0.804339 | 2.264794e-49 | -8.615850e-47 |
| Msa0403720 | Msa0409250 | -0.812264 | 4.626400e-51 | -8.615850e-47 |
| Msa0409250 | Msa0409490 | 0.814132 | 1.800320e-51 | -8.615850e-47 |
| Msa0409250 | Msa0431940 | -0.802122 | 6.516242e-49 | -8.615850e-47 |
| Msa0409250 | Msa0444400 | 0.800363 | 1.492579e-48 | -8.615850e-47 |
| Msa0409250 | Msa0449360 | 0.801476 | 8.842065e-49 | -8.615850e-47 |
| Msa0409250 | Msa0453970 | 0.971743 | 1.204778e-133 | -8.615850e-47 |
| Msa0409250 | Msa0456480 | -0.802193 | 6.300826e-49 | -8.615850e-47 |
| Msa0409250 | Msa0491800 | 0.810984 | 8.780738e-51 | -8.615850e-47 |
| Msa0409250 | Msa0532610 | 0.804577 | 2.020496e-49 | -8.615850e-47 |
| Msa0409250 | Msa0532670 | 0.812343 | 4.446670e-51 | -8.615850e-47 |
| Msa0409250 | Msa0532680 | 0.808910 | 2.454929e-50 | -8.615850e-47 |
| Msa0409250 | Msa0533510 | 0.801906 | 7.218189e-49 | -8.615850e-47 |
| Msa0409250 | Msa0535570 | 0.800163 | 1.639602e-48 | -8.615850e-47 |
| Msa0409250 | Msa0538440 | 0.811121 | 8.201887e-51 | -8.615850e-47 |
| Msa0409250 | Msa0543740 | 0.800488 | 1.407644e-48 | -8.615850e-47 |
| Msa0409250 | Msa0554660 | 0.812040 | 5.176821e-51 | -8.615850e-47 |
| Msa0409250 | Msa0589450 | 0.808065 | 3.719299e-50 | -8.615850e-47 |
| Msa0409250 | Msa0589720 | 0.800676 | 1.289031e-48 | -8.615850e-47 |
| Msa0409250 | Msa0589740 | 0.808797 | 2.595973e-50 | -8.615850e-47 |
| Msa0409250 | Msa0589750 | 0.806384 | 8.443604e-50 | -8.615850e-47 |
| Msa0409250 | Msa0604280 | 0.806023 | 1.006032e-49 | -8.615850e-47 |
| Msa0409250 | Msa0611950 | 0.810586 | 1.071063e-50 | -8.615850e-47 |
| Msa0409250 | Msa0623750 | 0.813291 | 2.757189e-51 | -8.615850e-47 |
| Msa0409250 | Msa0630850 | -0.824047 | 9.970615e-54 | -8.615850e-47 |
| Msa0409250 | Msa0634290 | 0.802473 | 5.517537e-49 | -8.615850e-47 |
| Msa0409250 | Msa0681880 | -0.821069 | 4.910872e-53 | -8.615850e-47 |
| Msa0409250 | Msa0682730 | 0.807470 | 4.977102e-50 | -8.615850e-47 |
| Msa0409250 | Msa0776340 | 0.814512 | 1.483430e-51 | -8.615850e-47 |
| Msa0409250 | Msa0793060 | -0.800119 | 1.673612e-48 | -8.615850e-47 |
| Msa0409250 | Msa0890210 | 0.804707 | 1.898586e-49 | -8.615850e-47 |
| Msa0409250 | Msa0896920 | 0.866232 | 3.314248e-65 | -8.615850e-47 |
| Msa0409250 | Msa0896950 | 0.802045 | 6.757470e-49 | -8.615850e-47 |
| Msa0409250 | Msa0913550 | 0.801192 | 1.011247e-48 | -8.615850e-47 |
| Msa0409250 | Msa0932900 | 0.803967 | 2.706990e-49 | -8.615850e-47 |
| Msa0409250 | Msa0951060 | 0.813879 | 2.046556e-51 | -8.615850e-47 |
| Msa0409250 | Msa0962290 | 0.819201 | 1.315067e-52 | -8.615850e-47 |
| Msa0409250 | Msa0970790 | 0.817392 | 3.376675e-52 | -8.615850e-47 |
| Msa0409250 | Msa0996980 | 0.846179 | 2.554657e-59 | -8.615850e-47 |
| Msa0409250 | Msa1046220 | 0.824995 | 5.967496e-54 | -8.615850e-47 |
