Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652210 | XP_003608087.1 | 96.034 | 353 | 14 | 0 | 12 | 364 | 12 | 364 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652210 | sp|Q43725|CYSKM_ARATH | 73.352 | 349 | 91 | 1 | 17 | 363 | 81 | 429 | 7.28e-180 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046200 | Msa0652210 | 0.811292 | 7.532662e-51 | -8.615850e-47 |
| Msa0054790 | Msa0652210 | 0.809589 | 1.756275e-50 | -8.615850e-47 |
| Msa0611950 | Msa0652210 | 0.895472 | 9.275422e-76 | -8.615850e-47 |
| Msa0647300 | Msa0652210 | 0.809398 | 1.930275e-50 | -8.615850e-47 |
| Msa0652210 | Msa0686830 | 0.815225 | 1.030756e-51 | -8.615850e-47 |
| Msa0652210 | Msa0694790 | 0.939699 | 8.183711e-100 | -8.615850e-47 |
| Msa0652210 | Msa0896920 | 0.828122 | 1.071361e-54 | -8.615850e-47 |
| Msa0652210 | Msa0946010 | 0.805145 | 1.537226e-49 | -8.615850e-47 |
| Msa0652210 | Msa0967780 | 0.805917 | 1.059147e-49 | -8.615850e-47 |
| Msa0652210 | Msa0970270 | 0.807731 | 4.379464e-50 | -8.615850e-47 |
| Msa0652210 | Msa0996980 | 0.817712 | 2.859939e-52 | -8.615850e-47 |
| Msa0652210 | Msa1024480 | 0.808044 | 3.758400e-50 | -8.615850e-47 |
| Msa0652210 | Msa1079820 | 0.808262 | 3.376582e-50 | -8.615850e-47 |
| Msa0652210 | Msa1147010 | 0.822090 | 2.852951e-53 | -8.615850e-47 |
| Msa0652210 | Msa1152310 | 0.826280 | 2.958214e-54 | -8.615850e-47 |
| Msa0652210 | Msa1160540 | 0.801194 | 1.010389e-48 | -8.615850e-47 |
| Msa0652210 | Msa1165460 | 0.809365 | 1.961528e-50 | -8.615850e-47 |
| Msa0652210 | Msa1263110 | 0.805121 | 1.555271e-49 | -8.615850e-47 |
| Msa0652210 | Msa1284020 | 0.824865 | 6.403499e-54 | -8.615850e-47 |
| Msa0652210 | Msa1359590 | 0.809296 | 2.029731e-50 | -8.615850e-47 |
| Msa0652210 | Msa1403660 | 0.804288 | 2.321599e-49 | -8.615850e-47 |
| Msa0652210 | Msa1407810 | 0.814638 | 1.391248e-51 | -8.615850e-47 |
| Msa0652210 | Msa1409600 | 0.820012 | 8.589692e-53 | -8.615850e-47 |
| Msa0652210 | Msa1433360 | 0.813637 | 2.313736e-51 | -8.615850e-47 |
| Msa0652210 | Msa1437780 | 0.813380 | 2.635853e-51 | -8.615850e-47 |
| Msa0652210 | Msa1455360 | 0.805048 | 1.611439e-49 | -8.615850e-47 |
| Msa0209060 | Msa0652210 | 0.803166 | 3.969362e-49 | -8.615850e-47 |
| Msa0380110 | Msa0652210 | 0.803008 | 4.278904e-49 | -8.615850e-47 |
| Msa0248320 | Msa0652210 | 0.801304 | 9.590426e-49 | -8.615850e-47 |
| Msa0356240 | Msa0652210 | 0.802350 | 5.850341e-49 | -8.615850e-47 |
| Msa0360640 | Msa0652210 | 0.804740 | 1.868159e-49 | -8.615850e-47 |
| Msa0501080 | Msa0652210 | 0.814282 | 1.667751e-51 | -8.615850e-47 |
| Msa0540640 | Msa0652210 | 0.803443 | 3.477953e-49 | -8.615850e-47 |
| Msa0549970 | Msa0652210 | 0.820332 | 7.254129e-53 | -8.615850e-47 |
| Msa0556720 | Msa0652210 | 0.875027 | 4.257267e-68 | -8.615850e-47 |
| Msa0567330 | Msa0652210 | 0.821995 | 3.001802e-53 | -8.615850e-47 |
| Msa0567570 | Msa0652210 | 0.813618 | 2.336574e-51 | -8.615850e-47 |
| Msa0576320 | Msa0652210 | 0.816092 | 6.609768e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652210 | MtrunA17_Chr4g0045721 | 96.034 | 353 | 14 | 0 | 12 | 364 | 12 | 364 | 0.0 | 692 |
| Msa0652210 | MtrunA17_Chr4g0045771 | 87.912 | 364 | 35 | 2 | 1 | 364 | 1 | 355 | 0.0 | 647 |
| Msa0652210 | MtrunA17_Chr4g0045781 | 75.584 | 385 | 71 | 5 | 1 | 364 | 1 | 383 | 0.0 | 548 |
| Msa0652210 | MtrunA17_Chr5g0394491 | 70.440 | 318 | 94 | 0 | 47 | 364 | 8 | 325 | 1.51e-153 | 435 |
| Msa0652210 | MtrunA17_Chr1g0205381 | 70.440 | 318 | 94 | 0 | 47 | 364 | 8 | 325 | 8.77e-153 | 433 |
| Msa0652210 | MtrunA17_Chr1g0191041 | 71.384 | 318 | 91 | 0 | 43 | 360 | 4 | 321 | 1.03e-152 | 432 |
| Msa0652210 | MtrunA17_Chr1g0191051 | 63.376 | 314 | 115 | 0 | 47 | 360 | 7 | 320 | 7.37e-143 | 407 |
| Msa0652210 | MtrunA17_Chr7g0254401 | 57.550 | 351 | 136 | 2 | 10 | 360 | 31 | 368 | 4.58e-137 | 395 |
| Msa0652210 | MtrunA17_Chr7g0248021 | 59.621 | 317 | 128 | 0 | 46 | 362 | 60 | 376 | 6.30e-135 | 390 |
| Msa0652210 | MtrunA17_Chr1g0191061 | 55.056 | 356 | 114 | 2 | 51 | 360 | 25 | 380 | 1.17e-124 | 363 |
| Msa0652210 | MtrunA17_Chr1g0191071 | 56.554 | 267 | 109 | 2 | 95 | 360 | 1 | 261 | 3.91e-93 | 279 |
| Msa0652210 | MtrunA17_Chr5g0446431 | 27.887 | 355 | 197 | 6 | 49 | 346 | 46 | 398 | 1.36e-38 | 142 |
| Msa0652210 | MtrunA17_Chr2g0310201 | 35.766 | 137 | 52 | 5 | 111 | 220 | 6 | 133 | 5.94e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652210 | AT3G59760.3 | 73.352 | 349 | 91 | 1 | 17 | 363 | 81 | 429 | 0.0 | 508 |
| Msa0652210 | AT3G59760.1 | 73.352 | 349 | 91 | 1 | 17 | 363 | 81 | 429 | 1.14e-180 | 508 |
| Msa0652210 | AT2G43750.1 | 76.636 | 321 | 75 | 0 | 43 | 363 | 71 | 391 | 8.44e-177 | 496 |
| Msa0652210 | AT2G43750.2 | 76.636 | 321 | 75 | 0 | 43 | 363 | 71 | 391 | 8.44e-177 | 496 |
