AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403720 MtrunA17_Chr3g0103441 99.528 212 1 0 12 223 1 212 1.35e-161 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403720 AT5G19855.1 54.091 220 82 3 1 219 1 202 1.09e-81 243
Msa0403720 AT5G19855.2 45.679 162 69 3 1 161 1 144 1.81e-43 144

Find 76 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTAACCTTTATGCTAAA+TGG 0.110147 3_2:-34269467 Msa0403720:CDS
TTTATTAAATAACTACTTAT+AGG 0.180622 3_2:-34272709 Msa0403720:five_prime_UTR
TGAGATGAAGGATTTATAAT+TGG 0.183394 3_2:-34269018 Msa0403720:three_prime_UTR
TTATAAAACCACGTATATTT+AGG 0.215191 3_2:+34271407 None:intergenic
ATAAGTAGTTATTTAATAAA+AGG 0.234497 3_2:+34272712 None:intergenic
TTGGACCTCAATAATTTATA+TGG 0.247418 3_2:-34272895 Msa0403720:five_prime_UTR
ATGTGTCAATTTCCCGTAAC+AGG 0.276020 3_2:-34269119 Msa0403720:three_prime_UTR
TAATGGACTCTGTATTTAAA+AGG 0.281463 3_2:+34269053 None:intergenic
TTGACTCTCCATTCCCTTCC+AGG 0.282181 3_2:+34272344 None:intergenic
GTGGGAGCAATATCTGTTAT+TGG 0.291042 3_2:-34272548 Msa0403720:CDS
GCGCGGCGGCGGAAGAACTA+TGG 0.291206 3_2:-34272390 Msa0403720:CDS
CTTGTTGTTATTGTTATTGT+TGG 0.306414 3_2:-34272592 Msa0403720:five_prime_UTR
TCTCAAACAATTCAAAATAA+TGG 0.320527 3_2:+34269036 None:intergenic
AAGAGAAAGAGGAGGCAAAT+TGG 0.323215 3_2:+34272804 None:intergenic
CCTTGACCCATTTAGCATAA+AGG 0.329549 3_2:+34269460 None:intergenic
TTACGGGAAATTGACACATT+TGG 0.338762 3_2:+34269123 None:intergenic
GAGATGAAGGATTTATAATT+GGG 0.361430 3_2:-34269017 Msa0403720:three_prime_UTR
TTTGATGGGAAAGAAGCATT+TGG 0.380847 3_2:-34272417 Msa0403720:CDS
GACAGCAGCTCAGAATTAAT+TGG 0.381941 3_2:-34269242 Msa0403720:CDS
AAATCTGGTAATCCTGTTAC+GGG 0.397622 3_2:+34269107 None:intergenic
GCTTAACCTTTATGCTAAAT+GGG 0.410431 3_2:-34269466 Msa0403720:CDS
TTGAGATTCATATTAGTTGT+TGG 0.412533 3_2:+34272473 None:intergenic
TGTTATTGGTTCATCAATGA+TGG 0.412805 3_2:-34272534 Msa0403720:CDS
GAAGGTTGAAGAAGAGAAAG+AGG 0.415633 3_2:+34272793 None:intergenic
TAAATCTGGTAATCCTGTTA+CGG 0.416228 3_2:+34269106 None:intergenic
AGTTGGAACTTGTGTTGTTA+CGG 0.424087 3_2:+34272745 None:intergenic
CGCGGCGGCGGAAGAACTAT+GGG 0.427517 3_2:-34272389 Msa0403720:CDS
GTATTTGTGAGAGAGGAATA+TGG 0.428924 3_2:-34272570 Msa0403720:exon
CAATTTACATAATATAAATC+TGG 0.435763 3_2:+34269092 None:intergenic
GTTACCATTGTTAGTGAGCT+TGG 0.439389 3_2:-34272278 Msa0403720:CDS
GACTCATGGAGACAGTAATA+TGG 0.445142 3_2:-34269274 Msa0403720:CDS
AAGTAAACAAAAGGAGAAGA+AGG 0.447907 3_2:+34272836 None:intergenic
ACTAATATGAATCTCAAGAT+TGG 0.454557 3_2:-34272467 Msa0403720:CDS
AGAGGAGGCAAATTGGTGTA+AGG 0.454748 3_2:+34272811 None:intergenic
AGAAGCAACGCAGTAATGAT+AGG 0.467537 3_2:-34272304 Msa0403720:CDS
CGGATGAAGAGTTTGTTTGA+AGG 0.470233 3_2:+34272775 None:intergenic
TTCTGAGCTGCTGTCATCTG+AGG 0.484742 3_2:+34269250 None:intergenic
TGTAAGGAAAAGTAAACAAA+AGG 0.492271 3_2:+34272827 None:intergenic
TCAAATATCAGATGAAAACT+TGG 0.498143 3_2:-34269312 Msa0403720:CDS
ATGAATCTCAAGATTGGTTG+TGG 0.515787 3_2:-34272461 Msa0403720:CDS
CTAGGAATCAAACAAAAGGT+TGG 0.519851 3_2:+34269187 None:intergenic