| Msa0409250 | Msa1048390 | 0.812567 | 3.972224e-51 | -8.615850e-47 |
| Msa0409250 | Msa1061670 | 0.803297 | 3.728571e-49 | -8.615850e-47 |
| Msa0409250 | Msa1061760 | 0.809717 | 1.648000e-50 | -8.615850e-47 |
| Msa0409250 | Msa1064940 | 0.800771 | 1.232775e-48 | -8.615850e-47 |
| Msa0409250 | Msa1069440 | -0.802110 | 6.553273e-49 | -8.615850e-47 |
| Msa0409250 | Msa1079610 | -0.805171 | 1.518527e-49 | -8.615850e-47 |
| Msa0409250 | Msa1083100 | 0.810668 | 1.027874e-50 | -8.615850e-47 |
| Msa0409250 | Msa1087380 | 0.822458 | 2.344175e-53 | -8.615850e-47 |
| Msa0409250 | Msa1124440 | -0.803864 | 2.843849e-49 | -8.615850e-47 |
| Msa0409250 | Msa1138110 | 0.806737 | 7.114033e-50 | -8.615850e-47 |
| Msa0409250 | Msa1143250 | 0.804576 | 2.021349e-49 | -8.615850e-47 |
| Msa0409250 | Msa1150860 | 0.803945 | 2.736343e-49 | -8.615850e-47 |
| Msa0409250 | Msa1160540 | 0.802819 | 4.681681e-49 | -8.615850e-47 |
| Msa0409250 | Msa1194170 | 0.813030 | 3.145846e-51 | -8.615850e-47 |
| Msa0409250 | Msa1216370 | 0.812464 | 4.183943e-51 | -8.615850e-47 |
| Msa0409250 | Msa1216700 | -0.804522 | 2.075159e-49 | -8.615850e-47 |
| Msa0409250 | Msa1221170 | 0.816206 | 6.231271e-52 | -8.615850e-47 |
| Msa0409250 | Msa1258020 | 0.803996 | 2.669454e-49 | -8.615850e-47 |
| Msa0409250 | Msa1259560 | 0.811755 | 5.974588e-51 | -8.615850e-47 |
| Msa0409250 | Msa1299280 | 0.814136 | 1.796545e-51 | -8.615850e-47 |
| Msa0409250 | Msa1302010 | 0.803649 | 3.151444e-49 | -8.615850e-47 |
| Msa0409250 | Msa1323150 | 0.819352 | 1.214827e-52 | -8.615850e-47 |
| Msa0409250 | Msa1342400 | -0.805102 | 1.569705e-49 | -8.615850e-47 |
| Msa0409250 | Msa1368660 | -0.800997 | 1.108488e-48 | -8.615850e-47 |
| Msa0409250 | Msa1378950 | 0.807597 | 4.676455e-50 | -8.615850e-47 |
| Msa0409250 | Msa1401650 | 0.802523 | 5.387524e-49 | -8.615850e-47 |
| Msa0409250 | Msa1409600 | 0.804978 | 1.666532e-49 | -8.615850e-47 |
| Msa0409250 | Msa1445780 | 0.804364 | 2.238746e-49 | -8.615850e-47 |
| Msa0245660 | Msa0409250 | 0.805216 | 1.485479e-49 | -8.615850e-47 |
| Msa0274260 | Msa0409250 | 0.822563 | 2.215536e-53 | -8.615850e-47 |
| Msa0356200 | Msa0409250 | 0.818915 | 1.527639e-52 | -8.615850e-47 |
| Msa0356240 | Msa0409250 | 0.814775 | 1.297151e-51 | -8.615850e-47 |
| Msa0356250 | Msa0409250 | 0.815397 | 9.439934e-52 | -8.615850e-47 |
| Msa0356380 | Msa0409250 | 0.821612 | 3.680812e-53 | -8.615850e-47 |
| Msa0356410 | Msa0409250 | 0.824646 | 7.210136e-54 | -8.615850e-47 |
| Msa0360640 | Msa0409250 | 0.958094 | 5.497903e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0409250 | MtrunA17_Chr3g0100191 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 4.16e-110 | 309 |
| Msa0409250 | MtrunA17_Chr3g0100201 | 60.256 | 156 | 61 | 1 | 1 | 156 | 1 | 155 | 3.23e-61 | 186 |