| Msa0652210 | AT3G59760.2 | 72.586 | 321 | 86 | 1 | 17 | 335 | 81 | 401 | 1.96e-161 | 459 |
| Msa0652210 | AT4G14880.5 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 6.44e-148 | 421 |
| Msa0652210 | AT4G14880.3 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 6.44e-148 | 421 |
| Msa0652210 | AT4G14880.4 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 6.44e-148 | 421 |
| Msa0652210 | AT4G14880.2 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 6.44e-148 | 421 |
| Msa0652210 | AT4G14880.1 | 66.246 | 317 | 107 | 0 | 47 | 363 | 5 | 321 | 6.44e-148 | 421 |
| Msa0652210 | AT3G04940.1 | 64.151 | 318 | 114 | 0 | 43 | 360 | 4 | 321 | 3.13e-139 | 399 |
| Msa0652210 | AT3G04940.2 | 64.151 | 318 | 114 | 0 | 43 | 360 | 4 | 321 | 3.13e-139 | 399 |
| Msa0652210 | AT5G28020.2 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.53e-138 | 396 |
| Msa0652210 | AT5G28020.4 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.53e-138 | 396 |
| Msa0652210 | AT5G28020.1 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.53e-138 | 396 |
| Msa0652210 | AT5G28020.3 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.53e-138 | 396 |
| Msa0652210 | AT5G28020.6 | 64.151 | 318 | 114 | 0 | 43 | 360 | 3 | 320 | 3.53e-138 | 396 |
| Msa0652210 | AT5G28030.1 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 3.08e-135 | 389 |
| Msa0652210 | AT5G28030.4 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 3.08e-135 | 389 |
| Msa0652210 | AT5G28030.5 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 3.08e-135 | 389 |
| Msa0652210 | AT5G28030.2 | 62.617 | 321 | 120 | 0 | 43 | 363 | 3 | 323 | 3.08e-135 | 389 |
| Msa0652210 | AT3G61440.1 | 53.760 | 359 | 154 | 4 | 14 | 362 | 8 | 364 | 4.27e-128 | 372 |
| Msa0652210 | AT3G03630.1 | 58.438 | 320 | 123 | 1 | 42 | 361 | 94 | 403 | 1.65e-122 | 359 |
| Msa0652210 | AT3G22460.1 | 64.074 | 270 | 77 | 1 | 95 | 364 | 1 | 250 | 1.05e-119 | 346 |
| Msa0652210 | AT3G61440.2 | 58.582 | 268 | 111 | 0 | 95 | 362 | 1 | 268 | 1.60e-110 | 324 |
| Msa0652210 | AT5G28030.3 | 62.753 | 247 | 92 | 0 | 43 | 289 | 3 | 249 | 1.29e-104 | 308 |
| Msa0652210 | AT3G61440.4 | 52.443 | 307 | 134 | 4 | 14 | 310 | 8 | 312 | 6.12e-103 | 307 |
| Msa0652210 | AT3G61440.3 | 57.851 | 242 | 102 | 0 | 121 | 362 | 2 | 243 | 1.82e-97 | 290 |
| Msa0652210 | AT3G22460.2 | 70.166 | 181 | 54 | 0 | 47 | 227 | 8 | 188 | 4.74e-93 | 276 |
| Msa0652210 | AT5G28020.5 | 60.256 | 234 | 93 | 0 | 127 | 360 | 1 | 234 | 5.15e-91 | 273 |
| Msa0652210 | AT1G55880.1 | 27.717 | 368 | 206 | 6 | 37 | 346 | 30 | 395 | 2.41e-40 | 147 |
| Msa0652210 | AT1G55880.2 | 27.187 | 320 | 174 | 5 | 37 | 298 | 30 | 348 | 7.91e-35 | 131 |
Find 110 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4_3:-59929685 | Msa0652210:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4_3:-59928942 | Msa0652210:CDS |
| TGCTGCTAAGCTTGAGCTTA+TGG | 0.244545 | 4_3:-59930895 | Msa0652210:CDS |
| CACTAACCAGCAAGCCTTCC+TGG | 0.248330 | 4_3:+59929171 | None:intergenic |
| CACATTCTTCTCGAGCTTCC+TGG | 0.248992 | 4_3:+59928585 | None:intergenic |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_3:-59929526 | Msa0652210:CDS |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4_3:+59929359 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4_3:-59929395 | Msa0652210:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4_3:-59930037 | Msa0652210:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4_3:-59929403 | Msa0652210:intron |
| CCTTGGGTGGGTTGTCTCCT+AGG | 0.310476 | 4_3:-59928322 | Msa0652210:three_prime_UTR |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4_3:-59929910 | Msa0652210:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4_3:+59931097 | None:intergenic |
| CTATGAGTGTTAGCTTTCCT+TGG | 0.338136 | 4_3:-59928436 | Msa0652210:three_prime_UTR |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4_3:+59929978 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4_3:+59929934 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4_3:+59929739 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4_3:+59931096 | None:intergenic |
| AGAATACTGGGCCAGAGATA+TGG | 0.384193 | 4_3:-59929750 | Msa0652210:CDS |
| TCTTTGTCCAAGCAAAATAA+TGG | 0.384507 | 4_3:+59928472 | None:intergenic |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4_3:-59930006 | Msa0652210:CDS |
| GAACGTGTAAAATTGTTTCA+TGG | 0.403579 | 4_3:+59928545 | None:intergenic |
| TTCCTTGGATTTCCATCACT+TGG | 0.404405 | 4_3:-59928421 | Msa0652210:three_prime_UTR |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4_3:+59930931 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4_3:+59929870 | None:intergenic |