TAGACTAGGAATCAAACAAA+AGG 0.523858 3_2:+34269183 None:intergenic
AGAGTACCTTCCCAAGCAAT+CGG 0.524539 3_2:+34269864 None:intergenic
TGAGCTTGGTGGTCAATATG+AGG 0.525773 3_2:-34272264 Msa0403720:CDS
GTTAACCATATAAATTATTG+AGG 0.525850 3_2:+34272890 None:intergenic
TAAAACCACGTATATTTAGG+TGG 0.529191 3_2:+34271410 None:intergenic
CATTTGGAAAAGCGCGGCGG+CGG 0.533131 3_2:-34272401 Msa0403720:CDS
GTTGATGAGGGAACGACTCA+TGG 0.541090 3_2:-34269288 Msa0403720:CDS
CTGAAAGAGTGATGTTGACT+CGG 0.544416 3_2:-34269488 Msa0403720:CDS
ATGAAAACTTGGAGTTGATG+AGG 0.546304 3_2:-34269301 Msa0403720:CDS
AGTAAACAAAAGGAGAAGAA+GGG 0.551413 3_2:+34272837 None:intergenic
GCTCAACTATTTCACGTACA+AGG 0.554693 3_2:-34271471 Msa0403720:CDS
ACCATTGTTAGTGAGCTTGG+TGG 0.561493 3_2:-34272275 Msa0403720:CDS
ATTGTTGGTATTTGTGAGAG+AGG 0.562373 3_2:-34272577 Msa0403720:five_prime_UTR
CACTGGTCCATGTTTGTGTG+TGG 0.571186 3_2:-34272504 Msa0403720:CDS
TGAAAACTTGGAGTTGATGA+GGG 0.575874 3_2:-34269300 Msa0403720:CDS
CCTTTATGCTAAATGGGTCA+AGG 0.576109 3_2:-34269460 Msa0403720:intron
TCTGAGCTGCTGTCATCTGA+GGG 0.576725 3_2:+34269251 None:intergenic
AAAACCACGTATATTTAGGT+GGG 0.578910 3_2:+34271411 None:intergenic
ACAAAAGGTTGGAAACAGAA+AGG 0.583898 3_2:+34269198 None:intergenic
TTACTGATCCTGGAAGGGAA+TGG 0.584500 3_2:-34272352 Msa0403720:CDS
CATTTGGAAACAATACATGT+TGG 0.587080 3_2:+34269139 None:intergenic
TTTGTGAGAGAGGAATATGG+TGG 0.587626 3_2:-34272567 Msa0403720:exon
GTATCAAACAAACCACAAGA+TGG 0.596691 3_2:-34269899 Msa0403720:CDS
TGTGTTGTTACGGTCAAAGA+CGG 0.603421 3_2:+34272755 None:intergenic
AGTGCATCCACACACAAACA+TGG 0.606637 3_2:+34272497 None:intergenic
TCAATGATGGACTCACACAC+TGG 0.620604 3_2:-34272521 Msa0403720:CDS
TTGTGAGAGAGGAATATGGT+GGG 0.625325 3_2:-34272566 Msa0403720:exon
GGTTGAAGAAGAGAAAGAGG+AGG 0.626905 3_2:+34272796 None:intergenic
ACCACCAAGCTCACTAACAA+TGG 0.632085 3_2:+34272274 None:intergenic
ATAAAGTTTACACCTAGACT+AGG 0.637143 3_2:+34269169 None:intergenic
AAGAAGCATTTGGAAAAGCG+CGG 0.684459 3_2:-34272407 Msa0403720:CDS
ATTTCACGTACAAGGCTGTG+AGG 0.686265 3_2:-34271463 Msa0403720:CDS
AAGCATTTGGAAAAGCGCGG+CGG 0.723101 3_2:-34272404 Msa0403720:CDS
GCGGCGGCGGAAGAACTATG+GGG 0.724394 3_2:-34272388 Msa0403720:CDS
TGAACCCACCTAAATATACG+TGG 0.753733 3_2:-34271415 Msa0403720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAATTTTTCTGT+TGG - chr3_2:34268996-34269015 Msa0403720:three_prime_UTR 10.0%
!! ATAAGTAGTTATTTAATAAA+AGG + chr3_2:34269211-34269230 None:intergenic 10.0%
!! TTTATTAAATAACTACTTAT+AGG - chr3_2:34269211-34269230 Msa0403720:three_prime_UTR 10.0%
!!! TTTGTATTTAAAATCTTATT+AGG - chr3_2:34269879-34269898 Msa0403720:CDS 10.0%
!!! CTTTTATATAAATTAGAATA+TGG - chr3_2:34270320-34270339 Msa0403720:intron 10.0%
!! TTAAAAGTAGAAAAAAAAAA+AGG + chr3_2:34271509-34271528 None:intergenic 10.0%
!! ATTAATATTGTTAAACAATA+TGG + chr3_2:34272550-34272569 None:intergenic 10.0%
!! AATAGAAAACATTATATTCA+AGG + chr3_2:34270581-34270600 None:intergenic 15.0%
!! TTCAAATTCAAATGTATTAT+TGG + chr3_2:34272345-34272364 None:intergenic 15.0%
!! AAATGAATATGAATTATTCA+TGG + chr3_2:34272391-34272410 None:intergenic 15.0%