| Msa0409250 | MtrunA17_Chr4g0067841 | 31.126 | 151 | 99 | 3 | 5 | 153 | 6 | 153 | 1.50e-11 | 58.9 |
| Msa0409250 | MtrunA17_Chr4g0039921 | 30.928 | 97 | 67 | 0 | 26 | 122 | 27 | 123 | 3.78e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATCTTTCACAATATT+TGG | 0.180335 | 3_2:+49759802 | None:intergenic |
| AACAGAAAAGATAGAATAAA+TGG | 0.190403 | 3_2:+49759209 | None:intergenic |
| TGCTCTTGGTCCTTATTTCT+AGG | 0.239239 | 3_2:+49759164 | None:intergenic |
| CCCTACATTTAGTGTTGTTT+GGG | 0.266669 | 3_2:+49759885 | None:intergenic |
| ACCCTACATTTAGTGTTGTT+TGG | 0.267738 | 3_2:+49759884 | None:intergenic |
| ACCTCCCTTTGATAATTTAC+TGG | 0.269590 | 3_2:+49759517 | None:intergenic |
| ACTATTGAAACCTAGAAATA+AGG | 0.314161 | 3_2:-49759174 | Msa0409250:three_prime_UTR |
| ATGTAGGGTTGGAGTCTCTC+TGG | 0.327104 | 3_2:-49759870 | Msa0409250:CDS |
| TCTCTGATATTGCTGAGAAT+TGG | 0.334808 | 3_2:+49759398 | None:intergenic |
| ACAATATTTGGTAGAACCTT+TGG | 0.336066 | 3_2:+49759814 | None:intergenic |
| AATTGATATGAGAATCCTTT+TGG | 0.336608 | 3_2:-49759129 | Msa0409250:three_prime_UTR |
| GATGAGTTATCCCATACAAT+TGG | 0.363483 | 3_2:-49759481 | Msa0409250:CDS |
| ATTCTCATATCAATTGCTAA+TGG | 0.378304 | 3_2:+49759137 | None:intergenic |
| CCACTTGGAGCCCAATTGTA+TGG | 0.392253 | 3_2:+49759470 | None:intergenic |
| TTCTCATATCAATTGCTAAT+GGG | 0.422908 | 3_2:+49759138 | None:intergenic |
| TTGCTAATGGGTGTTGCTCT+TGG | 0.424252 | 3_2:+49759150 | None:intergenic |
| ATTGAAGGGGATGGAGGGGT+TGG | 0.471026 | 3_2:-49759775 | Msa0409250:CDS |
| ACATTGATGAGTCATGATAA+AGG | 0.485079 | 3_2:-49759917 | Msa0409250:exon |
| TAAAGTGGACTCTGATGTCT+TGG | 0.487990 | 3_2:+49759303 | None:intergenic |
| AAGTAATTGAAGGGGATGGA+GGG | 0.491464 | 3_2:-49759780 | Msa0409250:CDS |
| AAGATCAAGTTAAGGCCAAA+AGG | 0.494172 | 3_2:+49759114 | None:intergenic |
| AATATCAGAGAATAAAACTT+TGG | 0.496609 | 3_2:-49759386 | Msa0409250:CDS |
| GATAGCCTCCTTCAACCACT+TGG | 0.497730 | 3_2:+49759455 | None:intergenic |
| CAAGTAATTGAAGGGGATGG+AGG | 0.498103 | 3_2:-49759781 | Msa0409250:CDS |
| ATGAGTTATCCCATACAATT+GGG | 0.498688 | 3_2:-49759480 | Msa0409250:CDS |
| TAGAACCTTTGGAACAACTA+AGG | 0.509620 | 3_2:+49759825 | None:intergenic |
| TTGCCCAAGATAAAATAAAG+TGG | 0.515677 | 3_2:+49759288 | None:intergenic |
| ACAGAAAAGATAGAATAAAT+GGG | 0.520286 | 3_2:+49759210 | None:intergenic |
| TGTAGGGTTGGAGTCTCTCT+GGG | 0.521899 | 3_2:-49759869 | Msa0409250:CDS |
| ATTGGGCTCCAAGTGGTTGA+AGG | 0.523194 | 3_2:-49759463 | Msa0409250:CDS |
| CCCAAACAACACTAAATGTA+GGG | 0.526439 | 3_2:-49759885 | Msa0409250:CDS |
| AACAACTAAGGTGATATCCT+TGG | 0.527317 | 3_2:+49759837 | None:intergenic |
| TATCTCCAGTAAATTATCAA+AGG | 0.528165 | 3_2:-49759522 | Msa0409250:CDS |
| ATCTCCAGTAAATTATCAAA+GGG | 0.531150 | 3_2:-49759521 | Msa0409250:CDS |