| TATAAAAGATATTTCAATCA+TGG | 0.409870 | 4_3:-59931421 | Msa0652210:five_prime_UTR |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4_3:-59929177 | Msa0652210:intron |
| GTATTCTCATAATGCACCTT+AGG | 0.423127 | 4_3:+59929766 | None:intergenic |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4_3:+59931091 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.427220 | 4_3:+59928624 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4_3:+59929360 | None:intergenic |
| TAATGCACCTTAGGATTTGA+AGG | 0.427650 | 4_3:+59929775 | None:intergenic |
| GGCACTCTTGCTTTGTATTG+TGG | 0.436042 | 4_3:-59928400 | Msa0652210:three_prime_UTR |
| GTTTGGGATTCGACAAAGGC+AGG | 0.443433 | 4_3:+59931113 | None:intergenic |
| ACATATCTTTCACCGAAGCT+TGG | 0.446152 | 4_3:+59928623 | None:intergenic |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4_3:-59929700 | Msa0652210:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4_3:+59931067 | None:intergenic |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4_3:+59929808 | None:intergenic |
| AGCTGAAACGGTGGCTGGTA+CGG | 0.450973 | 4_3:+59931159 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4_3:+59929861 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4_3:-59928635 | Msa0652210:CDS |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4_3:-59929979 | Msa0652210:CDS |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4_3:-59929396 | Msa0652210:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4_3:+59928551 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4_3:-59928968 | Msa0652210:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4_3:-59930972 | Msa0652210:intron |
| AAGGTGCATTATGAGAATAC+TGG | 0.479612 | 4_3:-59929763 | Msa0652210:CDS |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4_3:-59929782 | Msa0652210:CDS |
| GATATTATTAAAAGAAGATA+AGG | 0.491700 | 4_3:+59931262 | None:intergenic |
| AAAATACAACAGAAACAAAA+CGG | 0.496982 | 4_3:+59928352 | None:intergenic |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4_3:-59929189 | Msa0652210:CDS |
| TATAAATAGAAAAGAGTACA+AGG | 0.500169 | 4_3:+59928208 | None:intergenic |
| TCGACCACTTGTACAAAATA+CGG | 0.506189 | 4_3:+59928500 | None:intergenic |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4_3:-59928570 | Msa0652210:CDS |
| AGATCCTGGTTGAGCTGAAA+CGG | 0.512803 | 4_3:+59931147 | None:intergenic |
| GAAGAAGCCATTGTTGCTTG+TGG | 0.514767 | 4_3:+59931221 | None:intergenic |
| TTGGGATTCGACAAAGGCAG+GGG | 0.517966 | 4_3:+59931115 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4_3:-59930172 | Msa0652210:CDS |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4_3:-59929390 | Msa0652210:CDS |
| ATTAAAATAATAATTAGCTC+TGG | 0.526067 | 4_3:+59931370 | None:intergenic |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4_3:-59928918 | Msa0652210:CDS |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4_3:-59929697 | Msa0652210:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4_3:-59929736 | Msa0652210:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4_3:-59929679 | Msa0652210:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4_3:-59930869 | Msa0652210:intron |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4_3:+59930177 | None:intergenic |
| AAAGATATTTCAATCATGGA+GGG | 0.551487 | 4_3:-59931417 | Msa0652210:five_prime_UTR |
| AGGGGAAGATGAAAAGATCC+TGG | 0.553418 | 4_3:+59931133 | None:intergenic |
| ACAAGTAAAAGACTTGACTA+AGG | 0.556177 | 4_3:+59931196 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4_3:+59929681 | None:intergenic |
| GGCGACGACAATAACAAAAG+TGG | 0.560281 | 4_3:+59928373 | None:intergenic |
| AAAGCAAGAGTGCCAAGTGA+TGG | 0.563208 | 4_3:+59928409 | None:intergenic |
| AGGTGCATTATGAGAATACT+GGG | 0.564800 | 4_3:-59929762 | Msa0652210:CDS |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4_3:-59929402 | Msa0652210:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4_3:+59930005 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4_3:-59930934 | Msa0652210:CDS |
| GAATTCTCCACAAGCAACAA+TGG | 0.571120 | 4_3:-59931228 | Msa0652210:exon |
| GGTTGAGCTGAAACGGTGGC+TGG | 0.574406 | 4_3:+59931154 | None:intergenic |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4_3:-59930187 | Msa0652210:CDS |
| TTTGGGATTCGACAAAGGCA+GGG | 0.588345 | 4_3:+59931114 | None:intergenic |
| TTGAAAATGTGTCTAAAACA+TGG | 0.589637 | 4_3:+59928523 | None:intergenic |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4_3:-59930012 | Msa0652210:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4_3:-59929559 | Msa0652210:intron |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4_3:+59930942 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4_3:-59930167 | Msa0652210:intron |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_3:+59929529 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4_3:-59929394 | Msa0652210:CDS |