!! CAATTTACATAATATAAATC+TGG + chr3_2:34272831-34272850 None:intergenic 15.0%
!! GTTAACCATATAAATTATTG+AGG + chr3_2:34269033-34269052 None:intergenic 20.0%
!!! TAACATGATCTAAATTTTGT+TGG - chr3_2:34269703-34269722 Msa0403720:intron 20.0%
!! ATAGTTATAGCATCAATATT+AGG + chr3_2:34269922-34269941 None:intergenic 20.0%
!! CATATAAAGATTAAAAGTTG+AGG + chr3_2:34270081-34270100 None:intergenic 20.0%
!!! AAGTACATTCATATTTCTAA+TGG + chr3_2:34270159-34270178 None:intergenic 20.0%
!! AATTCTATAGTTCATAGTTA+CGG - chr3_2:34270227-34270246 Msa0403720:intron 20.0%
!! TTATAAAACCACGTATATTT+AGG + chr3_2:34270516-34270535 None:intergenic 20.0%
!! TTTGACCAATTATCTATTTA+AGG + chr3_2:34271190-34271209 None:intergenic 20.0%
!! GATAGATGAAAGAATTATTT+AGG + chr3_2:34271401-34271420 None:intergenic 20.0%
!!! TTTTAAATCAAACATGAAAC+AGG - chr3_2:34271752-34271771 Msa0403720:intron 20.0%
!!! AACATCAACTTTTTTCTTAA+AGG + chr3_2:34271881-34271900 None:intergenic 20.0%
!! AAGTAATTACCATACTATAT+GGG + chr3_2:34271957-34271976 None:intergenic 20.0%
!! TAAGTAATTACCATACTATA+TGG + chr3_2:34271958-34271977 None:intergenic 20.0%
!!! ATTTATGTTTTGTTCTATGT+TGG - chr3_2:34271988-34272007 Msa0403720:intron 20.0%
!! GATGAAATGAATAATAACTA+GGG + chr3_2:34272092-34272111 None:intergenic 20.0%
!! AGATGAAATGAATAATAACT+AGG + chr3_2:34272093-34272112 None:intergenic 20.0%
!! ATAATTCATATTCATTTGAC+AGG - chr3_2:34272394-34272413 Msa0403720:CDS 20.0%
!!! CAAATTATTTTACATGTCTT+TGG + chr3_2:34272515-34272534 None:intergenic 20.0%
!!! ACATGTAAAATAATTTGTGA+AGG - chr3_2:34272518-34272537 Msa0403720:CDS 20.0%
!! TCTCAAACAATTCAAAATAA+TGG + chr3_2:34272887-34272906 None:intergenic 20.0%
! TTGGACCTCAATAATTTATA+TGG - chr3_2:34269025-34269044 Msa0403720:three_prime_UTR 25.0%
! TGTAAGGAAAAGTAAACAAA+AGG + chr3_2:34269096-34269115 None:intergenic 25.0%
!! TAAAAGGTATGCAAAAAAGT+TGG + chr3_2:34269195-34269214 None:intergenic 25.0%
!!! CTTGTTGTTATTGTTATTGT+TGG - chr3_2:34269328-34269347 Msa0403720:CDS 25.0%
! TTGAGATTCATATTAGTTGT+TGG + chr3_2:34269450-34269469 None:intergenic 25.0%
! ACTAATATGAATCTCAAGAT+TGG - chr3_2:34269453-34269472 Msa0403720:intron 25.0%
!!! AACATTTTTTGAGTCAAGAT+TGG - chr3_2:34269839-34269858 Msa0403720:intron 25.0%
! AAATCTATTAATCACTGACA+CGG - chr3_2:34269962-34269981 Msa0403720:intron 25.0%
! AAAAGTTGAGGAAATACAAA+AGG + chr3_2:34270069-34270088 None:intergenic 25.0%
! AATGATCATTATTGAACAGA+AGG + chr3_2:34270194-34270213 None:intergenic 25.0%
! GTAAGTGAATTCTTTATTCT+AGG - chr3_2:34270536-34270555 Msa0403720:intron 25.0%
! ATACATGATGACTCTAATAT+AGG - chr3_2:34270628-34270647 Msa0403720:intron 25.0%
!! GAGCTCATAATTTTGTTAAA+AGG - chr3_2:34270975-34270994 Msa0403720:intron 25.0%
! AAACAACATTGGAAAAATCT+TGG + chr3_2:34271028-34271047 None:intergenic 25.0%
!!! AGGGAAAAAAAGTGTTAAAA+AGG + chr3_2:34271077-34271096 None:intergenic 25.0%
! TCCTTCCTTAAATAGATAAT+TGG - chr3_2:34271182-34271201 Msa0403720:intron 25.0%
! ACCAATTATCTATTTAAGGA+AGG + chr3_2:34271186-34271205 None:intergenic 25.0%
! ATTATGTGTTGAACAAAAAG+AGG - chr3_2:34271537-34271556 Msa0403720:intron 25.0%
! TTATGTGTTGAACAAAAAGA+GGG - chr3_2:34271538-34271557 Msa0403720:intron 25.0%