| GTGGACTCTGATGTCTTGGT+AGG | 0.535084 | 3_2:+49759307 | None:intergenic |
| TATCACCTTAGTTGTTCCAA+AGG | 0.536797 | 3_2:-49759830 | Msa0409250:CDS |
| CACTTGGAGCCCAATTGTAT+GGG | 0.538605 | 3_2:+49759471 | None:intergenic |
| ACCCAAACAACACTAAATGT+AGG | 0.541086 | 3_2:-49759886 | Msa0409250:CDS |
| AGTAATTGAAGGGGATGGAG+GGG | 0.556600 | 3_2:-49759779 | Msa0409250:CDS |
| AAAGATGTGCAAGTAATTGA+AGG | 0.557421 | 3_2:-49759790 | Msa0409250:CDS |
| GAAGGAGGCTATCTCAATCA+AGG | 0.560280 | 3_2:-49759445 | Msa0409250:CDS |
| GTGCAAGTAATTGAAGGGGA+TGG | 0.570134 | 3_2:-49759784 | Msa0409250:CDS |
| AACAACACTAAATGTAGGGT+TGG | 0.575968 | 3_2:-49759881 | Msa0409250:CDS |
| TCTCTGGGCTGCACAGTCCA+AGG | 0.592809 | 3_2:-49759854 | Msa0409250:CDS |
| AAGATGTGCAAGTAATTGAA+GGG | 0.598044 | 3_2:-49759789 | Msa0409250:CDS |
| TCCAGTAAATTATCAAAGGG+AGG | 0.626622 | 3_2:-49759518 | Msa0409250:CDS |
| GGGCTCCAAGTGGTTGAAGG+AGG | 0.646381 | 3_2:-49759460 | Msa0409250:CDS |
| CCATACAATTGGGCTCCAAG+TGG | 0.700462 | 3_2:-49759470 | Msa0409250:CDS |
| AGATGTGCAAGTAATTGAAG+GGG | 0.714548 | 3_2:-49759788 | Msa0409250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATTATTATATCTT+AGG | - | chr3_2:49759499-49759518 | Msa0409250:CDS | 10.0% |
| !! | TAATCAAATTATTATATCTT+AGG | - | chr3_2:49759499-49759518 | Msa0409250:CDS | 10.0% |
| !! | CAAAAAATTAAAGATGAGTT+TGG | + | chr3_2:49759299-49759318 | None:intergenic | 20.0% |
| !! | AATATCAGAGAATAAAACTT+TGG | - | chr3_2:49759660-49759679 | Msa0409250:intron | 20.0% |
| !! | CTAGAAAAATTTCTGTTAAA+TGG | - | chr3_2:49759781-49759800 | Msa0409250:CDS | 20.0% |
| !! | ACAGAAAAGATAGAATAAAT+GGG | + | chr3_2:49759839-49759858 | None:intergenic | 20.0% |
| !! | AACAGAAAAGATAGAATAAA+TGG | + | chr3_2:49759840-49759859 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAAGATGAGTT+TGG | + | chr3_2:49759299-49759318 | None:intergenic | 20.0% |
| !! | AATATCAGAGAATAAAACTT+TGG | - | chr3_2:49759660-49759679 | Msa0409250:intron | 20.0% |
| !! | CTAGAAAAATTTCTGTTAAA+TGG | - | chr3_2:49759781-49759800 | Msa0409250:CDS | 20.0% |
| !! | ACAGAAAAGATAGAATAAAT+GGG | + | chr3_2:49759839-49759858 | None:intergenic | 20.0% |
| !! | AACAGAAAAGATAGAATAAA+TGG | + | chr3_2:49759840-49759859 | None:intergenic | 20.0% |
| ! | TATCTCCAGTAAATTATCAA+AGG | - | chr3_2:49759524-49759543 | Msa0409250:CDS | 25.0% |
| ! | ATCTCCAGTAAATTATCAAA+GGG | - | chr3_2:49759525-49759544 | Msa0409250:CDS | 25.0% |
| !!! | AGTCCACTTTATTTTATCTT+GGG | - | chr3_2:49759755-49759774 | Msa0409250:CDS | 25.0% |
| ! | ACTATTGAAACCTAGAAATA+AGG | - | chr3_2:49759872-49759891 | Msa0409250:CDS | 25.0% |
| ! | TTCTCATATCAATTGCTAAT+GGG | + | chr3_2:49759911-49759930 | None:intergenic | 25.0% |
| ! | ATTCTCATATCAATTGCTAA+TGG | + | chr3_2:49759912-49759931 | None:intergenic | 25.0% |