| AAAAGATATTTCAATCATGG+AGG | 0.610591 | 4_3:-59931418 | Msa0652210:five_prime_UTR |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4_3:+59930870 | None:intergenic |
| TCCTGGTTGAGCTGAAACGG+TGG | 0.618636 | 4_3:+59931150 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4_3:-59928917 | Msa0652210:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4_3:-59930933 | Msa0652210:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4_3:-59929868 | Msa0652210:CDS |
| GCTGGTTTGGGATTCGACAA+AGG | 0.632618 | 4_3:+59931109 | None:intergenic |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4_3:+59929337 | None:intergenic |
| AACACTCATAGAAGAATCAG+AGG | 0.638502 | 4_3:+59928448 | None:intergenic |
| GCCACCGTTTCAGCTCAACC+AGG | 0.639745 | 4_3:-59931151 | Msa0652210:CDS |
| TGCCAAGTGATGGAAATCCA+AGG | 0.640604 | 4_3:+59928419 | None:intergenic |
| GTTTCTGTTTGTTTGCAGTG+TGG | 0.642960 | 4_3:-59928256 | Msa0652210:three_prime_UTR |
| CCTAGGAGACAACCCACCCA+AGG | 0.644420 | 4_3:+59928322 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4_3:-59929205 | Msa0652210:CDS |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4_3:+59930009 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_3:-59929523 | Msa0652210:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4_3:-59928903 | Msa0652210:intron |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4_3:+59928952 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4_3:-59929340 | Msa0652210:intron |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4_3:-59929185 | Msa0652210:CDS |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4_3:+59929396 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4_3:-59930171 | Msa0652210:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4_3:-59931072 | Msa0652210:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTAGTATAAAAATA+TGG | + | chr4_3:59929038-59929057 | None:intergenic | 10.0% |
| !! | ATTAATTATGCTTTAATATA+TGG | + | chr4_3:59930520-59930539 | None:intergenic | 10.0% |
| !!! | ATAAGTAATTTTTTTTAATG+CGG | + | chr4_3:59930720-59930739 | None:intergenic | 10.0% |
| !! | TAAAAAAAATTACTTATGTA+AGG | - | chr4_3:59930723-59930742 | Msa0652210:intron | 10.0% |
| !! | ATTAAAATAATAATTAGCTC+TGG | + | chr4_3:59928219-59928238 | None:intergenic | 15.0% |
| !! | GATATTATTAAAAGAAGATA+AGG | + | chr4_3:59928327-59928346 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | - | chr4_3:59928773-59928792 | Msa0652210:intron | 15.0% |
| !!! | AATTTAAGGTTTATATTCTA+AGG | + | chr4_3:59928949-59928968 | None:intergenic | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | - | chr4_3:59928949-59928968 | Msa0652210:CDS | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | - | chr4_3:59929051-59929070 | Msa0652210:intron | 15.0% |
| !! | AACTTATTATATTTCTTACT+TGG | + | chr4_3:59930093-59930112 | None:intergenic | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | - | chr4_3:59930522-59930541 | Msa0652210:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | - | chr4_3:59930523-59930542 | Msa0652210:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | + | chr4_3:59930931-59930950 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | - | chr4_3:59930932-59930951 | Msa0652210:CDS | 15.0% |
| !!! | CTTTTACTATATTTCAATCA+TGG | - | chr4_3:59928243-59928262 | Msa0652210:three_prime_UTR | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | - | chr4_3:59928819-59928838 | Msa0652210:intron | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | + | chr4_3:59929174-59929193 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | - | chr4_3:59929350-59929369 | Msa0652210:CDS | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | + | chr4_3:59929939-59929958 | None:intergenic | 20.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | - | chr4_3:59929942-59929961 | Msa0652210:CDS | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | + | chr4_3:59929955-59929974 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | + | chr4_3:59930011-59930030 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | + | chr4_3:59930229-59930248 | None:intergenic | 20.0% |
| !! | AAAATACAACAGAAACAAAA+CGG | + | chr4_3:59931237-59931256 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCTTTTTTCCTT+GGG | - | chr4_3:59931248-59931267 | Msa0652210:five_prime_UTR | 20.0% |
| !!! | TATAAATAGAAAAGAGTACA+AGG | + | chr4_3:59931381-59931400 | None:intergenic | 20.0% |
| !!! | AAATGTCTCTTTTTTCTTAA+TGG | + | chr4_3:59931418-59931437 | None:intergenic | 20.0% |
| ! | AAAAGATATTTCAATCATGG+AGG | - | chr4_3:59928168-59928187 | Msa0652210:three_prime_UTR | 25.0% |