! AATTGCAAATGTTAGTATGT+TGG + chr3_2:34271643-34271662 None:intergenic 25.0%
!! GTTTGATTTAAAAGTAGACA+TGG + chr3_2:34271745-34271764 None:intergenic 25.0%
!! TTTTACAATCCCATATAGTA+TGG - chr3_2:34271945-34271964 Msa0403720:intron 25.0%
!!! TGAGTATAGCTATATTTTAG+TGG + chr3_2:34272131-34272150 None:intergenic 25.0%
!! AGTTAATCAGATGCAAATTT+TGG + chr3_2:34272224-34272243 None:intergenic 25.0%
! TCAAATATCAGATGAAAACT+TGG - chr3_2:34272608-34272627 Msa0403720:five_prime_UTR 25.0%
!!! TAATGGACTCTGTATTTAAA+AGG + chr3_2:34272870-34272889 None:intergenic 25.0%
!!! TTTTGAATTGTTTGAGATGA+AGG - chr3_2:34272890-34272909 Msa0403720:five_prime_UTR 25.0%
! TGAGATGAAGGATTTATAAT+TGG - chr3_2:34272902-34272921 Msa0403720:five_prime_UTR 25.0%
! GAGATGAAGGATTTATAATT+GGG - chr3_2:34272903-34272922 Msa0403720:five_prime_UTR 25.0%
! ATTTTTCTGTTGGACAATCT+TGG - chr3_2:34269006-34269025 Msa0403720:three_prime_UTR 30.0%
!!! AGGGTGTGAGATTTTTTTAA+GGG + chr3_2:34269067-34269086 None:intergenic 30.0%
!!! AAGGGTGTGAGATTTTTTTA+AGG + chr3_2:34269068-34269087 None:intergenic 30.0%
AGTAAACAAAAGGAGAAGAA+GGG + chr3_2:34269086-34269105 None:intergenic 30.0%
AAGTAAACAAAAGGAGAAGA+AGG + chr3_2:34269087-34269106 None:intergenic 30.0%
!! TGTTATTGGTTCATCAATGA+TGG - chr3_2:34269386-34269405 Msa0403720:intron 30.0%
! TGTTTTGTGGAAGAATTTGA+TGG - chr3_2:34269488-34269507 Msa0403720:CDS 30.0%
! GTTTTGTGGAAGAATTTGAT+GGG - chr3_2:34269489-34269508 Msa0403720:CDS 30.0%
!! CACTTTTGAGGATGTTAAAA+CGG - chr3_2:34269680-34269699 Msa0403720:intron 30.0%
TGTTACAAACATTGAATCAG+AGG + chr3_2:34269755-34269774 None:intergenic 30.0%
! GATGAGTTGTTAATTTGAGA+TGG + chr3_2:34270255-34270274 None:intergenic 30.0%
TAGCAACAAAATTGTGATAG+TGG + chr3_2:34270363-34270382 None:intergenic 30.0%
AAAACCACGTATATTTAGGT+GGG + chr3_2:34270512-34270531 None:intergenic 30.0%
TAAAACCACGTATATTTAGG+TGG + chr3_2:34270513-34270532 None:intergenic 30.0%
! ATGTTTTCTATTTAGACGCA+TGG - chr3_2:34270589-34270608 Msa0403720:intron 30.0%
! GAGTGTCTAGAAAAGTTTTA+TGG + chr3_2:34270685-34270704 None:intergenic 30.0%
!! AATTTGCTTTTATGTCTGAG+AGG + chr3_2:34270814-34270833 None:intergenic 30.0%
! CAAAATTGCTCAATTTTGTC+CGG + chr3_2:34270886-34270905 None:intergenic 30.0%
TGATCAATGACAATGCAATT+GGG + chr3_2:34271053-34271072 None:intergenic 30.0%
ATGATCAATGACAATGCAAT+TGG + chr3_2:34271054-34271073 None:intergenic 30.0%
!! TTCTAGAATCAGAAGAAAGA+AGG - chr3_2:34271101-34271120 Msa0403720:intron 30.0%
TCTAATATGCTAGACATTAG+AGG + chr3_2:34271144-34271163 None:intergenic 30.0%
AATTGGTCAAATGCATCTAA+AGG - chr3_2:34271199-34271218 Msa0403720:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr3_2:34271357-34271376 None:intergenic 30.0%
!! GTTTTTCGTTTTTCCCAAAA+TGG - chr3_2:34271230-34271249 Msa0403720:intron 30.0%
! GAAACTTAAAGGACCATTTT+GGG + chr3_2:34271246-34271265 None:intergenic 30.0%
! TGAAACTTAAAGGACCATTT+TGG + chr3_2:34271247-34271266 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr3_2:34271297-34271316 None:intergenic 30.0%
! AAGTGTTAAAGGACTTGTTT+GGG + chr3_2:34271275-34271294 None:intergenic 30.0%