| !! | AATTGATATGAGAATCCTTT+TGG | - | chr3_2:49759917-49759936 | Msa0409250:exon | 25.0% |
| ! | TATCTCCAGTAAATTATCAA+AGG | - | chr3_2:49759524-49759543 | Msa0409250:CDS | 25.0% |
| ! | ATCTCCAGTAAATTATCAAA+GGG | - | chr3_2:49759525-49759544 | Msa0409250:CDS | 25.0% |
| !!! | AGTCCACTTTATTTTATCTT+GGG | - | chr3_2:49759755-49759774 | Msa0409250:CDS | 25.0% |
| ! | ACTATTGAAACCTAGAAATA+AGG | - | chr3_2:49759872-49759891 | Msa0409250:CDS | 25.0% |
| ! | TTCTCATATCAATTGCTAAT+GGG | + | chr3_2:49759911-49759930 | None:intergenic | 25.0% |
| ! | ATTCTCATATCAATTGCTAA+TGG | + | chr3_2:49759912-49759931 | None:intergenic | 25.0% |
| !! | AATTGATATGAGAATCCTTT+TGG | - | chr3_2:49759917-49759936 | Msa0409250:exon | 25.0% |
| ACATTGATGAGTCATGATAA+AGG | - | chr3_2:49759129-49759148 | Msa0409250:three_prime_UTR | 30.0% | |
| ACAATATTTGGTAGAACCTT+TGG | + | chr3_2:49759235-49759254 | None:intergenic | 30.0% | |
| TGCACATCTTTCACAATATT+TGG | + | chr3_2:49759247-49759266 | None:intergenic | 30.0% | |
| AAAGATGTGCAAGTAATTGA+AGG | - | chr3_2:49759256-49759275 | Msa0409250:exon | 30.0% | |
| AAGATGTGCAAGTAATTGAA+GGG | - | chr3_2:49759257-49759276 | Msa0409250:exon | 30.0% | |
| !!! | CTCATCTTTAATTTTTTGCC+TGG | - | chr3_2:49759301-49759320 | Msa0409250:CDS | 30.0% |
| ! | CTATTTTACAACGTGTTTCA+GGG | + | chr3_2:49759397-49759416 | None:intergenic | 30.0% |
| ! | ACTATTTTACAACGTGTTTC+AGG | + | chr3_2:49759398-49759417 | None:intergenic | 30.0% |
| ATGAGTTATCCCATACAATT+GGG | - | chr3_2:49759566-49759585 | Msa0409250:intron | 30.0% | |
| !! | GTTTGACTTTTTCTTCTATG+AGG | + | chr3_2:49759720-49759739 | None:intergenic | 30.0% |
| !!! | GAGTCCACTTTATTTTATCT+TGG | - | chr3_2:49759754-49759773 | Msa0409250:CDS | 30.0% |
| TTGCCCAAGATAAAATAAAG+TGG | + | chr3_2:49759761-49759780 | None:intergenic | 30.0% | |
| TTTATCATGACTCATCAATG+TGG | + | chr3_2:49759130-49759149 | None:intergenic | 30.0% | |
| ACATTGATGAGTCATGATAA+AGG | - | chr3_2:49759129-49759148 | Msa0409250:three_prime_UTR | 30.0% | |
| ACAATATTTGGTAGAACCTT+TGG | + | chr3_2:49759235-49759254 | None:intergenic | 30.0% | |
| TGCACATCTTTCACAATATT+TGG | + | chr3_2:49759247-49759266 | None:intergenic | 30.0% | |
| AAAGATGTGCAAGTAATTGA+AGG | - | chr3_2:49759256-49759275 | Msa0409250:exon | 30.0% | |
| AAGATGTGCAAGTAATTGAA+GGG | - | chr3_2:49759257-49759276 | Msa0409250:exon | 30.0% | |
| !!! | CTCATCTTTAATTTTTTGCC+TGG | - | chr3_2:49759301-49759320 | Msa0409250:CDS | 30.0% |
| ! | CTATTTTACAACGTGTTTCA+GGG | + | chr3_2:49759397-49759416 | None:intergenic | 30.0% |
| ! | ACTATTTTACAACGTGTTTC+AGG | + | chr3_2:49759398-49759417 | None:intergenic | 30.0% |
| ATGAGTTATCCCATACAATT+GGG | - | chr3_2:49759566-49759585 | Msa0409250:intron | 30.0% | |