| ! | AAAGATATTTCAATCATGGA+GGG | - | chr4_3:59928169-59928188 | Msa0652210:three_prime_UTR | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | - | chr4_3:59929067-59929086 | Msa0652210:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | - | chr4_3:59929082-59929101 | Msa0652210:intron | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | - | chr4_3:59929105-59929124 | Msa0652210:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | + | chr4_3:59929308-59929327 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | - | chr4_3:59929527-59929546 | Msa0652210:CDS | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | + | chr4_3:59930145-59930164 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | + | chr4_3:59930230-59930249 | None:intergenic | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | + | chr4_3:59930308-59930327 | None:intergenic | 25.0% |
| ! | TTTGTATCTTGATTAACTGT+TGG | - | chr4_3:59930556-59930575 | Msa0652210:intron | 25.0% |
| ! | TTTACCTAAATTCTTACCAT+TGG | - | chr4_3:59930594-59930613 | Msa0652210:intron | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | + | chr4_3:59930601-59930620 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | + | chr4_3:59930764-59930783 | None:intergenic | 25.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | + | chr4_3:59930813-59930832 | None:intergenic | 25.0% |
| !! | TTGAAAATGTGTCTAAAACA+TGG | + | chr4_3:59931066-59931085 | None:intergenic | 25.0% |
| !! | GTTGTATTTTCTTTTTTCCT+TGG | - | chr4_3:59931247-59931266 | Msa0652210:five_prime_UTR | 25.0% |
| !!! | AATTGTTTTTGTTGCTACTT+TGG | - | chr4_3:59931287-59931306 | Msa0652210:five_prime_UTR | 25.0% |
| ACAAGTAAAAGACTTGACTA+AGG | + | chr4_3:59928393-59928412 | None:intergenic | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | - | chr4_3:59928514-59928533 | Msa0652210:three_prime_UTR | 30.0% | |
| ! | TAGTCAATGGGTGATATTTT+TGG | - | chr4_3:59928849-59928868 | Msa0652210:intron | 30.0% |
| TAAGGAATAAATGTTGTTGG+TGG | - | chr4_3:59929085-59929104 | Msa0652210:intron | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | + | chr4_3:59929655-59929674 | None:intergenic | 30.0% | |
| !! | AGAGTTCTTATGAAAGCATT+TGG | - | chr4_3:59929676-59929695 | Msa0652210:CDS | 30.0% |
| TGATAATCCTTCAAATCCTA+AGG | - | chr4_3:59929804-59929823 | Msa0652210:CDS | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | + | chr4_3:59929850-59929869 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | - | chr4_3:59929850-59929869 | Msa0652210:CDS | 30.0% | |
| !! | CAAAGTAGACATTTTAGTCT+CGG | - | chr4_3:59929873-59929892 | Msa0652210:CDS | 30.0% |
| TAAATGGAAATCAACAAGCT+AGG | + | chr4_3:59929995-59930014 | None:intergenic | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | + | chr4_3:59930125-59930144 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | - | chr4_3:59930166-59930185 | Msa0652210:intron | 30.0% |
| AATCCTTGATGAAGTTATAG+CGG | - | chr4_3:59930246-59930265 | Msa0652210:intron | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | - | chr4_3:59930602-59930621 | Msa0652210:intron | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | - | chr4_3:59930748-59930767 | Msa0652210:intron | 30.0% | |
| ! | TTTTTATATACCATCCAAGG+TGG | + | chr4_3:59930761-59930780 | None:intergenic | 30.0% |
| GAACGTGTAAAATTGTTTCA+TGG | + | chr4_3:59931044-59931063 | None:intergenic | 30.0% | |
| TCTTTGTCCAAGCAAAATAA+TGG | + | chr4_3:59931117-59931136 | None:intergenic | 30.0% | |
| ! | TATTTTCTTTTTTCCTTGGG+TGG | - | chr4_3:59931251-59931270 | Msa0652210:five_prime_UTR | 30.0% |
| ! | ATTTTCTTTTTTCCTTGGGT+GGG | - | chr4_3:59931252-59931271 | Msa0652210:five_prime_UTR | 30.0% |
| TAGCAACAAAAACAATTCCT+AGG | + | chr4_3:59931284-59931303 | None:intergenic | 30.0% | |
| AATATTGAGATCATCGTTGC+TGG | + | chr4_3:59928498-59928517 | None:intergenic | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | + | chr4_3:59928647-59928666 | None:intergenic | 35.0% | |
| !! | TTACCTGAAGAGTATCACTA+AGG | - | chr4_3:59928652-59928671 | Msa0652210:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | - | chr4_3:59928653-59928672 | Msa0652210:intron | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | - | chr4_3:59928836-59928855 | Msa0652210:intron | 35.0% |
| GTTGGTTAGTGTTAGTCAAT+GGG | - | chr4_3:59928837-59928856 | Msa0652210:intron | 35.0% | |
| GATAAGACGGTCCAAATTTA+AGG | + | chr4_3:59928963-59928982 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | - | chr4_3:59929265-59929284 | Msa0652210:intron | 35.0% | |
| !! | GTATGCACTTCAGAGTATTT+TGG | - | chr4_3:59929549-59929568 | Msa0652210:intron | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | - | chr4_3:59929562-59929581 | Msa0652210:intron | 35.0% |