AAGTCCTTTAACACTTGTTT+GGG - chr3_2:34271279-34271298 Msa0403720:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr3_2:34271297-34271316 Msa0403720:intron 30.0%
! TGAAACTTAAAGGACTTGTT+TGG - chr3_2:34271307-34271326 Msa0403720:intron 30.0%
! GAAACTTAAAGGACTTGTTT+GGG - chr3_2:34271308-34271327 Msa0403720:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr3_2:34271297-34271316 Msa0403720:intron 30.0%
TGAAACTTAAAGGATCACTT+TGG - chr3_2:34271336-34271355 Msa0403720:intron 30.0%
GAAACTTAAAGGATCACTTT+GGG - chr3_2:34271337-34271356 Msa0403720:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr3_2:34271357-34271376 Msa0403720:intron 30.0%
TTTAGGTCAAATGCATCTAA+AGG + chr3_2:34271384-34271403 None:intergenic 30.0%
TATGTGTTGAACAAAAAGAG+GGG - chr3_2:34271539-34271558 Msa0403720:intron 30.0%
TCAAAAGAAGTTAAAGGTCT+AGG - chr3_2:34271593-34271612 Msa0403720:intron 30.0%
CAAAAGAAGTTAAAGGTCTA+GGG - chr3_2:34271594-34271613 Msa0403720:intron 30.0%
CAAAAAGAAAATGAACACGA+CGG + chr3_2:34271716-34271735 None:intergenic 30.0%
!!! AGTACTTCATTTTTTGATCC+TGG - chr3_2:34271814-34271833 Msa0403720:intron 30.0%
ATTTGTCCTTTAATCAGCTT+AGG - chr3_2:34271850-34271869 Msa0403720:intron 30.0%
! ATAAAACGTTTTCCATCTTG+TGG + chr3_2:34272036-34272055 None:intergenic 30.0%
! ATGCAAATTTTGGATACTGA+GGG + chr3_2:34272214-34272233 None:intergenic 30.0%
GCTTAACCTTTATGCTAAAT+GGG - chr3_2:34272454-34272473 Msa0403720:CDS 30.0%
TAGACTAGGAATCAAACAAA+AGG + chr3_2:34272740-34272759 None:intergenic 30.0%
!! TTTTGTTTGATTCCTAGTCT+AGG - chr3_2:34272739-34272758 Msa0403720:five_prime_UTR 30.0%
ATAAAGTTTACACCTAGACT+AGG + chr3_2:34272754-34272773 None:intergenic 30.0%
CATTTGGAAACAATACATGT+TGG + chr3_2:34272784-34272803 None:intergenic 30.0%
TAAATCTGGTAATCCTGTTA+CGG + chr3_2:34272817-34272836 None:intergenic 30.0%
!!! GATTTTTTTAAGGGTGTGTG+TGG + chr3_2:34269058-34269077 None:intergenic 35.0%
! AGTTGGAACTTGTGTTGTTA+CGG + chr3_2:34269178-34269197 None:intergenic 35.0%
AACGTACACAGATGAAAAAG+TGG + chr3_2:34269295-34269314 None:intergenic 35.0%
ATTGTTGGTATTTGTGAGAG+AGG - chr3_2:34269343-34269362 Msa0403720:intron 35.0%
GTATTTGTGAGAGAGGAATA+TGG - chr3_2:34269350-34269369 Msa0403720:intron 35.0%
! ATGAATCTCAAGATTGGTTG+TGG - chr3_2:34269459-34269478 Msa0403720:intron 35.0%
!! TTTGATGGGAAAGAAGCATT+TGG - chr3_2:34269503-34269522 Msa0403720:CDS 35.0%
! AGTAGTTCTTTTACTGATCC+TGG - chr3_2:34269558-34269577 Msa0403720:intron 35.0%
! TTCTTTTACTGATCCTGGAA+GGG - chr3_2:34269563-34269582 Msa0403720:intron 35.0%
! TCAATATGAGGACACTTTTG+AGG - chr3_2:34269668-34269687 Msa0403720:intron 35.0%
CACCTTATATGACACTGATA+CGG - chr3_2:34269992-34270011 Msa0403720:intron 35.0%
ATCCGTATCAGTGTCATATA+AGG + chr3_2:34269997-34270016 None:intergenic 35.0%
GAGACTAAGTAAAGAGACTT+AGG + chr3_2:34270849-34270868 None:intergenic 35.0%
CTGCTCTATAAGAACAAGAA+GGG + chr3_2:34270915-34270934 None:intergenic 35.0%
ATGAGCTCAAAGCAAATGTT+GGG + chr3_2:34270963-34270982 None:intergenic 35.0%
TATGAGCTCAAAGCAAATGT+TGG + chr3_2:34270964-34270983 None:intergenic 35.0%
AAATCTTGGAGTAGAGACAT+TGG + chr3_2:34271014-34271033 None:intergenic 35.0%