| !! | GTTTGACTTTTTCTTCTATG+AGG | + | chr3_2:49759720-49759739 | None:intergenic | 30.0% |
| !!! | GAGTCCACTTTATTTTATCT+TGG | - | chr3_2:49759754-49759773 | Msa0409250:CDS | 30.0% |
| TTGCCCAAGATAAAATAAAG+TGG | + | chr3_2:49759761-49759780 | None:intergenic | 30.0% | |
| ACCCAAACAACACTAAATGT+AGG | - | chr3_2:49759160-49759179 | Msa0409250:three_prime_UTR | 35.0% | |
| !! | CCCTACATTTAGTGTTGTTT+GGG | + | chr3_2:49759164-49759183 | None:intergenic | 35.0% |
| CCCAAACAACACTAAATGTA+GGG | - | chr3_2:49759161-49759180 | Msa0409250:three_prime_UTR | 35.0% | |
| ! | ACCCTACATTTAGTGTTGTT+TGG | + | chr3_2:49759165-49759184 | None:intergenic | 35.0% |
| AACAACACTAAATGTAGGGT+TGG | - | chr3_2:49759165-49759184 | Msa0409250:three_prime_UTR | 35.0% | |
| AACAACTAAGGTGATATCCT+TGG | + | chr3_2:49759212-49759231 | None:intergenic | 35.0% | |
| TATCACCTTAGTTGTTCCAA+AGG | - | chr3_2:49759216-49759235 | Msa0409250:three_prime_UTR | 35.0% | |
| !! | TAGAACCTTTGGAACAACTA+AGG | + | chr3_2:49759224-49759243 | None:intergenic | 35.0% |
| AGATGTGCAAGTAATTGAAG+GGG | - | chr3_2:49759258-49759277 | Msa0409250:CDS | 35.0% | |
| TGCAATCAAAATCTCGATGA+GGG | + | chr3_2:49759356-49759375 | None:intergenic | 35.0% | |
| ATGCAATCAAAATCTCGATG+AGG | + | chr3_2:49759357-49759376 | None:intergenic | 35.0% | |
| !!! | CATCGAGATTTTGATTGCAT+CGG | - | chr3_2:49759357-49759376 | Msa0409250:CDS | 35.0% |
| TCCAGTAAATTATCAAAGGG+AGG | - | chr3_2:49759528-49759547 | Msa0409250:CDS | 35.0% | |
| ! | ACCTCCCTTTGATAATTTAC+TGG | + | chr3_2:49759532-49759551 | None:intergenic | 35.0% |
| GATGAGTTATCCCATACAAT+TGG | - | chr3_2:49759565-49759584 | Msa0409250:intron | 35.0% | |
| TCTCTGATATTGCTGAGAAT+TGG | + | chr3_2:49759651-49759670 | None:intergenic | 35.0% | |
| ACCCAAACAACACTAAATGT+AGG | - | chr3_2:49759160-49759179 | Msa0409250:three_prime_UTR | 35.0% | |
| !! | CCCTACATTTAGTGTTGTTT+GGG | + | chr3_2:49759164-49759183 | None:intergenic | 35.0% |
| CCCAAACAACACTAAATGTA+GGG | - | chr3_2:49759161-49759180 | Msa0409250:three_prime_UTR | 35.0% | |
| ! | ACCCTACATTTAGTGTTGTT+TGG | + | chr3_2:49759165-49759184 | None:intergenic | 35.0% |
| AACAACACTAAATGTAGGGT+TGG | - | chr3_2:49759165-49759184 | Msa0409250:three_prime_UTR | 35.0% | |
| AACAACTAAGGTGATATCCT+TGG | + | chr3_2:49759212-49759231 | None:intergenic | 35.0% | |
| TATCACCTTAGTTGTTCCAA+AGG | - | chr3_2:49759216-49759235 | Msa0409250:three_prime_UTR | 35.0% | |
| !! | TAGAACCTTTGGAACAACTA+AGG | + | chr3_2:49759224-49759243 | None:intergenic | 35.0% |
| AGATGTGCAAGTAATTGAAG+GGG | - | chr3_2:49759258-49759277 | Msa0409250:CDS | 35.0% | |
| TGCAATCAAAATCTCGATGA+GGG | + | chr3_2:49759356-49759375 | None:intergenic | 35.0% | |
| ATGCAATCAAAATCTCGATG+AGG | + | chr3_2:49759357-49759376 | None:intergenic | 35.0% | |