| ACCTTTAGTAGCTGCTATAA+AGG | + | chr4_3:59929611-59929630 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACCGAATATTCCA+AGG | - | chr4_3:59929708-59929727 | Msa0652210:CDS | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | + | chr4_3:59929719-59929738 | None:intergenic | 35.0% |
| TGTTGAAGCATGTATGCATT+AGG | + | chr4_3:59929781-59929800 | None:intergenic | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | + | chr4_3:59929814-59929833 | None:intergenic | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | + | chr4_3:59929823-59929842 | None:intergenic | 35.0% | |
| AAGGTGCATTATGAGAATAC+TGG | - | chr4_3:59929823-59929842 | Msa0652210:CDS | 35.0% | |
| AGGTGCATTATGAGAATACT+GGG | - | chr4_3:59929824-59929843 | Msa0652210:CDS | 35.0% | |
| ! | CACACATAATTCAGGGTATT+GGG | - | chr4_3:59930191-59930210 | Msa0652210:CDS | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | - | chr4_3:59930192-59930211 | Msa0652210:CDS | 35.0% |
| AAGAATCTGTCAAAACTGCA+AGG | - | chr4_3:59930381-59930400 | Msa0652210:intron | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_3:59930681-59930700 | None:intergenic | 35.0% |
| AAATGAGGGAAAGCTTATTG+TGG | - | chr4_3:59930683-59930702 | Msa0652210:intron | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | - | chr4_3:59930744-59930763 | Msa0652210:intron | 35.0% | |
| ! | ATATGATCAGATTGGCTGAA+GGG | + | chr4_3:59930805-59930824 | None:intergenic | 35.0% |
| ! | AATATGATCAGATTGGCTGA+AGG | + | chr4_3:59930806-59930825 | None:intergenic | 35.0% |
| AGAATGTGAGAAAATGCAAC+CGG | - | chr4_3:59931016-59931035 | Msa0652210:intron | 35.0% | |
| GTAAAATTGTTTCATGGCTC+CGG | + | chr4_3:59931038-59931057 | None:intergenic | 35.0% | |
| ! | TCAACCGTATTTTGTACAAG+TGG | - | chr4_3:59931082-59931101 | Msa0652210:CDS | 35.0% |
| TCGACCACTTGTACAAAATA+CGG | + | chr4_3:59931089-59931108 | None:intergenic | 35.0% | |
| ! | TATTTTGTACAAGTGGTCGA+TGG | - | chr4_3:59931089-59931108 | Msa0652210:CDS | 35.0% |
| !! | GATGGAACCATTATTTTGCT+TGG | - | chr4_3:59931107-59931126 | Msa0652210:CDS | 35.0% |
| AACACTCATAGAAGAATCAG+AGG | + | chr4_3:59931141-59931160 | None:intergenic | 35.0% | |
| !!! | TGTTTTTGTTGCTACTTTGG+CGG | - | chr4_3:59931290-59931309 | Msa0652210:five_prime_UTR | 35.0% |
| GAATTCTCCACAAGCAACAA+TGG | - | chr4_3:59928358-59928377 | Msa0652210:three_prime_UTR | 40.0% | |
| GCCAATGATATTACAGAGGT+CGG | - | chr4_3:59928518-59928537 | Msa0652210:three_prime_UTR | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | + | chr4_3:59928522-59928541 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | - | chr4_3:59928972-59928991 | Msa0652210:intron | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | + | chr4_3:59928976-59928995 | None:intergenic | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | - | chr4_3:59929127-59929146 | Msa0652210:intron | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | + | chr4_3:59929201-59929220 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | - | chr4_3:59929269-59929288 | Msa0652210:intron | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | + | chr4_3:59929378-59929397 | None:intergenic | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | + | chr4_3:59929412-59929431 | None:intergenic | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | - | chr4_3:59929415-59929434 | Msa0652210:intron | 40.0% | |
| ! | CTTTCGTATTTTACCTTCCC+AGG | + | chr4_3:59929435-59929454 | None:intergenic | 40.0% |
| GCCTTTATAGCAGCTACTAA+AGG | - | chr4_3:59929607-59929626 | Msa0652210:intron | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | - | chr4_3:59929718-59929737 | Msa0652210:CDS | 40.0% | |
| !! | GACATTTTAGTCTCGGCAAT+TGG | - | chr4_3:59929880-59929899 | Msa0652210:CDS | 40.0% |
| CTACGTATCAATCAGTGCAT+CGG | - | chr4_3:59930027-59930046 | Msa0652210:CDS | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_3:59930060-59930079 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_3:59930060-59930079 | Msa0652210:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_3:59930063-59930082 | Msa0652210:intron | 40.0% | |
| ACAGGACCACACATAATTCA+GGG | - | chr4_3:59930184-59930203 | Msa0652210:CDS | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | + | chr4_3:59930193-59930212 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | - | chr4_3:59930190-59930209 | Msa0652210:CDS | 40.0% | |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | - | chr4_3:59930216-59930235 | Msa0652210:intron | 40.0% |
| AGACCGCTATAACTTCATCA+AGG | + | chr4_3:59930252-59930271 | None:intergenic | 40.0% | |
| ! | CTTTTCTGATTGTCTGCATG+TGG | - | chr4_3:59930336-59930355 | Msa0652210:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | - | chr4_3:59930356-59930375 | Msa0652210:intron | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | + | chr4_3:59930378-59930397 | None:intergenic | 40.0% |