!! CTTCTGATTCTAGAACACAA+GGG + chr3_2:34271096-34271115 None:intergenic 35.0%
!! TCTTCTGATTCTAGAACACA+AGG + chr3_2:34271097-34271116 None:intergenic 35.0%
! CAAGTGTTAAAGGACTTGTT+TGG + chr3_2:34271276-34271295 None:intergenic 35.0%
CAAGTCCTTTAACACTTGTT+TGG - chr3_2:34271278-34271297 Msa0403720:intron 35.0%
AAGTCCCAAACAAGTGTTAA+AGG + chr3_2:34271286-34271305 None:intergenic 35.0%
! TGATGAAGAAGGTAGAGTTT+TGG + chr3_2:34271444-34271463 None:intergenic 35.0%
AAGTGTATGAGTGATGAAGA+AGG + chr3_2:34271455-34271474 None:intergenic 35.0%
TGATCCAAAACCTAGACAAA+CGG - chr3_2:34271479-34271498 Msa0403720:CDS 35.0%
TTGAACAAAAAGAGGGGAAT+GGG - chr3_2:34271545-34271564 Msa0403720:intron 35.0%
AAGGGGTCAAAAGAAGTTAA+AGG - chr3_2:34271587-34271606 Msa0403720:intron 35.0%
! TAAAGGTCTAGGGTTCAAAT+CGG - chr3_2:34271604-34271623 Msa0403720:intron 35.0%
GTGTAACCTAAGCTGATTAA+AGG + chr3_2:34271859-34271878 None:intergenic 35.0%
GTATCAAACAAACCACAAGA+TGG - chr3_2:34272021-34272040 Msa0403720:intron 35.0%
! AAACGTTTTATCCGATTGCT+TGG - chr3_2:34272045-34272064 Msa0403720:intron 35.0%
! AACGTTTTATCCGATTGCTT+GGG - chr3_2:34272046-34272065 Msa0403720:intron 35.0%
GGATACTGAGGGTAAAAAAA+TGG + chr3_2:34272203-34272222 None:intergenic 35.0%
! GATGCAAATTTTGGATACTG+AGG + chr3_2:34272215-34272234 None:intergenic 35.0%
GTCTTGCGAATGGAAAAATT+AGG + chr3_2:34272295-34272314 None:intergenic 35.0%
GGCTTAACCTTTATGCTAAA+TGG - chr3_2:34272453-34272472 Msa0403720:CDS 35.0%
!! ATGAAAACTTGGAGTTGATG+AGG - chr3_2:34272619-34272638 Msa0403720:five_prime_UTR 35.0%
!! TGAAAACTTGGAGTTGATGA+GGG - chr3_2:34272620-34272639 Msa0403720:five_prime_UTR 35.0%
ACAAAAGGTTGGAAACAGAA+AGG + chr3_2:34272725-34272744 None:intergenic 35.0%
CTAGGAATCAAACAAAAGGT+TGG + chr3_2:34272736-34272755 None:intergenic 35.0%
TTACGGGAAATTGACACATT+TGG + chr3_2:34272800-34272819 None:intergenic 35.0%
AAATCTGGTAATCCTGTTAC+GGG + chr3_2:34272816-34272835 None:intergenic 35.0%
AAGAGAAAGAGGAGGCAAAT+TGG + chr3_2:34269119-34269138 None:intergenic 40.0%
GAAGGTTGAAGAAGAGAAAG+AGG + chr3_2:34269130-34269149 None:intergenic 40.0%
! CGGATGAAGAGTTTGTTTGA+AGG + chr3_2:34269148-34269167 None:intergenic 40.0%
! TGTGTTGTTACGGTCAAAGA+CGG + chr3_2:34269168-34269187 None:intergenic 40.0%
TTTGTGAGAGAGGAATATGG+TGG - chr3_2:34269353-34269372 Msa0403720:intron 40.0%
TTGTGAGAGAGGAATATGGT+GGG - chr3_2:34269354-34269373 Msa0403720:intron 40.0%
GTGGGAGCAATATCTGTTAT+TGG - chr3_2:34269372-34269391 Msa0403720:intron 40.0%
!!! GTTGTGGAGATGTTGTTTTG+TGG - chr3_2:34269475-34269494 Msa0403720:CDS 40.0%
!! AAGAAGCATTTGGAAAAGCG+CGG - chr3_2:34269513-34269532 Msa0403720:intron 40.0%
! GTTCTTTTACTGATCCTGGA+AGG - chr3_2:34269562-34269581 Msa0403720:intron 40.0%
AGAAGCAACGCAGTAATGAT+AGG - chr3_2:34269616-34269635 Msa0403720:intron 40.0%
GTTACCATTGTTAGTGAGCT+TGG - chr3_2:34269642-34269661 Msa0403720:intron 40.0%
GCTCAACTATTTCACGTACA+AGG - chr3_2:34270449-34270468 Msa0403720:intron 40.0%
TGAACCCACCTAAATATACG+TGG - chr3_2:34270505-34270524 Msa0403720:intron 40.0%
TCCTAATCCCTTTCGTCTTA+AGG - chr3_2:34270654-34270673 Msa0403720:intron 40.0%