| !!! | CATCGAGATTTTGATTGCAT+CGG | - | chr3_2:49759357-49759376 | Msa0409250:CDS | 35.0% |
| TCCAGTAAATTATCAAAGGG+AGG | - | chr3_2:49759528-49759547 | Msa0409250:CDS | 35.0% | |
| ! | ACCTCCCTTTGATAATTTAC+TGG | + | chr3_2:49759532-49759551 | None:intergenic | 35.0% |
| GATGAGTTATCCCATACAAT+TGG | - | chr3_2:49759565-49759584 | Msa0409250:intron | 35.0% | |
| TCTCTGATATTGCTGAGAAT+TGG | + | chr3_2:49759651-49759670 | None:intergenic | 35.0% | |
| AAGTAATTGAAGGGGATGGA+GGG | - | chr3_2:49759266-49759285 | Msa0409250:CDS | 40.0% | |
| TAAGTGTGCCTTCTCTCTTT+AGG | - | chr3_2:49759324-49759343 | Msa0409250:CDS | 40.0% | |
| ! | TAAAGTGGACTCTGATGTCT+TGG | + | chr3_2:49759746-49759765 | None:intergenic | 40.0% |
| ! | TGCTCTTGGTCCTTATTTCT+AGG | + | chr3_2:49759885-49759904 | None:intergenic | 40.0% |
| AAGTAATTGAAGGGGATGGA+GGG | - | chr3_2:49759266-49759285 | Msa0409250:CDS | 40.0% | |
| TAAGTGTGCCTTCTCTCTTT+AGG | - | chr3_2:49759324-49759343 | Msa0409250:CDS | 40.0% | |
| ! | TAAAGTGGACTCTGATGTCT+TGG | + | chr3_2:49759746-49759765 | None:intergenic | 40.0% |
| ! | TGCTCTTGGTCCTTATTTCT+AGG | + | chr3_2:49759885-49759904 | None:intergenic | 40.0% |
| GTGCAAGTAATTGAAGGGGA+TGG | - | chr3_2:49759262-49759281 | Msa0409250:CDS | 45.0% | |
| CAAGTAATTGAAGGGGATGG+AGG | - | chr3_2:49759265-49759284 | Msa0409250:CDS | 45.0% | |
| AGTAATTGAAGGGGATGGAG+GGG | - | chr3_2:49759267-49759286 | Msa0409250:CDS | 45.0% | |
| TGCCTTCTCTCTTTAGGTCA+TGG | - | chr3_2:49759330-49759349 | Msa0409250:CDS | 45.0% | |
| CACTTGGAGCCCAATTGTAT+GGG | + | chr3_2:49759578-49759597 | None:intergenic | 45.0% | |
| GAAGGAGGCTATCTCAATCA+AGG | - | chr3_2:49759601-49759620 | Msa0409250:intron | 45.0% | |
| !! | TTGCTAATGGGTGTTGCTCT+TGG | + | chr3_2:49759899-49759918 | None:intergenic | 45.0% |
| GTGCAAGTAATTGAAGGGGA+TGG | - | chr3_2:49759262-49759281 | Msa0409250:CDS | 45.0% | |
| CAAGTAATTGAAGGGGATGG+AGG | - | chr3_2:49759265-49759284 | Msa0409250:CDS | 45.0% | |
| AGTAATTGAAGGGGATGGAG+GGG | - | chr3_2:49759267-49759286 | Msa0409250:CDS | 45.0% | |
| TGCCTTCTCTCTTTAGGTCA+TGG | - | chr3_2:49759330-49759349 | Msa0409250:CDS | 45.0% | |
| CACTTGGAGCCCAATTGTAT+GGG | + | chr3_2:49759578-49759597 | None:intergenic | 45.0% | |
| GAAGGAGGCTATCTCAATCA+AGG | - | chr3_2:49759601-49759620 | Msa0409250:intron | 45.0% | |
| !! | TTGCTAATGGGTGTTGCTCT+TGG | + | chr3_2:49759899-49759918 | None:intergenic | 45.0% |
| ATGTAGGGTTGGAGTCTCTC+TGG | - | chr3_2:49759176-49759195 | Msa0409250:three_prime_UTR | 50.0% | |
| TGTAGGGTTGGAGTCTCTCT+GGG | - | chr3_2:49759177-49759196 | Msa0409250:three_prime_UTR | 50.0% | |
| ! | AGAGAGAAGGCACACTTACC+AGG | + | chr3_2:49759322-49759341 | None:intergenic | 50.0% |
| GGCCATGACCTAAAGAGAGA+AGG | + | chr3_2:49759335-49759354 | None:intergenic | 50.0% | |