| TCTTACCATTGGAAAACAGG+TGG | - | chr4_3:59930605-59930624 | Msa0652210:intron | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | - | chr4_3:59930606-59930625 | Msa0652210:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_3:59930613-59930632 | None:intergenic | 40.0% |
| TGCTAAGAGACCTGAAAATG+AGG | - | chr4_3:59930668-59930687 | Msa0652210:intron | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | - | chr4_3:59930669-59930688 | Msa0652210:intron | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | + | chr4_3:59930965-59930984 | None:intergenic | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | + | chr4_3:59930966-59930985 | None:intergenic | 40.0% | |
| ! | TGTCTCTACTTCTCTTTTCC+AGG | - | chr4_3:59930983-59931002 | Msa0652210:intron | 40.0% |
| !! | CTATGAGTGTTAGCTTTCCT+TGG | - | chr4_3:59931150-59931169 | Msa0652210:CDS | 40.0% |
| TTCCTTGGATTTCCATCACT+TGG | - | chr4_3:59931165-59931184 | Msa0652210:CDS | 40.0% | |
| GTTTCTGTTTGTTTGCAGTG+TGG | - | chr4_3:59931330-59931349 | Msa0652210:five_prime_UTR | 40.0% | |
| ! | GAAGAAGCCATTGTTGCTTG+TGG | + | chr4_3:59928368-59928387 | None:intergenic | 45.0% |
| AGATCCTGGTTGAGCTGAAA+CGG | + | chr4_3:59928442-59928461 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | + | chr4_3:59928456-59928475 | None:intergenic | 45.0% | |
| ! | TTTGGGATTCGACAAAGGCA+GGG | + | chr4_3:59928475-59928494 | None:intergenic | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | + | chr4_3:59928492-59928511 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | + | chr4_3:59928493-59928512 | None:intergenic | 45.0% |
| TGCTTACATGCACAGCTCAT+AGG | - | chr4_3:59928614-59928633 | Msa0652210:CDS | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | - | chr4_3:59928628-59928647 | Msa0652210:CDS | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | + | chr4_3:59928658-59928677 | None:intergenic | 45.0% | |
| TGCTGCTAAGCTTGAGCTTA+TGG | - | chr4_3:59928691-59928710 | Msa0652210:intron | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | + | chr4_3:59928719-59928738 | None:intergenic | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | - | chr4_3:59928717-59928736 | Msa0652210:intron | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | - | chr4_3:59928721-59928740 | Msa0652210:intron | 45.0% | |
| !!! | GGTGATATTTTTGGATCCCG+AGG | - | chr4_3:59928858-59928877 | Msa0652210:intron | 45.0% |
| TATGCATGACTGCATGTCCT+CGG | + | chr4_3:59928878-59928897 | None:intergenic | 45.0% | |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | - | chr4_3:59929361-59929380 | Msa0652210:CDS | 45.0% |
| ATTCTTGATGCCGAGCAGAA+AGG | - | chr4_3:59929399-59929418 | Msa0652210:CDS | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | - | chr4_3:59929414-59929433 | Msa0652210:intron | 45.0% | |
| !! | ATTTTGGTAGAACCTACCGG+TGG | - | chr4_3:59929565-59929584 | Msa0652210:intron | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | - | chr4_3:59929566-59929585 | Msa0652210:intron | 45.0% |
| AGAATACTGGGCCAGAGATA+TGG | - | chr4_3:59929836-59929855 | Msa0652210:CDS | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | - | chr4_3:59929886-59929905 | Msa0652210:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | - | chr4_3:59930183-59930202 | Msa0652210:CDS | 45.0% | |
| !! | ATAATTCAGGGTATTGGGGC+TGG | - | chr4_3:59930196-59930215 | Msa0652210:CDS | 45.0% |
| AAACAGGTGGGAATTTCCTC+AGG | - | chr4_3:59930618-59930637 | Msa0652210:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | - | chr4_3:59930951-59930970 | Msa0652210:CDS | 45.0% | |
| ! | TGCCAAGTGATGGAAATCCA+AGG | + | chr4_3:59931170-59931189 | None:intergenic | 45.0% |
| !! | AAAGCAAGAGTGCCAAGTGA+TGG | + | chr4_3:59931180-59931199 | None:intergenic | 45.0% |
| GGCACTCTTGCTTTGTATTG+TGG | - | chr4_3:59931186-59931205 | Msa0652210:CDS | 45.0% | |
| GGCGACGACAATAACAAAAG+TGG | + | chr4_3:59931216-59931235 | None:intergenic | 45.0% | |
| !! | TATTATTAGTATAAAAATAT+GGG | + | chr4_3:59929037-59929056 | None:intergenic | 5.0% |
| TTGGGATTCGACAAAGGCAG+GGG | + | chr4_3:59928474-59928493 | None:intergenic | 50.0% | |
| ! | GTTTGGGATTCGACAAAGGC+AGG | + | chr4_3:59928476-59928495 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGGATTCGACAA+AGG | + | chr4_3:59928480-59928499 | None:intergenic | 50.0% |
| ATGCATGACTGCATGTCCTC+GGG | + | chr4_3:59928877-59928896 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | - | chr4_3:59929366-59929385 | Msa0652210:CDS | 50.0% |
| AGGACTCATAACACCTGGGA+AGG | - | chr4_3:59929419-59929438 | Msa0652210:intron | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | + | chr4_3:59929584-59929603 | None:intergenic | 50.0% | |