CCTAATCCCTTTCGTCTTAA+GGG - chr3_2:34270655-34270674 Msa0403720:intron 40.0%
GGAAAACCCTTAAGACGAAA+GGG + chr3_2:34270664-34270683 None:intergenic 40.0%
TGGAAAACCCTTAAGACGAA+AGG + chr3_2:34270665-34270684 None:intergenic 40.0%
CCTGCTCTATAAGAACAAGA+AGG + chr3_2:34270916-34270935 None:intergenic 40.0%
CCTTCTTGTTCTTATAGAGC+AGG - chr3_2:34270913-34270932 Msa0403720:intron 40.0%
GCAATTGGGTCAAACAACAT+TGG + chr3_2:34271039-34271058 None:intergenic 40.0%
!! ATTGCCGTTTGTCTAGGTTT+TGG + chr3_2:34271486-34271505 None:intergenic 40.0%
! AAAAGGATTGCCGTTTGTCT+AGG + chr3_2:34271492-34271511 None:intergenic 40.0%
GTTGAACAAAAAGAGGGGAA+TGG - chr3_2:34271544-34271563 Msa0403720:intron 40.0%
TAGCTTACTTGGTTGAGCTA+AGG - chr3_2:34271568-34271587 Msa0403720:intron 40.0%
AGCTTACTTGGTTGAGCTAA+GGG - chr3_2:34271569-34271588 Msa0403720:intron 40.0%
CAAATCGACTGAGATATACC+AGG + chr3_2:34271835-34271854 None:intergenic 40.0%
! TTTTATCCGATTGCTTGGGA+AGG - chr3_2:34272050-34272069 Msa0403720:intron 40.0%
TGCATCTGATTAACTCGAGT+CGG - chr3_2:34272229-34272248 Msa0403720:intron 40.0%
! CTGAAAGAGTGATGTTGACT+CGG - chr3_2:34272432-34272451 Msa0403720:CDS 40.0%
CCTTGACCCATTTAGCATAA+AGG + chr3_2:34272463-34272482 None:intergenic 40.0%
CCTTTATGCTAAATGGGTCA+AGG - chr3_2:34272460-34272479 Msa0403720:CDS 40.0%
TGCTAAATGGGTCAAGGTAA+TGG - chr3_2:34272466-34272485 Msa0403720:CDS 40.0%
GACTCATGGAGACAGTAATA+TGG - chr3_2:34272646-34272665 Msa0403720:five_prime_UTR 40.0%
GACAGCAGCTCAGAATTAAT+TGG - chr3_2:34272678-34272697 Msa0403720:five_prime_UTR 40.0%
ATGTGTCAATTTCCCGTAAC+AGG - chr3_2:34272801-34272820 Msa0403720:five_prime_UTR 40.0%
AGAGGAGGCAAATTGGTGTA+AGG + chr3_2:34269112-34269131 None:intergenic 45.0%
GGTTGAAGAAGAGAAAGAGG+AGG + chr3_2:34269127-34269146 None:intergenic 45.0%
!! TCAATGATGGACTCACACAC+TGG - chr3_2:34269399-34269418 Msa0403720:intron 45.0%
AGTGCATCCACACACAAACA+TGG + chr3_2:34269426-34269445 None:intergenic 45.0%
TTACTGATCCTGGAAGGGAA+TGG - chr3_2:34269568-34269587 Msa0403720:intron 45.0%
ACCATTGTTAGTGAGCTTGG+TGG - chr3_2:34269645-34269664 Msa0403720:intron 45.0%
ACCACCAAGCTCACTAACAA+TGG + chr3_2:34269649-34269668 None:intergenic 45.0%
! TGAGCTTGGTGGTCAATATG+AGG - chr3_2:34269656-34269675 Msa0403720:intron 45.0%
ATTTCACGTACAAGGCTGTG+AGG - chr3_2:34270457-34270476 Msa0403720:intron 45.0%
! GACGCATGGTAAGTGTGTTT+TGG - chr3_2:34270603-34270622 Msa0403720:intron 45.0%
CCCTTAAGACGAAAGGGATT+AGG + chr3_2:34270658-34270677 None:intergenic 45.0%
TGCGATCGAGCGATATCAAA+TGG + chr3_2:34270759-34270778 None:intergenic 45.0%
TTGTCCGGCAAGTGTTTGAA+CGG + chr3_2:34270871-34270890 None:intergenic 45.0%
GCTTACTTGGTTGAGCTAAG+GGG - chr3_2:34271570-34271589 Msa0403720:intron 45.0%
! AGAGTACCTTCCCAAGCAAT+CGG + chr3_2:34272059-34272078 None:intergenic 45.0%
TCAGAATCGAGTCTTGCGAA+TGG + chr3_2:34272305-34272324 None:intergenic 45.0%
CACTGGTCCATGTTTGTGTG+TGG - chr3_2:34269416-34269435 Msa0403720:intron 50.0%
! AAGCATTTGGAAAAGCGCGG+CGG - chr3_2:34269516-34269535 Msa0403720:intron 50.0%
TTGACTCTCCATTCCCTTCC+AGG + chr3_2:34269579-34269598 None:intergenic 50.0%