| CCACTTGGAGCCCAATTGTA+TGG | + | chr3_2:49759579-49759598 | None:intergenic | 50.0% | |
| CCATACAATTGGGCTCCAAG+TGG | - | chr3_2:49759576-49759595 | Msa0409250:intron | 50.0% | |
| ATTGGGCTCCAAGTGGTTGA+AGG | - | chr3_2:49759583-49759602 | Msa0409250:intron | 50.0% | |
| GATAGCCTCCTTCAACCACT+TGG | + | chr3_2:49759594-49759613 | None:intergenic | 50.0% | |
| GTGGACTCTGATGTCTTGGT+AGG | + | chr3_2:49759742-49759761 | None:intergenic | 50.0% | |
| ATGTAGGGTTGGAGTCTCTC+TGG | - | chr3_2:49759176-49759195 | Msa0409250:three_prime_UTR | 50.0% | |
| TGTAGGGTTGGAGTCTCTCT+GGG | - | chr3_2:49759177-49759196 | Msa0409250:three_prime_UTR | 50.0% | |
| ! | AGAGAGAAGGCACACTTACC+AGG | + | chr3_2:49759322-49759341 | None:intergenic | 50.0% |
| GGCCATGACCTAAAGAGAGA+AGG | + | chr3_2:49759335-49759354 | None:intergenic | 50.0% | |
| CCACTTGGAGCCCAATTGTA+TGG | + | chr3_2:49759579-49759598 | None:intergenic | 50.0% | |
| CCATACAATTGGGCTCCAAG+TGG | - | chr3_2:49759576-49759595 | Msa0409250:intron | 50.0% | |
| ATTGGGCTCCAAGTGGTTGA+AGG | - | chr3_2:49759583-49759602 | Msa0409250:intron | 50.0% | |
| GATAGCCTCCTTCAACCACT+TGG | + | chr3_2:49759594-49759613 | None:intergenic | 50.0% | |
| GTGGACTCTGATGTCTTGGT+AGG | + | chr3_2:49759742-49759761 | None:intergenic | 50.0% | |
| ATTGAAGGGGATGGAGGGGT+TGG | - | chr3_2:49759271-49759290 | Msa0409250:CDS | 55.0% | |
| ATTGAAGGGGATGGAGGGGT+TGG | - | chr3_2:49759271-49759290 | Msa0409250:CDS | 55.0% | |
| TCTCTGGGCTGCACAGTCCA+AGG | - | chr3_2:49759192-49759211 | Msa0409250:three_prime_UTR | 60.0% | |
| GGGCTCCAAGTGGTTGAAGG+AGG | - | chr3_2:49759586-49759605 | Msa0409250:intron | 60.0% | |
| TCTCTGGGCTGCACAGTCCA+AGG | - | chr3_2:49759192-49759211 | Msa0409250:three_prime_UTR | 60.0% | |
| GGGCTCCAAGTGGTTGAAGG+AGG | - | chr3_2:49759586-49759605 | Msa0409250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 49759128 | 49759940 | 49759128 | ID=Msa0409250;Name=Msa0409250 |
| chr3_2 | mRNA | 49759128 | 49759940 | 49759128 | ID=Msa0409250-mRNA-1;Parent=Msa0409250;Name=Msa0409250-mRNA-1;_AED=0.22;_eAED=0.22;_QI=14|1|1|1|1|1|2|130|156 |
| chr3_2 | exon | 49759128 | 49759547 | 49759128 | ID=Msa0409250-mRNA-1:exon:9776;Parent=Msa0409250-mRNA-1 |
| chr3_2 | exon | 49759746 | 49759940 | 49759746 | ID=Msa0409250-mRNA-1:exon:9775;Parent=Msa0409250-mRNA-1 |
| chr3_2 | five_prime_UTR | 49759927 | 49759940 | 49759927 | ID=Msa0409250-mRNA-1:five_prime_utr;Parent=Msa0409250-mRNA-1 |
| chr3_2 | CDS | 49759746 | 49759926 | 49759746 | ID=Msa0409250-mRNA-1:cds;Parent=Msa0409250-mRNA-1 |
| chr3_2 | CDS | 49759258 | 49759547 | 49759258 | ID=Msa0409250-mRNA-1:cds;Parent=Msa0409250-mRNA-1 |
| chr3_2 | three_prime_UTR | 49759128 | 49759257 | 49759128 | ID=Msa0409250-mRNA-1:three_prime_utr;Parent=Msa0409250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