| AACTGCTCCACTCATAGCCT+TGG | + | chr4_3:59929728-59929747 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | + | chr4_3:59929908-59929927 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | + | chr4_3:59930176-59930195 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | - | chr4_3:59930397-59930416 | Msa0652210:intron | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | - | chr4_3:59930401-59930420 | Msa0652210:intron | 50.0% | |
| CACATTCTTCTCGAGCTTCC+TGG | + | chr4_3:59931004-59931023 | None:intergenic | 50.0% | |
| AGCTGAAACGGTGGCTGGTA+CGG | + | chr4_3:59928430-59928449 | None:intergenic | 55.0% | |
| TCCTGGTTGAGCTGAAACGG+TGG | + | chr4_3:59928439-59928458 | None:intergenic | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | + | chr4_3:59928990-59929009 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | - | chr4_3:59928990-59929009 | Msa0652210:intron | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | - | chr4_3:59928994-59929013 | Msa0652210:intron | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | + | chr4_3:59929008-59929027 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | + | chr4_3:59929580-59929599 | None:intergenic | 55.0% | |
| ACCGGTGGGAACACAGGAAT+TGG | - | chr4_3:59929580-59929599 | Msa0652210:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | - | chr4_3:59929901-59929920 | Msa0652210:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | - | chr4_3:59929907-59929926 | Msa0652210:CDS | 55.0% |
| CACTAACCAGCAAGCCTTCC+TGG | + | chr4_3:59930418-59930437 | None:intergenic | 55.0% | |
| AGCTGTAGCAGCACAACCTG+AGG | + | chr4_3:59930637-59930656 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | - | chr4_3:59930644-59930663 | Msa0652210:intron | 55.0% | |
| GGTTGAGCTGAAACGGTGGC+TGG | + | chr4_3:59928435-59928454 | None:intergenic | 60.0% | |
| GCCACCGTTTCAGCTCAACC+AGG | - | chr4_3:59928435-59928454 | Msa0652210:three_prime_UTR | 60.0% | |
| GAACCTACCGGTGGGAACAC+AGG | - | chr4_3:59929574-59929593 | Msa0652210:intron | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | - | chr4_3:59929889-59929908 | Msa0652210:CDS | 60.0% | |
| AGCACTCCAGGAAGGCTTGC+TGG | - | chr4_3:59930409-59930428 | Msa0652210:intron | 60.0% | |
| CCTAGGAGACAACCCACCCA+AGG | + | chr4_3:59931267-59931286 | None:intergenic | 60.0% | |
| !! | CCTTGGGTGGGTTGTCTCCT+AGG | - | chr4_3:59931264-59931283 | Msa0652210:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59928168 | 59931440 | 59928168 | ID=Msa0652210;Name=Msa0652210 |
| chr4_3 | mRNA | 59928168 | 59931440 | 59928168 | ID=Msa0652210-mRNA-1;Parent=Msa0652210;Name=Msa0652210-mRNA-1;_AED=0.32;_eAED=0.32;_QI=209|1|1|1|1|1|9|394|364 |
| chr4_3 | exon | 59928168 | 59928654 | 59928168 | ID=Msa0652210-mRNA-1:exon:16215;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59928904 | 59928984 | 59928904 | ID=Msa0652210-mRNA-1:exon:16214;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59929178 | 59929237 | 59929178 | ID=Msa0652210-mRNA-1:exon:16213;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59929341 | 59929420 | 59929341 | ID=Msa0652210-mRNA-1:exon:16212;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59929515 | 59929566 | 59929515 | ID=Msa0652210-mRNA-1:exon:16211;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59929645 | 59930046 | 59929645 | ID=Msa0652210-mRNA-1:exon:16210;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59930168 | 59930225 | 59930168 | ID=Msa0652210-mRNA-1:exon:16209;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59930870 | 59930979 | 59930870 | ID=Msa0652210-mRNA-1:exon:16208;Parent=Msa0652210-mRNA-1 |
| chr4_3 | exon | 59931073 | 59931440 | 59931073 | ID=Msa0652210-mRNA-1:exon:16207;Parent=Msa0652210-mRNA-1 |
| chr4_3 | five_prime_UTR | 59931232 | 59931440 | 59931232 | ID=Msa0652210-mRNA-1:five_prime_utr;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59931073 | 59931231 | 59931073 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59930870 | 59930979 | 59930870 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59930168 | 59930225 | 59930168 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59929645 | 59930046 | 59929645 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59929515 | 59929566 | 59929515 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59929341 | 59929420 | 59929341 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59929178 | 59929237 | 59929178 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59928904 | 59928984 | 59928904 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | CDS | 59928562 | 59928654 | 59928562 | ID=Msa0652210-mRNA-1:cds;Parent=Msa0652210-mRNA-1 |
| chr4_3 | three_prime_UTR | 59928168 | 59928561 | 59928168 | ID=Msa0652210-mRNA-1:three_prime_utr;Parent=Msa0652210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