GTCTCCGTTCAAACACTTGC+CGG - chr3_2:34270864-34270883 Msa0403720:intron 50.0%
AGGGGAATGGGTAGCTTACT+TGG - chr3_2:34271557-34271576 Msa0403720:intron 50.0%
! GTTGATGAGGGAACGACTCA+TGG - chr3_2:34272632-34272651 Msa0403720:five_prime_UTR 50.0%
TCTGAGCTGCTGTCATCTGA+GGG + chr3_2:34272672-34272691 None:intergenic 50.0%
TTCTGAGCTGCTGTCATCTG+AGG + chr3_2:34272673-34272692 None:intergenic 50.0%
! CATTTGGAAAAGCGCGGCGG+CGG - chr3_2:34269519-34269538 Msa0403720:intron 60.0%
CGCGGCGGCGGAAGAACTAT+GGG - chr3_2:34269531-34269550 Msa0403720:intron 65.0%
GCGGCGGCGGAAGAACTATG+GGG - chr3_2:34269532-34269551 Msa0403720:intron 65.0%
GCGCGGCGGCGGAAGAACTA+TGG - chr3_2:34269530-34269549 Msa0403720:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34268982 34272960 34268982 ID=Msa0403720;Name=Msa0403720
chr3_2 mRNA 34268982 34272960 34268982 ID=Msa0403720-mRNA-1;Parent=Msa0403720;Name=Msa0403720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=387|1|1|1|1|1|5|256|223
chr3_2 exon 34268982 34269360 34268982 ID=Msa0403720-mRNA-1:exon:6813;Parent=Msa0403720-mRNA-1
chr3_2 exon 34269461 34269526 34269461 ID=Msa0403720-mRNA-1:exon:6812;Parent=Msa0403720-mRNA-1
chr3_2 exon 34269871 34269928 34269871 ID=Msa0403720-mRNA-1:exon:6811;Parent=Msa0403720-mRNA-1
chr3_2 exon 34271407 34271498 34271407 ID=Msa0403720-mRNA-1:exon:6810;Parent=Msa0403720-mRNA-1
chr3_2 exon 34272241 34272960 34272241 ID=Msa0403720-mRNA-1:exon:6809;Parent=Msa0403720-mRNA-1
chr3_2 five_prime_UTR 34272574 34272960 34272574 ID=Msa0403720-mRNA-1:five_prime_utr;Parent=Msa0403720-mRNA-1
chr3_2 CDS 34272241 34272573 34272241 ID=Msa0403720-mRNA-1:cds;Parent=Msa0403720-mRNA-1
chr3_2 CDS 34271407 34271498 34271407 ID=Msa0403720-mRNA-1:cds;Parent=Msa0403720-mRNA-1
chr3_2 CDS 34269871 34269928 34269871 ID=Msa0403720-mRNA-1:cds;Parent=Msa0403720-mRNA-1
chr3_2 CDS 34269461 34269526 34269461 ID=Msa0403720-mRNA-1:cds;Parent=Msa0403720-mRNA-1
chr3_2 CDS 34269238 34269360 34269238 ID=Msa0403720-mRNA-1:cds;Parent=Msa0403720-mRNA-1
chr3_2 three_prime_UTR 34268982 34269237 34268982 ID=Msa0403720-mRNA-1:three_prime_utr;Parent=Msa0403720-mRNA-1
Gene Sequence

>Msa0403720

ATGGTGGGAGCAATATCTGTTATTGGTTCATCAATGATGGACTCACACACTGGTCCATGTTTGTGTGTGGATGCACTTCCAACAACTAATATGAATCTCAAGATTGGTTGTGGAGATGTTGTTTTGTGGAAGAATTTGATGGGAAAGAAGCATTTGGAAAAGCGCGGCGGCGGAAGAACTATGGGGTTGAGTAGTTCTTTTACTGATCCTGGAAGGGAATGGAGAGTCAAGTTTAGCAGAAGCTGTAAGAAGCAACGCAGTAATGATAGGAGAGTTACCATTGTTAGTGAGCTTGGTGGTCAATATGAGGACACTTTTGAGGATGTTAAAACGCAAATGCTCAACTATTTCACGTACAAGGCTGTGAGGACTGTTATGCAGCAGCTGTATGAGATGAACCCACCTAAATATACGTGGTTTTATAATTTTGTTGTATCAAACAAACCACAAGATGGAAAACGTTTTATCCGATTGCTTGGGAAGGAACAACAAGAGCTTGCTGAAAGAGTGATGTTGACTCGGCTTAACCTTTATGCTAAATGGGTCAAGAAATGTAATCATGCTGAGATATATAATCAAATATCAGATGAAAACTTGGAGTTGATGAGGGAACGACTCATGGAGACAGTAATATGGCCCTCAGATGACAGCAGCTCAGAATTAATTGGCTGA

Protein sequence

>Msa0403720

MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRTMGLSSSFTDPGREWRVKFSRSCKKQRSNDRRVTIVSELGGQYEDTFEDVKTQMLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQELAERVMLTRLNLYAKWVKKCNHAEIYNQISDENLELMRERLMETVIWPSDDSSSELIG*